Multiple sequence alignment - TraesCS1D01G288000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G288000 chr1D 100.000 5437 0 0 1 5437 386429574 386435010 0.000000e+00 10041.0
1 TraesCS1D01G288000 chr1D 100.000 33 0 0 1274 1306 141313078 141313110 1.640000e-05 62.1
2 TraesCS1D01G288000 chr1B 94.222 2752 105 24 1336 4064 518806831 518809551 0.000000e+00 4152.0
3 TraesCS1D01G288000 chr1B 91.226 1778 87 19 3312 5049 519607338 519609086 0.000000e+00 2355.0
4 TraesCS1D01G288000 chr1B 91.237 1164 67 11 2158 3315 519517875 519519009 0.000000e+00 1552.0
5 TraesCS1D01G288000 chr1B 91.144 1163 70 9 2158 3315 519505394 519506528 0.000000e+00 1546.0
6 TraesCS1D01G288000 chr1B 87.500 976 54 29 4085 5049 518810018 518810936 0.000000e+00 1064.0
7 TraesCS1D01G288000 chr1B 79.867 601 60 25 332 881 518805948 518806538 3.070000e-102 383.0
8 TraesCS1D01G288000 chr1B 93.385 257 15 2 971 1226 518806570 518806825 3.970000e-101 379.0
9 TraesCS1D01G288000 chr1B 100.000 35 0 0 1274 1308 672479219 672479185 1.260000e-06 65.8
10 TraesCS1D01G288000 chr1A 94.896 2116 69 16 1962 4064 486340206 486342295 0.000000e+00 3273.0
11 TraesCS1D01G288000 chr1A 87.034 1342 73 38 534 1821 486338676 486339970 0.000000e+00 1421.0
12 TraesCS1D01G288000 chr1A 90.486 967 40 14 4061 5001 486342400 486343340 0.000000e+00 1229.0
13 TraesCS1D01G288000 chr1A 87.648 421 46 5 120 535 486338143 486338562 8.190000e-133 484.0
14 TraesCS1D01G288000 chr1A 90.533 169 14 1 2378 2544 240310289 240310121 7.090000e-54 222.0
15 TraesCS1D01G288000 chr4D 88.039 1530 116 30 2017 3533 25438011 25439486 0.000000e+00 1749.0
16 TraesCS1D01G288000 chr4D 90.615 650 44 11 3640 4282 25440470 25441109 0.000000e+00 846.0
17 TraesCS1D01G288000 chr4D 88.423 691 62 9 1334 2019 25437231 25437908 0.000000e+00 817.0
18 TraesCS1D01G288000 chr4D 83.037 507 46 17 4286 4766 25441151 25441643 1.810000e-114 424.0
19 TraesCS1D01G288000 chr4D 83.286 353 37 17 928 1263 25436854 25437201 6.840000e-79 305.0
20 TraesCS1D01G288000 chr4D 84.672 137 12 6 707 841 25436539 25436668 1.590000e-25 128.0
21 TraesCS1D01G288000 chr4D 100.000 33 0 0 1274 1306 123716487 123716455 1.640000e-05 62.1
22 TraesCS1D01G288000 chr4B 88.686 1096 88 22 2539 3623 37691420 37692490 0.000000e+00 1304.0
23 TraesCS1D01G288000 chr4B 89.708 651 54 10 3640 4283 37693612 37694256 0.000000e+00 819.0
24 TraesCS1D01G288000 chr4B 89.386 603 44 10 1334 1926 37690371 37690963 0.000000e+00 741.0
25 TraesCS1D01G288000 chr4B 81.065 507 55 25 4281 4766 37694285 37694771 3.090000e-97 366.0
26 TraesCS1D01G288000 chr4B 79.848 526 55 28 4281 4766 37695982 37696496 2.430000e-88 337.0
27 TraesCS1D01G288000 chr4B 79.468 526 55 22 4281 4766 37697706 37698218 1.890000e-84 324.0
28 TraesCS1D01G288000 chr4B 82.188 320 33 13 956 1274 37690057 37690353 2.510000e-63 254.0
29 TraesCS1D01G288000 chr4B 89.542 153 16 0 4131 4283 37697525 37697677 1.550000e-45 195.0
30 TraesCS1D01G288000 chr4B 87.179 156 18 2 4130 4283 37695798 37695953 5.600000e-40 176.0
31 TraesCS1D01G288000 chr4B 87.013 154 20 0 4130 4283 37699248 37699401 2.010000e-39 174.0
32 TraesCS1D01G288000 chr4A 87.012 1101 89 28 2539 3623 577759404 577758342 0.000000e+00 1192.0
33 TraesCS1D01G288000 chr4A 85.567 970 76 33 963 1926 577761117 577760206 0.000000e+00 957.0
34 TraesCS1D01G288000 chr4A 86.697 654 53 22 3642 4283 577757916 577757285 0.000000e+00 695.0
35 TraesCS1D01G288000 chr4A 93.299 388 26 0 5050 5437 722383683 722383296 1.700000e-159 573.0
36 TraesCS1D01G288000 chr4A 81.481 648 66 30 4281 4897 577757094 577756470 2.940000e-132 483.0
37 TraesCS1D01G288000 chr4A 90.698 86 8 0 4198 4283 577757208 577757123 1.240000e-21 115.0
38 TraesCS1D01G288000 chrUn 100.000 389 0 0 2349 2737 480163284 480163672 0.000000e+00 719.0
39 TraesCS1D01G288000 chrUn 95.361 388 18 0 5050 5437 10231183 10230796 7.740000e-173 617.0
40 TraesCS1D01G288000 chrUn 100.000 33 0 0 1274 1306 36545921 36545889 1.640000e-05 62.1
41 TraesCS1D01G288000 chrUn 100.000 33 0 0 1274 1306 225928311 225928279 1.640000e-05 62.1
42 TraesCS1D01G288000 chrUn 100.000 33 0 0 1274 1306 229501010 229500978 1.640000e-05 62.1
43 TraesCS1D01G288000 chrUn 100.000 33 0 0 1274 1306 231481995 231481963 1.640000e-05 62.1
44 TraesCS1D01G288000 chrUn 100.000 33 0 0 1274 1306 244851107 244851139 1.640000e-05 62.1
45 TraesCS1D01G288000 chrUn 100.000 33 0 0 1274 1306 275330204 275330236 1.640000e-05 62.1
46 TraesCS1D01G288000 chr5D 94.330 388 21 1 5050 5436 13398990 13398603 1.300000e-165 593.0
47 TraesCS1D01G288000 chr6A 93.041 388 27 0 5050 5437 561585810 561585423 7.900000e-158 568.0
48 TraesCS1D01G288000 chr6A 92.583 391 29 0 5047 5437 16669146 16669536 3.680000e-156 562.0
49 TraesCS1D01G288000 chr6A 92.784 388 28 0 5050 5437 561454826 561455213 3.680000e-156 562.0
50 TraesCS1D01G288000 chr2D 92.839 391 26 2 5048 5437 81254969 81255358 2.840000e-157 566.0
51 TraesCS1D01G288000 chr2D 96.875 32 1 0 283 314 441723336 441723367 3.000000e-03 54.7
52 TraesCS1D01G288000 chr2A 91.753 388 32 0 5050 5437 128482532 128482919 1.720000e-149 540.0
53 TraesCS1D01G288000 chr7A 91.538 390 32 1 5048 5437 16155321 16154933 2.230000e-148 536.0
54 TraesCS1D01G288000 chr6D 92.405 158 10 1 2381 2536 392273230 392273073 1.970000e-54 224.0
55 TraesCS1D01G288000 chr3A 92.810 153 10 1 2384 2535 383690932 383691084 2.550000e-53 220.0
56 TraesCS1D01G288000 chr7B 96.875 32 0 1 286 317 371022342 371022312 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G288000 chr1D 386429574 386435010 5436 False 10041.00 10041 100.000000 1 5437 1 chr1D.!!$F2 5436
1 TraesCS1D01G288000 chr1B 519607338 519609086 1748 False 2355.00 2355 91.226000 3312 5049 1 chr1B.!!$F3 1737
2 TraesCS1D01G288000 chr1B 519517875 519519009 1134 False 1552.00 1552 91.237000 2158 3315 1 chr1B.!!$F2 1157
3 TraesCS1D01G288000 chr1B 519505394 519506528 1134 False 1546.00 1546 91.144000 2158 3315 1 chr1B.!!$F1 1157
4 TraesCS1D01G288000 chr1B 518805948 518810936 4988 False 1494.50 4152 88.743500 332 5049 4 chr1B.!!$F4 4717
5 TraesCS1D01G288000 chr1A 486338143 486343340 5197 False 1601.75 3273 90.016000 120 5001 4 chr1A.!!$F1 4881
6 TraesCS1D01G288000 chr4D 25436539 25441643 5104 False 711.50 1749 86.345333 707 4766 6 chr4D.!!$F1 4059
7 TraesCS1D01G288000 chr4B 37690057 37699401 9344 False 469.00 1304 85.408300 956 4766 10 chr4B.!!$F1 3810
8 TraesCS1D01G288000 chr4A 577756470 577761117 4647 True 688.40 1192 86.291000 963 4897 5 chr4A.!!$R2 3934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.106819 CTCTCCCAGCCCATCCAAAG 60.107 60.000 0.00 0.0 0.00 2.77 F
158 159 0.249868 TTGCTCTCGACAACCTGTGG 60.250 55.000 0.00 0.0 0.00 4.17 F
958 1264 0.326332 AAGCCCCCTCTGTACTACCC 60.326 60.000 0.00 0.0 0.00 3.69 F
1298 1624 0.037590 TTTGGACCCGGGTGAATCAG 59.962 55.000 36.01 0.0 0.00 2.90 F
1302 1628 0.323629 GACCCGGGTGAATCAGTTCA 59.676 55.000 36.01 0.0 41.89 3.18 F
1303 1629 0.324943 ACCCGGGTGAATCAGTTCAG 59.675 55.000 29.69 0.0 44.58 3.02 F
1306 1632 0.798776 CGGGTGAATCAGTTCAGTGC 59.201 55.000 0.00 0.0 44.58 4.40 F
3116 4361 1.340211 ACAACACCGAACTCAAACCCA 60.340 47.619 0.00 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 1609 0.323629 TGAACTGATTCACCCGGGTC 59.676 55.000 27.51 13.93 40.01 4.46 R
1285 1611 0.324943 ACTGAACTGATTCACCCGGG 59.675 55.000 22.25 22.25 40.01 5.73 R
2822 4064 1.630369 AGATGGCACCATGTACACACT 59.370 47.619 6.96 0.00 36.70 3.55 R
2823 4065 2.113860 AGATGGCACCATGTACACAC 57.886 50.000 6.96 0.00 36.70 3.82 R
3103 4348 2.833794 TCAGTCTTGGGTTTGAGTTCG 58.166 47.619 0.00 0.00 0.00 3.95 R
3141 4388 3.390135 ACATCACTGACAAACTGTACCG 58.610 45.455 0.00 0.00 0.00 4.02 R
3299 4547 5.974108 TGTTACAGCTAAGTATGGGAGAAC 58.026 41.667 0.00 0.00 0.00 3.01 R
4638 9782 0.034616 GCTCCGGAAGAGGATGATGG 59.965 60.000 5.23 0.00 43.46 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.443016 AGGAGCACCTAGAGGGCG 60.443 66.667 0.00 0.00 45.83 6.13
21 22 2.442272 GGAGCACCTAGAGGGCGA 60.442 66.667 0.00 0.00 40.27 5.54
22 23 2.787567 GGAGCACCTAGAGGGCGAC 61.788 68.421 0.00 0.00 40.27 5.19
23 24 2.037367 AGCACCTAGAGGGCGACA 59.963 61.111 0.00 0.00 40.27 4.35
24 25 2.184579 GCACCTAGAGGGCGACAC 59.815 66.667 0.00 0.00 40.27 3.67
25 26 2.352032 GCACCTAGAGGGCGACACT 61.352 63.158 0.00 0.00 40.27 3.55
26 27 1.889530 GCACCTAGAGGGCGACACTT 61.890 60.000 0.00 0.00 40.27 3.16
27 28 0.108615 CACCTAGAGGGCGACACTTG 60.109 60.000 0.00 0.00 40.27 3.16
28 29 1.153549 CCTAGAGGGCGACACTTGC 60.154 63.158 0.00 0.00 0.00 4.01
51 52 4.285851 GCTAAGTGAGCGCCAAGT 57.714 55.556 2.29 0.00 42.62 3.16
52 53 1.790387 GCTAAGTGAGCGCCAAGTG 59.210 57.895 2.29 0.00 42.62 3.16
53 54 1.639298 GCTAAGTGAGCGCCAAGTGG 61.639 60.000 2.29 0.00 42.62 4.00
63 64 4.020617 CCAAGTGGCGCTCTCCCA 62.021 66.667 7.64 0.00 0.00 4.37
64 65 2.435586 CAAGTGGCGCTCTCCCAG 60.436 66.667 7.64 0.00 31.89 4.45
65 66 4.400961 AAGTGGCGCTCTCCCAGC 62.401 66.667 7.64 0.00 45.85 4.85
70 71 4.925861 GCGCTCTCCCAGCCCATC 62.926 72.222 0.00 0.00 46.74 3.51
71 72 4.247380 CGCTCTCCCAGCCCATCC 62.247 72.222 0.00 0.00 46.74 3.51
72 73 3.092511 GCTCTCCCAGCCCATCCA 61.093 66.667 0.00 0.00 43.17 3.41
73 74 2.683465 GCTCTCCCAGCCCATCCAA 61.683 63.158 0.00 0.00 43.17 3.53
74 75 2.001803 CTCTCCCAGCCCATCCAAA 58.998 57.895 0.00 0.00 0.00 3.28
75 76 0.106819 CTCTCCCAGCCCATCCAAAG 60.107 60.000 0.00 0.00 0.00 2.77
76 77 0.846427 TCTCCCAGCCCATCCAAAGT 60.846 55.000 0.00 0.00 0.00 2.66
77 78 0.682209 CTCCCAGCCCATCCAAAGTG 60.682 60.000 0.00 0.00 0.00 3.16
78 79 1.139498 TCCCAGCCCATCCAAAGTGA 61.139 55.000 0.00 0.00 0.00 3.41
79 80 0.967380 CCCAGCCCATCCAAAGTGAC 60.967 60.000 0.00 0.00 0.00 3.67
80 81 0.967380 CCAGCCCATCCAAAGTGACC 60.967 60.000 0.00 0.00 0.00 4.02
81 82 0.967380 CAGCCCATCCAAAGTGACCC 60.967 60.000 0.00 0.00 0.00 4.46
82 83 1.142688 AGCCCATCCAAAGTGACCCT 61.143 55.000 0.00 0.00 0.00 4.34
83 84 0.681243 GCCCATCCAAAGTGACCCTC 60.681 60.000 0.00 0.00 0.00 4.30
84 85 0.995024 CCCATCCAAAGTGACCCTCT 59.005 55.000 0.00 0.00 0.00 3.69
85 86 1.340405 CCCATCCAAAGTGACCCTCTG 60.340 57.143 0.00 0.00 0.00 3.35
86 87 1.340405 CCATCCAAAGTGACCCTCTGG 60.340 57.143 0.00 0.00 37.80 3.86
97 98 4.465446 CCTCTGGGGCCTCTCGGA 62.465 72.222 3.07 3.37 0.00 4.55
98 99 2.837291 CTCTGGGGCCTCTCGGAG 60.837 72.222 3.07 9.78 0.00 4.63
123 124 7.985752 AGGAGTACTCGTTGATATTTTTAAGGG 59.014 37.037 16.56 0.00 0.00 3.95
132 133 7.464977 CGTTGATATTTTTAAGGGGTACTCGTG 60.465 40.741 0.00 0.00 0.00 4.35
146 147 3.512033 ACTCGTGGATTAGTTGCTCTC 57.488 47.619 0.00 0.00 0.00 3.20
158 159 0.249868 TTGCTCTCGACAACCTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
175 176 2.680913 GGTCGTGTGCTCATGTGCC 61.681 63.158 16.62 8.89 32.85 5.01
187 188 1.352017 TCATGTGCCCTCAAGTCATGT 59.648 47.619 0.00 0.00 37.64 3.21
190 191 0.890542 GTGCCCTCAAGTCATGTGCA 60.891 55.000 0.00 0.00 0.00 4.57
219 220 0.529773 GCCCACACGAGCGATCAATA 60.530 55.000 0.00 0.00 0.00 1.90
270 271 2.837532 TATGTGCTCACTTGCTCACA 57.162 45.000 1.47 0.00 42.66 3.58
278 279 5.179368 GTGCTCACTTGCTCACAAAGTTATA 59.821 40.000 0.00 0.00 34.74 0.98
281 282 6.963805 GCTCACTTGCTCACAAAGTTATATTC 59.036 38.462 0.00 0.00 34.74 1.75
284 285 9.890629 TCACTTGCTCACAAAGTTATATTCTAT 57.109 29.630 0.00 0.00 34.74 1.98
289 290 7.719633 TGCTCACAAAGTTATATTCTATTCCCC 59.280 37.037 0.00 0.00 0.00 4.81
308 309 4.482952 CCCCCGTCCCATAATATAAGAC 57.517 50.000 0.00 0.00 0.00 3.01
309 310 3.841845 CCCCCGTCCCATAATATAAGACA 59.158 47.826 0.00 0.00 0.00 3.41
579 703 9.512435 CATTTATCTTCACTTTCATGGACATTC 57.488 33.333 0.00 0.00 0.00 2.67
600 724 8.752187 ACATTCTTTGCATATATGTGACCTTTT 58.248 29.630 14.14 0.00 0.00 2.27
691 830 0.887387 TTTGAGTTAGTGGGCCGTGC 60.887 55.000 0.00 0.00 0.00 5.34
889 1184 2.333462 CCCCTCTCCCCCTCCTACA 61.333 68.421 0.00 0.00 0.00 2.74
912 1207 2.668550 GCCGCCGTTTCCTCAGTT 60.669 61.111 0.00 0.00 0.00 3.16
913 1208 2.966309 GCCGCCGTTTCCTCAGTTG 61.966 63.158 0.00 0.00 0.00 3.16
916 1222 1.869690 GCCGTTTCCTCAGTTGCTC 59.130 57.895 0.00 0.00 0.00 4.26
917 1223 1.578206 GCCGTTTCCTCAGTTGCTCC 61.578 60.000 0.00 0.00 0.00 4.70
919 1225 0.955919 CGTTTCCTCAGTTGCTCCCC 60.956 60.000 0.00 0.00 0.00 4.81
953 1259 1.303282 CCCAAAGCCCCCTCTGTAC 59.697 63.158 0.00 0.00 0.00 2.90
954 1260 1.208165 CCCAAAGCCCCCTCTGTACT 61.208 60.000 0.00 0.00 0.00 2.73
955 1261 1.580059 CCAAAGCCCCCTCTGTACTA 58.420 55.000 0.00 0.00 0.00 1.82
958 1264 0.326332 AAGCCCCCTCTGTACTACCC 60.326 60.000 0.00 0.00 0.00 3.69
960 1266 1.457079 CCCCCTCTGTACTACCCCG 60.457 68.421 0.00 0.00 0.00 5.73
964 1270 2.042639 TCTGTACTACCCCGCCCC 60.043 66.667 0.00 0.00 0.00 5.80
965 1271 2.042230 CTGTACTACCCCGCCCCT 60.042 66.667 0.00 0.00 0.00 4.79
968 1274 3.031873 TACTACCCCGCCCCTCCT 61.032 66.667 0.00 0.00 0.00 3.69
970 1276 4.159108 CTACCCCGCCCCTCCTCT 62.159 72.222 0.00 0.00 0.00 3.69
981 1290 0.755686 CCCTCCTCTCCATTCCTTCG 59.244 60.000 0.00 0.00 0.00 3.79
1087 1396 1.115930 GCTCCCTCTTCCGCTCCATA 61.116 60.000 0.00 0.00 0.00 2.74
1126 1436 4.399303 AGCTTTAATTTGATTGGGGACGAG 59.601 41.667 0.00 0.00 0.00 4.18
1130 1440 1.243902 TTTGATTGGGGACGAGTTGC 58.756 50.000 0.00 0.00 0.00 4.17
1158 1468 3.132289 CGCTCTGACCAATTAGGGTTCTA 59.868 47.826 0.00 0.00 42.53 2.10
1162 1472 6.127140 GCTCTGACCAATTAGGGTTCTACTTA 60.127 42.308 0.00 0.00 42.53 2.24
1216 1537 8.915036 TCCTGCTTTGTTTTAATACCAAGTTTA 58.085 29.630 10.24 0.59 0.00 2.01
1267 1593 5.995282 TGTTTAGACGTGATTTCAGACCAAT 59.005 36.000 0.00 0.00 0.00 3.16
1270 1596 8.665685 GTTTAGACGTGATTTCAGACCAATTAT 58.334 33.333 0.00 0.00 0.00 1.28
1271 1597 6.668541 AGACGTGATTTCAGACCAATTATG 57.331 37.500 0.00 0.00 0.00 1.90
1272 1598 6.173339 AGACGTGATTTCAGACCAATTATGT 58.827 36.000 0.00 0.00 0.00 2.29
1273 1599 7.327975 AGACGTGATTTCAGACCAATTATGTA 58.672 34.615 0.00 0.00 0.00 2.29
1274 1600 7.492669 AGACGTGATTTCAGACCAATTATGTAG 59.507 37.037 0.00 0.00 0.00 2.74
1276 1602 6.037062 CGTGATTTCAGACCAATTATGTAGCA 59.963 38.462 0.00 0.00 0.00 3.49
1277 1603 7.412853 GTGATTTCAGACCAATTATGTAGCAG 58.587 38.462 0.00 0.00 0.00 4.24
1280 1606 5.435686 TCAGACCAATTATGTAGCAGGTT 57.564 39.130 0.00 0.00 0.00 3.50
1281 1607 5.815581 TCAGACCAATTATGTAGCAGGTTT 58.184 37.500 0.00 0.00 0.00 3.27
1282 1608 5.647658 TCAGACCAATTATGTAGCAGGTTTG 59.352 40.000 0.00 0.00 33.86 2.93
1283 1609 4.949856 AGACCAATTATGTAGCAGGTTTGG 59.050 41.667 0.00 0.00 38.43 3.28
1285 1611 4.705023 ACCAATTATGTAGCAGGTTTGGAC 59.295 41.667 5.65 0.00 36.49 4.02
1294 1620 2.516909 GGTTTGGACCCGGGTGAA 59.483 61.111 36.01 21.11 40.25 3.18
1295 1621 1.076014 GGTTTGGACCCGGGTGAAT 59.924 57.895 36.01 5.71 40.25 2.57
1296 1622 0.963856 GGTTTGGACCCGGGTGAATC 60.964 60.000 36.01 20.80 40.25 2.52
1297 1623 0.250989 GTTTGGACCCGGGTGAATCA 60.251 55.000 36.01 20.46 0.00 2.57
1298 1624 0.037590 TTTGGACCCGGGTGAATCAG 59.962 55.000 36.01 0.00 0.00 2.90
1299 1625 1.131303 TTGGACCCGGGTGAATCAGT 61.131 55.000 36.01 2.09 0.00 3.41
1300 1626 1.131303 TGGACCCGGGTGAATCAGTT 61.131 55.000 36.01 1.09 0.00 3.16
1301 1627 0.392595 GGACCCGGGTGAATCAGTTC 60.393 60.000 36.01 13.37 34.85 3.01
1302 1628 0.323629 GACCCGGGTGAATCAGTTCA 59.676 55.000 36.01 0.00 41.89 3.18
1303 1629 0.324943 ACCCGGGTGAATCAGTTCAG 59.675 55.000 29.69 0.00 44.58 3.02
1304 1630 0.324943 CCCGGGTGAATCAGTTCAGT 59.675 55.000 14.18 0.00 44.58 3.41
1305 1631 1.442769 CCGGGTGAATCAGTTCAGTG 58.557 55.000 0.00 0.00 44.58 3.66
1306 1632 0.798776 CGGGTGAATCAGTTCAGTGC 59.201 55.000 0.00 0.00 44.58 4.40
1307 1633 1.877680 CGGGTGAATCAGTTCAGTGCA 60.878 52.381 0.00 0.00 44.58 4.57
1308 1634 2.440409 GGGTGAATCAGTTCAGTGCAT 58.560 47.619 0.00 0.00 44.58 3.96
1309 1635 2.421424 GGGTGAATCAGTTCAGTGCATC 59.579 50.000 0.00 0.00 44.58 3.91
1310 1636 3.341823 GGTGAATCAGTTCAGTGCATCT 58.658 45.455 0.00 0.00 44.58 2.90
1311 1637 3.126514 GGTGAATCAGTTCAGTGCATCTG 59.873 47.826 9.27 9.27 44.58 2.90
1312 1638 2.745821 TGAATCAGTTCAGTGCATCTGC 59.254 45.455 10.36 0.00 43.32 4.26
1313 1639 2.783609 ATCAGTTCAGTGCATCTGCT 57.216 45.000 10.36 2.40 43.32 4.24
1314 1640 3.900966 ATCAGTTCAGTGCATCTGCTA 57.099 42.857 10.36 1.03 43.32 3.49
1381 1716 3.593442 TTTGAGTGATTGGAGTGGGTT 57.407 42.857 0.00 0.00 0.00 4.11
1428 1767 2.893637 TGGAGAAGCTGAGAAATACGC 58.106 47.619 0.00 0.00 0.00 4.42
1560 1906 1.809651 GCAGAGCACTTCAGCTATCCC 60.810 57.143 0.00 0.00 46.75 3.85
1582 1928 4.759183 CCGTATCTACTGGTAAGACTACCC 59.241 50.000 0.00 0.00 46.39 3.69
1603 1949 2.397777 CACGCTGTTGTGCACATTTA 57.602 45.000 22.39 9.11 33.76 1.40
1764 2119 8.386606 TGTTGTTTGAAAGCATGTTAATTTGTC 58.613 29.630 0.00 0.00 0.00 3.18
1984 2553 7.066645 GTGTTAGTTTGGAAGACCTACTTTTGT 59.933 37.037 0.00 0.00 39.13 2.83
2114 2788 5.590530 TTCACCAGCAAAAGTTACATGTT 57.409 34.783 2.30 0.00 0.00 2.71
2290 3067 7.278424 ACATTGCCATGCTGTGAATTTTATTAC 59.722 33.333 0.00 0.00 33.05 1.89
2322 3551 8.877779 CAAGAGTTCTGTTTGTAATCTAGGATG 58.122 37.037 0.00 0.00 0.00 3.51
2819 4061 9.938280 TCTTATGTTAAAGTTATGCACTACTGT 57.062 29.630 3.51 1.20 32.94 3.55
2820 4062 9.973246 CTTATGTTAAAGTTATGCACTACTGTG 57.027 33.333 3.51 0.00 46.37 3.66
2821 4063 7.979444 ATGTTAAAGTTATGCACTACTGTGT 57.021 32.000 3.51 0.00 45.44 3.72
2823 4065 8.528917 TGTTAAAGTTATGCACTACTGTGTAG 57.471 34.615 3.51 3.49 45.44 2.74
2824 4066 8.145767 TGTTAAAGTTATGCACTACTGTGTAGT 58.854 33.333 4.72 4.72 45.44 2.73
3116 4361 1.340211 ACAACACCGAACTCAAACCCA 60.340 47.619 0.00 0.00 0.00 4.51
3128 4373 5.104259 ACTCAAACCCAAGACTGATATCC 57.896 43.478 0.00 0.00 0.00 2.59
3141 4388 7.365840 AGACTGATATCCGTTTGTTTTTCTC 57.634 36.000 1.00 0.00 0.00 2.87
3291 4539 9.868277 AAAAGATGTAGAAGAGTATGTTCTCTG 57.132 33.333 0.00 0.00 46.96 3.35
3324 4574 6.406692 TCTCCCATACTTAGCTGTAACATC 57.593 41.667 0.00 0.00 0.00 3.06
3326 4576 7.295340 TCTCCCATACTTAGCTGTAACATCTA 58.705 38.462 0.00 0.00 0.00 1.98
3709 6406 7.389232 CCTCCAATATTGATGTCAGCACTATA 58.611 38.462 17.23 0.00 0.00 1.31
3825 6522 1.207089 TCTCAGCCCATCTTTACACGG 59.793 52.381 0.00 0.00 0.00 4.94
3877 6576 1.332195 GAAGAAGCCCTTTGCCACTT 58.668 50.000 0.00 0.00 42.71 3.16
3882 6581 1.005748 GCCCTTTGCCACTTTGAGC 60.006 57.895 0.00 0.00 0.00 4.26
4120 7272 7.603180 TTATGGAATCAGCACTATACTGAGT 57.397 36.000 0.00 0.00 46.71 3.41
4122 7274 4.711846 TGGAATCAGCACTATACTGAGTGT 59.288 41.667 0.00 0.00 46.71 3.55
4191 7343 6.693113 GCTATAGCTGGTTTAATTTGAAGTGC 59.307 38.462 17.75 0.00 38.21 4.40
4237 7564 0.859232 AGCAACGTTGAAGTGTAGCG 59.141 50.000 31.62 1.26 0.00 4.26
4250 7577 1.062525 GTAGCGCTTCCATTTGCCG 59.937 57.895 18.68 0.00 0.00 5.69
4468 7859 4.549458 TCAAGCAGAAGCAACAAATTAGC 58.451 39.130 0.00 0.00 45.49 3.09
4778 9972 2.362760 TGGTCGGGCGCTAGGTTA 60.363 61.111 7.64 0.00 0.00 2.85
4903 10103 6.549952 TGTGCAAAATGCCTTTTAAAGTTTG 58.450 32.000 11.62 11.62 44.23 2.93
4944 10498 0.930742 CGCTACATCTCCGTCTTCGC 60.931 60.000 0.00 0.00 35.54 4.70
4947 10501 1.671328 CTACATCTCCGTCTTCGCTGA 59.329 52.381 0.00 0.00 35.54 4.26
5049 11215 5.095490 ACTTCACTTTGTTTCTTTGCTTCG 58.905 37.500 0.00 0.00 0.00 3.79
5050 11216 4.955925 TCACTTTGTTTCTTTGCTTCGA 57.044 36.364 0.00 0.00 0.00 3.71
5051 11217 4.908736 TCACTTTGTTTCTTTGCTTCGAG 58.091 39.130 0.00 0.00 0.00 4.04
5052 11218 4.394920 TCACTTTGTTTCTTTGCTTCGAGT 59.605 37.500 0.00 0.00 0.00 4.18
5053 11219 4.496895 CACTTTGTTTCTTTGCTTCGAGTG 59.503 41.667 0.00 0.00 0.00 3.51
5054 11220 4.394920 ACTTTGTTTCTTTGCTTCGAGTGA 59.605 37.500 0.00 0.00 0.00 3.41
5055 11221 4.955925 TTGTTTCTTTGCTTCGAGTGAA 57.044 36.364 0.00 0.00 0.00 3.18
5056 11222 5.499139 TTGTTTCTTTGCTTCGAGTGAAT 57.501 34.783 0.00 0.00 32.61 2.57
5058 11224 5.273170 TGTTTCTTTGCTTCGAGTGAATTG 58.727 37.500 0.00 0.00 32.61 2.32
5060 11226 2.877786 TCTTTGCTTCGAGTGAATTGCA 59.122 40.909 0.00 0.00 34.56 4.08
5061 11227 3.314913 TCTTTGCTTCGAGTGAATTGCAA 59.685 39.130 0.00 0.00 41.04 4.08
5062 11228 3.706802 TTGCTTCGAGTGAATTGCAAA 57.293 38.095 1.71 0.00 40.32 3.68
5063 11229 3.706802 TGCTTCGAGTGAATTGCAAAA 57.293 38.095 1.71 0.00 33.76 2.44
5081 11247 2.908688 AAAACCACCACATTGAAGCC 57.091 45.000 0.00 0.00 0.00 4.35
5082 11248 2.086610 AAACCACCACATTGAAGCCT 57.913 45.000 0.00 0.00 0.00 4.58
5083 11249 2.969821 AACCACCACATTGAAGCCTA 57.030 45.000 0.00 0.00 0.00 3.93
5085 11251 1.004745 ACCACCACATTGAAGCCTAGG 59.995 52.381 3.67 3.67 0.00 3.02
5086 11252 1.683011 CCACCACATTGAAGCCTAGGG 60.683 57.143 11.72 0.00 0.00 3.53
5087 11253 1.004745 CACCACATTGAAGCCTAGGGT 59.995 52.381 7.93 7.93 0.00 4.34
5089 11255 2.094675 CCACATTGAAGCCTAGGGTTG 58.905 52.381 30.29 18.71 35.84 3.77
5090 11256 1.474077 CACATTGAAGCCTAGGGTTGC 59.526 52.381 30.29 20.24 35.84 4.17
5092 11258 1.747355 CATTGAAGCCTAGGGTTGCAG 59.253 52.381 30.29 13.23 35.84 4.41
5093 11259 1.064003 TTGAAGCCTAGGGTTGCAGA 58.936 50.000 30.29 10.39 35.84 4.26
5095 11261 1.423541 TGAAGCCTAGGGTTGCAGAAA 59.576 47.619 30.29 6.35 35.84 2.52
5096 11262 2.158534 TGAAGCCTAGGGTTGCAGAAAA 60.159 45.455 30.29 4.68 35.84 2.29
5100 11266 2.553247 GCCTAGGGTTGCAGAAAAGACT 60.553 50.000 11.72 0.00 0.00 3.24
5101 11267 3.077359 CCTAGGGTTGCAGAAAAGACTG 58.923 50.000 0.00 0.00 40.43 3.51
5102 11268 2.736670 AGGGTTGCAGAAAAGACTGT 57.263 45.000 0.00 0.00 39.73 3.55
5104 11270 2.952310 AGGGTTGCAGAAAAGACTGTTC 59.048 45.455 0.00 0.00 39.73 3.18
5105 11271 2.952310 GGGTTGCAGAAAAGACTGTTCT 59.048 45.455 1.69 1.69 39.73 3.01
5107 11273 4.023963 GGGTTGCAGAAAAGACTGTTCTAC 60.024 45.833 7.60 3.18 39.73 2.59
5108 11274 4.318831 GGTTGCAGAAAAGACTGTTCTACG 60.319 45.833 7.60 0.00 39.73 3.51
5109 11275 4.316205 TGCAGAAAAGACTGTTCTACGA 57.684 40.909 7.60 0.00 39.73 3.43
5110 11276 4.883083 TGCAGAAAAGACTGTTCTACGAT 58.117 39.130 7.60 0.00 39.73 3.73
5111 11277 5.297547 TGCAGAAAAGACTGTTCTACGATT 58.702 37.500 7.60 0.00 39.73 3.34
5113 11279 6.260050 TGCAGAAAAGACTGTTCTACGATTTT 59.740 34.615 7.60 0.00 39.73 1.82
5114 11280 6.575201 GCAGAAAAGACTGTTCTACGATTTTG 59.425 38.462 7.60 0.00 39.73 2.44
5115 11281 7.630924 CAGAAAAGACTGTTCTACGATTTTGT 58.369 34.615 7.60 0.00 33.53 2.83
5116 11282 8.122952 CAGAAAAGACTGTTCTACGATTTTGTT 58.877 33.333 7.60 0.00 33.53 2.83
5118 11284 6.920569 AAGACTGTTCTACGATTTTGTTGT 57.079 33.333 0.00 0.00 0.00 3.32
5120 11286 7.639162 AGACTGTTCTACGATTTTGTTGTAG 57.361 36.000 0.00 0.00 43.50 2.74
5127 11293 6.884187 TCTACGATTTTGTTGTAGAAAGCAC 58.116 36.000 3.30 0.00 46.27 4.40
5128 11294 5.751243 ACGATTTTGTTGTAGAAAGCACT 57.249 34.783 0.00 0.00 0.00 4.40
5129 11295 5.510671 ACGATTTTGTTGTAGAAAGCACTG 58.489 37.500 0.00 0.00 0.00 3.66
5130 11296 5.295787 ACGATTTTGTTGTAGAAAGCACTGA 59.704 36.000 0.00 0.00 0.00 3.41
5132 11298 6.857964 CGATTTTGTTGTAGAAAGCACTGATT 59.142 34.615 0.00 0.00 0.00 2.57
5133 11299 7.379529 CGATTTTGTTGTAGAAAGCACTGATTT 59.620 33.333 0.00 0.00 0.00 2.17
5134 11300 7.985634 TTTTGTTGTAGAAAGCACTGATTTC 57.014 32.000 11.14 11.14 38.09 2.17
5135 11301 5.342806 TGTTGTAGAAAGCACTGATTTCG 57.657 39.130 12.85 0.00 41.92 3.46
5136 11302 4.151798 GTTGTAGAAAGCACTGATTTCGC 58.848 43.478 12.85 10.78 41.92 4.70
5137 11303 2.411748 TGTAGAAAGCACTGATTTCGCG 59.588 45.455 12.85 0.00 41.92 5.87
5138 11304 0.166814 AGAAAGCACTGATTTCGCGC 59.833 50.000 12.85 0.00 41.92 6.86
5139 11305 0.794605 GAAAGCACTGATTTCGCGCC 60.795 55.000 0.00 0.00 28.61 6.53
5140 11306 1.237285 AAAGCACTGATTTCGCGCCT 61.237 50.000 0.00 0.00 0.00 5.52
5141 11307 0.391130 AAGCACTGATTTCGCGCCTA 60.391 50.000 0.00 0.00 0.00 3.93
5142 11308 0.391130 AGCACTGATTTCGCGCCTAA 60.391 50.000 0.00 0.00 0.00 2.69
5143 11309 0.657840 GCACTGATTTCGCGCCTAAT 59.342 50.000 0.00 0.79 0.00 1.73
5144 11310 1.333258 GCACTGATTTCGCGCCTAATC 60.333 52.381 17.63 17.63 0.00 1.75
5145 11311 1.933181 CACTGATTTCGCGCCTAATCA 59.067 47.619 22.81 22.81 38.17 2.57
5146 11312 2.545526 CACTGATTTCGCGCCTAATCAT 59.454 45.455 23.85 15.11 39.34 2.45
5147 11313 3.002656 CACTGATTTCGCGCCTAATCATT 59.997 43.478 23.85 18.43 39.34 2.57
5149 11315 3.951306 TGATTTCGCGCCTAATCATTTG 58.049 40.909 21.32 0.00 36.22 2.32
5151 11317 1.090728 TTCGCGCCTAATCATTTGCA 58.909 45.000 0.00 0.00 0.00 4.08
5152 11318 0.657312 TCGCGCCTAATCATTTGCAG 59.343 50.000 0.00 0.00 0.00 4.41
5153 11319 0.657312 CGCGCCTAATCATTTGCAGA 59.343 50.000 0.00 0.00 0.00 4.26
5155 11321 2.477694 CGCGCCTAATCATTTGCAGAAA 60.478 45.455 0.00 0.00 0.00 2.52
5156 11322 3.510719 GCGCCTAATCATTTGCAGAAAA 58.489 40.909 0.00 0.00 0.00 2.29
5157 11323 3.304293 GCGCCTAATCATTTGCAGAAAAC 59.696 43.478 0.00 0.00 0.00 2.43
5158 11324 4.484236 CGCCTAATCATTTGCAGAAAACA 58.516 39.130 0.00 0.00 0.00 2.83
5159 11325 4.324402 CGCCTAATCATTTGCAGAAAACAC 59.676 41.667 0.00 0.00 0.00 3.32
5160 11326 4.627035 GCCTAATCATTTGCAGAAAACACC 59.373 41.667 0.00 0.00 0.00 4.16
5161 11327 5.782047 CCTAATCATTTGCAGAAAACACCA 58.218 37.500 0.00 0.00 0.00 4.17
5162 11328 6.222389 CCTAATCATTTGCAGAAAACACCAA 58.778 36.000 0.00 0.00 0.00 3.67
5164 11330 5.989551 ATCATTTGCAGAAAACACCAAAC 57.010 34.783 0.00 0.00 30.92 2.93
5165 11331 4.187694 TCATTTGCAGAAAACACCAAACC 58.812 39.130 0.00 0.00 30.92 3.27
5166 11332 3.971245 TTTGCAGAAAACACCAAACCT 57.029 38.095 0.00 0.00 0.00 3.50
5167 11333 3.971245 TTGCAGAAAACACCAAACCTT 57.029 38.095 0.00 0.00 0.00 3.50
5169 11335 3.096092 TGCAGAAAACACCAAACCTTCT 58.904 40.909 0.00 0.00 0.00 2.85
5170 11336 3.119173 TGCAGAAAACACCAAACCTTCTG 60.119 43.478 5.89 5.89 43.74 3.02
5173 11339 4.864247 CAGAAAACACCAAACCTTCTGTTG 59.136 41.667 0.00 0.00 38.66 3.33
5179 11345 1.341080 CAAACCTTCTGTTGGGGCAT 58.659 50.000 0.00 0.00 37.23 4.40
5180 11346 1.693606 CAAACCTTCTGTTGGGGCATT 59.306 47.619 0.00 0.00 37.23 3.56
5181 11347 2.101640 AACCTTCTGTTGGGGCATTT 57.898 45.000 0.00 0.00 35.31 2.32
5182 11348 2.101640 ACCTTCTGTTGGGGCATTTT 57.898 45.000 0.00 0.00 0.00 1.82
5183 11349 3.252554 ACCTTCTGTTGGGGCATTTTA 57.747 42.857 0.00 0.00 0.00 1.52
5185 11351 3.578282 ACCTTCTGTTGGGGCATTTTAAG 59.422 43.478 0.00 0.00 0.00 1.85
5186 11352 3.588955 CTTCTGTTGGGGCATTTTAAGC 58.411 45.455 0.00 0.00 0.00 3.09
5187 11353 2.603021 TCTGTTGGGGCATTTTAAGCA 58.397 42.857 0.00 0.00 0.00 3.91
5188 11354 2.298729 TCTGTTGGGGCATTTTAAGCAC 59.701 45.455 0.00 0.00 33.73 4.40
5189 11355 2.299867 CTGTTGGGGCATTTTAAGCACT 59.700 45.455 0.00 0.00 35.24 4.40
5190 11356 3.501349 TGTTGGGGCATTTTAAGCACTA 58.499 40.909 0.00 0.00 35.24 2.74
5191 11357 4.093011 TGTTGGGGCATTTTAAGCACTAT 58.907 39.130 0.00 0.00 35.24 2.12
5192 11358 4.530161 TGTTGGGGCATTTTAAGCACTATT 59.470 37.500 0.00 0.00 35.24 1.73
5195 11361 6.403866 TGGGGCATTTTAAGCACTATTATG 57.596 37.500 0.00 0.00 35.24 1.90
5197 11363 6.040391 TGGGGCATTTTAAGCACTATTATGAC 59.960 38.462 0.00 0.00 35.24 3.06
5198 11364 6.040391 GGGGCATTTTAAGCACTATTATGACA 59.960 38.462 0.00 0.00 35.24 3.58
5199 11365 7.141363 GGGCATTTTAAGCACTATTATGACAG 58.859 38.462 0.00 0.00 31.20 3.51
5200 11366 7.141363 GGCATTTTAAGCACTATTATGACAGG 58.859 38.462 0.00 0.00 0.00 4.00
5201 11367 7.201821 GGCATTTTAAGCACTATTATGACAGGT 60.202 37.037 0.00 0.00 0.00 4.00
5202 11368 7.645340 GCATTTTAAGCACTATTATGACAGGTG 59.355 37.037 0.00 0.00 0.00 4.00
5203 11369 7.624360 TTTTAAGCACTATTATGACAGGTGG 57.376 36.000 0.00 0.00 0.00 4.61
5204 11370 3.845781 AGCACTATTATGACAGGTGGG 57.154 47.619 0.00 0.00 0.00 4.61
5205 11371 2.439507 AGCACTATTATGACAGGTGGGG 59.560 50.000 0.00 0.00 0.00 4.96
5206 11372 2.851195 CACTATTATGACAGGTGGGGC 58.149 52.381 0.00 0.00 0.00 5.80
5207 11373 1.774856 ACTATTATGACAGGTGGGGCC 59.225 52.381 0.00 0.00 37.58 5.80
5208 11374 1.073923 CTATTATGACAGGTGGGGCCC 59.926 57.143 18.17 18.17 38.26 5.80
5214 11380 2.283173 CAGGTGGGGCCCTGTTTC 60.283 66.667 25.93 4.58 45.81 2.78
5216 11382 4.280019 GGTGGGGCCCTGTTTCGT 62.280 66.667 25.93 0.00 0.00 3.85
5217 11383 2.671963 GTGGGGCCCTGTTTCGTC 60.672 66.667 25.93 1.93 0.00 4.20
5219 11385 1.536907 TGGGGCCCTGTTTCGTCTA 60.537 57.895 25.93 0.00 0.00 2.59
5221 11387 1.447314 GGGCCCTGTTTCGTCTACG 60.447 63.158 17.04 0.00 41.45 3.51
5225 11391 1.012486 CCCTGTTTCGTCTACGTGGC 61.012 60.000 0.00 0.00 40.80 5.01
5226 11392 1.342082 CCTGTTTCGTCTACGTGGCG 61.342 60.000 0.00 3.66 46.47 5.69
5227 11393 0.662374 CTGTTTCGTCTACGTGGCGT 60.662 55.000 13.35 0.00 45.15 5.68
5228 11394 0.661187 TGTTTCGTCTACGTGGCGTC 60.661 55.000 13.35 7.85 45.15 5.19
5230 11396 0.661187 TTTCGTCTACGTGGCGTCAC 60.661 55.000 10.89 10.89 45.15 3.67
5253 11419 2.483745 CGAGCTGACGCCGTCTAA 59.516 61.111 19.12 0.00 36.60 2.10
5254 11420 1.868251 CGAGCTGACGCCGTCTAAC 60.868 63.158 19.12 7.65 36.60 2.34
5255 11421 1.868251 GAGCTGACGCCGTCTAACG 60.868 63.158 19.12 5.53 42.11 3.18
5264 11430 2.872925 CGTCTAACGGCGTGACGG 60.873 66.667 32.34 19.87 46.45 4.79
5289 11455 2.986979 TGCTCCGCCGTGTGAGTA 60.987 61.111 0.00 0.00 0.00 2.59
5290 11456 2.260434 GCTCCGCCGTGTGAGTAA 59.740 61.111 0.00 0.00 0.00 2.24
5291 11457 1.373748 GCTCCGCCGTGTGAGTAAA 60.374 57.895 0.00 0.00 0.00 2.01
5292 11458 0.947180 GCTCCGCCGTGTGAGTAAAA 60.947 55.000 0.00 0.00 0.00 1.52
5293 11459 1.504359 CTCCGCCGTGTGAGTAAAAA 58.496 50.000 0.00 0.00 0.00 1.94
5294 11460 1.193874 CTCCGCCGTGTGAGTAAAAAC 59.806 52.381 0.00 0.00 0.00 2.43
5296 11462 1.070175 CCGCCGTGTGAGTAAAAACTG 60.070 52.381 0.00 0.00 0.00 3.16
5299 11465 2.812011 GCCGTGTGAGTAAAAACTGGAT 59.188 45.455 0.00 0.00 0.00 3.41
5300 11466 3.120304 GCCGTGTGAGTAAAAACTGGATC 60.120 47.826 0.00 0.00 0.00 3.36
5301 11467 3.122948 CCGTGTGAGTAAAAACTGGATCG 59.877 47.826 0.00 0.00 0.00 3.69
5303 11469 4.625742 CGTGTGAGTAAAAACTGGATCGAT 59.374 41.667 0.00 0.00 0.00 3.59
5315 11481 0.887933 GGATCGATCCAGCTCTCTCC 59.112 60.000 34.65 9.05 46.38 3.71
5316 11482 1.547675 GGATCGATCCAGCTCTCTCCT 60.548 57.143 34.65 0.00 46.38 3.69
5317 11483 1.812571 GATCGATCCAGCTCTCTCCTC 59.187 57.143 14.76 0.00 0.00 3.71
5318 11484 0.548510 TCGATCCAGCTCTCTCCTCA 59.451 55.000 0.00 0.00 0.00 3.86
5320 11486 1.774110 GATCCAGCTCTCTCCTCACA 58.226 55.000 0.00 0.00 0.00 3.58
5321 11487 1.408702 GATCCAGCTCTCTCCTCACAC 59.591 57.143 0.00 0.00 0.00 3.82
5322 11488 0.407528 TCCAGCTCTCTCCTCACACT 59.592 55.000 0.00 0.00 0.00 3.55
5323 11489 0.817013 CCAGCTCTCTCCTCACACTC 59.183 60.000 0.00 0.00 0.00 3.51
5324 11490 1.616725 CCAGCTCTCTCCTCACACTCT 60.617 57.143 0.00 0.00 0.00 3.24
5325 11491 1.745087 CAGCTCTCTCCTCACACTCTC 59.255 57.143 0.00 0.00 0.00 3.20
5326 11492 0.732571 GCTCTCTCCTCACACTCTCG 59.267 60.000 0.00 0.00 0.00 4.04
5327 11493 0.732571 CTCTCTCCTCACACTCTCGC 59.267 60.000 0.00 0.00 0.00 5.03
5328 11494 0.678366 TCTCTCCTCACACTCTCGCC 60.678 60.000 0.00 0.00 0.00 5.54
5330 11496 0.678366 TCTCCTCACACTCTCGCCTC 60.678 60.000 0.00 0.00 0.00 4.70
5332 11498 0.962855 TCCTCACACTCTCGCCTCTG 60.963 60.000 0.00 0.00 0.00 3.35
5333 11499 1.153862 CTCACACTCTCGCCTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
5334 11500 2.125753 CACACTCTCGCCTCTGCC 60.126 66.667 0.00 0.00 0.00 4.85
5335 11501 2.283532 ACACTCTCGCCTCTGCCT 60.284 61.111 0.00 0.00 0.00 4.75
5336 11502 2.347322 ACACTCTCGCCTCTGCCTC 61.347 63.158 0.00 0.00 0.00 4.70
5337 11503 3.137459 ACTCTCGCCTCTGCCTCG 61.137 66.667 0.00 0.00 0.00 4.63
5338 11504 4.567385 CTCTCGCCTCTGCCTCGC 62.567 72.222 0.00 0.00 0.00 5.03
5344 11510 3.535962 CCTCTGCCTCGCCCTCTC 61.536 72.222 0.00 0.00 0.00 3.20
5345 11511 3.535962 CTCTGCCTCGCCCTCTCC 61.536 72.222 0.00 0.00 0.00 3.71
5346 11512 4.067512 TCTGCCTCGCCCTCTCCT 62.068 66.667 0.00 0.00 0.00 3.69
5347 11513 3.535962 CTGCCTCGCCCTCTCCTC 61.536 72.222 0.00 0.00 0.00 3.71
5348 11514 4.382541 TGCCTCGCCCTCTCCTCA 62.383 66.667 0.00 0.00 0.00 3.86
5349 11515 3.844090 GCCTCGCCCTCTCCTCAC 61.844 72.222 0.00 0.00 0.00 3.51
5351 11517 2.124693 CCTCGCCCTCTCCTCACTC 61.125 68.421 0.00 0.00 0.00 3.51
5354 11520 1.680651 CGCCCTCTCCTCACTCTGT 60.681 63.158 0.00 0.00 0.00 3.41
5356 11522 0.534873 GCCCTCTCCTCACTCTGTTC 59.465 60.000 0.00 0.00 0.00 3.18
5357 11523 1.894978 GCCCTCTCCTCACTCTGTTCT 60.895 57.143 0.00 0.00 0.00 3.01
5358 11524 2.534990 CCCTCTCCTCACTCTGTTCTT 58.465 52.381 0.00 0.00 0.00 2.52
5359 11525 2.495669 CCCTCTCCTCACTCTGTTCTTC 59.504 54.545 0.00 0.00 0.00 2.87
5360 11526 3.430453 CCTCTCCTCACTCTGTTCTTCT 58.570 50.000 0.00 0.00 0.00 2.85
5361 11527 3.443681 CCTCTCCTCACTCTGTTCTTCTC 59.556 52.174 0.00 0.00 0.00 2.87
5362 11528 3.426615 TCTCCTCACTCTGTTCTTCTCC 58.573 50.000 0.00 0.00 0.00 3.71
5363 11529 2.495669 CTCCTCACTCTGTTCTTCTCCC 59.504 54.545 0.00 0.00 0.00 4.30
5364 11530 1.552792 CCTCACTCTGTTCTTCTCCCC 59.447 57.143 0.00 0.00 0.00 4.81
5366 11532 0.247736 CACTCTGTTCTTCTCCCCCG 59.752 60.000 0.00 0.00 0.00 5.73
5367 11533 0.905337 ACTCTGTTCTTCTCCCCCGG 60.905 60.000 0.00 0.00 0.00 5.73
5368 11534 2.245438 CTCTGTTCTTCTCCCCCGGC 62.245 65.000 0.00 0.00 0.00 6.13
5369 11535 3.665675 CTGTTCTTCTCCCCCGGCG 62.666 68.421 0.00 0.00 0.00 6.46
5416 11582 4.802051 CTCCCCGGTGCCATGGTG 62.802 72.222 14.67 0.93 0.00 4.17
5420 11586 4.697756 CCGGTGCCATGGTGTCGT 62.698 66.667 14.67 0.00 0.00 4.34
5429 11595 1.008875 CATGGTGTCGTGGAGTGACG 61.009 60.000 0.00 0.00 39.22 4.35
5430 11596 1.176619 ATGGTGTCGTGGAGTGACGA 61.177 55.000 0.00 0.00 45.84 4.20
5434 11600 3.664495 TCGTGGAGTGACGAGACC 58.336 61.111 0.00 0.00 43.26 3.85
5436 11602 1.210413 CGTGGAGTGACGAGACCAG 59.790 63.158 0.00 0.00 42.10 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179234 GCCCTCTAGGTGCTCCTTTC 59.821 60.000 13.50 0.00 42.12 2.62
1 2 1.617947 CGCCCTCTAGGTGCTCCTTT 61.618 60.000 13.50 0.00 42.12 3.11
3 4 2.997584 TCGCCCTCTAGGTGCTCCT 61.998 63.158 12.79 12.79 46.60 3.69
4 5 2.442272 TCGCCCTCTAGGTGCTCC 60.442 66.667 0.00 0.00 46.60 4.70
5 6 2.052690 TGTCGCCCTCTAGGTGCTC 61.053 63.158 7.57 0.00 46.60 4.26
6 7 2.037367 TGTCGCCCTCTAGGTGCT 59.963 61.111 7.57 0.00 46.60 4.40
7 8 1.889530 AAGTGTCGCCCTCTAGGTGC 61.890 60.000 0.00 0.00 46.60 5.01
10 11 1.153549 GCAAGTGTCGCCCTCTAGG 60.154 63.158 0.00 0.00 39.47 3.02
11 12 1.153549 GGCAAGTGTCGCCCTCTAG 60.154 63.158 0.00 0.00 44.22 2.43
35 36 2.460330 CCACTTGGCGCTCACTTAG 58.540 57.895 7.64 0.99 0.00 2.18
36 37 4.693532 CCACTTGGCGCTCACTTA 57.306 55.556 7.64 0.00 0.00 2.24
46 47 3.965539 CTGGGAGAGCGCCACTTGG 62.966 68.421 2.29 0.00 38.53 3.61
47 48 2.435586 CTGGGAGAGCGCCACTTG 60.436 66.667 2.29 0.00 0.00 3.16
48 49 4.400961 GCTGGGAGAGCGCCACTT 62.401 66.667 2.29 0.00 38.15 3.16
56 57 0.106819 CTTTGGATGGGCTGGGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
57 58 0.846427 ACTTTGGATGGGCTGGGAGA 60.846 55.000 0.00 0.00 0.00 3.71
58 59 0.682209 CACTTTGGATGGGCTGGGAG 60.682 60.000 0.00 0.00 0.00 4.30
59 60 1.139498 TCACTTTGGATGGGCTGGGA 61.139 55.000 0.00 0.00 0.00 4.37
60 61 0.967380 GTCACTTTGGATGGGCTGGG 60.967 60.000 0.00 0.00 0.00 4.45
61 62 0.967380 GGTCACTTTGGATGGGCTGG 60.967 60.000 0.00 0.00 0.00 4.85
62 63 0.967380 GGGTCACTTTGGATGGGCTG 60.967 60.000 0.00 0.00 0.00 4.85
63 64 1.142688 AGGGTCACTTTGGATGGGCT 61.143 55.000 0.00 0.00 0.00 5.19
64 65 0.681243 GAGGGTCACTTTGGATGGGC 60.681 60.000 0.00 0.00 0.00 5.36
65 66 0.995024 AGAGGGTCACTTTGGATGGG 59.005 55.000 0.00 0.00 0.00 4.00
66 67 2.119801 CAGAGGGTCACTTTGGATGG 57.880 55.000 0.00 0.00 0.00 3.51
90 91 1.666700 CAACGAGTACTCCTCCGAGAG 59.333 57.143 17.23 3.13 38.52 3.20
91 92 1.277273 TCAACGAGTACTCCTCCGAGA 59.723 52.381 17.23 7.26 38.52 4.04
92 93 1.735386 TCAACGAGTACTCCTCCGAG 58.265 55.000 17.23 4.57 42.32 4.63
93 94 2.414994 ATCAACGAGTACTCCTCCGA 57.585 50.000 17.23 9.01 36.82 4.55
94 95 4.832590 AATATCAACGAGTACTCCTCCG 57.167 45.455 17.23 8.65 36.82 4.63
95 96 8.937634 TTAAAAATATCAACGAGTACTCCTCC 57.062 34.615 17.23 0.00 36.82 4.30
96 97 9.032420 CCTTAAAAATATCAACGAGTACTCCTC 57.968 37.037 17.23 0.00 36.80 3.71
97 98 7.985752 CCCTTAAAAATATCAACGAGTACTCCT 59.014 37.037 17.23 2.73 0.00 3.69
98 99 7.226128 CCCCTTAAAAATATCAACGAGTACTCC 59.774 40.741 17.23 0.00 0.00 3.85
99 100 7.767659 ACCCCTTAAAAATATCAACGAGTACTC 59.232 37.037 13.18 13.18 0.00 2.59
100 101 7.627311 ACCCCTTAAAAATATCAACGAGTACT 58.373 34.615 0.00 0.00 0.00 2.73
101 102 7.854557 ACCCCTTAAAAATATCAACGAGTAC 57.145 36.000 0.00 0.00 0.00 2.73
102 103 8.761689 AGTACCCCTTAAAAATATCAACGAGTA 58.238 33.333 0.00 0.00 0.00 2.59
103 104 7.627311 AGTACCCCTTAAAAATATCAACGAGT 58.373 34.615 0.00 0.00 0.00 4.18
104 105 7.042925 CGAGTACCCCTTAAAAATATCAACGAG 60.043 40.741 0.00 0.00 0.00 4.18
105 106 6.757947 CGAGTACCCCTTAAAAATATCAACGA 59.242 38.462 0.00 0.00 0.00 3.85
106 107 6.536224 ACGAGTACCCCTTAAAAATATCAACG 59.464 38.462 0.00 0.00 0.00 4.10
107 108 7.201670 CCACGAGTACCCCTTAAAAATATCAAC 60.202 40.741 0.00 0.00 0.00 3.18
108 109 6.824704 CCACGAGTACCCCTTAAAAATATCAA 59.175 38.462 0.00 0.00 0.00 2.57
109 110 6.156602 TCCACGAGTACCCCTTAAAAATATCA 59.843 38.462 0.00 0.00 0.00 2.15
110 111 6.585416 TCCACGAGTACCCCTTAAAAATATC 58.415 40.000 0.00 0.00 0.00 1.63
111 112 6.564557 TCCACGAGTACCCCTTAAAAATAT 57.435 37.500 0.00 0.00 0.00 1.28
112 113 6.564557 ATCCACGAGTACCCCTTAAAAATA 57.435 37.500 0.00 0.00 0.00 1.40
113 114 4.914177 TCCACGAGTACCCCTTAAAAAT 57.086 40.909 0.00 0.00 0.00 1.82
114 115 4.914177 ATCCACGAGTACCCCTTAAAAA 57.086 40.909 0.00 0.00 0.00 1.94
115 116 4.914177 AATCCACGAGTACCCCTTAAAA 57.086 40.909 0.00 0.00 0.00 1.52
116 117 5.025453 ACTAATCCACGAGTACCCCTTAAA 58.975 41.667 0.00 0.00 0.00 1.52
117 118 4.613437 ACTAATCCACGAGTACCCCTTAA 58.387 43.478 0.00 0.00 0.00 1.85
118 119 4.255510 ACTAATCCACGAGTACCCCTTA 57.744 45.455 0.00 0.00 0.00 2.69
123 124 3.130693 AGAGCAACTAATCCACGAGTACC 59.869 47.826 0.00 0.00 0.00 3.34
132 133 2.930682 GGTTGTCGAGAGCAACTAATCC 59.069 50.000 14.69 0.00 43.09 3.01
146 147 1.227147 ACACGACCACAGGTTGTCG 60.227 57.895 20.22 20.22 46.45 4.35
158 159 2.680913 GGGCACATGAGCACACGAC 61.681 63.158 17.11 0.00 38.00 4.34
161 162 0.890542 TTGAGGGCACATGAGCACAC 60.891 55.000 19.83 13.77 41.46 3.82
175 176 1.162698 CCACTGCACATGACTTGAGG 58.837 55.000 0.00 0.00 0.00 3.86
234 235 4.319046 GCACATATGAGCATAGGTTTGTCG 60.319 45.833 18.76 0.00 36.31 4.35
244 245 2.617308 GCAAGTGAGCACATATGAGCAT 59.383 45.455 24.23 11.32 34.00 3.79
289 290 7.996098 AAAATGTCTTATATTATGGGACGGG 57.004 36.000 0.00 0.00 0.00 5.28
291 292 9.214957 TGCTAAAATGTCTTATATTATGGGACG 57.785 33.333 0.00 0.00 0.00 4.79
344 348 9.495754 GCTATTCATGTATTTTCTCACAAGAAC 57.504 33.333 0.00 0.00 41.23 3.01
565 689 9.406828 CATATATGCAAAGAATGTCCATGAAAG 57.593 33.333 0.00 0.00 0.00 2.62
571 695 6.262944 GGTCACATATATGCAAAGAATGTCCA 59.737 38.462 12.79 0.00 0.00 4.02
661 798 8.691797 GGCCCACTAACTCAAATTTCAATTATA 58.308 33.333 0.00 0.00 0.00 0.98
667 804 2.817258 CGGCCCACTAACTCAAATTTCA 59.183 45.455 0.00 0.00 0.00 2.69
668 805 2.817844 ACGGCCCACTAACTCAAATTTC 59.182 45.455 0.00 0.00 0.00 2.17
691 830 1.335132 TTTAGTAGCCCGGCCTCTGG 61.335 60.000 5.55 0.00 0.00 3.86
692 831 0.105039 CTTTAGTAGCCCGGCCTCTG 59.895 60.000 5.55 0.00 0.00 3.35
699 838 2.019984 ACGGTAGACTTTAGTAGCCCG 58.980 52.381 10.31 10.31 37.39 6.13
702 841 4.670347 CCTCAACGGTAGACTTTAGTAGC 58.330 47.826 0.00 0.00 0.00 3.58
704 843 3.127548 CGCCTCAACGGTAGACTTTAGTA 59.872 47.826 0.00 0.00 34.25 1.82
931 1237 4.382541 GAGGGGGCTTTGGGGGTG 62.383 72.222 0.00 0.00 0.00 4.61
932 1238 4.635963 AGAGGGGGCTTTGGGGGT 62.636 66.667 0.00 0.00 0.00 4.95
937 1243 1.209747 GGTAGTACAGAGGGGGCTTTG 59.790 57.143 2.06 0.00 0.00 2.77
938 1244 1.581223 GGTAGTACAGAGGGGGCTTT 58.419 55.000 2.06 0.00 0.00 3.51
953 1259 4.159108 AGAGGAGGGGCGGGGTAG 62.159 72.222 0.00 0.00 0.00 3.18
954 1260 4.153330 GAGAGGAGGGGCGGGGTA 62.153 72.222 0.00 0.00 0.00 3.69
958 1264 2.770048 AATGGAGAGGAGGGGCGG 60.770 66.667 0.00 0.00 0.00 6.13
960 1266 0.990818 AAGGAATGGAGAGGAGGGGC 60.991 60.000 0.00 0.00 0.00 5.80
1078 1387 4.950050 AGATTGAGTTAAGTATGGAGCGG 58.050 43.478 0.00 0.00 0.00 5.52
1087 1396 8.870075 AATTAAAGCTGGAGATTGAGTTAAGT 57.130 30.769 0.00 0.00 0.00 2.24
1126 1436 1.618640 GGTCAGAGCGACGAAGCAAC 61.619 60.000 0.00 3.64 46.42 4.17
1130 1440 1.714794 AATTGGTCAGAGCGACGAAG 58.285 50.000 0.00 0.00 44.32 3.79
1158 1468 3.694072 TGCAAAATAAGCAGCGGATAAGT 59.306 39.130 0.00 0.00 37.02 2.24
1162 1472 2.223876 CCATGCAAAATAAGCAGCGGAT 60.224 45.455 0.00 0.00 46.36 4.18
1216 1537 1.624336 AACCACATCAAGCACAGCAT 58.376 45.000 0.00 0.00 0.00 3.79
1267 1593 2.355310 CGGGTCCAAACCTGCTACATAA 60.355 50.000 0.00 0.00 44.90 1.90
1270 1596 1.373435 CGGGTCCAAACCTGCTACA 59.627 57.895 0.00 0.00 44.90 2.74
1271 1597 4.296265 CGGGTCCAAACCTGCTAC 57.704 61.111 0.00 0.00 44.90 3.58
1276 1602 1.432023 ATTCACCCGGGTCCAAACCT 61.432 55.000 27.51 1.54 45.66 3.50
1277 1603 0.963856 GATTCACCCGGGTCCAAACC 60.964 60.000 27.51 5.75 45.65 3.27
1280 1606 1.131303 ACTGATTCACCCGGGTCCAA 61.131 55.000 27.51 20.39 0.00 3.53
1281 1607 1.131303 AACTGATTCACCCGGGTCCA 61.131 55.000 27.51 17.92 0.00 4.02
1282 1608 0.392595 GAACTGATTCACCCGGGTCC 60.393 60.000 27.51 13.97 34.70 4.46
1283 1609 0.323629 TGAACTGATTCACCCGGGTC 59.676 55.000 27.51 13.93 40.01 4.46
1285 1611 0.324943 ACTGAACTGATTCACCCGGG 59.675 55.000 22.25 22.25 40.01 5.73
1287 1613 0.798776 GCACTGAACTGATTCACCCG 59.201 55.000 0.00 0.00 40.01 5.28
1289 1615 3.341823 AGATGCACTGAACTGATTCACC 58.658 45.455 0.00 0.00 40.01 4.02
1302 1628 3.947868 AGTCACAAATAGCAGATGCACT 58.052 40.909 7.68 0.00 45.16 4.40
1303 1629 5.998454 ATAGTCACAAATAGCAGATGCAC 57.002 39.130 7.68 0.00 45.16 4.57
1304 1630 5.991606 GGTATAGTCACAAATAGCAGATGCA 59.008 40.000 7.68 0.00 45.16 3.96
1305 1631 6.226787 AGGTATAGTCACAAATAGCAGATGC 58.773 40.000 0.00 0.00 42.49 3.91
1381 1716 0.830444 ACTCTAACCTCCCGTGTGCA 60.830 55.000 0.00 0.00 0.00 4.57
1618 1973 6.681729 ATACCAAACAGAGGTGAGTAAGAA 57.318 37.500 0.00 0.00 40.26 2.52
1764 2119 3.003689 AGCTTGGAAGACAACAATCAACG 59.996 43.478 0.00 0.00 34.76 4.10
1958 2330 7.066645 ACAAAAGTAGGTCTTCCAAACTAACAC 59.933 37.037 0.00 0.00 35.02 3.32
2290 3067 8.997323 AGATTACAAACAGAACTCTTGATTCAG 58.003 33.333 0.00 0.00 0.00 3.02
2322 3551 4.439305 TGCATAAAATGAGTTCAGCCAC 57.561 40.909 0.00 0.00 0.00 5.01
2737 3974 7.359849 TGTAGGTGGTAAGAATAGTAGGTGAT 58.640 38.462 0.00 0.00 0.00 3.06
2818 4060 2.073816 GGCACCATGTACACACTACAC 58.926 52.381 0.00 0.00 0.00 2.90
2819 4061 1.694696 TGGCACCATGTACACACTACA 59.305 47.619 0.00 0.00 0.00 2.74
2820 4062 2.465860 TGGCACCATGTACACACTAC 57.534 50.000 0.00 0.00 0.00 2.73
2821 4063 2.837591 AGATGGCACCATGTACACACTA 59.162 45.455 6.96 0.00 36.70 2.74
2822 4064 1.630369 AGATGGCACCATGTACACACT 59.370 47.619 6.96 0.00 36.70 3.55
2823 4065 2.113860 AGATGGCACCATGTACACAC 57.886 50.000 6.96 0.00 36.70 3.82
2824 4066 2.877097 AAGATGGCACCATGTACACA 57.123 45.000 6.96 0.00 36.70 3.72
2935 4179 2.886523 CAAAGCAAGATGTGGACCTTGA 59.113 45.455 0.00 0.00 41.56 3.02
3103 4348 2.833794 TCAGTCTTGGGTTTGAGTTCG 58.166 47.619 0.00 0.00 0.00 3.95
3116 4361 7.360101 CGAGAAAAACAAACGGATATCAGTCTT 60.360 37.037 9.03 3.83 0.00 3.01
3128 4373 4.525411 ACTGTACCGAGAAAAACAAACG 57.475 40.909 0.00 0.00 0.00 3.60
3141 4388 3.390135 ACATCACTGACAAACTGTACCG 58.610 45.455 0.00 0.00 0.00 4.02
3291 4539 8.398665 CAGCTAAGTATGGGAGAACAAAATTAC 58.601 37.037 0.00 0.00 0.00 1.89
3299 4547 5.974108 TGTTACAGCTAAGTATGGGAGAAC 58.026 41.667 0.00 0.00 0.00 3.01
3638 6328 8.966868 CAAATTACCTACCAAAACAGGATACAT 58.033 33.333 0.00 0.00 41.41 2.29
3709 6406 7.615365 ACCATGTTGTAATCATCAACCTACATT 59.385 33.333 6.38 0.00 42.82 2.71
3825 6522 3.582780 CAGAAAAGAAGGAATGCTTGGC 58.417 45.455 0.00 0.00 0.00 4.52
3877 6576 5.668471 CATGTCTAAGGATCAGAAGCTCAA 58.332 41.667 0.00 0.00 0.00 3.02
3882 6581 6.403866 AGTAGCATGTCTAAGGATCAGAAG 57.596 41.667 0.00 0.00 0.00 2.85
4120 7272 5.832595 TCATCTCAAGGTGGAAATTTTCACA 59.167 36.000 27.00 9.32 35.74 3.58
4122 7274 7.015487 ACAATCATCTCAAGGTGGAAATTTTCA 59.985 33.333 11.09 0.00 0.00 2.69
4191 7343 2.565210 TTTGTTTCACTGCAGCACTG 57.435 45.000 15.27 4.87 0.00 3.66
4237 7564 1.444895 CAGCACGGCAAATGGAAGC 60.445 57.895 0.00 0.00 0.00 3.86
4283 7641 8.706322 AAAACACAACCAGGTAGATAAATCTT 57.294 30.769 0.00 0.00 38.32 2.40
4468 7859 4.347876 TGGACCCATTCTACATGATACTGG 59.652 45.833 0.00 0.00 0.00 4.00
4560 7997 2.931969 CACACTCTTCGCAGATGCATTA 59.068 45.455 0.00 0.00 42.21 1.90
4638 9782 0.034616 GCTCCGGAAGAGGATGATGG 59.965 60.000 5.23 0.00 43.46 3.51
4723 9892 4.213059 GTGTTCAGAAAGAAAGGAGCAGAG 59.787 45.833 0.00 0.00 38.13 3.35
4778 9972 6.989169 GCTATACAATCTGACAGACTTTCCAT 59.011 38.462 7.47 0.00 0.00 3.41
4903 10103 4.033358 CGTATGCTTTCACTCTGTCCATTC 59.967 45.833 0.00 0.00 0.00 2.67
4930 10130 1.272781 GTTCAGCGAAGACGGAGATG 58.727 55.000 0.00 0.00 40.15 2.90
4936 10136 0.109873 ACGTAGGTTCAGCGAAGACG 60.110 55.000 13.48 13.48 42.93 4.18
4944 10498 3.373748 TGCATGCATTAACGTAGGTTCAG 59.626 43.478 18.46 0.00 37.58 3.02
4947 10501 4.025229 CGTATGCATGCATTAACGTAGGTT 60.025 41.667 36.23 12.65 35.15 3.50
5061 11227 2.771372 AGGCTTCAATGTGGTGGTTTTT 59.229 40.909 0.00 0.00 0.00 1.94
5062 11228 2.397597 AGGCTTCAATGTGGTGGTTTT 58.602 42.857 0.00 0.00 0.00 2.43
5063 11229 2.086610 AGGCTTCAATGTGGTGGTTT 57.913 45.000 0.00 0.00 0.00 3.27
5065 11231 1.004745 CCTAGGCTTCAATGTGGTGGT 59.995 52.381 0.00 0.00 0.00 4.16
5066 11232 1.683011 CCCTAGGCTTCAATGTGGTGG 60.683 57.143 2.05 0.00 0.00 4.61
5067 11233 1.004745 ACCCTAGGCTTCAATGTGGTG 59.995 52.381 2.05 0.00 0.00 4.17
5068 11234 1.372501 ACCCTAGGCTTCAATGTGGT 58.627 50.000 2.05 0.00 0.00 4.16
5070 11236 1.474077 GCAACCCTAGGCTTCAATGTG 59.526 52.381 2.05 0.00 0.00 3.21
5071 11237 1.075374 TGCAACCCTAGGCTTCAATGT 59.925 47.619 2.05 0.00 0.00 2.71
5076 11242 2.200373 TTTCTGCAACCCTAGGCTTC 57.800 50.000 2.05 0.00 0.00 3.86
5079 11245 1.813178 GTCTTTTCTGCAACCCTAGGC 59.187 52.381 2.05 0.00 0.00 3.93
5080 11246 3.077359 CAGTCTTTTCTGCAACCCTAGG 58.923 50.000 0.06 0.06 0.00 3.02
5081 11247 3.744660 ACAGTCTTTTCTGCAACCCTAG 58.255 45.455 0.00 0.00 38.84 3.02
5082 11248 3.857157 ACAGTCTTTTCTGCAACCCTA 57.143 42.857 0.00 0.00 38.84 3.53
5083 11249 2.736670 ACAGTCTTTTCTGCAACCCT 57.263 45.000 0.00 0.00 38.84 4.34
5085 11251 4.318831 CGTAGAACAGTCTTTTCTGCAACC 60.319 45.833 14.67 0.00 35.95 3.77
5086 11252 4.506654 TCGTAGAACAGTCTTTTCTGCAAC 59.493 41.667 14.67 4.53 35.95 4.17
5087 11253 4.689071 TCGTAGAACAGTCTTTTCTGCAA 58.311 39.130 14.67 0.00 35.95 4.08
5089 11255 5.847670 AATCGTAGAACAGTCTTTTCTGC 57.152 39.130 10.89 8.74 43.58 4.26
5090 11256 7.630924 ACAAAATCGTAGAACAGTCTTTTCTG 58.369 34.615 10.89 0.00 43.58 3.02
5092 11258 7.908601 ACAACAAAATCGTAGAACAGTCTTTTC 59.091 33.333 0.00 0.00 43.58 2.29
5093 11259 7.758495 ACAACAAAATCGTAGAACAGTCTTTT 58.242 30.769 0.00 0.00 43.58 2.27
5095 11261 6.920569 ACAACAAAATCGTAGAACAGTCTT 57.079 33.333 0.00 0.00 43.58 3.01
5096 11262 7.431249 TCTACAACAAAATCGTAGAACAGTCT 58.569 34.615 0.00 0.00 43.58 3.24
5100 11266 7.011576 TGCTTTCTACAACAAAATCGTAGAACA 59.988 33.333 10.00 4.82 46.53 3.18
5101 11267 7.320560 GTGCTTTCTACAACAAAATCGTAGAAC 59.679 37.037 10.00 2.69 46.53 3.01
5102 11268 7.225931 AGTGCTTTCTACAACAAAATCGTAGAA 59.774 33.333 7.05 7.05 45.70 2.10
5104 11270 6.792250 CAGTGCTTTCTACAACAAAATCGTAG 59.208 38.462 0.00 0.00 35.08 3.51
5105 11271 6.480651 TCAGTGCTTTCTACAACAAAATCGTA 59.519 34.615 0.00 0.00 0.00 3.43
5107 11273 5.747565 TCAGTGCTTTCTACAACAAAATCG 58.252 37.500 0.00 0.00 0.00 3.34
5108 11274 8.579682 AAATCAGTGCTTTCTACAACAAAATC 57.420 30.769 0.00 0.00 0.00 2.17
5109 11275 7.379529 CGAAATCAGTGCTTTCTACAACAAAAT 59.620 33.333 15.42 0.00 31.79 1.82
5110 11276 6.690957 CGAAATCAGTGCTTTCTACAACAAAA 59.309 34.615 15.42 0.00 31.79 2.44
5111 11277 6.198687 CGAAATCAGTGCTTTCTACAACAAA 58.801 36.000 15.42 0.00 31.79 2.83
5113 11279 4.319477 GCGAAATCAGTGCTTTCTACAACA 60.319 41.667 15.42 0.00 31.79 3.33
5114 11280 4.151798 GCGAAATCAGTGCTTTCTACAAC 58.848 43.478 15.42 0.00 31.79 3.32
5115 11281 3.120683 CGCGAAATCAGTGCTTTCTACAA 60.121 43.478 15.42 0.00 31.79 2.41
5116 11282 2.411748 CGCGAAATCAGTGCTTTCTACA 59.588 45.455 15.42 0.00 31.79 2.74
5118 11284 1.393539 GCGCGAAATCAGTGCTTTCTA 59.606 47.619 12.10 0.00 41.45 2.10
5120 11286 0.794605 GGCGCGAAATCAGTGCTTTC 60.795 55.000 12.10 9.01 43.87 2.62
5121 11287 1.210155 GGCGCGAAATCAGTGCTTT 59.790 52.632 12.10 0.00 43.87 3.51
5123 11289 0.391130 TTAGGCGCGAAATCAGTGCT 60.391 50.000 12.10 0.00 43.87 4.40
5126 11292 2.309528 TGATTAGGCGCGAAATCAGT 57.690 45.000 24.06 0.00 37.23 3.41
5127 11293 3.885484 AATGATTAGGCGCGAAATCAG 57.115 42.857 28.48 0.00 43.34 2.90
5128 11294 3.791789 GCAAATGATTAGGCGCGAAATCA 60.792 43.478 27.65 27.65 44.00 2.57
5129 11295 2.721090 GCAAATGATTAGGCGCGAAATC 59.279 45.455 20.46 20.46 33.57 2.17
5130 11296 2.098934 TGCAAATGATTAGGCGCGAAAT 59.901 40.909 12.10 5.80 0.00 2.17
5132 11298 1.063912 CTGCAAATGATTAGGCGCGAA 59.936 47.619 12.10 0.00 0.00 4.70
5133 11299 0.657312 CTGCAAATGATTAGGCGCGA 59.343 50.000 12.10 0.00 0.00 5.87
5134 11300 0.657312 TCTGCAAATGATTAGGCGCG 59.343 50.000 0.00 0.00 0.00 6.86
5135 11301 2.849880 TTCTGCAAATGATTAGGCGC 57.150 45.000 0.00 0.00 0.00 6.53
5136 11302 4.324402 GTGTTTTCTGCAAATGATTAGGCG 59.676 41.667 0.00 0.00 0.00 5.52
5137 11303 4.627035 GGTGTTTTCTGCAAATGATTAGGC 59.373 41.667 0.00 0.00 0.00 3.93
5138 11304 5.782047 TGGTGTTTTCTGCAAATGATTAGG 58.218 37.500 0.00 0.00 0.00 2.69
5139 11305 7.307337 GGTTTGGTGTTTTCTGCAAATGATTAG 60.307 37.037 0.00 0.00 0.00 1.73
5140 11306 6.481644 GGTTTGGTGTTTTCTGCAAATGATTA 59.518 34.615 0.00 0.00 0.00 1.75
5141 11307 5.296531 GGTTTGGTGTTTTCTGCAAATGATT 59.703 36.000 0.00 0.00 0.00 2.57
5142 11308 4.815846 GGTTTGGTGTTTTCTGCAAATGAT 59.184 37.500 0.00 0.00 0.00 2.45
5143 11309 4.081198 AGGTTTGGTGTTTTCTGCAAATGA 60.081 37.500 0.00 0.00 0.00 2.57
5144 11310 4.190772 AGGTTTGGTGTTTTCTGCAAATG 58.809 39.130 0.00 0.00 0.00 2.32
5145 11311 4.486125 AGGTTTGGTGTTTTCTGCAAAT 57.514 36.364 0.00 0.00 0.00 2.32
5146 11312 3.971245 AGGTTTGGTGTTTTCTGCAAA 57.029 38.095 0.00 0.00 0.00 3.68
5147 11313 3.513515 AGAAGGTTTGGTGTTTTCTGCAA 59.486 39.130 0.00 0.00 0.00 4.08
5149 11315 3.119137 ACAGAAGGTTTGGTGTTTTCTGC 60.119 43.478 11.27 0.00 45.27 4.26
5151 11317 4.081697 CCAACAGAAGGTTTGGTGTTTTCT 60.082 41.667 0.00 0.00 37.72 2.52
5152 11318 4.180817 CCAACAGAAGGTTTGGTGTTTTC 58.819 43.478 0.00 0.00 37.72 2.29
5153 11319 3.055458 CCCAACAGAAGGTTTGGTGTTTT 60.055 43.478 0.00 0.00 37.48 2.43
5155 11321 2.107366 CCCAACAGAAGGTTTGGTGTT 58.893 47.619 0.00 0.00 37.48 3.32
5156 11322 1.687996 CCCCAACAGAAGGTTTGGTGT 60.688 52.381 0.00 0.00 39.97 4.16
5157 11323 1.039856 CCCCAACAGAAGGTTTGGTG 58.960 55.000 0.00 0.00 39.97 4.17
5158 11324 0.759060 GCCCCAACAGAAGGTTTGGT 60.759 55.000 0.00 0.00 39.97 3.67
5159 11325 0.758685 TGCCCCAACAGAAGGTTTGG 60.759 55.000 0.00 0.00 41.00 3.28
5160 11326 1.341080 ATGCCCCAACAGAAGGTTTG 58.659 50.000 0.00 0.00 37.72 2.93
5161 11327 2.101640 AATGCCCCAACAGAAGGTTT 57.898 45.000 0.00 0.00 37.72 3.27
5162 11328 2.101640 AAATGCCCCAACAGAAGGTT 57.898 45.000 0.00 0.00 41.47 3.50
5164 11330 3.617288 GCTTAAAATGCCCCAACAGAAGG 60.617 47.826 0.00 0.00 0.00 3.46
5165 11331 3.006752 TGCTTAAAATGCCCCAACAGAAG 59.993 43.478 0.00 0.00 0.00 2.85
5166 11332 2.968574 TGCTTAAAATGCCCCAACAGAA 59.031 40.909 0.00 0.00 0.00 3.02
5167 11333 2.298729 GTGCTTAAAATGCCCCAACAGA 59.701 45.455 0.00 0.00 0.00 3.41
5169 11335 2.324541 AGTGCTTAAAATGCCCCAACA 58.675 42.857 0.00 0.00 0.00 3.33
5170 11336 4.736126 ATAGTGCTTAAAATGCCCCAAC 57.264 40.909 0.00 0.00 0.00 3.77
5173 11339 6.040391 TGTCATAATAGTGCTTAAAATGCCCC 59.960 38.462 0.00 0.00 0.00 5.80
5175 11341 7.141363 CCTGTCATAATAGTGCTTAAAATGCC 58.859 38.462 0.00 0.00 0.00 4.40
5176 11342 7.645340 CACCTGTCATAATAGTGCTTAAAATGC 59.355 37.037 0.00 0.00 0.00 3.56
5179 11345 6.601613 CCCACCTGTCATAATAGTGCTTAAAA 59.398 38.462 0.00 0.00 0.00 1.52
5180 11346 6.119536 CCCACCTGTCATAATAGTGCTTAAA 58.880 40.000 0.00 0.00 0.00 1.52
5181 11347 5.397447 CCCCACCTGTCATAATAGTGCTTAA 60.397 44.000 0.00 0.00 0.00 1.85
5182 11348 4.102524 CCCCACCTGTCATAATAGTGCTTA 59.897 45.833 0.00 0.00 0.00 3.09
5183 11349 3.117888 CCCCACCTGTCATAATAGTGCTT 60.118 47.826 0.00 0.00 0.00 3.91
5185 11351 2.851195 CCCCACCTGTCATAATAGTGC 58.149 52.381 0.00 0.00 0.00 4.40
5186 11352 2.487265 GGCCCCACCTGTCATAATAGTG 60.487 54.545 0.00 0.00 34.51 2.74
5187 11353 1.774856 GGCCCCACCTGTCATAATAGT 59.225 52.381 0.00 0.00 34.51 2.12
5188 11354 1.073923 GGGCCCCACCTGTCATAATAG 59.926 57.143 12.23 0.00 39.10 1.73
5189 11355 1.145571 GGGCCCCACCTGTCATAATA 58.854 55.000 12.23 0.00 39.10 0.98
5190 11356 0.627469 AGGGCCCCACCTGTCATAAT 60.627 55.000 21.43 0.00 40.04 1.28
5191 11357 1.230149 AGGGCCCCACCTGTCATAA 60.230 57.895 21.43 0.00 40.04 1.90
5192 11358 2.459230 AGGGCCCCACCTGTCATA 59.541 61.111 21.43 0.00 40.04 2.15
5198 11364 3.966543 CGAAACAGGGCCCCACCT 61.967 66.667 21.43 0.00 43.08 4.00
5199 11365 4.280019 ACGAAACAGGGCCCCACC 62.280 66.667 21.43 2.32 37.93 4.61
5200 11366 1.833787 TAGACGAAACAGGGCCCCAC 61.834 60.000 21.43 4.59 0.00 4.61
5201 11367 1.536907 TAGACGAAACAGGGCCCCA 60.537 57.895 21.43 0.00 0.00 4.96
5202 11368 1.078637 GTAGACGAAACAGGGCCCC 60.079 63.158 21.43 0.30 0.00 5.80
5203 11369 1.447314 CGTAGACGAAACAGGGCCC 60.447 63.158 16.46 16.46 43.02 5.80
5204 11370 1.012486 CACGTAGACGAAACAGGGCC 61.012 60.000 9.41 0.00 43.02 5.80
5205 11371 1.012486 CCACGTAGACGAAACAGGGC 61.012 60.000 9.41 0.00 43.02 5.19
5206 11372 1.012486 GCCACGTAGACGAAACAGGG 61.012 60.000 9.41 1.92 43.02 4.45
5207 11373 1.342082 CGCCACGTAGACGAAACAGG 61.342 60.000 9.41 3.90 43.02 4.00
5208 11374 0.662374 ACGCCACGTAGACGAAACAG 60.662 55.000 9.41 0.00 43.02 3.16
5210 11376 0.661187 TGACGCCACGTAGACGAAAC 60.661 55.000 9.41 0.00 41.37 2.78
5211 11377 0.661187 GTGACGCCACGTAGACGAAA 60.661 55.000 9.41 0.00 41.37 3.46
5213 11379 2.557805 GTGACGCCACGTAGACGA 59.442 61.111 9.41 0.00 41.37 4.20
5237 11403 1.868251 CGTTAGACGGCGTCAGCTC 60.868 63.158 37.71 23.46 44.37 4.09
5238 11404 2.178521 CGTTAGACGGCGTCAGCT 59.821 61.111 37.71 22.24 44.37 4.24
5274 11440 1.193874 GTTTTTACTCACACGGCGGAG 59.806 52.381 13.24 11.08 37.18 4.63
5276 11442 1.070175 CAGTTTTTACTCACACGGCGG 60.070 52.381 13.24 2.35 0.00 6.13
5277 11443 1.070175 CCAGTTTTTACTCACACGGCG 60.070 52.381 4.80 4.80 0.00 6.46
5278 11444 2.215196 TCCAGTTTTTACTCACACGGC 58.785 47.619 0.00 0.00 0.00 5.68
5280 11446 3.985279 TCGATCCAGTTTTTACTCACACG 59.015 43.478 0.00 0.00 0.00 4.49
5283 11449 5.720261 GGATCGATCCAGTTTTTACTCAC 57.280 43.478 34.65 6.21 46.38 3.51
5299 11465 0.548510 TGAGGAGAGAGCTGGATCGA 59.451 55.000 0.00 0.00 0.00 3.59
5300 11466 0.667993 GTGAGGAGAGAGCTGGATCG 59.332 60.000 0.00 0.00 0.00 3.69
5301 11467 1.408702 GTGTGAGGAGAGAGCTGGATC 59.591 57.143 0.00 0.00 0.00 3.36
5303 11469 0.407528 AGTGTGAGGAGAGAGCTGGA 59.592 55.000 0.00 0.00 0.00 3.86
5305 11471 1.745087 GAGAGTGTGAGGAGAGAGCTG 59.255 57.143 0.00 0.00 0.00 4.24
5307 11473 0.732571 CGAGAGTGTGAGGAGAGAGC 59.267 60.000 0.00 0.00 0.00 4.09
5308 11474 0.732571 GCGAGAGTGTGAGGAGAGAG 59.267 60.000 0.00 0.00 0.00 3.20
5309 11475 0.678366 GGCGAGAGTGTGAGGAGAGA 60.678 60.000 0.00 0.00 0.00 3.10
5310 11476 0.679640 AGGCGAGAGTGTGAGGAGAG 60.680 60.000 0.00 0.00 0.00 3.20
5311 11477 0.678366 GAGGCGAGAGTGTGAGGAGA 60.678 60.000 0.00 0.00 0.00 3.71
5312 11478 0.679640 AGAGGCGAGAGTGTGAGGAG 60.680 60.000 0.00 0.00 0.00 3.69
5313 11479 0.962855 CAGAGGCGAGAGTGTGAGGA 60.963 60.000 0.00 0.00 0.00 3.71
5314 11480 1.510383 CAGAGGCGAGAGTGTGAGG 59.490 63.158 0.00 0.00 0.00 3.86
5315 11481 1.153862 GCAGAGGCGAGAGTGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
5316 11482 2.640302 GGCAGAGGCGAGAGTGTGA 61.640 63.158 0.00 0.00 42.47 3.58
5317 11483 2.125753 GGCAGAGGCGAGAGTGTG 60.126 66.667 0.00 0.00 42.47 3.82
5318 11484 2.283532 AGGCAGAGGCGAGAGTGT 60.284 61.111 0.00 0.00 42.47 3.55
5320 11486 3.137459 CGAGGCAGAGGCGAGAGT 61.137 66.667 0.00 0.00 42.47 3.24
5321 11487 4.567385 GCGAGGCAGAGGCGAGAG 62.567 72.222 0.00 0.00 42.47 3.20
5327 11493 3.535962 GAGAGGGCGAGGCAGAGG 61.536 72.222 0.00 0.00 0.00 3.69
5328 11494 3.535962 GGAGAGGGCGAGGCAGAG 61.536 72.222 0.00 0.00 0.00 3.35
5330 11496 3.535962 GAGGAGAGGGCGAGGCAG 61.536 72.222 0.00 0.00 0.00 4.85
5332 11498 3.844090 GTGAGGAGAGGGCGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
5333 11499 2.043450 AGTGAGGAGAGGGCGAGG 60.043 66.667 0.00 0.00 0.00 4.63
5334 11500 1.077068 AGAGTGAGGAGAGGGCGAG 60.077 63.158 0.00 0.00 0.00 5.03
5335 11501 1.379176 CAGAGTGAGGAGAGGGCGA 60.379 63.158 0.00 0.00 0.00 5.54
5336 11502 1.254284 AACAGAGTGAGGAGAGGGCG 61.254 60.000 0.00 0.00 0.00 6.13
5337 11503 0.534873 GAACAGAGTGAGGAGAGGGC 59.465 60.000 0.00 0.00 0.00 5.19
5338 11504 2.230130 AGAACAGAGTGAGGAGAGGG 57.770 55.000 0.00 0.00 0.00 4.30
5342 11508 2.495669 GGGAGAAGAACAGAGTGAGGAG 59.504 54.545 0.00 0.00 0.00 3.69
5343 11509 2.530701 GGGAGAAGAACAGAGTGAGGA 58.469 52.381 0.00 0.00 0.00 3.71
5344 11510 1.552792 GGGGAGAAGAACAGAGTGAGG 59.447 57.143 0.00 0.00 0.00 3.86
5345 11511 1.552792 GGGGGAGAAGAACAGAGTGAG 59.447 57.143 0.00 0.00 0.00 3.51
5346 11512 1.645710 GGGGGAGAAGAACAGAGTGA 58.354 55.000 0.00 0.00 0.00 3.41
5347 11513 0.247736 CGGGGGAGAAGAACAGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
5348 11514 0.905337 CCGGGGGAGAAGAACAGAGT 60.905 60.000 0.00 0.00 0.00 3.24
5349 11515 1.901085 CCGGGGGAGAAGAACAGAG 59.099 63.158 0.00 0.00 0.00 3.35
5351 11517 2.269241 GCCGGGGGAGAAGAACAG 59.731 66.667 2.18 0.00 0.00 3.16
5390 11556 4.021925 ACCGGGGAGCAGCAGAAC 62.022 66.667 6.32 0.00 0.00 3.01
5403 11569 4.697756 ACGACACCATGGCACCGG 62.698 66.667 13.04 0.00 0.00 5.28
5404 11570 3.422303 CACGACACCATGGCACCG 61.422 66.667 13.04 14.75 0.00 4.94
5405 11571 3.055719 CCACGACACCATGGCACC 61.056 66.667 13.04 0.00 0.00 5.01
5406 11572 2.031919 TCCACGACACCATGGCAC 59.968 61.111 13.04 2.28 35.81 5.01
5409 11575 0.670546 GTCACTCCACGACACCATGG 60.671 60.000 11.19 11.19 37.32 3.66
5412 11578 1.792118 CTCGTCACTCCACGACACCA 61.792 60.000 0.00 0.00 43.79 4.17
5413 11579 1.081376 CTCGTCACTCCACGACACC 60.081 63.158 0.00 0.00 43.79 4.16
5414 11580 0.385723 GTCTCGTCACTCCACGACAC 60.386 60.000 0.00 0.00 43.79 3.67
5415 11581 1.512996 GGTCTCGTCACTCCACGACA 61.513 60.000 0.00 0.00 43.79 4.35
5416 11582 1.209640 GGTCTCGTCACTCCACGAC 59.790 63.158 0.00 0.00 43.79 4.34
5417 11583 1.228033 TGGTCTCGTCACTCCACGA 60.228 57.895 0.00 0.00 46.42 4.35
5418 11584 1.210413 CTGGTCTCGTCACTCCACG 59.790 63.158 0.00 0.00 41.36 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.