Multiple sequence alignment - TraesCS1D01G287800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G287800 chr1D 100.000 4027 0 0 1 4027 386167221 386163195 0.000000e+00 7437
1 TraesCS1D01G287800 chr1D 94.411 501 28 0 13 513 66392146 66392646 0.000000e+00 771
2 TraesCS1D01G287800 chr1D 93.812 501 31 0 13 513 62159450 62159950 0.000000e+00 754
3 TraesCS1D01G287800 chr1D 93.812 501 31 0 13 513 366024136 366024636 0.000000e+00 754
4 TraesCS1D01G287800 chr1D 93.613 501 32 0 13 513 328820559 328821059 0.000000e+00 749
5 TraesCS1D01G287800 chr1D 87.356 261 24 8 1176 1430 386165469 386165212 1.420000e-74 291
6 TraesCS1D01G287800 chr1D 87.356 261 24 8 1753 2010 386166046 386165792 1.420000e-74 291
7 TraesCS1D01G287800 chr1B 93.921 1168 51 9 1655 2814 518541020 518539865 0.000000e+00 1746
8 TraesCS1D01G287800 chr1B 91.260 778 62 4 644 1417 518542038 518541263 0.000000e+00 1055
9 TraesCS1D01G287800 chr1B 95.172 435 19 2 2814 3247 518539916 518539483 0.000000e+00 686
10 TraesCS1D01G287800 chr1B 78.884 502 70 22 1725 2196 518541532 518541037 1.410000e-79 307
11 TraesCS1D01G287800 chr1B 84.295 312 41 7 1125 1430 518540978 518540669 8.460000e-77 298
12 TraesCS1D01G287800 chr1B 77.745 337 44 15 3493 3814 518539257 518538937 1.150000e-40 178
13 TraesCS1D01G287800 chr1A 91.831 1163 58 11 1660 2814 486053703 486052570 0.000000e+00 1587
14 TraesCS1D01G287800 chr1A 87.458 1196 115 22 513 1696 486054934 486053762 0.000000e+00 1345
15 TraesCS1D01G287800 chr1A 92.437 595 16 5 2814 3406 486052619 486052052 0.000000e+00 822
16 TraesCS1D01G287800 chr1A 94.012 501 29 1 13 513 425686690 425687189 0.000000e+00 758
17 TraesCS1D01G287800 chr1A 83.179 648 42 27 3424 4027 486051977 486051353 7.660000e-147 531
18 TraesCS1D01G287800 chr1A 84.967 306 36 9 1708 2010 486054318 486054020 6.540000e-78 302
19 TraesCS1D01G287800 chr1A 85.556 270 38 1 1157 1425 486053632 486053363 8.520000e-72 281
20 TraesCS1D01G287800 chrUn 94.366 497 28 0 13 509 45822747 45822251 0.000000e+00 763
21 TraesCS1D01G287800 chrUn 94.165 497 29 0 13 509 314871614 314871118 0.000000e+00 758
22 TraesCS1D01G287800 chr3D 94.165 497 29 0 13 509 596654569 596654073 0.000000e+00 758
23 TraesCS1D01G287800 chr3D 85.602 382 39 11 2379 2753 458628656 458628284 1.760000e-103 387
24 TraesCS1D01G287800 chr3D 93.714 175 10 1 2331 2504 231531849 231531675 1.110000e-65 261
25 TraesCS1D01G287800 chr5D 93.613 501 32 0 13 513 564762725 564763225 0.000000e+00 749
26 TraesCS1D01G287800 chr5D 94.286 175 9 1 2331 2504 339384403 339384577 2.390000e-67 267
27 TraesCS1D01G287800 chr5D 84.516 155 23 1 2872 3026 521673950 521673797 6.970000e-33 152
28 TraesCS1D01G287800 chr4A 89.780 499 41 2 1655 2146 322883979 322884474 7.340000e-177 630
29 TraesCS1D01G287800 chr4A 85.132 417 44 9 1301 1702 322883549 322883962 1.040000e-110 411
30 TraesCS1D01G287800 chr4A 94.397 232 12 1 2274 2504 322884475 322884706 4.950000e-94 355
31 TraesCS1D01G287800 chr4A 82.623 305 48 4 1125 1425 322884021 322884324 8.580000e-67 265
32 TraesCS1D01G287800 chr2B 85.542 415 46 9 1301 1702 306848381 306847968 4.810000e-114 422
33 TraesCS1D01G287800 chr2B 93.103 232 14 2 2274 2504 306847796 306847566 4.990000e-89 339
34 TraesCS1D01G287800 chr3B 86.126 382 35 13 2379 2753 605677379 605677009 2.920000e-106 396
35 TraesCS1D01G287800 chr3B 93.289 149 10 0 2884 3032 605676940 605676792 1.880000e-53 220
36 TraesCS1D01G287800 chr3A 86.047 387 32 12 2379 2753 600931695 600931319 2.920000e-106 396
37 TraesCS1D01G287800 chr3A 91.946 149 12 0 2884 3032 600931243 600931095 4.080000e-50 209
38 TraesCS1D01G287800 chr4D 85.970 335 33 7 1301 1622 332131329 332131662 2.980000e-91 346
39 TraesCS1D01G287800 chr4D 94.286 175 9 1 2331 2504 332131683 332131857 2.390000e-67 267
40 TraesCS1D01G287800 chr6D 85.044 341 37 7 1301 1628 73252786 73252447 6.450000e-88 335
41 TraesCS1D01G287800 chr6D 94.286 175 9 1 2331 2504 73252432 73252258 2.390000e-67 267
42 TraesCS1D01G287800 chr2D 94.286 175 9 1 2331 2504 147703511 147703685 2.390000e-67 267
43 TraesCS1D01G287800 chr5A 86.452 155 20 1 2872 3026 650024015 650023862 6.920000e-38 169
44 TraesCS1D01G287800 chr5B 84.516 155 23 1 2872 3026 658067654 658067501 6.970000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G287800 chr1D 386163195 386167221 4026 True 2673.000000 7437 91.570667 1 4027 3 chr1D.!!$R1 4026
1 TraesCS1D01G287800 chr1D 66392146 66392646 500 False 771.000000 771 94.411000 13 513 1 chr1D.!!$F2 500
2 TraesCS1D01G287800 chr1D 62159450 62159950 500 False 754.000000 754 93.812000 13 513 1 chr1D.!!$F1 500
3 TraesCS1D01G287800 chr1D 366024136 366024636 500 False 754.000000 754 93.812000 13 513 1 chr1D.!!$F4 500
4 TraesCS1D01G287800 chr1D 328820559 328821059 500 False 749.000000 749 93.613000 13 513 1 chr1D.!!$F3 500
5 TraesCS1D01G287800 chr1B 518538937 518542038 3101 True 711.666667 1746 86.879500 644 3814 6 chr1B.!!$R1 3170
6 TraesCS1D01G287800 chr1A 486051353 486054934 3581 True 811.333333 1587 87.571333 513 4027 6 chr1A.!!$R1 3514
7 TraesCS1D01G287800 chr5D 564762725 564763225 500 False 749.000000 749 93.613000 13 513 1 chr5D.!!$F2 500
8 TraesCS1D01G287800 chr4A 322883549 322884706 1157 False 415.250000 630 87.983000 1125 2504 4 chr4A.!!$F1 1379
9 TraesCS1D01G287800 chr2B 306847566 306848381 815 True 380.500000 422 89.322500 1301 2504 2 chr2B.!!$R1 1203
10 TraesCS1D01G287800 chr3B 605676792 605677379 587 True 308.000000 396 89.707500 2379 3032 2 chr3B.!!$R1 653
11 TraesCS1D01G287800 chr3A 600931095 600931695 600 True 302.500000 396 88.996500 2379 3032 2 chr3A.!!$R1 653
12 TraesCS1D01G287800 chr4D 332131329 332131857 528 False 306.500000 346 90.128000 1301 2504 2 chr4D.!!$F1 1203
13 TraesCS1D01G287800 chr6D 73252258 73252786 528 True 301.000000 335 89.665000 1301 2504 2 chr6D.!!$R1 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 900 0.260230 CCCTCCTCACTCCTCTAGCA 59.740 60.0 0.00 0.0 0.0 3.49 F
1268 1273 0.037326 TTGACGGTCCAGTGCTGATC 60.037 55.0 5.55 0.0 0.0 2.92 F
1520 1527 0.394565 ATATCCACCTCCTTGCTCGC 59.605 55.0 0.00 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2795 2942 0.034089 GGAGGTTAGGTTGGCTGCAT 60.034 55.0 0.5 0.0 0.0 3.96 R
2797 2944 0.034089 ATGGAGGTTAGGTTGGCTGC 60.034 55.0 0.0 0.0 0.0 5.25 R
3228 3378 0.041238 ACCCACTAGCCAGCAGAGTA 59.959 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.240103 TCTGCACTGCACCACGCT 62.240 61.111 0.00 0.00 43.06 5.07
39 40 2.433145 CTGCACCACGCTGTCGAT 60.433 61.111 0.00 0.00 43.06 3.59
193 194 3.181461 CCGATCAGCTGATCTAGGGTTTT 60.181 47.826 39.87 15.72 46.58 2.43
285 286 3.822192 CGTCATCACCGGCTCCGA 61.822 66.667 10.28 0.00 42.83 4.55
304 305 0.611062 ACCATCGACCGAAGACCAGA 60.611 55.000 0.00 0.00 0.00 3.86
312 313 3.665190 GACCGAAGACCAGATTTTCACT 58.335 45.455 0.00 0.00 0.00 3.41
367 368 3.300765 ACCGTCTCGACCGCCTTT 61.301 61.111 0.00 0.00 0.00 3.11
371 372 1.421382 CGTCTCGACCGCCTTTAAAA 58.579 50.000 0.00 0.00 0.00 1.52
372 373 1.997606 CGTCTCGACCGCCTTTAAAAT 59.002 47.619 0.00 0.00 0.00 1.82
470 471 1.447217 CTGAGTGTGCCACCACTGA 59.553 57.895 5.61 0.00 45.46 3.41
520 521 1.250840 GCCAAGCCCCGAATCAAACT 61.251 55.000 0.00 0.00 0.00 2.66
612 613 2.236395 TCCTAGCTACAGTTCAAAGCCC 59.764 50.000 0.00 0.00 36.92 5.19
613 614 2.633488 CTAGCTACAGTTCAAAGCCCC 58.367 52.381 0.00 0.00 36.92 5.80
617 618 2.076863 CTACAGTTCAAAGCCCCGAAG 58.923 52.381 0.00 0.00 0.00 3.79
620 621 1.603739 GTTCAAAGCCCCGAAGCCT 60.604 57.895 0.00 0.00 0.00 4.58
621 622 1.603455 TTCAAAGCCCCGAAGCCTG 60.603 57.895 0.00 0.00 0.00 4.85
627 628 4.148825 CCCCGAAGCCTGTCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
628 629 4.148825 CCCGAAGCCTGTCTCCGG 62.149 72.222 0.00 0.00 39.85 5.14
648 649 1.336702 GCGATTTGCATCACCCAACAA 60.337 47.619 0.00 0.00 45.45 2.83
656 657 3.875727 TGCATCACCCAACAAAACAAATG 59.124 39.130 0.00 0.00 0.00 2.32
662 663 3.132925 CCCAACAAAACAAATGGAGCAG 58.867 45.455 0.00 0.00 34.82 4.24
664 665 4.053295 CCAACAAAACAAATGGAGCAGAG 58.947 43.478 0.00 0.00 34.82 3.35
670 671 4.778534 AACAAATGGAGCAGAGTGAATG 57.221 40.909 0.00 0.00 0.00 2.67
700 701 3.188159 TGGACGTGTAAAGCTCTTGTT 57.812 42.857 0.00 0.00 0.00 2.83
703 704 3.746492 GGACGTGTAAAGCTCTTGTTGAT 59.254 43.478 0.00 0.00 0.00 2.57
705 706 5.095691 ACGTGTAAAGCTCTTGTTGATTG 57.904 39.130 0.00 0.00 0.00 2.67
764 765 7.255590 GGGGTCATATGTGGAAAAGATGTATTG 60.256 40.741 1.90 0.00 0.00 1.90
895 900 0.260230 CCCTCCTCACTCCTCTAGCA 59.740 60.000 0.00 0.00 0.00 3.49
956 961 1.499007 GAGATCTCCAGACCTCTCCCT 59.501 57.143 12.00 0.00 28.69 4.20
957 962 1.499007 AGATCTCCAGACCTCTCCCTC 59.501 57.143 0.00 0.00 0.00 4.30
960 965 2.218115 CTCCAGACCTCTCCCTCCGT 62.218 65.000 0.00 0.00 0.00 4.69
1046 1051 1.271054 CCTCCTTCATCCTAATGCGGG 60.271 57.143 0.00 0.00 32.58 6.13
1072 1077 2.815647 CTTTCTCGGCGCTGGTCC 60.816 66.667 17.88 0.00 0.00 4.46
1075 1080 2.463589 TTTCTCGGCGCTGGTCCATT 62.464 55.000 17.88 0.00 0.00 3.16
1079 1084 2.676471 GGCGCTGGTCCATTGGTT 60.676 61.111 7.64 0.00 0.00 3.67
1131 1136 1.953559 GGTTCTTGCTCCGATATGCA 58.046 50.000 0.00 0.00 37.42 3.96
1139 1144 1.626747 CTCCGATATGCAGATGCTCG 58.373 55.000 0.00 7.12 42.66 5.03
1142 1147 1.336240 CCGATATGCAGATGCTCGTGA 60.336 52.381 0.00 0.00 42.66 4.35
1143 1148 2.603953 CGATATGCAGATGCTCGTGAT 58.396 47.619 0.00 0.00 42.66 3.06
1146 1151 4.433936 CGATATGCAGATGCTCGTGATTTC 60.434 45.833 0.00 0.00 42.66 2.17
1147 1152 1.001624 TGCAGATGCTCGTGATTTCG 58.998 50.000 6.35 0.00 42.66 3.46
1149 1154 1.005557 GCAGATGCTCGTGATTTCGTC 60.006 52.381 0.00 0.00 38.21 4.20
1151 1156 2.926200 CAGATGCTCGTGATTTCGTCTT 59.074 45.455 0.00 0.00 0.00 3.01
1152 1157 2.926200 AGATGCTCGTGATTTCGTCTTG 59.074 45.455 0.00 0.00 0.00 3.02
1154 1159 3.291809 TGCTCGTGATTTCGTCTTGTA 57.708 42.857 0.00 0.00 0.00 2.41
1155 1160 3.242518 TGCTCGTGATTTCGTCTTGTAG 58.757 45.455 0.00 0.00 0.00 2.74
1157 1162 4.083164 TGCTCGTGATTTCGTCTTGTAGTA 60.083 41.667 0.00 0.00 0.00 1.82
1158 1163 4.496183 GCTCGTGATTTCGTCTTGTAGTAG 59.504 45.833 0.00 0.00 0.00 2.57
1159 1164 4.409570 TCGTGATTTCGTCTTGTAGTAGC 58.590 43.478 0.00 0.00 0.00 3.58
1160 1165 4.083164 TCGTGATTTCGTCTTGTAGTAGCA 60.083 41.667 0.00 0.00 0.00 3.49
1161 1166 4.619760 CGTGATTTCGTCTTGTAGTAGCAA 59.380 41.667 0.00 0.00 0.00 3.91
1162 1167 5.288712 CGTGATTTCGTCTTGTAGTAGCAAT 59.711 40.000 0.00 0.00 0.00 3.56
1163 1168 6.183360 CGTGATTTCGTCTTGTAGTAGCAATT 60.183 38.462 0.00 0.00 0.00 2.32
1165 1170 4.921470 TTCGTCTTGTAGTAGCAATTGC 57.079 40.909 23.05 23.05 42.49 3.56
1175 1180 3.111038 GCAATTGCGGAGTAGCCC 58.889 61.111 15.87 0.00 36.02 5.19
1176 1181 2.481471 GCAATTGCGGAGTAGCCCC 61.481 63.158 15.87 0.00 36.02 5.80
1177 1182 1.077787 CAATTGCGGAGTAGCCCCA 60.078 57.895 0.00 0.00 36.02 4.96
1178 1183 0.466189 CAATTGCGGAGTAGCCCCAT 60.466 55.000 0.00 0.00 36.02 4.00
1179 1184 0.466189 AATTGCGGAGTAGCCCCATG 60.466 55.000 0.00 0.00 36.02 3.66
1182 1187 2.731571 GCGGAGTAGCCCCATGTGA 61.732 63.158 0.00 0.00 0.00 3.58
1183 1188 2.044806 GCGGAGTAGCCCCATGTGAT 62.045 60.000 0.00 0.00 0.00 3.06
1184 1189 0.469917 CGGAGTAGCCCCATGTGATT 59.530 55.000 0.00 0.00 0.00 2.57
1186 1191 2.104111 CGGAGTAGCCCCATGTGATTTA 59.896 50.000 0.00 0.00 0.00 1.40
1187 1192 3.744660 GGAGTAGCCCCATGTGATTTAG 58.255 50.000 0.00 0.00 0.00 1.85
1188 1193 3.496870 GGAGTAGCCCCATGTGATTTAGG 60.497 52.174 0.00 0.00 0.00 2.69
1189 1194 3.123273 AGTAGCCCCATGTGATTTAGGT 58.877 45.455 0.00 0.00 0.00 3.08
1190 1195 2.736670 AGCCCCATGTGATTTAGGTC 57.263 50.000 0.00 0.00 0.00 3.85
1191 1196 1.134098 AGCCCCATGTGATTTAGGTCG 60.134 52.381 0.00 0.00 0.00 4.79
1192 1197 1.134220 GCCCCATGTGATTTAGGTCGA 60.134 52.381 0.00 0.00 0.00 4.20
1193 1198 2.487265 GCCCCATGTGATTTAGGTCGAT 60.487 50.000 0.00 0.00 0.00 3.59
1194 1199 3.820557 CCCCATGTGATTTAGGTCGATT 58.179 45.455 0.00 0.00 0.00 3.34
1196 1201 4.036734 CCCCATGTGATTTAGGTCGATTTG 59.963 45.833 0.00 0.00 0.00 2.32
1200 1205 6.349280 CCATGTGATTTAGGTCGATTTGTGTT 60.349 38.462 0.00 0.00 0.00 3.32
1201 1206 7.148323 CCATGTGATTTAGGTCGATTTGTGTTA 60.148 37.037 0.00 0.00 0.00 2.41
1202 1207 7.359262 TGTGATTTAGGTCGATTTGTGTTAG 57.641 36.000 0.00 0.00 0.00 2.34
1203 1208 6.370442 TGTGATTTAGGTCGATTTGTGTTAGG 59.630 38.462 0.00 0.00 0.00 2.69
1205 1210 4.895668 TTAGGTCGATTTGTGTTAGGGT 57.104 40.909 0.00 0.00 0.00 4.34
1206 1211 3.782656 AGGTCGATTTGTGTTAGGGTT 57.217 42.857 0.00 0.00 0.00 4.11
1207 1212 4.895668 AGGTCGATTTGTGTTAGGGTTA 57.104 40.909 0.00 0.00 0.00 2.85
1208 1213 4.828829 AGGTCGATTTGTGTTAGGGTTAG 58.171 43.478 0.00 0.00 0.00 2.34
1211 1216 4.868734 GTCGATTTGTGTTAGGGTTAGAGG 59.131 45.833 0.00 0.00 0.00 3.69
1212 1217 4.773674 TCGATTTGTGTTAGGGTTAGAGGA 59.226 41.667 0.00 0.00 0.00 3.71
1213 1218 4.868734 CGATTTGTGTTAGGGTTAGAGGAC 59.131 45.833 0.00 0.00 0.00 3.85
1214 1219 3.947910 TTGTGTTAGGGTTAGAGGACG 57.052 47.619 0.00 0.00 0.00 4.79
1215 1220 2.173519 TGTGTTAGGGTTAGAGGACGG 58.826 52.381 0.00 0.00 0.00 4.79
1217 1222 1.358787 TGTTAGGGTTAGAGGACGGGA 59.641 52.381 0.00 0.00 0.00 5.14
1218 1223 2.023695 TGTTAGGGTTAGAGGACGGGAT 60.024 50.000 0.00 0.00 0.00 3.85
1219 1224 2.627221 GTTAGGGTTAGAGGACGGGATC 59.373 54.545 0.00 0.00 0.00 3.36
1220 1225 0.467659 AGGGTTAGAGGACGGGATCG 60.468 60.000 0.00 0.00 43.02 3.69
1231 1236 1.657487 CGGGATCGTCGTTCCGATG 60.657 63.158 14.62 5.22 46.85 3.84
1232 1237 3.614143 GGATCGTCGTTCCGATGC 58.386 61.111 6.59 10.23 46.85 3.91
1234 1239 1.298116 GATCGTCGTTCCGATGCGA 60.298 57.895 11.00 1.92 46.85 5.10
1235 1240 1.529883 GATCGTCGTTCCGATGCGAC 61.530 60.000 11.00 13.03 46.85 5.19
1237 1242 2.202388 GTCGTTCCGATGCGACGA 60.202 61.111 0.00 0.00 45.86 4.20
1238 1243 1.798725 GTCGTTCCGATGCGACGAA 60.799 57.895 0.00 0.00 45.90 3.85
1240 1245 1.056750 CGTTCCGATGCGACGAAAC 59.943 57.895 0.00 0.00 38.99 2.78
1241 1246 1.342082 CGTTCCGATGCGACGAAACT 61.342 55.000 0.00 0.00 38.99 2.66
1242 1247 0.093026 GTTCCGATGCGACGAAACTG 59.907 55.000 0.00 0.00 35.09 3.16
1243 1248 0.038983 TTCCGATGCGACGAAACTGA 60.039 50.000 0.00 0.00 35.09 3.41
1244 1249 0.456142 TCCGATGCGACGAAACTGAG 60.456 55.000 0.00 0.00 35.09 3.35
1246 1251 1.073216 CGATGCGACGAAACTGAGCT 61.073 55.000 0.00 0.00 35.09 4.09
1247 1252 1.071605 GATGCGACGAAACTGAGCTT 58.928 50.000 0.00 0.00 0.00 3.74
1248 1253 2.259618 GATGCGACGAAACTGAGCTTA 58.740 47.619 0.00 0.00 0.00 3.09
1250 1255 2.683968 TGCGACGAAACTGAGCTTATT 58.316 42.857 0.00 0.00 0.00 1.40
1251 1256 2.411748 TGCGACGAAACTGAGCTTATTG 59.588 45.455 0.00 0.00 0.00 1.90
1252 1257 2.666508 GCGACGAAACTGAGCTTATTGA 59.333 45.455 0.00 0.00 0.00 2.57
1253 1258 3.482112 GCGACGAAACTGAGCTTATTGAC 60.482 47.826 0.00 0.00 0.00 3.18
1254 1259 3.241364 CGACGAAACTGAGCTTATTGACG 60.241 47.826 0.00 0.00 0.00 4.35
1255 1260 2.993899 ACGAAACTGAGCTTATTGACGG 59.006 45.455 0.00 0.00 0.00 4.79
1256 1261 2.993899 CGAAACTGAGCTTATTGACGGT 59.006 45.455 0.00 0.00 0.00 4.83
1257 1262 3.060895 CGAAACTGAGCTTATTGACGGTC 59.939 47.826 0.00 0.00 0.00 4.79
1258 1263 2.674796 ACTGAGCTTATTGACGGTCC 57.325 50.000 5.55 0.00 0.00 4.46
1259 1264 1.899814 ACTGAGCTTATTGACGGTCCA 59.100 47.619 5.55 0.00 0.00 4.02
1260 1265 2.093973 ACTGAGCTTATTGACGGTCCAG 60.094 50.000 5.55 5.57 0.00 3.86
1261 1266 1.899814 TGAGCTTATTGACGGTCCAGT 59.100 47.619 5.55 0.00 0.00 4.00
1263 1268 0.727398 GCTTATTGACGGTCCAGTGC 59.273 55.000 5.55 0.53 0.00 4.40
1264 1269 1.676014 GCTTATTGACGGTCCAGTGCT 60.676 52.381 5.55 0.00 0.00 4.40
1265 1270 2.002586 CTTATTGACGGTCCAGTGCTG 58.997 52.381 5.55 0.00 0.00 4.41
1266 1271 1.262417 TATTGACGGTCCAGTGCTGA 58.738 50.000 5.55 0.00 0.00 4.26
1267 1272 0.615331 ATTGACGGTCCAGTGCTGAT 59.385 50.000 5.55 0.00 0.00 2.90
1268 1273 0.037326 TTGACGGTCCAGTGCTGATC 60.037 55.000 5.55 0.00 0.00 2.92
1269 1274 1.184970 TGACGGTCCAGTGCTGATCA 61.185 55.000 5.55 0.00 0.00 2.92
1270 1275 0.459237 GACGGTCCAGTGCTGATCAG 60.459 60.000 18.84 18.84 0.00 2.90
1272 1277 0.463204 CGGTCCAGTGCTGATCAGAT 59.537 55.000 27.04 8.27 0.00 2.90
1274 1279 2.544694 CGGTCCAGTGCTGATCAGATAC 60.545 54.545 27.04 21.66 0.00 2.24
1276 1281 3.118629 GGTCCAGTGCTGATCAGATACAA 60.119 47.826 27.04 10.52 0.00 2.41
1277 1282 3.868077 GTCCAGTGCTGATCAGATACAAC 59.132 47.826 27.04 16.92 0.00 3.32
1278 1283 2.862536 CCAGTGCTGATCAGATACAACG 59.137 50.000 27.04 14.57 0.00 4.10
1279 1284 3.515630 CAGTGCTGATCAGATACAACGT 58.484 45.455 27.04 5.69 0.00 3.99
1430 1437 1.317613 CTGGTGCAGTTTGCCTGTTA 58.682 50.000 0.00 0.00 44.23 2.41
1438 1445 4.023279 TGCAGTTTGCCTGTTATTAGTGTG 60.023 41.667 0.00 0.00 44.23 3.82
1445 1452 3.370103 GCCTGTTATTAGTGTGGGTAGCA 60.370 47.826 0.00 0.00 0.00 3.49
1469 1476 6.347859 AGATGATATCTACCTCGGTTTTCC 57.652 41.667 3.98 0.00 38.00 3.13
1477 1484 1.073923 ACCTCGGTTTTCCTGATGCTT 59.926 47.619 0.00 0.00 37.95 3.91
1479 1486 2.162408 CCTCGGTTTTCCTGATGCTTTC 59.838 50.000 0.00 0.00 37.95 2.62
1484 1491 5.046878 TCGGTTTTCCTGATGCTTTCTAGTA 60.047 40.000 0.00 0.00 37.95 1.82
1498 1505 5.278022 GCTTTCTAGTATGGCCATGTTTAGC 60.278 44.000 29.04 20.59 0.00 3.09
1520 1527 0.394565 ATATCCACCTCCTTGCTCGC 59.605 55.000 0.00 0.00 0.00 5.03
1531 1554 4.391216 CCTCCTTGCTCGCTATGATTAATG 59.609 45.833 0.00 0.00 0.00 1.90
1535 1558 5.333645 CCTTGCTCGCTATGATTAATGTGTC 60.334 44.000 0.00 0.00 0.00 3.67
1577 1600 3.071874 TCGAGGTGAAATGCTTGGAAT 57.928 42.857 0.00 0.00 0.00 3.01
1622 1645 4.155462 GCATCACATCAGTTCAGTGACATT 59.845 41.667 0.00 0.00 44.15 2.71
1623 1646 5.335426 GCATCACATCAGTTCAGTGACATTT 60.335 40.000 0.00 0.00 44.15 2.32
1635 1658 9.736023 AGTTCAGTGACATTTTCTTTATTTCAC 57.264 29.630 0.00 0.00 34.47 3.18
1636 1659 9.515020 GTTCAGTGACATTTTCTTTATTTCACA 57.485 29.630 0.00 0.00 35.93 3.58
1682 1812 7.809331 CACATCTGTAGTTTGTTGCAACATATT 59.191 33.333 31.48 24.42 38.95 1.28
1683 1813 7.809331 ACATCTGTAGTTTGTTGCAACATATTG 59.191 33.333 31.48 19.04 38.95 1.90
1702 1832 8.347771 ACATATTGACATGTTCAGTTGATATGC 58.652 33.333 0.00 0.00 35.60 3.14
1703 1833 6.762702 ATTGACATGTTCAGTTGATATGCA 57.237 33.333 0.00 0.00 34.94 3.96
1733 1863 3.674997 TCTTGTGCTATGTTCTTGGACC 58.325 45.455 0.00 0.00 0.00 4.46
1746 1876 0.469705 TTGGACCAGCAAGTGCCAAT 60.470 50.000 0.00 0.00 43.38 3.16
1756 1886 4.398988 CAGCAAGTGCCAATTAGAACCATA 59.601 41.667 0.00 0.00 43.38 2.74
1792 1922 1.229625 TGCTGGGGTCAGAGGATGT 60.230 57.895 0.00 0.00 43.49 3.06
1909 2039 3.897141 TCGTTGCCACCATGTTATCTA 57.103 42.857 0.00 0.00 0.00 1.98
1923 2053 7.885399 ACCATGTTATCTATATTCCTTTGCTCC 59.115 37.037 0.00 0.00 0.00 4.70
1952 2082 0.895100 GCCCTGGAAGTTGTGCATGA 60.895 55.000 0.00 0.00 0.00 3.07
1958 2088 3.011818 TGGAAGTTGTGCATGATAGCAG 58.988 45.455 0.00 0.00 46.69 4.24
1966 2096 5.027293 TGTGCATGATAGCAGACAATACT 57.973 39.130 0.00 0.00 46.69 2.12
2094 2224 4.319549 CCAGTTTAGAACGCAAGGAGAAAC 60.320 45.833 0.00 0.00 46.39 2.78
2148 2285 5.739752 TCAGTTCAGTGACATGTTCTTTG 57.260 39.130 0.00 0.00 0.00 2.77
2191 2328 4.265893 TGTGTTCACATGTGTAGTTGGTT 58.734 39.130 24.63 0.00 0.00 3.67
2192 2329 4.095632 TGTGTTCACATGTGTAGTTGGTTG 59.904 41.667 24.63 0.00 0.00 3.77
2193 2330 3.066064 TGTTCACATGTGTAGTTGGTTGC 59.934 43.478 24.63 2.49 0.00 4.17
2194 2331 2.924421 TCACATGTGTAGTTGGTTGCA 58.076 42.857 24.63 0.00 0.00 4.08
2195 2332 3.282885 TCACATGTGTAGTTGGTTGCAA 58.717 40.909 24.63 0.00 0.00 4.08
2196 2333 3.314913 TCACATGTGTAGTTGGTTGCAAG 59.685 43.478 24.63 0.00 0.00 4.01
2197 2334 3.066621 CACATGTGTAGTTGGTTGCAAGT 59.933 43.478 18.03 0.00 0.00 3.16
2542 2680 3.827008 TGTCCTGGAGAAGATGTATGC 57.173 47.619 0.00 0.00 0.00 3.14
2586 2733 7.791029 ACCCTTGTTTTTATCTCATGTTTTGT 58.209 30.769 0.00 0.00 0.00 2.83
2597 2744 9.817809 TTATCTCATGTTTTGTATCCTGACTAC 57.182 33.333 0.00 0.00 0.00 2.73
2614 2761 2.830186 TACCGTGCAATTGCTCCCCC 62.830 60.000 29.37 12.04 42.66 5.40
2767 2914 1.006813 TATGTGCCCCTCACCCATTT 58.993 50.000 0.00 0.00 45.03 2.32
2777 2924 4.846367 CCCCTCACCCATTTCTCAGATATA 59.154 45.833 0.00 0.00 0.00 0.86
2779 2926 6.413052 CCCTCACCCATTTCTCAGATATATG 58.587 44.000 0.00 0.00 0.00 1.78
2780 2927 5.879223 CCTCACCCATTTCTCAGATATATGC 59.121 44.000 0.00 0.00 0.00 3.14
2782 2929 5.245977 TCACCCATTTCTCAGATATATGCGA 59.754 40.000 0.00 0.00 0.00 5.10
2784 2931 7.124147 TCACCCATTTCTCAGATATATGCGATA 59.876 37.037 0.00 0.00 0.00 2.92
2786 2933 7.930325 ACCCATTTCTCAGATATATGCGATATG 59.070 37.037 11.51 11.51 0.00 1.78
2787 2934 7.930325 CCCATTTCTCAGATATATGCGATATGT 59.070 37.037 15.12 0.00 27.80 2.29
2788 2935 8.976471 CCATTTCTCAGATATATGCGATATGTC 58.024 37.037 15.12 0.00 34.65 3.06
2798 2945 8.923609 ATATATGCGATATGTCTGCTATATGC 57.076 34.615 7.52 0.00 43.25 3.14
2811 2958 2.814336 GCTATATGCAGCCAACCTAACC 59.186 50.000 0.00 0.00 42.31 2.85
2812 2959 3.496870 GCTATATGCAGCCAACCTAACCT 60.497 47.826 0.00 0.00 42.31 3.50
2813 2960 2.710096 TATGCAGCCAACCTAACCTC 57.290 50.000 0.00 0.00 0.00 3.85
2814 2961 0.034089 ATGCAGCCAACCTAACCTCC 60.034 55.000 0.00 0.00 0.00 4.30
2815 2962 1.378762 GCAGCCAACCTAACCTCCA 59.621 57.895 0.00 0.00 0.00 3.86
2822 2969 2.009774 CAACCTAACCTCCATTGCTCG 58.990 52.381 0.00 0.00 0.00 5.03
2823 2970 0.107654 ACCTAACCTCCATTGCTCGC 60.108 55.000 0.00 0.00 0.00 5.03
2824 2971 0.107703 CCTAACCTCCATTGCTCGCA 60.108 55.000 0.00 0.00 0.00 5.10
2826 2973 2.224281 CCTAACCTCCATTGCTCGCATA 60.224 50.000 0.00 0.00 0.00 3.14
3027 3177 0.833949 GGAGAAGCCCAGGTCTTAGG 59.166 60.000 0.00 0.00 0.00 2.69
3225 3375 9.392259 CATGATCTGGATATATATTGTTGCTGT 57.608 33.333 0.00 0.00 0.00 4.40
3226 3376 8.782339 TGATCTGGATATATATTGTTGCTGTG 57.218 34.615 0.00 0.00 0.00 3.66
3227 3377 8.377799 TGATCTGGATATATATTGTTGCTGTGT 58.622 33.333 0.00 0.00 0.00 3.72
3228 3378 9.224267 GATCTGGATATATATTGTTGCTGTGTT 57.776 33.333 0.00 0.00 0.00 3.32
3230 3380 9.489084 TCTGGATATATATTGTTGCTGTGTTAC 57.511 33.333 0.00 0.00 0.00 2.50
3231 3381 9.494271 CTGGATATATATTGTTGCTGTGTTACT 57.506 33.333 0.00 0.00 0.00 2.24
3232 3382 9.489084 TGGATATATATTGTTGCTGTGTTACTC 57.511 33.333 0.00 0.00 0.00 2.59
3233 3383 9.712305 GGATATATATTGTTGCTGTGTTACTCT 57.288 33.333 0.00 0.00 0.00 3.24
3235 3385 3.904136 ATTGTTGCTGTGTTACTCTGC 57.096 42.857 8.88 8.88 0.00 4.26
3236 3386 2.620251 TGTTGCTGTGTTACTCTGCT 57.380 45.000 15.07 0.00 0.00 4.24
3237 3387 2.212652 TGTTGCTGTGTTACTCTGCTG 58.787 47.619 15.07 0.00 0.00 4.41
3238 3388 1.532868 GTTGCTGTGTTACTCTGCTGG 59.467 52.381 15.07 0.00 0.00 4.85
3239 3389 0.603707 TGCTGTGTTACTCTGCTGGC 60.604 55.000 15.07 0.00 0.00 4.85
3240 3390 0.321122 GCTGTGTTACTCTGCTGGCT 60.321 55.000 8.62 0.00 0.00 4.75
3241 3391 1.066858 GCTGTGTTACTCTGCTGGCTA 60.067 52.381 8.62 0.00 0.00 3.93
3242 3392 2.886081 CTGTGTTACTCTGCTGGCTAG 58.114 52.381 0.00 0.00 0.00 3.42
3243 3393 2.232452 CTGTGTTACTCTGCTGGCTAGT 59.768 50.000 0.00 6.45 0.00 2.57
3244 3394 2.029020 TGTGTTACTCTGCTGGCTAGTG 60.029 50.000 0.00 0.00 0.00 2.74
3245 3395 1.550524 TGTTACTCTGCTGGCTAGTGG 59.449 52.381 0.00 0.00 0.00 4.00
3246 3396 1.134670 GTTACTCTGCTGGCTAGTGGG 60.135 57.143 0.00 0.00 0.00 4.61
3247 3397 0.041238 TACTCTGCTGGCTAGTGGGT 59.959 55.000 0.00 1.00 0.00 4.51
3281 3431 6.172630 TGTGCTATGATTGTCTGTGTTATGT 58.827 36.000 0.00 0.00 0.00 2.29
3335 3486 6.037500 TGCATGATGAGATAGTTTTGCAGTAC 59.962 38.462 0.00 0.00 34.24 2.73
3374 3525 2.462723 TCCATACCAATCGACCTGTGA 58.537 47.619 0.00 0.00 0.00 3.58
3436 3645 4.081752 TGTCCTGAGCAAAAAGAAGCAAAA 60.082 37.500 0.00 0.00 0.00 2.44
3504 3717 4.992381 ACGATGAAGAGCTACACAAAAC 57.008 40.909 0.00 0.00 0.00 2.43
3510 3723 6.060028 TGAAGAGCTACACAAAACATGTTC 57.940 37.500 12.39 0.00 41.46 3.18
3534 3747 7.083858 TCACCATTTTCAGAATCACGATTTTC 58.916 34.615 0.00 0.00 0.00 2.29
3538 3751 8.668353 CCATTTTCAGAATCACGATTTTCTCTA 58.332 33.333 0.00 0.00 29.85 2.43
3546 3759 8.740906 AGAATCACGATTTTCTCTAACTAGTGA 58.259 33.333 0.00 0.00 36.20 3.41
3566 3779 6.058183 AGTGAAGCTCTCGCCATTAATTTAT 58.942 36.000 0.00 0.00 34.90 1.40
3567 3780 7.217200 AGTGAAGCTCTCGCCATTAATTTATA 58.783 34.615 0.00 0.00 34.90 0.98
3568 3781 7.386299 AGTGAAGCTCTCGCCATTAATTTATAG 59.614 37.037 0.00 0.00 34.90 1.31
3569 3782 7.171678 GTGAAGCTCTCGCCATTAATTTATAGT 59.828 37.037 0.00 0.00 36.60 2.12
3617 3843 3.185594 TGAACGCGTGTGATCTTTTTAGG 59.814 43.478 14.98 0.00 0.00 2.69
3649 3875 4.086706 ACTTGGGAGCTATAATTTCCGG 57.913 45.455 0.00 0.00 31.59 5.14
3650 3876 3.181443 ACTTGGGAGCTATAATTTCCGGG 60.181 47.826 0.00 0.00 31.59 5.73
3651 3877 1.702957 TGGGAGCTATAATTTCCGGGG 59.297 52.381 0.00 0.00 31.59 5.73
3652 3878 1.703513 GGGAGCTATAATTTCCGGGGT 59.296 52.381 0.00 0.00 31.59 4.95
3653 3879 2.107726 GGGAGCTATAATTTCCGGGGTT 59.892 50.000 0.00 0.00 31.59 4.11
3654 3880 3.436035 GGGAGCTATAATTTCCGGGGTTT 60.436 47.826 0.00 0.00 31.59 3.27
3655 3881 4.212716 GGAGCTATAATTTCCGGGGTTTT 58.787 43.478 0.00 0.00 0.00 2.43
3746 3972 3.770666 TGAAGTTGTACTAGCGAGATGC 58.229 45.455 0.00 0.00 46.98 3.91
3756 3982 2.832931 GCGAGATGCTGTTGACTGT 58.167 52.632 0.00 0.00 41.73 3.55
3825 4065 0.964358 GCCCTCTGCAATGCTTCTGT 60.964 55.000 6.82 0.00 40.77 3.41
3900 4142 7.010552 GCTGATTGTAGTAGTAATTCACACTGG 59.989 40.741 0.00 0.00 0.00 4.00
3903 4145 9.088512 GATTGTAGTAGTAATTCACACTGGAAG 57.911 37.037 0.00 0.00 42.29 3.46
3908 4150 8.418597 AGTAGTAATTCACACTGGAAGAGTTA 57.581 34.615 0.00 0.00 34.82 2.24
3966 4212 2.027192 TCTGCACAACCCAAGAGGATAC 60.027 50.000 0.00 0.00 39.89 2.24
3969 4215 2.420129 GCACAACCCAAGAGGATACGAT 60.420 50.000 0.00 0.00 46.39 3.73
4003 4254 3.198409 TGATTGCTCATTGGCGTCTAT 57.802 42.857 0.00 0.00 34.52 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.444805 AGACTCGCGCAGGAGGAC 61.445 66.667 15.41 9.51 38.39 3.85
2 3 3.443925 CAGACTCGCGCAGGAGGA 61.444 66.667 15.41 0.00 38.39 3.71
4 5 4.426112 TGCAGACTCGCGCAGGAG 62.426 66.667 8.75 9.70 39.97 3.69
5 6 4.724602 GTGCAGACTCGCGCAGGA 62.725 66.667 8.75 0.00 42.07 3.86
6 7 4.731612 AGTGCAGACTCGCGCAGG 62.732 66.667 8.75 0.80 44.95 4.85
7 8 3.476646 CAGTGCAGACTCGCGCAG 61.477 66.667 8.75 6.77 44.95 5.18
10 11 3.771491 GTGCAGTGCAGACTCGCG 61.771 66.667 20.42 0.00 40.08 5.87
11 12 3.418068 GGTGCAGTGCAGACTCGC 61.418 66.667 20.42 5.21 40.08 5.03
15 16 4.017877 GCGTGGTGCAGTGCAGAC 62.018 66.667 20.42 16.89 45.45 3.51
39 40 1.138069 ACACATTGATGGCGACGGATA 59.862 47.619 0.00 0.00 0.00 2.59
114 115 2.753966 CGGCATTCTTGGAGGTGCG 61.754 63.158 0.00 0.00 38.43 5.34
193 194 0.689745 CCACTCAATACCTCCGGGGA 60.690 60.000 0.37 0.00 38.76 4.81
285 286 0.611062 TCTGGTCTTCGGTCGATGGT 60.611 55.000 6.45 0.00 0.00 3.55
304 305 2.311124 GGACGGATCCGAGTGAAAAT 57.689 50.000 39.55 15.57 42.83 1.82
367 368 1.476833 GCGGCTGGATCTGGGATTTTA 60.477 52.381 0.00 0.00 0.00 1.52
371 372 2.679619 TAGGCGGCTGGATCTGGGAT 62.680 60.000 23.55 0.00 0.00 3.85
372 373 3.389139 TAGGCGGCTGGATCTGGGA 62.389 63.158 23.55 0.00 0.00 4.37
411 412 0.892755 CTCCTACGGTGGCACTGTTA 59.107 55.000 34.66 19.95 38.84 2.41
509 510 4.245660 TGAGTTAGCTCAGTTTGATTCGG 58.754 43.478 5.01 0.00 45.94 4.30
560 561 1.135632 AGTTGAGTCGAGCTAGTTCGC 60.136 52.381 22.52 17.12 40.29 4.70
563 564 4.585955 TTCAAGTTGAGTCGAGCTAGTT 57.414 40.909 5.56 0.00 0.00 2.24
620 621 1.078497 ATGCAAATCGCCGGAGACA 60.078 52.632 11.10 4.10 41.33 3.41
621 622 1.089481 TGATGCAAATCGCCGGAGAC 61.089 55.000 11.10 0.00 41.33 3.36
628 629 0.243365 TGTTGGGTGATGCAAATCGC 59.757 50.000 0.00 0.00 42.89 4.58
644 645 4.402155 TCACTCTGCTCCATTTGTTTTGTT 59.598 37.500 0.00 0.00 0.00 2.83
648 649 4.560108 GCATTCACTCTGCTCCATTTGTTT 60.560 41.667 0.00 0.00 36.68 2.83
656 657 0.390340 TCGTGCATTCACTCTGCTCC 60.390 55.000 0.00 0.00 40.99 4.70
662 663 2.483877 TCCATGTTTCGTGCATTCACTC 59.516 45.455 0.00 0.00 40.99 3.51
664 665 2.584791 GTCCATGTTTCGTGCATTCAC 58.415 47.619 0.00 0.00 39.78 3.18
670 671 4.818417 CACGTCCATGTTTCGTGC 57.182 55.556 16.87 0.00 45.66 5.34
677 678 3.067106 CAAGAGCTTTACACGTCCATGT 58.933 45.455 0.00 0.00 36.56 3.21
764 765 4.410400 CTGCTTCCACCCCCGGAC 62.410 72.222 0.73 0.00 33.75 4.79
926 931 2.107953 GAGATCTCCGGTGGCAGC 59.892 66.667 12.00 6.62 0.00 5.25
945 950 2.272797 CGACGGAGGGAGAGGTCT 59.727 66.667 0.00 0.00 0.00 3.85
1046 1051 1.355066 CGCCGAGAAAGAGCAAGGTC 61.355 60.000 0.00 0.00 0.00 3.85
1072 1077 2.022195 CATCTCTGCCCAGAACCAATG 58.978 52.381 0.00 0.00 36.94 2.82
1075 1080 1.067295 AACATCTCTGCCCAGAACCA 58.933 50.000 0.00 0.00 36.94 3.67
1079 1084 2.544721 AGAGAAACATCTCTGCCCAGA 58.455 47.619 7.53 0.00 44.63 3.86
1098 1103 0.684805 AGAACCGGGGAGAGCTACAG 60.685 60.000 6.32 0.00 0.00 2.74
1099 1104 0.252103 AAGAACCGGGGAGAGCTACA 60.252 55.000 6.32 0.00 0.00 2.74
1130 1135 2.534298 AGACGAAATCACGAGCATCTG 58.466 47.619 0.00 0.00 37.03 2.90
1131 1136 2.926200 CAAGACGAAATCACGAGCATCT 59.074 45.455 0.00 0.00 37.03 2.90
1139 1144 6.648725 ATTGCTACTACAAGACGAAATCAC 57.351 37.500 0.00 0.00 31.96 3.06
1142 1147 5.445939 CGCAATTGCTACTACAAGACGAAAT 60.446 40.000 26.86 0.00 39.32 2.17
1143 1148 4.143200 CGCAATTGCTACTACAAGACGAAA 60.143 41.667 26.86 0.00 39.32 3.46
1146 1151 2.029244 CCGCAATTGCTACTACAAGACG 59.971 50.000 26.86 7.61 39.32 4.18
1147 1152 3.259064 TCCGCAATTGCTACTACAAGAC 58.741 45.455 26.86 0.00 39.32 3.01
1149 1154 3.262420 ACTCCGCAATTGCTACTACAAG 58.738 45.455 26.86 14.84 39.32 3.16
1151 1156 3.737047 GCTACTCCGCAATTGCTACTACA 60.737 47.826 26.86 7.89 39.32 2.74
1152 1157 2.795470 GCTACTCCGCAATTGCTACTAC 59.205 50.000 26.86 7.76 39.32 2.73
1154 1159 1.473434 GGCTACTCCGCAATTGCTACT 60.473 52.381 26.86 9.91 39.32 2.57
1155 1160 0.938008 GGCTACTCCGCAATTGCTAC 59.062 55.000 26.86 8.81 39.32 3.58
1157 1162 1.452108 GGGCTACTCCGCAATTGCT 60.452 57.895 26.86 11.71 39.32 3.91
1158 1163 2.481471 GGGGCTACTCCGCAATTGC 61.481 63.158 20.76 20.76 46.30 3.56
1159 1164 3.827634 GGGGCTACTCCGCAATTG 58.172 61.111 0.00 0.00 46.30 2.32
1165 1170 0.469917 AATCACATGGGGCTACTCCG 59.530 55.000 0.00 0.00 34.94 4.63
1167 1172 3.136626 ACCTAAATCACATGGGGCTACTC 59.863 47.826 0.00 0.00 0.00 2.59
1168 1173 3.123273 ACCTAAATCACATGGGGCTACT 58.877 45.455 0.00 0.00 0.00 2.57
1170 1175 2.104111 CGACCTAAATCACATGGGGCTA 59.896 50.000 0.00 0.00 0.00 3.93
1171 1176 1.134098 CGACCTAAATCACATGGGGCT 60.134 52.381 0.00 0.00 0.00 5.19
1172 1177 1.134220 TCGACCTAAATCACATGGGGC 60.134 52.381 0.00 0.00 0.00 5.80
1173 1178 3.492102 ATCGACCTAAATCACATGGGG 57.508 47.619 0.00 0.00 0.00 4.96
1174 1179 4.640201 ACAAATCGACCTAAATCACATGGG 59.360 41.667 0.00 0.00 0.00 4.00
1175 1180 5.123820 ACACAAATCGACCTAAATCACATGG 59.876 40.000 0.00 0.00 0.00 3.66
1176 1181 6.182039 ACACAAATCGACCTAAATCACATG 57.818 37.500 0.00 0.00 0.00 3.21
1177 1182 6.817765 AACACAAATCGACCTAAATCACAT 57.182 33.333 0.00 0.00 0.00 3.21
1178 1183 6.370442 CCTAACACAAATCGACCTAAATCACA 59.630 38.462 0.00 0.00 0.00 3.58
1179 1184 6.183360 CCCTAACACAAATCGACCTAAATCAC 60.183 42.308 0.00 0.00 0.00 3.06
1182 1187 5.812286 ACCCTAACACAAATCGACCTAAAT 58.188 37.500 0.00 0.00 0.00 1.40
1183 1188 5.231702 ACCCTAACACAAATCGACCTAAA 57.768 39.130 0.00 0.00 0.00 1.85
1184 1189 4.895668 ACCCTAACACAAATCGACCTAA 57.104 40.909 0.00 0.00 0.00 2.69
1186 1191 3.782656 AACCCTAACACAAATCGACCT 57.217 42.857 0.00 0.00 0.00 3.85
1187 1192 4.824289 TCTAACCCTAACACAAATCGACC 58.176 43.478 0.00 0.00 0.00 4.79
1188 1193 4.868734 CCTCTAACCCTAACACAAATCGAC 59.131 45.833 0.00 0.00 0.00 4.20
1189 1194 4.773674 TCCTCTAACCCTAACACAAATCGA 59.226 41.667 0.00 0.00 0.00 3.59
1190 1195 4.868734 GTCCTCTAACCCTAACACAAATCG 59.131 45.833 0.00 0.00 0.00 3.34
1191 1196 4.868734 CGTCCTCTAACCCTAACACAAATC 59.131 45.833 0.00 0.00 0.00 2.17
1192 1197 4.323257 CCGTCCTCTAACCCTAACACAAAT 60.323 45.833 0.00 0.00 0.00 2.32
1193 1198 3.007182 CCGTCCTCTAACCCTAACACAAA 59.993 47.826 0.00 0.00 0.00 2.83
1194 1199 2.564062 CCGTCCTCTAACCCTAACACAA 59.436 50.000 0.00 0.00 0.00 3.33
1196 1201 1.479730 CCCGTCCTCTAACCCTAACAC 59.520 57.143 0.00 0.00 0.00 3.32
1200 1205 1.202855 CGATCCCGTCCTCTAACCCTA 60.203 57.143 0.00 0.00 0.00 3.53
1201 1206 0.467659 CGATCCCGTCCTCTAACCCT 60.468 60.000 0.00 0.00 0.00 4.34
1202 1207 2.039509 CGATCCCGTCCTCTAACCC 58.960 63.158 0.00 0.00 0.00 4.11
1223 1228 0.093026 CAGTTTCGTCGCATCGGAAC 59.907 55.000 12.02 12.02 46.04 3.62
1224 1229 0.038983 TCAGTTTCGTCGCATCGGAA 60.039 50.000 0.00 0.00 0.00 4.30
1225 1230 0.456142 CTCAGTTTCGTCGCATCGGA 60.456 55.000 0.00 0.00 0.00 4.55
1226 1231 1.991430 CTCAGTTTCGTCGCATCGG 59.009 57.895 0.00 0.00 0.00 4.18
1227 1232 1.073216 AGCTCAGTTTCGTCGCATCG 61.073 55.000 0.00 0.00 0.00 3.84
1228 1233 1.071605 AAGCTCAGTTTCGTCGCATC 58.928 50.000 0.00 0.00 0.00 3.91
1229 1234 2.363788 TAAGCTCAGTTTCGTCGCAT 57.636 45.000 0.00 0.00 0.00 4.73
1230 1235 2.363788 ATAAGCTCAGTTTCGTCGCA 57.636 45.000 0.00 0.00 0.00 5.10
1231 1236 2.666508 TCAATAAGCTCAGTTTCGTCGC 59.333 45.455 0.00 0.00 0.00 5.19
1232 1237 3.241364 CGTCAATAAGCTCAGTTTCGTCG 60.241 47.826 0.00 0.00 0.00 5.12
1234 1239 2.993899 CCGTCAATAAGCTCAGTTTCGT 59.006 45.455 0.00 0.00 0.00 3.85
1235 1240 2.993899 ACCGTCAATAAGCTCAGTTTCG 59.006 45.455 0.00 0.00 0.00 3.46
1236 1241 3.371285 GGACCGTCAATAAGCTCAGTTTC 59.629 47.826 0.00 0.00 0.00 2.78
1237 1242 3.244422 TGGACCGTCAATAAGCTCAGTTT 60.244 43.478 0.00 0.00 0.00 2.66
1238 1243 2.301870 TGGACCGTCAATAAGCTCAGTT 59.698 45.455 0.00 0.00 0.00 3.16
1240 1245 2.093973 ACTGGACCGTCAATAAGCTCAG 60.094 50.000 0.00 0.00 0.00 3.35
1241 1246 1.899814 ACTGGACCGTCAATAAGCTCA 59.100 47.619 0.00 0.00 0.00 4.26
1242 1247 2.271800 CACTGGACCGTCAATAAGCTC 58.728 52.381 0.00 0.00 0.00 4.09
1243 1248 1.676014 GCACTGGACCGTCAATAAGCT 60.676 52.381 0.00 0.00 0.00 3.74
1244 1249 0.727398 GCACTGGACCGTCAATAAGC 59.273 55.000 0.00 0.00 0.00 3.09
1246 1251 1.621317 TCAGCACTGGACCGTCAATAA 59.379 47.619 0.00 0.00 0.00 1.40
1247 1252 1.262417 TCAGCACTGGACCGTCAATA 58.738 50.000 0.00 0.00 0.00 1.90
1248 1253 0.615331 ATCAGCACTGGACCGTCAAT 59.385 50.000 0.00 0.00 0.00 2.57
1250 1255 1.184970 TGATCAGCACTGGACCGTCA 61.185 55.000 0.00 0.00 0.00 4.35
1251 1256 0.459237 CTGATCAGCACTGGACCGTC 60.459 60.000 10.38 0.00 0.00 4.79
1252 1257 0.900182 TCTGATCAGCACTGGACCGT 60.900 55.000 18.36 0.00 0.00 4.83
1253 1258 0.463204 ATCTGATCAGCACTGGACCG 59.537 55.000 18.36 0.00 0.00 4.79
1254 1259 2.432146 TGTATCTGATCAGCACTGGACC 59.568 50.000 18.36 0.74 0.00 4.46
1255 1260 3.808466 TGTATCTGATCAGCACTGGAC 57.192 47.619 18.36 9.14 0.00 4.02
1256 1261 3.429410 CGTTGTATCTGATCAGCACTGGA 60.429 47.826 18.36 0.00 0.00 3.86
1257 1262 2.862536 CGTTGTATCTGATCAGCACTGG 59.137 50.000 18.36 7.78 0.00 4.00
1258 1263 3.515630 ACGTTGTATCTGATCAGCACTG 58.484 45.455 18.36 13.11 0.00 3.66
1259 1264 3.193479 TGACGTTGTATCTGATCAGCACT 59.807 43.478 18.36 7.58 0.00 4.40
1260 1265 3.511699 TGACGTTGTATCTGATCAGCAC 58.488 45.455 18.36 17.12 0.00 4.40
1261 1266 3.193479 ACTGACGTTGTATCTGATCAGCA 59.807 43.478 18.36 7.62 37.65 4.41
1263 1268 3.549471 GCACTGACGTTGTATCTGATCAG 59.451 47.826 17.07 17.07 39.56 2.90
1264 1269 3.193479 AGCACTGACGTTGTATCTGATCA 59.807 43.478 0.00 0.00 0.00 2.92
1265 1270 3.775202 AGCACTGACGTTGTATCTGATC 58.225 45.455 0.00 0.00 0.00 2.92
1266 1271 3.876274 AGCACTGACGTTGTATCTGAT 57.124 42.857 0.00 0.00 0.00 2.90
1267 1272 4.776795 TTAGCACTGACGTTGTATCTGA 57.223 40.909 0.00 0.00 0.00 3.27
1268 1273 4.684242 TGTTTAGCACTGACGTTGTATCTG 59.316 41.667 0.00 0.00 0.00 2.90
1269 1274 4.878439 TGTTTAGCACTGACGTTGTATCT 58.122 39.130 0.00 0.00 0.00 1.98
1270 1275 5.779806 ATGTTTAGCACTGACGTTGTATC 57.220 39.130 0.00 0.00 0.00 2.24
1272 1277 6.869388 TGAATATGTTTAGCACTGACGTTGTA 59.131 34.615 0.00 0.00 0.00 2.41
1274 1279 6.164408 TGAATATGTTTAGCACTGACGTTG 57.836 37.500 0.00 0.00 0.00 4.10
1276 1281 7.254455 GCTTATGAATATGTTTAGCACTGACGT 60.254 37.037 0.00 0.00 0.00 4.34
1277 1282 7.065894 GCTTATGAATATGTTTAGCACTGACG 58.934 38.462 0.00 0.00 0.00 4.35
1278 1283 7.042725 TCGCTTATGAATATGTTTAGCACTGAC 60.043 37.037 0.00 0.00 0.00 3.51
1279 1284 6.983890 TCGCTTATGAATATGTTTAGCACTGA 59.016 34.615 0.00 0.00 0.00 3.41
1430 1437 5.636903 ATCATCTTGCTACCCACACTAAT 57.363 39.130 0.00 0.00 0.00 1.73
1445 1452 6.555360 AGGAAAACCGAGGTAGATATCATCTT 59.445 38.462 5.32 0.00 40.76 2.40
1469 1476 4.077300 TGGCCATACTAGAAAGCATCAG 57.923 45.455 0.00 0.00 0.00 2.90
1477 1484 5.366482 TGCTAAACATGGCCATACTAGAA 57.634 39.130 20.30 10.93 0.00 2.10
1479 1486 9.265901 GATATATGCTAAACATGGCCATACTAG 57.734 37.037 20.30 18.60 40.06 2.57
1484 1491 5.653769 GTGGATATATGCTAAACATGGCCAT 59.346 40.000 14.09 14.09 40.06 4.40
1498 1505 3.854666 CGAGCAAGGAGGTGGATATATG 58.145 50.000 0.00 0.00 0.00 1.78
1605 1628 9.903682 AATAAAGAAAATGTCACTGAACTGATG 57.096 29.630 0.00 0.00 0.00 3.07
1622 1645 8.619546 CCCAAAGCAAATTGTGAAATAAAGAAA 58.380 29.630 0.00 0.00 0.00 2.52
1623 1646 7.989741 TCCCAAAGCAAATTGTGAAATAAAGAA 59.010 29.630 0.00 0.00 0.00 2.52
1635 1658 4.685628 GTGTACACATCCCAAAGCAAATTG 59.314 41.667 21.14 0.00 0.00 2.32
1636 1659 4.343526 TGTGTACACATCCCAAAGCAAATT 59.656 37.500 24.62 0.00 36.21 1.82
1682 1812 5.247862 ACTGCATATCAACTGAACATGTCA 58.752 37.500 0.00 0.00 34.17 3.58
1683 1813 5.808042 ACTGCATATCAACTGAACATGTC 57.192 39.130 0.00 0.00 0.00 3.06
1711 1841 3.686726 GGTCCAAGAACATAGCACAAGAG 59.313 47.826 0.00 0.00 0.00 2.85
1733 1863 2.557924 TGGTTCTAATTGGCACTTGCTG 59.442 45.455 0.00 0.00 41.70 4.41
1746 1876 9.866655 AAATCAGCCTAAATGATATGGTTCTAA 57.133 29.630 0.00 0.00 36.38 2.10
1756 1886 4.098960 CCAGCACAAATCAGCCTAAATGAT 59.901 41.667 0.00 0.00 39.06 2.45
1792 1922 0.109039 TCGCATTGGAACGACGATCA 60.109 50.000 0.00 0.00 32.45 2.92
1909 2039 4.763793 CCAATCATCGGAGCAAAGGAATAT 59.236 41.667 0.00 0.00 0.00 1.28
1923 2053 0.820891 CTTCCAGGGCCCAATCATCG 60.821 60.000 27.56 1.40 0.00 3.84
1988 2118 8.087982 TCTAAACATGAGCAAACTGAAACTAG 57.912 34.615 0.00 0.00 0.00 2.57
1990 2120 6.942532 TCTAAACATGAGCAAACTGAAACT 57.057 33.333 0.00 0.00 0.00 2.66
2094 2224 4.621068 ACTGCATACACATCCATTTTCG 57.379 40.909 0.00 0.00 0.00 3.46
2121 2258 4.142609 ACATGTCACTGAACTGAAGTGT 57.857 40.909 0.00 0.00 44.42 3.55
2148 2285 2.306847 TCCCAAAGCAAGTCCTGAAAC 58.693 47.619 0.00 0.00 0.00 2.78
2269 2406 7.662669 CAGGAAAATCTTGACCAAAAATCCAAT 59.337 33.333 0.00 0.00 0.00 3.16
2357 2494 6.124340 ACTGTGATAAGAATTCATCCATGCA 58.876 36.000 8.44 0.00 0.00 3.96
2526 2664 4.763073 TGTTCAGCATACATCTTCTCCAG 58.237 43.478 0.00 0.00 0.00 3.86
2542 2680 5.431765 AGGGTACATAAATCTGCTGTTCAG 58.568 41.667 0.00 0.00 44.21 3.02
2586 2733 3.792401 CAATTGCACGGTAGTCAGGATA 58.208 45.455 0.00 0.00 0.00 2.59
2597 2744 3.451894 GGGGGAGCAATTGCACGG 61.452 66.667 30.89 0.00 45.16 4.94
2614 2761 0.035152 TGGCCTCAATACCACTGCAG 60.035 55.000 13.48 13.48 0.00 4.41
2767 2914 6.545298 AGCAGACATATCGCATATATCTGAGA 59.455 38.462 19.75 0.00 45.29 3.27
2790 2937 2.814336 GGTTAGGTTGGCTGCATATAGC 59.186 50.000 0.50 0.00 45.96 2.97
2791 2938 4.319177 GAGGTTAGGTTGGCTGCATATAG 58.681 47.826 0.50 0.00 0.00 1.31
2792 2939 3.072476 GGAGGTTAGGTTGGCTGCATATA 59.928 47.826 0.50 0.00 0.00 0.86
2793 2940 2.158608 GGAGGTTAGGTTGGCTGCATAT 60.159 50.000 0.50 0.00 0.00 1.78
2794 2941 1.211949 GGAGGTTAGGTTGGCTGCATA 59.788 52.381 0.50 0.00 0.00 3.14
2795 2942 0.034089 GGAGGTTAGGTTGGCTGCAT 60.034 55.000 0.50 0.00 0.00 3.96
2796 2943 1.378762 GGAGGTTAGGTTGGCTGCA 59.621 57.895 0.50 0.00 0.00 4.41
2797 2944 0.034089 ATGGAGGTTAGGTTGGCTGC 60.034 55.000 0.00 0.00 0.00 5.25
2798 2945 2.094675 CAATGGAGGTTAGGTTGGCTG 58.905 52.381 0.00 0.00 0.00 4.85
2799 2946 1.616994 GCAATGGAGGTTAGGTTGGCT 60.617 52.381 0.00 0.00 0.00 4.75
2800 2947 0.817654 GCAATGGAGGTTAGGTTGGC 59.182 55.000 0.00 0.00 0.00 4.52
2801 2948 2.369394 GAGCAATGGAGGTTAGGTTGG 58.631 52.381 0.00 0.00 0.00 3.77
2802 2949 2.009774 CGAGCAATGGAGGTTAGGTTG 58.990 52.381 0.00 0.00 0.00 3.77
2803 2950 1.679032 GCGAGCAATGGAGGTTAGGTT 60.679 52.381 0.00 0.00 0.00 3.50
2804 2951 0.107654 GCGAGCAATGGAGGTTAGGT 60.108 55.000 0.00 0.00 0.00 3.08
2805 2952 0.107703 TGCGAGCAATGGAGGTTAGG 60.108 55.000 0.00 0.00 0.00 2.69
2806 2953 1.959042 ATGCGAGCAATGGAGGTTAG 58.041 50.000 0.57 0.00 0.00 2.34
2807 2954 3.769739 ATATGCGAGCAATGGAGGTTA 57.230 42.857 0.57 0.00 0.00 2.85
2808 2955 2.645838 ATATGCGAGCAATGGAGGTT 57.354 45.000 0.57 0.00 0.00 3.50
2809 2956 3.008375 ACATATATGCGAGCAATGGAGGT 59.992 43.478 12.79 0.00 0.00 3.85
2810 2957 3.373130 CACATATATGCGAGCAATGGAGG 59.627 47.826 12.79 0.00 0.00 4.30
2811 2958 4.248058 TCACATATATGCGAGCAATGGAG 58.752 43.478 12.79 0.16 0.00 3.86
2812 2959 4.270245 TCACATATATGCGAGCAATGGA 57.730 40.909 12.79 0.00 0.00 3.41
2813 2960 6.259387 ACATATCACATATATGCGAGCAATGG 59.741 38.462 12.79 0.67 35.88 3.16
2814 2961 7.224167 AGACATATCACATATATGCGAGCAATG 59.776 37.037 12.79 14.38 35.88 2.82
2815 2962 7.224167 CAGACATATCACATATATGCGAGCAAT 59.776 37.037 12.79 2.18 35.88 3.56
3027 3177 4.376146 TCCTTGCCTAACAAAAATGCAAC 58.624 39.130 0.00 0.00 37.96 4.17
3224 3374 2.611518 CACTAGCCAGCAGAGTAACAC 58.388 52.381 0.00 0.00 0.00 3.32
3225 3375 1.550524 CCACTAGCCAGCAGAGTAACA 59.449 52.381 0.00 0.00 0.00 2.41
3226 3376 1.134670 CCCACTAGCCAGCAGAGTAAC 60.135 57.143 0.00 0.00 0.00 2.50
3227 3377 1.195115 CCCACTAGCCAGCAGAGTAA 58.805 55.000 0.00 0.00 0.00 2.24
3228 3378 0.041238 ACCCACTAGCCAGCAGAGTA 59.959 55.000 0.00 0.00 0.00 2.59
3229 3379 0.838122 AACCCACTAGCCAGCAGAGT 60.838 55.000 0.00 0.00 0.00 3.24
3230 3380 0.326264 AAACCCACTAGCCAGCAGAG 59.674 55.000 0.00 0.00 0.00 3.35
3231 3381 0.771127 AAAACCCACTAGCCAGCAGA 59.229 50.000 0.00 0.00 0.00 4.26
3232 3382 2.489938 TAAAACCCACTAGCCAGCAG 57.510 50.000 0.00 0.00 0.00 4.24
3233 3383 2.576191 AGATAAAACCCACTAGCCAGCA 59.424 45.455 0.00 0.00 0.00 4.41
3234 3384 3.206964 GAGATAAAACCCACTAGCCAGC 58.793 50.000 0.00 0.00 0.00 4.85
3235 3385 4.487714 TGAGATAAAACCCACTAGCCAG 57.512 45.455 0.00 0.00 0.00 4.85
3236 3386 4.227300 ACATGAGATAAAACCCACTAGCCA 59.773 41.667 0.00 0.00 0.00 4.75
3237 3387 4.576463 CACATGAGATAAAACCCACTAGCC 59.424 45.833 0.00 0.00 0.00 3.93
3238 3388 4.035675 GCACATGAGATAAAACCCACTAGC 59.964 45.833 0.00 0.00 0.00 3.42
3239 3389 5.431765 AGCACATGAGATAAAACCCACTAG 58.568 41.667 0.00 0.00 0.00 2.57
3240 3390 5.435686 AGCACATGAGATAAAACCCACTA 57.564 39.130 0.00 0.00 0.00 2.74
3241 3391 4.307032 AGCACATGAGATAAAACCCACT 57.693 40.909 0.00 0.00 0.00 4.00
3242 3392 5.822519 TCATAGCACATGAGATAAAACCCAC 59.177 40.000 0.00 0.00 0.00 4.61
3243 3393 6.000246 TCATAGCACATGAGATAAAACCCA 58.000 37.500 0.00 0.00 0.00 4.51
3244 3394 7.013655 ACAATCATAGCACATGAGATAAAACCC 59.986 37.037 0.00 0.00 0.00 4.11
3245 3395 7.934457 ACAATCATAGCACATGAGATAAAACC 58.066 34.615 0.00 0.00 0.00 3.27
3246 3396 8.834465 AGACAATCATAGCACATGAGATAAAAC 58.166 33.333 0.00 0.00 0.00 2.43
3247 3397 8.833493 CAGACAATCATAGCACATGAGATAAAA 58.167 33.333 0.00 0.00 0.00 1.52
3350 3501 4.640201 CACAGGTCGATTGGTATGGATTTT 59.360 41.667 0.00 0.00 0.00 1.82
3356 3507 4.035558 CCAATTCACAGGTCGATTGGTATG 59.964 45.833 12.09 0.00 35.20 2.39
3369 3520 6.098695 ACCCAAATATCCAATCCAATTCACAG 59.901 38.462 0.00 0.00 0.00 3.66
3374 3525 9.451206 AATCTAACCCAAATATCCAATCCAATT 57.549 29.630 0.00 0.00 0.00 2.32
3409 3602 5.301551 TGCTTCTTTTTGCTCAGGACATTAA 59.698 36.000 0.00 0.00 0.00 1.40
3410 3603 4.826733 TGCTTCTTTTTGCTCAGGACATTA 59.173 37.500 0.00 0.00 0.00 1.90
3504 3717 5.570206 CGTGATTCTGAAAATGGTGAACATG 59.430 40.000 0.00 0.00 40.44 3.21
3510 3723 7.086376 AGAAAATCGTGATTCTGAAAATGGTG 58.914 34.615 0.00 0.00 34.70 4.17
3631 3857 1.702957 CCCCGGAAATTATAGCTCCCA 59.297 52.381 0.73 0.00 0.00 4.37
3634 3860 5.847111 AAAAACCCCGGAAATTATAGCTC 57.153 39.130 0.73 0.00 0.00 4.09
3686 3912 4.433186 TGAAAATGCTAAATGGTGGACG 57.567 40.909 0.00 0.00 0.00 4.79
3688 3914 5.721000 AGGAATGAAAATGCTAAATGGTGGA 59.279 36.000 0.00 0.00 0.00 4.02
3751 3977 3.495670 ACTCAATAGCGACAGACAGTC 57.504 47.619 0.00 0.00 44.02 3.51
3752 3978 3.944055 AACTCAATAGCGACAGACAGT 57.056 42.857 0.00 0.00 0.00 3.55
3753 3979 4.449068 ACAAAACTCAATAGCGACAGACAG 59.551 41.667 0.00 0.00 0.00 3.51
3755 3981 4.992381 ACAAAACTCAATAGCGACAGAC 57.008 40.909 0.00 0.00 0.00 3.51
3756 3982 5.049680 GGAAACAAAACTCAATAGCGACAGA 60.050 40.000 0.00 0.00 0.00 3.41
3876 4118 8.129496 TCCAGTGTGAATTACTACTACAATCA 57.871 34.615 0.00 0.00 0.00 2.57
3884 4126 9.088512 CATAACTCTTCCAGTGTGAATTACTAC 57.911 37.037 0.00 0.00 34.56 2.73
3885 4127 7.764443 GCATAACTCTTCCAGTGTGAATTACTA 59.236 37.037 0.00 0.00 34.56 1.82
3886 4128 6.595716 GCATAACTCTTCCAGTGTGAATTACT 59.404 38.462 0.00 0.00 34.56 2.24
3887 4129 6.371548 TGCATAACTCTTCCAGTGTGAATTAC 59.628 38.462 0.00 0.00 34.56 1.89
3888 4130 6.472016 TGCATAACTCTTCCAGTGTGAATTA 58.528 36.000 0.00 0.00 34.56 1.40
3890 4132 4.910195 TGCATAACTCTTCCAGTGTGAAT 58.090 39.130 0.00 0.00 34.56 2.57
3891 4133 4.350368 TGCATAACTCTTCCAGTGTGAA 57.650 40.909 0.00 0.00 34.56 3.18
3900 4142 7.076842 TCAGCTGTTATTTGCATAACTCTTC 57.923 36.000 14.67 0.13 43.73 2.87
3903 4145 9.390795 CATAATCAGCTGTTATTTGCATAACTC 57.609 33.333 14.67 4.23 43.73 3.01
3908 4150 9.439500 AAAAACATAATCAGCTGTTATTTGCAT 57.561 25.926 14.67 0.00 34.61 3.96
3956 4202 5.269505 AGTTTCCTCATCGTATCCTCTTG 57.730 43.478 0.00 0.00 0.00 3.02
3966 4212 5.352569 AGCAATCAAACTAGTTTCCTCATCG 59.647 40.000 18.00 5.65 0.00 3.84
3969 4215 5.620206 TGAGCAATCAAACTAGTTTCCTCA 58.380 37.500 18.00 18.30 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.