Multiple sequence alignment - TraesCS1D01G286200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G286200 chr1D 100.000 3251 0 0 1 3251 384476189 384472939 0.000000e+00 6004.0
1 TraesCS1D01G286200 chr1A 89.484 2539 110 50 458 2949 484302272 484299844 0.000000e+00 3064.0
2 TraesCS1D01G286200 chr1A 85.225 467 31 16 1 446 484326735 484326286 2.300000e-121 446.0
3 TraesCS1D01G286200 chr1B 86.550 2684 137 70 2 2583 515915041 515912480 0.000000e+00 2750.0
4 TraesCS1D01G286200 chr1B 90.227 440 14 8 2581 3002 515910036 515909608 6.130000e-152 547.0
5 TraesCS1D01G286200 chr6A 88.515 505 30 20 1076 1580 389756381 389756857 1.300000e-163 586.0
6 TraesCS1D01G286200 chr3D 82.022 89 16 0 1146 1234 460414672 460414760 3.480000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G286200 chr1D 384472939 384476189 3250 True 6004.0 6004 100.0000 1 3251 1 chr1D.!!$R1 3250
1 TraesCS1D01G286200 chr1A 484299844 484302272 2428 True 3064.0 3064 89.4840 458 2949 1 chr1A.!!$R1 2491
2 TraesCS1D01G286200 chr1B 515909608 515915041 5433 True 1648.5 2750 88.3885 2 3002 2 chr1B.!!$R1 3000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 387 0.035317 TTGCCTCGCAATGACTGACT 59.965 50.0 0.0 0.0 43.99 3.41 F
755 819 0.102844 GCAAACAAAGCACCAGAGCA 59.897 50.0 0.0 0.0 36.85 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1752 0.395312 GAACGGGTTCTTCCTCCACA 59.605 55.0 4.35 0.0 36.69 4.17 R
2495 2640 0.175989 CTCGTAAGACTTCTGGGGGC 59.824 60.0 0.00 0.0 45.01 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.819582 TACTACTACCCGCAAGCACC 59.180 55.000 0.00 0.00 0.00 5.01
47 48 1.017387 CCCACGGCAGCTAGAAAATC 58.983 55.000 0.00 0.00 0.00 2.17
50 51 2.205074 CACGGCAGCTAGAAAATCGAT 58.795 47.619 0.00 0.00 0.00 3.59
51 52 2.219674 CACGGCAGCTAGAAAATCGATC 59.780 50.000 0.00 0.00 0.00 3.69
52 53 1.453524 CGGCAGCTAGAAAATCGATCG 59.546 52.381 9.36 9.36 0.00 3.69
53 54 1.193426 GGCAGCTAGAAAATCGATCGC 59.807 52.381 11.09 0.00 0.00 4.58
64 65 4.895224 AAATCGATCGCTCACTGTAGTA 57.105 40.909 11.09 0.00 0.00 1.82
65 66 4.475763 AATCGATCGCTCACTGTAGTAG 57.524 45.455 11.09 0.00 0.00 2.57
66 67 2.902523 TCGATCGCTCACTGTAGTAGT 58.097 47.619 11.09 0.00 41.36 2.73
67 68 4.050852 TCGATCGCTCACTGTAGTAGTA 57.949 45.455 11.09 0.00 37.60 1.82
68 69 4.049869 TCGATCGCTCACTGTAGTAGTAG 58.950 47.826 11.09 0.00 37.60 2.57
69 70 3.803231 CGATCGCTCACTGTAGTAGTAGT 59.197 47.826 0.26 0.00 37.60 2.73
70 71 4.981054 CGATCGCTCACTGTAGTAGTAGTA 59.019 45.833 0.26 0.00 37.60 1.82
72 73 6.183360 CGATCGCTCACTGTAGTAGTAGTATC 60.183 46.154 0.26 0.00 37.60 2.24
73 74 4.981054 TCGCTCACTGTAGTAGTAGTATCG 59.019 45.833 0.00 0.00 37.60 2.92
75 76 5.332430 CGCTCACTGTAGTAGTAGTATCGTG 60.332 48.000 8.98 8.98 37.60 4.35
76 77 5.523188 GCTCACTGTAGTAGTAGTATCGTGT 59.477 44.000 12.55 0.00 37.60 4.49
77 78 6.509837 GCTCACTGTAGTAGTAGTATCGTGTG 60.510 46.154 12.55 11.70 37.60 3.82
78 79 5.292834 TCACTGTAGTAGTAGTATCGTGTGC 59.707 44.000 12.55 0.00 37.60 4.57
191 218 6.672147 CCAAGGATTTTGAGCGGATTTATAG 58.328 40.000 0.00 0.00 0.00 1.31
193 220 5.941788 AGGATTTTGAGCGGATTTATAGGT 58.058 37.500 0.00 0.00 0.00 3.08
203 230 6.357367 AGCGGATTTATAGGTTTGATTCAGT 58.643 36.000 0.00 0.00 0.00 3.41
282 314 2.311124 GCTAAATCAGCCGTACCACT 57.689 50.000 0.00 0.00 45.23 4.00
283 315 1.933853 GCTAAATCAGCCGTACCACTG 59.066 52.381 3.86 3.86 45.23 3.66
285 317 2.094762 AAATCAGCCGTACCACTGTC 57.905 50.000 9.05 0.00 35.37 3.51
286 318 0.249398 AATCAGCCGTACCACTGTCC 59.751 55.000 9.05 0.00 35.37 4.02
287 319 0.902984 ATCAGCCGTACCACTGTCCA 60.903 55.000 9.05 0.00 35.37 4.02
288 320 0.902984 TCAGCCGTACCACTGTCCAT 60.903 55.000 9.05 0.00 35.37 3.41
289 321 0.821517 CAGCCGTACCACTGTCCATA 59.178 55.000 2.33 0.00 0.00 2.74
290 322 1.206132 CAGCCGTACCACTGTCCATAA 59.794 52.381 2.33 0.00 0.00 1.90
291 323 2.116238 AGCCGTACCACTGTCCATAAT 58.884 47.619 0.00 0.00 0.00 1.28
292 324 2.102588 AGCCGTACCACTGTCCATAATC 59.897 50.000 0.00 0.00 0.00 1.75
293 325 2.805657 GCCGTACCACTGTCCATAATCC 60.806 54.545 0.00 0.00 0.00 3.01
294 326 2.432874 CCGTACCACTGTCCATAATCCA 59.567 50.000 0.00 0.00 0.00 3.41
295 327 3.492656 CCGTACCACTGTCCATAATCCAG 60.493 52.174 0.00 0.00 0.00 3.86
314 346 3.775202 CAGTGGTTGGAACTAGAGATCG 58.225 50.000 0.00 0.00 0.00 3.69
315 347 2.166664 AGTGGTTGGAACTAGAGATCGC 59.833 50.000 0.00 0.00 0.00 4.58
316 348 2.166664 GTGGTTGGAACTAGAGATCGCT 59.833 50.000 3.88 3.88 0.00 4.93
317 349 2.427453 TGGTTGGAACTAGAGATCGCTC 59.573 50.000 0.82 0.00 41.62 5.03
318 350 2.427453 GGTTGGAACTAGAGATCGCTCA 59.573 50.000 0.82 0.00 43.81 4.26
319 351 3.490078 GGTTGGAACTAGAGATCGCTCAG 60.490 52.174 0.82 2.15 43.81 3.35
355 387 0.035317 TTGCCTCGCAATGACTGACT 59.965 50.000 0.00 0.00 43.99 3.41
356 388 0.671472 TGCCTCGCAATGACTGACTG 60.671 55.000 0.00 0.00 34.76 3.51
357 389 0.390340 GCCTCGCAATGACTGACTGA 60.390 55.000 0.00 0.00 0.00 3.41
358 390 1.354040 CCTCGCAATGACTGACTGAC 58.646 55.000 0.00 0.00 0.00 3.51
364 396 0.247736 AATGACTGACTGACCTCGCC 59.752 55.000 0.00 0.00 0.00 5.54
369 401 0.888619 CTGACTGACCTCGCCTTGTA 59.111 55.000 0.00 0.00 0.00 2.41
379 411 0.519519 TCGCCTTGTAATTTGCACCG 59.480 50.000 0.00 0.00 0.00 4.94
391 423 4.418328 GCACCGGTACCCATGCCA 62.418 66.667 19.88 0.00 31.46 4.92
393 425 1.823470 CACCGGTACCCATGCCATG 60.823 63.158 6.87 0.00 0.00 3.66
394 426 2.906897 CCGGTACCCATGCCATGC 60.907 66.667 6.25 0.00 0.00 4.06
395 427 2.906897 CGGTACCCATGCCATGCC 60.907 66.667 6.25 0.00 0.00 4.40
396 428 2.906897 GGTACCCATGCCATGCCG 60.907 66.667 0.00 0.00 0.00 5.69
397 429 2.124320 GTACCCATGCCATGCCGT 60.124 61.111 0.00 0.04 0.00 5.68
398 430 1.147376 GTACCCATGCCATGCCGTA 59.853 57.895 0.00 0.00 0.00 4.02
399 431 0.464735 GTACCCATGCCATGCCGTAA 60.465 55.000 0.00 0.00 0.00 3.18
400 432 0.464735 TACCCATGCCATGCCGTAAC 60.465 55.000 0.00 0.00 0.00 2.50
406 439 0.106769 TGCCATGCCGTAACCATCAT 60.107 50.000 0.00 0.00 0.00 2.45
412 445 1.831106 TGCCGTAACCATCATCACTCT 59.169 47.619 0.00 0.00 0.00 3.24
425 465 6.266330 CCATCATCACTCTGAATACAGTAGGA 59.734 42.308 0.00 0.00 43.81 2.94
439 479 9.595823 GAATACAGTAGGAGCAGTATTTTTACA 57.404 33.333 0.00 0.00 37.31 2.41
440 480 8.943909 ATACAGTAGGAGCAGTATTTTTACAC 57.056 34.615 0.00 0.00 0.00 2.90
441 481 7.005709 ACAGTAGGAGCAGTATTTTTACACT 57.994 36.000 0.00 0.00 0.00 3.55
456 496 6.627395 TTTTACACTGTCAAATCGAATGGT 57.373 33.333 0.00 0.00 0.00 3.55
457 497 5.605564 TTACACTGTCAAATCGAATGGTG 57.394 39.130 0.00 0.00 0.00 4.17
458 498 3.476552 ACACTGTCAAATCGAATGGTGT 58.523 40.909 0.00 0.00 31.97 4.16
459 499 4.637276 ACACTGTCAAATCGAATGGTGTA 58.363 39.130 10.94 0.00 33.77 2.90
460 500 4.451096 ACACTGTCAAATCGAATGGTGTAC 59.549 41.667 10.94 0.00 33.77 2.90
465 505 4.031426 GTCAAATCGAATGGTGTACGAGAC 59.969 45.833 0.00 0.00 39.31 3.36
477 517 1.532007 GTACGAGACGGCTAGATGGAG 59.468 57.143 5.00 0.00 0.00 3.86
492 532 6.410388 GCTAGATGGAGTAGGATAGATAGCCT 60.410 46.154 1.74 1.74 45.48 4.58
516 556 6.121590 TGATAGCCATGCATGTAAAGAAGAA 58.878 36.000 24.58 0.04 0.00 2.52
600 640 5.524284 CCCTAATCGAGTAATCAGTCACTG 58.476 45.833 0.00 0.00 0.00 3.66
752 816 1.405105 GTGAGCAAACAAAGCACCAGA 59.595 47.619 0.00 0.00 0.00 3.86
753 817 1.677576 TGAGCAAACAAAGCACCAGAG 59.322 47.619 0.00 0.00 0.00 3.35
754 818 0.386838 AGCAAACAAAGCACCAGAGC 59.613 50.000 0.00 0.00 0.00 4.09
755 819 0.102844 GCAAACAAAGCACCAGAGCA 59.897 50.000 0.00 0.00 36.85 4.26
756 820 1.269936 GCAAACAAAGCACCAGAGCAT 60.270 47.619 0.00 0.00 36.85 3.79
757 821 2.669364 CAAACAAAGCACCAGAGCATC 58.331 47.619 0.00 0.00 36.85 3.91
758 822 0.877071 AACAAAGCACCAGAGCATCG 59.123 50.000 0.00 0.00 42.67 3.84
759 823 1.136147 CAAAGCACCAGAGCATCGC 59.864 57.895 0.00 0.00 42.67 4.58
760 824 1.002868 AAAGCACCAGAGCATCGCT 60.003 52.632 0.00 0.00 43.88 4.93
761 825 1.303799 AAAGCACCAGAGCATCGCTG 61.304 55.000 0.00 0.00 39.88 5.18
837 906 2.510613 TGGTAGTTTAGTTTGCTGGGC 58.489 47.619 0.00 0.00 0.00 5.36
910 998 1.607178 CCACTGCCATTTCTGCCCA 60.607 57.895 0.00 0.00 0.00 5.36
954 1042 2.811317 GCGGAGTGAAGTGAGGCG 60.811 66.667 0.00 0.00 0.00 5.52
956 1044 1.153939 CGGAGTGAAGTGAGGCGAG 60.154 63.158 0.00 0.00 0.00 5.03
958 1046 1.536943 GGAGTGAAGTGAGGCGAGGT 61.537 60.000 0.00 0.00 0.00 3.85
966 1054 2.276116 TGAGGCGAGGTCACCAGAC 61.276 63.158 0.00 0.00 44.21 3.51
974 1062 3.236391 GTCACCAGACCACCACCA 58.764 61.111 0.00 0.00 38.89 4.17
976 1064 0.535102 GTCACCAGACCACCACCAAG 60.535 60.000 0.00 0.00 38.89 3.61
977 1065 1.898574 CACCAGACCACCACCAAGC 60.899 63.158 0.00 0.00 0.00 4.01
978 1066 2.078665 ACCAGACCACCACCAAGCT 61.079 57.895 0.00 0.00 0.00 3.74
979 1067 1.151450 CCAGACCACCACCAAGCTT 59.849 57.895 0.00 0.00 0.00 3.74
980 1068 0.400213 CCAGACCACCACCAAGCTTA 59.600 55.000 0.00 0.00 0.00 3.09
981 1069 1.004745 CCAGACCACCACCAAGCTTAT 59.995 52.381 0.00 0.00 0.00 1.73
982 1070 2.238646 CCAGACCACCACCAAGCTTATA 59.761 50.000 0.00 0.00 0.00 0.98
983 1071 3.270877 CAGACCACCACCAAGCTTATAC 58.729 50.000 0.00 0.00 0.00 1.47
984 1072 2.910319 AGACCACCACCAAGCTTATACA 59.090 45.455 0.00 0.00 0.00 2.29
985 1073 3.055094 AGACCACCACCAAGCTTATACAG 60.055 47.826 0.00 0.00 0.00 2.74
994 1082 0.398664 AGCTTATACAGGGCGAGGGT 60.399 55.000 0.00 0.00 0.00 4.34
1113 1204 2.069273 GAGTTCCACTTCCACATGTCG 58.931 52.381 0.00 0.00 0.00 4.35
1353 1444 2.551270 GCCAACTCGTGCTTCGTG 59.449 61.111 2.39 2.90 40.80 4.35
1554 1648 2.436646 ATGTTCGCCGGGAAGCAG 60.437 61.111 2.18 0.00 34.69 4.24
1585 1679 2.370393 GGCGACGACAAGAACGGTC 61.370 63.158 0.00 0.00 34.93 4.79
1607 1701 2.893398 CGGAAAGGACCTCTCCGG 59.107 66.667 26.11 9.49 46.66 5.14
1622 1716 4.386951 CGGTCACGGACATGGCCA 62.387 66.667 20.22 8.56 45.29 5.36
1623 1717 2.272146 GGTCACGGACATGGCCAT 59.728 61.111 20.22 14.09 44.34 4.40
1624 1718 1.524961 GGTCACGGACATGGCCATA 59.475 57.895 20.30 0.00 44.34 2.74
1668 1774 1.740664 GAGGAAGAACCCGTTCGGC 60.741 63.158 5.66 0.00 43.97 5.54
1767 1873 2.787915 GTCGTCGTCCGGTACTCC 59.212 66.667 0.00 0.00 37.11 3.85
1821 1930 3.340253 TCGTCGTCGTCGTGCTCA 61.340 61.111 11.41 0.00 38.33 4.26
2195 2310 3.652274 CATTCTGGAAATTTTGTGGCGT 58.348 40.909 0.00 0.00 0.00 5.68
2199 2314 3.052036 CTGGAAATTTTGTGGCGTTGAG 58.948 45.455 0.00 0.00 0.00 3.02
2207 2322 1.279840 GTGGCGTTGAGACTTGTGC 59.720 57.895 0.00 0.00 0.00 4.57
2242 2357 3.550842 GGTGTTGCTCAAATCAACTGACC 60.551 47.826 7.28 4.19 43.00 4.02
2316 2456 8.870075 ACTCTTAATTTTTCTCCTTGCAGTAT 57.130 30.769 0.00 0.00 0.00 2.12
2317 2457 8.734386 ACTCTTAATTTTTCTCCTTGCAGTATG 58.266 33.333 0.00 0.00 40.87 2.39
2318 2458 8.055279 TCTTAATTTTTCTCCTTGCAGTATGG 57.945 34.615 0.00 0.00 35.86 2.74
2319 2459 7.669722 TCTTAATTTTTCTCCTTGCAGTATGGT 59.330 33.333 0.00 0.00 35.86 3.55
2320 2460 8.871629 TTAATTTTTCTCCTTGCAGTATGGTA 57.128 30.769 0.00 0.00 35.86 3.25
2321 2461 7.775053 AATTTTTCTCCTTGCAGTATGGTAA 57.225 32.000 0.00 0.00 35.86 2.85
2322 2462 7.961326 ATTTTTCTCCTTGCAGTATGGTAAT 57.039 32.000 0.00 0.00 35.86 1.89
2325 2465 5.435686 TCTCCTTGCAGTATGGTAATTGT 57.564 39.130 0.00 0.00 35.86 2.71
2346 2486 4.636648 TGTTAACCACGAAACAACATCTGT 59.363 37.500 2.48 0.00 41.27 3.41
2492 2637 3.620929 GGCACGTATCAGTCGATCTTA 57.379 47.619 0.00 0.00 32.73 2.10
2493 2638 3.556513 GGCACGTATCAGTCGATCTTAG 58.443 50.000 0.00 0.00 32.73 2.18
2494 2639 2.974536 GCACGTATCAGTCGATCTTAGC 59.025 50.000 0.00 0.00 32.73 3.09
2495 2640 3.219189 CACGTATCAGTCGATCTTAGCG 58.781 50.000 0.00 0.00 32.73 4.26
2496 2641 2.235020 CGTATCAGTCGATCTTAGCGC 58.765 52.381 0.00 0.00 32.73 5.92
2535 2680 6.127168 ACGAGTGTGAAAATGACCTCCATATA 60.127 38.462 0.00 0.00 34.45 0.86
2536 2681 6.931281 CGAGTGTGAAAATGACCTCCATATAT 59.069 38.462 0.00 0.00 34.45 0.86
2537 2682 7.442364 CGAGTGTGAAAATGACCTCCATATATT 59.558 37.037 0.00 0.00 34.45 1.28
2538 2683 9.778741 GAGTGTGAAAATGACCTCCATATATTA 57.221 33.333 0.00 0.00 34.45 0.98
2550 2695 8.949798 ACCTCCATATATTATTATTCCCCACT 57.050 34.615 0.00 0.00 0.00 4.00
2565 2710 1.401931 CCCACTGCTTGCATTTCTTCG 60.402 52.381 0.00 0.00 0.00 3.79
2635 5226 0.895100 AGGCCAAAGCAAAGATCGCA 60.895 50.000 5.01 0.00 42.56 5.10
2723 5325 1.268625 CCATCAATCCACCATCATGCG 59.731 52.381 0.00 0.00 0.00 4.73
2810 5418 6.240894 TCATGCCATTAGTTAATCTGGATCC 58.759 40.000 4.20 4.20 0.00 3.36
2830 5438 0.980754 AGGCCACGGTGGATCATACA 60.981 55.000 30.65 0.00 40.96 2.29
2837 5445 5.626809 GCCACGGTGGATCATACATACATAT 60.627 44.000 30.65 0.00 40.96 1.78
2838 5446 6.406512 GCCACGGTGGATCATACATACATATA 60.407 42.308 30.65 0.00 40.96 0.86
2839 5447 6.978659 CCACGGTGGATCATACATACATATAC 59.021 42.308 22.77 0.00 40.96 1.47
2841 5449 7.488150 CACGGTGGATCATACATACATATACAC 59.512 40.741 0.00 0.00 0.00 2.90
2951 5567 2.600731 CCGACACACAAAACTTGCAAA 58.399 42.857 0.00 0.00 0.00 3.68
2964 5580 2.623416 ACTTGCAAACTACAAAGGGCTC 59.377 45.455 0.00 0.00 0.00 4.70
2986 5606 5.297547 TCGATTTAATCCCACTACATCAGC 58.702 41.667 0.00 0.00 0.00 4.26
3002 5622 8.307483 ACTACATCAGCATATGTATTAGTGGTC 58.693 37.037 4.29 0.00 40.59 4.02
3003 5623 6.159293 ACATCAGCATATGTATTAGTGGTCG 58.841 40.000 4.29 0.00 38.31 4.79
3004 5624 5.784578 TCAGCATATGTATTAGTGGTCGT 57.215 39.130 4.29 0.00 0.00 4.34
3005 5625 5.769367 TCAGCATATGTATTAGTGGTCGTC 58.231 41.667 4.29 0.00 0.00 4.20
3006 5626 5.535030 TCAGCATATGTATTAGTGGTCGTCT 59.465 40.000 4.29 0.00 0.00 4.18
3007 5627 5.859114 CAGCATATGTATTAGTGGTCGTCTC 59.141 44.000 4.29 0.00 0.00 3.36
3008 5628 5.770663 AGCATATGTATTAGTGGTCGTCTCT 59.229 40.000 4.29 0.00 0.00 3.10
3009 5629 6.940867 AGCATATGTATTAGTGGTCGTCTCTA 59.059 38.462 4.29 0.00 0.00 2.43
3010 5630 7.022384 GCATATGTATTAGTGGTCGTCTCTAC 58.978 42.308 4.29 0.00 0.00 2.59
3011 5631 7.308408 GCATATGTATTAGTGGTCGTCTCTACA 60.308 40.741 4.29 0.00 0.00 2.74
3012 5632 8.565416 CATATGTATTAGTGGTCGTCTCTACAA 58.435 37.037 0.00 0.00 0.00 2.41
3013 5633 7.584122 ATGTATTAGTGGTCGTCTCTACAAT 57.416 36.000 0.00 0.00 0.00 2.71
3014 5634 8.687292 ATGTATTAGTGGTCGTCTCTACAATA 57.313 34.615 0.00 0.00 0.00 1.90
3015 5635 8.687292 TGTATTAGTGGTCGTCTCTACAATAT 57.313 34.615 0.00 0.00 0.00 1.28
3016 5636 8.565416 TGTATTAGTGGTCGTCTCTACAATATG 58.435 37.037 0.00 0.00 0.00 1.78
3017 5637 7.584122 ATTAGTGGTCGTCTCTACAATATGT 57.416 36.000 0.00 0.00 0.00 2.29
3018 5638 5.250235 AGTGGTCGTCTCTACAATATGTG 57.750 43.478 0.00 0.00 0.00 3.21
3019 5639 4.948004 AGTGGTCGTCTCTACAATATGTGA 59.052 41.667 0.00 0.00 0.00 3.58
3020 5640 5.417894 AGTGGTCGTCTCTACAATATGTGAA 59.582 40.000 0.00 0.00 0.00 3.18
3021 5641 5.744345 GTGGTCGTCTCTACAATATGTGAAG 59.256 44.000 0.00 0.00 0.00 3.02
3022 5642 5.650703 TGGTCGTCTCTACAATATGTGAAGA 59.349 40.000 0.00 0.00 0.00 2.87
3023 5643 6.152154 TGGTCGTCTCTACAATATGTGAAGAA 59.848 38.462 0.00 0.00 28.62 2.52
3024 5644 7.147897 TGGTCGTCTCTACAATATGTGAAGAAT 60.148 37.037 0.00 0.00 28.62 2.40
3025 5645 7.707035 GGTCGTCTCTACAATATGTGAAGAATT 59.293 37.037 0.00 0.00 28.62 2.17
3026 5646 9.731819 GTCGTCTCTACAATATGTGAAGAATTA 57.268 33.333 0.00 0.00 28.62 1.40
3050 5670 9.926158 TTAAGAATATTTACGAAGGTGTGTACA 57.074 29.630 0.00 0.00 0.00 2.90
3052 5672 8.420374 AGAATATTTACGAAGGTGTGTACATG 57.580 34.615 0.00 0.00 0.00 3.21
3053 5673 8.038944 AGAATATTTACGAAGGTGTGTACATGT 58.961 33.333 2.69 2.69 0.00 3.21
3054 5674 8.556213 AATATTTACGAAGGTGTGTACATGTT 57.444 30.769 2.30 0.00 0.00 2.71
3055 5675 6.870971 ATTTACGAAGGTGTGTACATGTTT 57.129 33.333 2.30 0.00 0.00 2.83
3056 5676 5.660629 TTACGAAGGTGTGTACATGTTTG 57.339 39.130 2.30 0.00 0.00 2.93
3057 5677 2.875933 ACGAAGGTGTGTACATGTTTGG 59.124 45.455 2.30 0.00 0.00 3.28
3058 5678 3.135225 CGAAGGTGTGTACATGTTTGGA 58.865 45.455 2.30 0.00 0.00 3.53
3059 5679 3.186409 CGAAGGTGTGTACATGTTTGGAG 59.814 47.826 2.30 0.00 0.00 3.86
3060 5680 3.140325 AGGTGTGTACATGTTTGGAGG 57.860 47.619 2.30 0.00 0.00 4.30
3061 5681 1.539827 GGTGTGTACATGTTTGGAGGC 59.460 52.381 2.30 0.00 0.00 4.70
3062 5682 1.539827 GTGTGTACATGTTTGGAGGCC 59.460 52.381 2.30 0.00 0.00 5.19
3063 5683 1.143889 TGTGTACATGTTTGGAGGCCA 59.856 47.619 5.01 0.00 0.00 5.36
3064 5684 2.224992 TGTGTACATGTTTGGAGGCCAT 60.225 45.455 5.01 0.00 31.53 4.40
3065 5685 2.164219 GTGTACATGTTTGGAGGCCATG 59.836 50.000 5.01 0.00 41.31 3.66
3066 5686 2.040947 TGTACATGTTTGGAGGCCATGA 59.959 45.455 5.01 0.00 38.56 3.07
3067 5687 1.549203 ACATGTTTGGAGGCCATGAC 58.451 50.000 5.01 0.00 38.56 3.06
3068 5688 0.452987 CATGTTTGGAGGCCATGACG 59.547 55.000 5.01 0.00 38.56 4.35
3069 5689 0.327924 ATGTTTGGAGGCCATGACGA 59.672 50.000 5.01 0.00 31.53 4.20
3070 5690 0.321564 TGTTTGGAGGCCATGACGAG 60.322 55.000 5.01 0.00 31.53 4.18
3071 5691 1.026718 GTTTGGAGGCCATGACGAGG 61.027 60.000 5.01 0.00 31.53 4.63
3072 5692 2.196997 TTTGGAGGCCATGACGAGGG 62.197 60.000 5.01 0.00 31.53 4.30
3073 5693 2.764128 GGAGGCCATGACGAGGGA 60.764 66.667 5.01 0.00 0.00 4.20
3074 5694 2.143419 GGAGGCCATGACGAGGGAT 61.143 63.158 5.01 0.00 0.00 3.85
3075 5695 0.832135 GGAGGCCATGACGAGGGATA 60.832 60.000 5.01 0.00 0.00 2.59
3076 5696 1.270907 GAGGCCATGACGAGGGATAT 58.729 55.000 5.01 0.00 0.00 1.63
3077 5697 1.625818 GAGGCCATGACGAGGGATATT 59.374 52.381 5.01 0.00 0.00 1.28
3078 5698 2.039084 GAGGCCATGACGAGGGATATTT 59.961 50.000 5.01 0.00 0.00 1.40
3079 5699 2.443255 AGGCCATGACGAGGGATATTTT 59.557 45.455 5.01 0.00 0.00 1.82
3080 5700 3.117512 AGGCCATGACGAGGGATATTTTT 60.118 43.478 5.01 0.00 0.00 1.94
3081 5701 4.104102 AGGCCATGACGAGGGATATTTTTA 59.896 41.667 5.01 0.00 0.00 1.52
3082 5702 4.215613 GGCCATGACGAGGGATATTTTTAC 59.784 45.833 0.00 0.00 0.00 2.01
3083 5703 5.063880 GCCATGACGAGGGATATTTTTACT 58.936 41.667 0.00 0.00 0.00 2.24
3084 5704 5.531287 GCCATGACGAGGGATATTTTTACTT 59.469 40.000 0.00 0.00 0.00 2.24
3085 5705 6.513393 GCCATGACGAGGGATATTTTTACTTG 60.513 42.308 0.00 0.00 0.00 3.16
3086 5706 6.017109 CCATGACGAGGGATATTTTTACTTGG 60.017 42.308 0.00 0.00 0.00 3.61
3087 5707 6.057321 TGACGAGGGATATTTTTACTTGGT 57.943 37.500 0.00 0.00 0.00 3.67
3088 5708 7.185318 TGACGAGGGATATTTTTACTTGGTA 57.815 36.000 0.00 0.00 0.00 3.25
3089 5709 7.798071 TGACGAGGGATATTTTTACTTGGTAT 58.202 34.615 0.00 0.00 0.00 2.73
3090 5710 7.713507 TGACGAGGGATATTTTTACTTGGTATG 59.286 37.037 0.00 0.00 0.00 2.39
3091 5711 6.996282 ACGAGGGATATTTTTACTTGGTATGG 59.004 38.462 0.00 0.00 0.00 2.74
3092 5712 6.430000 CGAGGGATATTTTTACTTGGTATGGG 59.570 42.308 0.00 0.00 0.00 4.00
3093 5713 7.233855 AGGGATATTTTTACTTGGTATGGGT 57.766 36.000 0.00 0.00 0.00 4.51
3094 5714 7.066781 AGGGATATTTTTACTTGGTATGGGTG 58.933 38.462 0.00 0.00 0.00 4.61
3095 5715 6.266786 GGGATATTTTTACTTGGTATGGGTGG 59.733 42.308 0.00 0.00 0.00 4.61
3096 5716 6.239204 GGATATTTTTACTTGGTATGGGTGGC 60.239 42.308 0.00 0.00 0.00 5.01
3097 5717 3.527507 TTTTACTTGGTATGGGTGGCA 57.472 42.857 0.00 0.00 0.00 4.92
3098 5718 3.527507 TTTACTTGGTATGGGTGGCAA 57.472 42.857 0.00 0.00 0.00 4.52
3099 5719 2.500392 TACTTGGTATGGGTGGCAAC 57.500 50.000 0.00 0.00 0.00 4.17
3114 5734 4.459390 TGGCAACATGATCTTTGGATTG 57.541 40.909 0.00 0.00 46.17 2.67
3115 5735 4.087907 TGGCAACATGATCTTTGGATTGA 58.912 39.130 0.00 0.00 46.17 2.57
3116 5736 4.082081 TGGCAACATGATCTTTGGATTGAC 60.082 41.667 0.00 0.00 46.17 3.18
3117 5737 4.427312 GCAACATGATCTTTGGATTGACC 58.573 43.478 0.00 0.00 39.54 4.02
3118 5738 4.678840 GCAACATGATCTTTGGATTGACCC 60.679 45.833 0.00 0.00 38.00 4.46
3119 5739 4.598036 ACATGATCTTTGGATTGACCCT 57.402 40.909 0.00 0.00 38.00 4.34
3120 5740 4.530875 ACATGATCTTTGGATTGACCCTC 58.469 43.478 0.00 0.00 38.00 4.30
3121 5741 4.229123 ACATGATCTTTGGATTGACCCTCT 59.771 41.667 0.00 0.00 38.00 3.69
3122 5742 4.934797 TGATCTTTGGATTGACCCTCTT 57.065 40.909 0.00 0.00 38.00 2.85
3123 5743 6.069440 ACATGATCTTTGGATTGACCCTCTTA 60.069 38.462 0.00 0.00 38.00 2.10
3124 5744 5.745227 TGATCTTTGGATTGACCCTCTTAC 58.255 41.667 0.00 0.00 38.00 2.34
3125 5745 4.569719 TCTTTGGATTGACCCTCTTACC 57.430 45.455 0.00 0.00 38.00 2.85
3126 5746 3.913799 TCTTTGGATTGACCCTCTTACCA 59.086 43.478 0.00 0.00 38.00 3.25
3127 5747 3.713826 TTGGATTGACCCTCTTACCAC 57.286 47.619 0.00 0.00 38.00 4.16
3128 5748 2.915869 TGGATTGACCCTCTTACCACT 58.084 47.619 0.00 0.00 38.00 4.00
3129 5749 3.256704 TGGATTGACCCTCTTACCACTT 58.743 45.455 0.00 0.00 38.00 3.16
3130 5750 4.431378 TGGATTGACCCTCTTACCACTTA 58.569 43.478 0.00 0.00 38.00 2.24
3131 5751 4.469945 TGGATTGACCCTCTTACCACTTAG 59.530 45.833 0.00 0.00 38.00 2.18
3132 5752 4.141688 GGATTGACCCTCTTACCACTTAGG 60.142 50.000 0.00 0.00 45.67 2.69
3133 5753 2.185387 TGACCCTCTTACCACTTAGGC 58.815 52.381 0.00 0.00 43.14 3.93
3134 5754 1.136500 GACCCTCTTACCACTTAGGCG 59.864 57.143 0.00 0.00 43.14 5.52
3135 5755 0.179081 CCCTCTTACCACTTAGGCGC 60.179 60.000 0.00 0.00 43.14 6.53
3136 5756 0.824759 CCTCTTACCACTTAGGCGCT 59.175 55.000 7.64 0.00 43.14 5.92
3137 5757 2.029623 CCTCTTACCACTTAGGCGCTA 58.970 52.381 7.64 0.00 43.14 4.26
3138 5758 2.034812 CCTCTTACCACTTAGGCGCTAG 59.965 54.545 7.64 5.21 43.14 3.42
3139 5759 1.407979 TCTTACCACTTAGGCGCTAGC 59.592 52.381 7.64 4.06 43.14 3.42
3149 5769 2.573869 GCGCTAGCAGTCTCCACA 59.426 61.111 16.45 0.00 44.35 4.17
3150 5770 1.142748 GCGCTAGCAGTCTCCACAT 59.857 57.895 16.45 0.00 44.35 3.21
3151 5771 1.150567 GCGCTAGCAGTCTCCACATG 61.151 60.000 16.45 0.00 44.35 3.21
3152 5772 0.457443 CGCTAGCAGTCTCCACATGA 59.543 55.000 16.45 0.00 0.00 3.07
3153 5773 1.068281 CGCTAGCAGTCTCCACATGAT 59.932 52.381 16.45 0.00 0.00 2.45
3154 5774 2.482664 CGCTAGCAGTCTCCACATGATT 60.483 50.000 16.45 0.00 0.00 2.57
3155 5775 3.243535 CGCTAGCAGTCTCCACATGATTA 60.244 47.826 16.45 0.00 0.00 1.75
3156 5776 4.054671 GCTAGCAGTCTCCACATGATTAC 58.945 47.826 10.63 0.00 0.00 1.89
3157 5777 4.202202 GCTAGCAGTCTCCACATGATTACT 60.202 45.833 10.63 0.00 0.00 2.24
3158 5778 4.833478 AGCAGTCTCCACATGATTACTT 57.167 40.909 0.00 0.00 0.00 2.24
3159 5779 4.511527 AGCAGTCTCCACATGATTACTTG 58.488 43.478 0.00 0.00 0.00 3.16
3160 5780 4.019860 AGCAGTCTCCACATGATTACTTGT 60.020 41.667 0.00 0.00 35.30 3.16
3161 5781 5.187772 AGCAGTCTCCACATGATTACTTGTA 59.812 40.000 0.00 0.00 33.96 2.41
3162 5782 6.051717 GCAGTCTCCACATGATTACTTGTAT 58.948 40.000 0.00 0.00 33.96 2.29
3163 5783 6.540189 GCAGTCTCCACATGATTACTTGTATT 59.460 38.462 0.00 0.00 33.96 1.89
3164 5784 7.066284 GCAGTCTCCACATGATTACTTGTATTT 59.934 37.037 0.00 0.00 33.96 1.40
3165 5785 8.950210 CAGTCTCCACATGATTACTTGTATTTT 58.050 33.333 0.00 0.00 33.96 1.82
3166 5786 8.950210 AGTCTCCACATGATTACTTGTATTTTG 58.050 33.333 0.00 0.00 33.96 2.44
3167 5787 7.698130 GTCTCCACATGATTACTTGTATTTTGC 59.302 37.037 0.00 0.00 33.96 3.68
3168 5788 7.611467 TCTCCACATGATTACTTGTATTTTGCT 59.389 33.333 0.00 0.00 33.96 3.91
3169 5789 7.761409 TCCACATGATTACTTGTATTTTGCTC 58.239 34.615 0.00 0.00 33.96 4.26
3170 5790 7.611467 TCCACATGATTACTTGTATTTTGCTCT 59.389 33.333 0.00 0.00 33.96 4.09
3171 5791 8.246180 CCACATGATTACTTGTATTTTGCTCTT 58.754 33.333 0.00 0.00 33.96 2.85
3172 5792 9.282247 CACATGATTACTTGTATTTTGCTCTTC 57.718 33.333 0.00 0.00 33.96 2.87
3173 5793 9.236006 ACATGATTACTTGTATTTTGCTCTTCT 57.764 29.630 0.00 0.00 33.63 2.85
3176 5796 9.507329 TGATTACTTGTATTTTGCTCTTCTTCT 57.493 29.630 0.00 0.00 0.00 2.85
3202 5822 7.922505 TTTTGAAACGTGAACTTGATTATGG 57.077 32.000 0.00 0.00 0.00 2.74
3203 5823 6.627395 TTGAAACGTGAACTTGATTATGGT 57.373 33.333 0.00 0.00 0.00 3.55
3204 5824 6.627395 TGAAACGTGAACTTGATTATGGTT 57.373 33.333 0.00 0.00 0.00 3.67
3205 5825 6.434596 TGAAACGTGAACTTGATTATGGTTG 58.565 36.000 0.00 0.00 0.00 3.77
3206 5826 4.419522 ACGTGAACTTGATTATGGTTGC 57.580 40.909 0.00 0.00 0.00 4.17
3207 5827 3.120338 ACGTGAACTTGATTATGGTTGCG 60.120 43.478 0.00 0.00 0.00 4.85
3208 5828 3.120338 CGTGAACTTGATTATGGTTGCGT 60.120 43.478 0.00 0.00 0.00 5.24
3209 5829 4.092237 CGTGAACTTGATTATGGTTGCGTA 59.908 41.667 0.00 0.00 0.00 4.42
3210 5830 5.321516 GTGAACTTGATTATGGTTGCGTAC 58.678 41.667 0.00 0.00 0.00 3.67
3211 5831 4.998033 TGAACTTGATTATGGTTGCGTACA 59.002 37.500 0.00 0.00 0.00 2.90
3212 5832 5.645929 TGAACTTGATTATGGTTGCGTACAT 59.354 36.000 0.00 0.00 0.00 2.29
3213 5833 6.150307 TGAACTTGATTATGGTTGCGTACATT 59.850 34.615 0.00 0.00 0.00 2.71
3214 5834 6.509418 ACTTGATTATGGTTGCGTACATTT 57.491 33.333 0.00 0.00 0.00 2.32
3215 5835 6.919721 ACTTGATTATGGTTGCGTACATTTT 58.080 32.000 0.00 0.00 0.00 1.82
3216 5836 8.046294 ACTTGATTATGGTTGCGTACATTTTA 57.954 30.769 0.00 0.00 0.00 1.52
3217 5837 8.516234 ACTTGATTATGGTTGCGTACATTTTAA 58.484 29.630 0.00 0.00 0.00 1.52
3218 5838 9.515020 CTTGATTATGGTTGCGTACATTTTAAT 57.485 29.630 0.00 0.00 0.00 1.40
3219 5839 9.862371 TTGATTATGGTTGCGTACATTTTAATT 57.138 25.926 0.00 0.00 0.00 1.40
3223 5843 7.692908 ATGGTTGCGTACATTTTAATTATGC 57.307 32.000 0.00 0.00 0.00 3.14
3224 5844 6.621613 TGGTTGCGTACATTTTAATTATGCA 58.378 32.000 0.00 0.00 36.24 3.96
3225 5845 6.749578 TGGTTGCGTACATTTTAATTATGCAG 59.250 34.615 0.00 0.00 38.60 4.41
3226 5846 6.970043 GGTTGCGTACATTTTAATTATGCAGA 59.030 34.615 0.00 0.00 38.60 4.26
3227 5847 7.165812 GGTTGCGTACATTTTAATTATGCAGAG 59.834 37.037 0.00 0.00 38.60 3.35
3228 5848 6.724263 TGCGTACATTTTAATTATGCAGAGG 58.276 36.000 0.00 0.00 33.74 3.69
3229 5849 5.625311 GCGTACATTTTAATTATGCAGAGGC 59.375 40.000 0.00 0.00 41.68 4.70
3230 5850 6.513393 GCGTACATTTTAATTATGCAGAGGCT 60.513 38.462 0.00 0.00 41.91 4.58
3231 5851 7.417612 CGTACATTTTAATTATGCAGAGGCTT 58.582 34.615 0.00 0.00 41.91 4.35
3232 5852 7.376866 CGTACATTTTAATTATGCAGAGGCTTG 59.623 37.037 0.00 0.00 41.91 4.01
3233 5853 6.576185 ACATTTTAATTATGCAGAGGCTTGG 58.424 36.000 0.00 0.00 41.91 3.61
3234 5854 6.155049 ACATTTTAATTATGCAGAGGCTTGGT 59.845 34.615 0.00 0.00 41.91 3.67
3235 5855 5.581126 TTTAATTATGCAGAGGCTTGGTG 57.419 39.130 0.00 0.00 41.91 4.17
3236 5856 2.814805 ATTATGCAGAGGCTTGGTGT 57.185 45.000 0.00 0.00 41.91 4.16
3237 5857 3.931907 ATTATGCAGAGGCTTGGTGTA 57.068 42.857 0.00 0.00 41.91 2.90
3238 5858 3.712016 TTATGCAGAGGCTTGGTGTAA 57.288 42.857 0.00 0.00 41.91 2.41
3239 5859 2.814805 ATGCAGAGGCTTGGTGTAAT 57.185 45.000 0.00 0.00 41.91 1.89
3240 5860 1.825090 TGCAGAGGCTTGGTGTAATG 58.175 50.000 0.00 0.00 41.91 1.90
3241 5861 0.453390 GCAGAGGCTTGGTGTAATGC 59.547 55.000 0.00 0.00 36.96 3.56
3242 5862 1.952367 GCAGAGGCTTGGTGTAATGCT 60.952 52.381 0.00 0.00 36.96 3.79
3243 5863 2.440409 CAGAGGCTTGGTGTAATGCTT 58.560 47.619 0.00 0.00 0.00 3.91
3244 5864 3.609853 CAGAGGCTTGGTGTAATGCTTA 58.390 45.455 0.00 0.00 0.00 3.09
3245 5865 4.009675 CAGAGGCTTGGTGTAATGCTTAA 58.990 43.478 0.00 0.00 0.00 1.85
3246 5866 4.458989 CAGAGGCTTGGTGTAATGCTTAAA 59.541 41.667 0.00 0.00 0.00 1.52
3247 5867 4.459337 AGAGGCTTGGTGTAATGCTTAAAC 59.541 41.667 0.00 0.00 0.00 2.01
3248 5868 3.509967 AGGCTTGGTGTAATGCTTAAACC 59.490 43.478 7.83 7.83 42.79 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.168788 GGTAGTAGTACGTGCGTGCA 59.831 55.000 14.44 0.00 33.14 4.57
1 2 0.524180 GGGTAGTAGTACGTGCGTGC 60.524 60.000 7.55 6.08 0.00 5.34
2 3 0.247814 CGGGTAGTAGTACGTGCGTG 60.248 60.000 7.55 0.00 0.00 5.34
3 4 1.982073 GCGGGTAGTAGTACGTGCGT 61.982 60.000 0.00 2.05 0.00 5.24
4 5 1.297893 GCGGGTAGTAGTACGTGCG 60.298 63.158 0.00 0.00 0.00 5.34
5 6 0.171007 TTGCGGGTAGTAGTACGTGC 59.829 55.000 13.18 13.18 33.03 5.34
6 7 1.796617 GCTTGCGGGTAGTAGTACGTG 60.797 57.143 0.00 0.00 0.00 4.49
13 14 1.914263 TGGGTGCTTGCGGGTAGTA 60.914 57.895 0.00 0.00 0.00 1.82
29 30 0.652592 CGATTTTCTAGCTGCCGTGG 59.347 55.000 0.00 0.00 0.00 4.94
47 48 3.803231 ACTACTACTACAGTGAGCGATCG 59.197 47.826 11.69 11.69 38.24 3.69
50 51 4.981054 CGATACTACTACTACAGTGAGCGA 59.019 45.833 0.00 0.00 38.24 4.93
51 52 4.744137 ACGATACTACTACTACAGTGAGCG 59.256 45.833 0.00 0.00 38.24 5.03
52 53 5.523188 ACACGATACTACTACTACAGTGAGC 59.477 44.000 0.00 0.00 38.24 4.26
53 54 6.509837 GCACACGATACTACTACTACAGTGAG 60.510 46.154 0.00 0.00 38.24 3.51
72 73 1.717791 AATGCATGGATCGGCACACG 61.718 55.000 0.00 0.00 43.75 4.49
73 74 0.248743 CAATGCATGGATCGGCACAC 60.249 55.000 0.00 0.00 43.75 3.82
75 76 0.457035 AACAATGCATGGATCGGCAC 59.543 50.000 8.45 0.00 43.75 5.01
76 77 1.184431 AAACAATGCATGGATCGGCA 58.816 45.000 8.45 7.63 45.23 5.69
77 78 2.298411 AAAACAATGCATGGATCGGC 57.702 45.000 8.45 0.00 0.00 5.54
78 79 3.587923 ACAAAAACAATGCATGGATCGG 58.412 40.909 8.45 0.00 0.00 4.18
191 218 0.672401 TCGGGCGACTGAATCAAACC 60.672 55.000 0.00 0.00 44.59 3.27
280 312 3.955471 CAACCACTGGATTATGGACAGT 58.045 45.455 0.71 0.00 45.62 3.55
293 325 3.775202 CGATCTCTAGTTCCAACCACTG 58.225 50.000 0.00 0.00 0.00 3.66
294 326 2.166664 GCGATCTCTAGTTCCAACCACT 59.833 50.000 0.00 0.00 0.00 4.00
295 327 2.166664 AGCGATCTCTAGTTCCAACCAC 59.833 50.000 0.00 0.00 0.00 4.16
314 346 3.922893 GAGCGCACGCATCTGAGC 61.923 66.667 18.24 0.00 44.88 4.26
315 347 2.341807 TAGGAGCGCACGCATCTGAG 62.342 60.000 18.24 0.00 44.88 3.35
316 348 1.944234 TTAGGAGCGCACGCATCTGA 61.944 55.000 18.24 7.78 44.88 3.27
317 349 0.877649 ATTAGGAGCGCACGCATCTG 60.878 55.000 18.24 0.00 44.88 2.90
318 350 0.179073 AATTAGGAGCGCACGCATCT 60.179 50.000 18.24 15.20 44.88 2.90
319 351 0.041839 CAATTAGGAGCGCACGCATC 60.042 55.000 18.24 11.22 44.88 3.91
324 356 1.766143 CGAGGCAATTAGGAGCGCAC 61.766 60.000 11.47 1.97 0.00 5.34
355 387 1.810151 GCAAATTACAAGGCGAGGTCA 59.190 47.619 0.00 0.00 0.00 4.02
356 388 1.810151 TGCAAATTACAAGGCGAGGTC 59.190 47.619 0.00 0.00 0.00 3.85
357 389 1.539827 GTGCAAATTACAAGGCGAGGT 59.460 47.619 0.00 0.00 0.00 3.85
358 390 1.135402 GGTGCAAATTACAAGGCGAGG 60.135 52.381 0.00 0.00 0.00 4.63
364 396 2.162809 GGGTACCGGTGCAAATTACAAG 59.837 50.000 24.62 0.00 40.86 3.16
391 423 2.435805 AGAGTGATGATGGTTACGGCAT 59.564 45.455 0.00 0.00 0.00 4.40
393 425 2.159099 TCAGAGTGATGATGGTTACGGC 60.159 50.000 0.00 0.00 0.00 5.68
394 426 3.801114 TCAGAGTGATGATGGTTACGG 57.199 47.619 0.00 0.00 0.00 4.02
395 427 6.273071 TGTATTCAGAGTGATGATGGTTACG 58.727 40.000 0.00 0.00 0.00 3.18
396 428 7.268586 ACTGTATTCAGAGTGATGATGGTTAC 58.731 38.462 6.32 0.00 43.76 2.50
397 429 7.423844 ACTGTATTCAGAGTGATGATGGTTA 57.576 36.000 6.32 0.00 43.76 2.85
398 430 6.305272 ACTGTATTCAGAGTGATGATGGTT 57.695 37.500 6.32 0.00 43.76 3.67
399 431 5.946942 ACTGTATTCAGAGTGATGATGGT 57.053 39.130 6.32 0.00 43.76 3.55
400 432 6.266330 TCCTACTGTATTCAGAGTGATGATGG 59.734 42.308 6.32 0.00 43.76 3.51
406 439 4.600062 TGCTCCTACTGTATTCAGAGTGA 58.400 43.478 6.32 0.00 43.76 3.41
412 445 9.595823 GTAAAAATACTGCTCCTACTGTATTCA 57.404 33.333 7.10 0.00 41.20 2.57
425 465 7.172532 TCGATTTGACAGTGTAAAAATACTGCT 59.827 33.333 9.90 0.00 46.27 4.24
439 479 3.678072 CGTACACCATTCGATTTGACAGT 59.322 43.478 0.00 0.00 0.00 3.55
440 480 3.924073 TCGTACACCATTCGATTTGACAG 59.076 43.478 0.00 0.00 0.00 3.51
441 481 3.915536 TCGTACACCATTCGATTTGACA 58.084 40.909 0.00 0.00 0.00 3.58
456 496 1.134310 TCCATCTAGCCGTCTCGTACA 60.134 52.381 0.00 0.00 0.00 2.90
457 497 1.532007 CTCCATCTAGCCGTCTCGTAC 59.468 57.143 0.00 0.00 0.00 3.67
458 498 1.140452 ACTCCATCTAGCCGTCTCGTA 59.860 52.381 0.00 0.00 0.00 3.43
459 499 0.107116 ACTCCATCTAGCCGTCTCGT 60.107 55.000 0.00 0.00 0.00 4.18
460 500 1.801771 CTACTCCATCTAGCCGTCTCG 59.198 57.143 0.00 0.00 0.00 4.04
465 505 4.223556 TCTATCCTACTCCATCTAGCCG 57.776 50.000 0.00 0.00 0.00 5.52
477 517 5.450453 TGGCTATCAGGCTATCTATCCTAC 58.550 45.833 1.24 0.00 41.96 3.18
492 532 5.683681 TCTTCTTTACATGCATGGCTATCA 58.316 37.500 29.41 9.30 0.00 2.15
516 556 3.302347 CTCCGCTCCTCCACGCTTT 62.302 63.158 0.00 0.00 0.00 3.51
544 584 2.820037 GCTTTCGCCTTCCCTCCG 60.820 66.667 0.00 0.00 0.00 4.63
546 586 0.958822 TTTTGCTTTCGCCTTCCCTC 59.041 50.000 0.00 0.00 34.43 4.30
547 587 0.961753 CTTTTGCTTTCGCCTTCCCT 59.038 50.000 0.00 0.00 34.43 4.20
548 588 0.958822 TCTTTTGCTTTCGCCTTCCC 59.041 50.000 0.00 0.00 34.43 3.97
600 640 2.433664 CGGACAAGTACCGCCACC 60.434 66.667 0.00 0.00 43.74 4.61
719 779 1.445238 GCTCACTGTCTGTCTCGGC 60.445 63.158 0.00 0.00 0.00 5.54
720 780 0.315251 TTGCTCACTGTCTGTCTCGG 59.685 55.000 0.00 0.00 0.00 4.63
758 822 4.752879 TACGTCCCGGCAAGCAGC 62.753 66.667 0.00 0.00 44.65 5.25
759 823 2.813908 GTACGTCCCGGCAAGCAG 60.814 66.667 0.00 0.00 0.00 4.24
760 824 4.728102 CGTACGTCCCGGCAAGCA 62.728 66.667 7.22 0.00 0.00 3.91
762 826 4.728102 TGCGTACGTCCCGGCAAG 62.728 66.667 17.90 0.00 31.50 4.01
766 830 4.789075 CCTGTGCGTACGTCCCGG 62.789 72.222 17.90 9.46 0.00 5.73
779 843 3.144506 CTGAGTCTTGTTTGCATCCTGT 58.855 45.455 0.00 0.00 0.00 4.00
927 1015 2.492449 TTCACTCCGCTGCTTCTCGG 62.492 60.000 0.00 0.00 46.52 4.63
940 1028 0.109039 GACCTCGCCTCACTTCACTC 60.109 60.000 0.00 0.00 0.00 3.51
943 1031 1.666011 GTGACCTCGCCTCACTTCA 59.334 57.895 0.00 0.00 35.99 3.02
958 1046 1.836391 CTTGGTGGTGGTCTGGTGA 59.164 57.895 0.00 0.00 0.00 4.02
966 1054 2.643551 CCTGTATAAGCTTGGTGGTGG 58.356 52.381 9.86 0.59 0.00 4.61
967 1055 2.643551 CCCTGTATAAGCTTGGTGGTG 58.356 52.381 9.86 0.00 0.00 4.17
968 1056 1.064685 GCCCTGTATAAGCTTGGTGGT 60.065 52.381 9.86 0.00 0.00 4.16
970 1058 1.134521 TCGCCCTGTATAAGCTTGGTG 60.135 52.381 9.86 7.35 0.00 4.17
971 1059 1.139058 CTCGCCCTGTATAAGCTTGGT 59.861 52.381 9.86 0.00 0.00 3.67
972 1060 1.541233 CCTCGCCCTGTATAAGCTTGG 60.541 57.143 9.86 0.99 0.00 3.61
974 1062 0.759346 CCCTCGCCCTGTATAAGCTT 59.241 55.000 3.48 3.48 0.00 3.74
976 1064 0.468648 AACCCTCGCCCTGTATAAGC 59.531 55.000 0.00 0.00 0.00 3.09
977 1065 1.760613 TCAACCCTCGCCCTGTATAAG 59.239 52.381 0.00 0.00 0.00 1.73
978 1066 1.483415 GTCAACCCTCGCCCTGTATAA 59.517 52.381 0.00 0.00 0.00 0.98
979 1067 1.117150 GTCAACCCTCGCCCTGTATA 58.883 55.000 0.00 0.00 0.00 1.47
980 1068 1.905512 GTCAACCCTCGCCCTGTAT 59.094 57.895 0.00 0.00 0.00 2.29
981 1069 2.642254 CGTCAACCCTCGCCCTGTA 61.642 63.158 0.00 0.00 0.00 2.74
982 1070 4.003788 CGTCAACCCTCGCCCTGT 62.004 66.667 0.00 0.00 0.00 4.00
983 1071 3.019003 ATCGTCAACCCTCGCCCTG 62.019 63.158 0.00 0.00 0.00 4.45
984 1072 2.683933 ATCGTCAACCCTCGCCCT 60.684 61.111 0.00 0.00 0.00 5.19
985 1073 2.511600 CATCGTCAACCCTCGCCC 60.512 66.667 0.00 0.00 0.00 6.13
994 1082 2.125552 CCTGCTCGCCATCGTCAA 60.126 61.111 0.00 0.00 36.96 3.18
1079 1170 0.903454 GAACTCGAACTCCCTCCCCA 60.903 60.000 0.00 0.00 0.00 4.96
1579 1673 2.032071 CTTTCCGCCCAGACCGTT 59.968 61.111 0.00 0.00 0.00 4.44
1585 1679 2.245438 GAGAGGTCCTTTCCGCCCAG 62.245 65.000 0.00 0.00 0.00 4.45
1607 1701 1.160329 GCTATGGCCATGTCCGTGAC 61.160 60.000 29.04 4.58 0.00 3.67
1608 1702 1.146041 GCTATGGCCATGTCCGTGA 59.854 57.895 29.04 5.10 0.00 4.35
1609 1703 3.736483 GCTATGGCCATGTCCGTG 58.264 61.111 29.04 11.57 0.00 4.94
1621 1715 1.829533 GGTGGTGGCCATGGCTATG 60.830 63.158 34.70 2.48 41.60 2.23
1622 1716 2.603008 GGTGGTGGCCATGGCTAT 59.397 61.111 34.70 0.00 41.60 2.97
1623 1717 3.738481 GGGTGGTGGCCATGGCTA 61.738 66.667 34.70 28.21 41.60 3.93
1646 1752 0.395312 GAACGGGTTCTTCCTCCACA 59.605 55.000 4.35 0.00 36.69 4.17
1668 1774 1.538512 CACCTGTTGCTTCTGATGTGG 59.461 52.381 0.00 0.00 0.00 4.17
2121 2236 2.048222 CATCACGGCACCGACAGT 60.048 61.111 17.40 0.00 42.83 3.55
2144 2259 7.751768 TTTCATACACCATTGTACACATTCA 57.248 32.000 0.00 0.00 41.12 2.57
2195 2310 1.209261 TGACACCAGCACAAGTCTCAA 59.791 47.619 0.00 0.00 32.41 3.02
2199 2314 0.529773 TCGTGACACCAGCACAAGTC 60.530 55.000 0.00 0.00 36.06 3.01
2207 2322 0.867746 CAACACCATCGTGACACCAG 59.132 55.000 0.00 0.00 43.14 4.00
2242 2357 5.491070 TCAGATGTGGTTTAGTGATTCAGG 58.509 41.667 0.00 0.00 0.00 3.86
2299 2436 7.232534 ACAATTACCATACTGCAAGGAGAAAAA 59.767 33.333 0.00 0.00 39.30 1.94
2304 2444 7.415206 GGTTAACAATTACCATACTGCAAGGAG 60.415 40.741 8.10 0.00 34.28 3.69
2305 2445 6.376018 GGTTAACAATTACCATACTGCAAGGA 59.624 38.462 8.10 0.00 34.28 3.36
2316 2456 6.127814 TGTTGTTTCGTGGTTAACAATTACCA 60.128 34.615 8.10 0.00 43.65 3.25
2317 2457 6.264088 TGTTGTTTCGTGGTTAACAATTACC 58.736 36.000 8.10 0.00 43.65 2.85
2318 2458 7.858879 AGATGTTGTTTCGTGGTTAACAATTAC 59.141 33.333 8.10 0.21 43.65 1.89
2319 2459 7.858382 CAGATGTTGTTTCGTGGTTAACAATTA 59.142 33.333 8.10 0.00 43.65 1.40
2320 2460 6.695278 CAGATGTTGTTTCGTGGTTAACAATT 59.305 34.615 8.10 0.00 43.65 2.32
2321 2461 6.183360 ACAGATGTTGTTTCGTGGTTAACAAT 60.183 34.615 8.10 0.00 43.65 2.71
2322 2462 5.124138 ACAGATGTTGTTTCGTGGTTAACAA 59.876 36.000 8.10 0.00 40.76 2.83
2333 2473 9.081091 GCACTTGCACTAAACAGATGTTGTTTC 62.081 40.741 8.39 0.00 46.97 2.78
2490 2635 1.198759 AAGACTTCTGGGGGCGCTAA 61.199 55.000 7.64 0.00 0.00 3.09
2492 2637 1.612442 TAAGACTTCTGGGGGCGCT 60.612 57.895 7.64 0.00 0.00 5.92
2493 2638 1.449778 GTAAGACTTCTGGGGGCGC 60.450 63.158 0.00 0.00 0.00 6.53
2494 2639 1.153628 CGTAAGACTTCTGGGGGCG 60.154 63.158 0.00 0.00 43.02 6.13
2495 2640 0.175989 CTCGTAAGACTTCTGGGGGC 59.824 60.000 0.00 0.00 45.01 5.80
2496 2641 1.204941 CACTCGTAAGACTTCTGGGGG 59.795 57.143 0.00 0.00 45.01 5.40
2535 2680 4.545678 TGCAAGCAGTGGGGAATAATAAT 58.454 39.130 0.00 0.00 0.00 1.28
2536 2681 3.974719 TGCAAGCAGTGGGGAATAATAA 58.025 40.909 0.00 0.00 0.00 1.40
2537 2682 3.660970 TGCAAGCAGTGGGGAATAATA 57.339 42.857 0.00 0.00 0.00 0.98
2538 2683 2.530460 TGCAAGCAGTGGGGAATAAT 57.470 45.000 0.00 0.00 0.00 1.28
2539 2684 2.530460 ATGCAAGCAGTGGGGAATAA 57.470 45.000 0.00 0.00 0.00 1.40
2550 2695 2.183478 TCTCCGAAGAAATGCAAGCA 57.817 45.000 0.00 0.00 0.00 3.91
2635 5226 5.437289 TCAAATGATTCTGTGAAAAGCGT 57.563 34.783 0.00 0.00 0.00 5.07
2723 5325 2.492012 CTATGATGCTCTTGTCAGGCC 58.508 52.381 0.00 0.00 0.00 5.19
2810 5418 0.532862 GTATGATCCACCGTGGCCTG 60.533 60.000 13.19 0.00 37.47 4.85
2830 5438 4.392754 CGCACATGCATGGTGTATATGTAT 59.607 41.667 29.41 1.84 42.21 2.29
2837 5445 2.748843 CGCGCACATGCATGGTGTA 61.749 57.895 29.41 0.00 42.21 2.90
2838 5446 4.105733 CGCGCACATGCATGGTGT 62.106 61.111 29.41 8.75 42.21 4.16
2839 5447 2.799488 TTTCGCGCACATGCATGGTG 62.799 55.000 29.41 23.42 42.21 4.17
2841 5449 1.870458 CTTTCGCGCACATGCATGG 60.870 57.895 29.41 19.00 42.21 3.66
2869 5485 9.722184 TCTGCTCTCGTAGTGTAGTATTATTAT 57.278 33.333 0.00 0.00 0.00 1.28
2870 5486 9.205719 CTCTGCTCTCGTAGTGTAGTATTATTA 57.794 37.037 0.00 0.00 0.00 0.98
2871 5487 7.716123 ACTCTGCTCTCGTAGTGTAGTATTATT 59.284 37.037 0.00 0.00 29.72 1.40
2872 5488 7.218614 ACTCTGCTCTCGTAGTGTAGTATTAT 58.781 38.462 0.00 0.00 29.72 1.28
2873 5489 6.580788 ACTCTGCTCTCGTAGTGTAGTATTA 58.419 40.000 0.00 0.00 29.72 0.98
2874 5490 5.430007 ACTCTGCTCTCGTAGTGTAGTATT 58.570 41.667 0.00 0.00 29.72 1.89
2875 5491 5.026038 ACTCTGCTCTCGTAGTGTAGTAT 57.974 43.478 0.00 0.00 29.72 2.12
2876 5492 4.468765 ACTCTGCTCTCGTAGTGTAGTA 57.531 45.455 0.00 0.00 29.72 1.82
2877 5493 3.337694 ACTCTGCTCTCGTAGTGTAGT 57.662 47.619 0.00 0.00 29.72 2.73
2878 5494 5.294356 AGATACTCTGCTCTCGTAGTGTAG 58.706 45.833 0.00 0.00 36.04 2.74
2951 5567 5.123936 GGATTAAATCGAGCCCTTTGTAGT 58.876 41.667 0.00 0.00 0.00 2.73
2964 5580 5.056480 TGCTGATGTAGTGGGATTAAATCG 58.944 41.667 0.00 0.00 0.00 3.34
2986 5606 8.095937 TGTAGAGACGACCACTAATACATATG 57.904 38.462 0.00 0.00 0.00 1.78
3024 5644 9.926158 TGTACACACCTTCGTAAATATTCTTAA 57.074 29.630 0.00 0.00 0.00 1.85
3026 5646 8.879759 CATGTACACACCTTCGTAAATATTCTT 58.120 33.333 0.00 0.00 0.00 2.52
3027 5647 8.038944 ACATGTACACACCTTCGTAAATATTCT 58.961 33.333 0.00 0.00 0.00 2.40
3028 5648 8.193250 ACATGTACACACCTTCGTAAATATTC 57.807 34.615 0.00 0.00 0.00 1.75
3029 5649 8.556213 AACATGTACACACCTTCGTAAATATT 57.444 30.769 0.00 0.00 0.00 1.28
3030 5650 8.447833 CAAACATGTACACACCTTCGTAAATAT 58.552 33.333 0.00 0.00 0.00 1.28
3031 5651 7.095144 CCAAACATGTACACACCTTCGTAAATA 60.095 37.037 0.00 0.00 0.00 1.40
3032 5652 6.293735 CCAAACATGTACACACCTTCGTAAAT 60.294 38.462 0.00 0.00 0.00 1.40
3033 5653 5.007823 CCAAACATGTACACACCTTCGTAAA 59.992 40.000 0.00 0.00 0.00 2.01
3034 5654 4.512198 CCAAACATGTACACACCTTCGTAA 59.488 41.667 0.00 0.00 0.00 3.18
3035 5655 4.059511 CCAAACATGTACACACCTTCGTA 58.940 43.478 0.00 0.00 0.00 3.43
3036 5656 2.875933 CCAAACATGTACACACCTTCGT 59.124 45.455 0.00 0.00 0.00 3.85
3037 5657 3.135225 TCCAAACATGTACACACCTTCG 58.865 45.455 0.00 0.00 0.00 3.79
3038 5658 3.502211 CCTCCAAACATGTACACACCTTC 59.498 47.826 0.00 0.00 0.00 3.46
3039 5659 3.486383 CCTCCAAACATGTACACACCTT 58.514 45.455 0.00 0.00 0.00 3.50
3040 5660 2.814097 GCCTCCAAACATGTACACACCT 60.814 50.000 0.00 0.00 0.00 4.00
3041 5661 1.539827 GCCTCCAAACATGTACACACC 59.460 52.381 0.00 0.00 0.00 4.16
3042 5662 1.539827 GGCCTCCAAACATGTACACAC 59.460 52.381 0.00 0.00 0.00 3.82
3043 5663 1.143889 TGGCCTCCAAACATGTACACA 59.856 47.619 3.32 0.00 0.00 3.72
3044 5664 1.904287 TGGCCTCCAAACATGTACAC 58.096 50.000 3.32 0.00 0.00 2.90
3045 5665 2.040947 TCATGGCCTCCAAACATGTACA 59.959 45.455 3.32 0.00 41.91 2.90
3046 5666 2.423538 GTCATGGCCTCCAAACATGTAC 59.576 50.000 3.32 0.00 41.91 2.90
3047 5667 2.722094 GTCATGGCCTCCAAACATGTA 58.278 47.619 3.32 0.00 41.91 2.29
3048 5668 1.549203 GTCATGGCCTCCAAACATGT 58.451 50.000 3.32 0.00 41.91 3.21
3049 5669 0.452987 CGTCATGGCCTCCAAACATG 59.547 55.000 3.32 0.00 42.44 3.21
3050 5670 0.327924 TCGTCATGGCCTCCAAACAT 59.672 50.000 3.32 0.00 36.95 2.71
3051 5671 0.321564 CTCGTCATGGCCTCCAAACA 60.322 55.000 3.32 0.00 36.95 2.83
3052 5672 1.026718 CCTCGTCATGGCCTCCAAAC 61.027 60.000 3.32 0.00 36.95 2.93
3053 5673 1.299648 CCTCGTCATGGCCTCCAAA 59.700 57.895 3.32 0.00 36.95 3.28
3054 5674 2.669133 CCCTCGTCATGGCCTCCAA 61.669 63.158 3.32 0.00 36.95 3.53
3055 5675 2.896677 ATCCCTCGTCATGGCCTCCA 62.897 60.000 3.32 0.00 38.19 3.86
3056 5676 0.832135 TATCCCTCGTCATGGCCTCC 60.832 60.000 3.32 0.00 0.00 4.30
3057 5677 1.270907 ATATCCCTCGTCATGGCCTC 58.729 55.000 3.32 0.00 0.00 4.70
3058 5678 1.734655 AATATCCCTCGTCATGGCCT 58.265 50.000 3.32 0.00 0.00 5.19
3059 5679 2.568623 AAATATCCCTCGTCATGGCC 57.431 50.000 0.00 0.00 0.00 5.36
3060 5680 5.063880 AGTAAAAATATCCCTCGTCATGGC 58.936 41.667 0.00 0.00 0.00 4.40
3061 5681 6.017109 CCAAGTAAAAATATCCCTCGTCATGG 60.017 42.308 0.00 0.00 0.00 3.66
3062 5682 6.542370 ACCAAGTAAAAATATCCCTCGTCATG 59.458 38.462 0.00 0.00 0.00 3.07
3063 5683 6.659824 ACCAAGTAAAAATATCCCTCGTCAT 58.340 36.000 0.00 0.00 0.00 3.06
3064 5684 6.057321 ACCAAGTAAAAATATCCCTCGTCA 57.943 37.500 0.00 0.00 0.00 4.35
3065 5685 7.172703 CCATACCAAGTAAAAATATCCCTCGTC 59.827 40.741 0.00 0.00 0.00 4.20
3066 5686 6.996282 CCATACCAAGTAAAAATATCCCTCGT 59.004 38.462 0.00 0.00 0.00 4.18
3067 5687 6.430000 CCCATACCAAGTAAAAATATCCCTCG 59.570 42.308 0.00 0.00 0.00 4.63
3068 5688 7.230712 CACCCATACCAAGTAAAAATATCCCTC 59.769 40.741 0.00 0.00 0.00 4.30
3069 5689 7.066781 CACCCATACCAAGTAAAAATATCCCT 58.933 38.462 0.00 0.00 0.00 4.20
3070 5690 6.266786 CCACCCATACCAAGTAAAAATATCCC 59.733 42.308 0.00 0.00 0.00 3.85
3071 5691 6.239204 GCCACCCATACCAAGTAAAAATATCC 60.239 42.308 0.00 0.00 0.00 2.59
3072 5692 6.322712 TGCCACCCATACCAAGTAAAAATATC 59.677 38.462 0.00 0.00 0.00 1.63
3073 5693 6.198639 TGCCACCCATACCAAGTAAAAATAT 58.801 36.000 0.00 0.00 0.00 1.28
3074 5694 5.580998 TGCCACCCATACCAAGTAAAAATA 58.419 37.500 0.00 0.00 0.00 1.40
3075 5695 4.421131 TGCCACCCATACCAAGTAAAAAT 58.579 39.130 0.00 0.00 0.00 1.82
3076 5696 3.845860 TGCCACCCATACCAAGTAAAAA 58.154 40.909 0.00 0.00 0.00 1.94
3077 5697 3.527507 TGCCACCCATACCAAGTAAAA 57.472 42.857 0.00 0.00 0.00 1.52
3078 5698 3.158676 GTTGCCACCCATACCAAGTAAA 58.841 45.455 0.00 0.00 0.00 2.01
3079 5699 2.108425 TGTTGCCACCCATACCAAGTAA 59.892 45.455 0.00 0.00 0.00 2.24
3080 5700 1.705745 TGTTGCCACCCATACCAAGTA 59.294 47.619 0.00 0.00 0.00 2.24
3081 5701 0.480690 TGTTGCCACCCATACCAAGT 59.519 50.000 0.00 0.00 0.00 3.16
3082 5702 1.477700 CATGTTGCCACCCATACCAAG 59.522 52.381 0.00 0.00 0.00 3.61
3083 5703 1.076187 TCATGTTGCCACCCATACCAA 59.924 47.619 0.00 0.00 0.00 3.67
3084 5704 0.701147 TCATGTTGCCACCCATACCA 59.299 50.000 0.00 0.00 0.00 3.25
3085 5705 1.956477 GATCATGTTGCCACCCATACC 59.044 52.381 0.00 0.00 0.00 2.73
3086 5706 2.936202 AGATCATGTTGCCACCCATAC 58.064 47.619 0.00 0.00 0.00 2.39
3087 5707 3.668141 AAGATCATGTTGCCACCCATA 57.332 42.857 0.00 0.00 0.00 2.74
3088 5708 2.498481 CAAAGATCATGTTGCCACCCAT 59.502 45.455 0.00 0.00 0.00 4.00
3089 5709 1.894466 CAAAGATCATGTTGCCACCCA 59.106 47.619 0.00 0.00 0.00 4.51
3090 5710 1.205417 CCAAAGATCATGTTGCCACCC 59.795 52.381 0.00 0.00 0.00 4.61
3091 5711 2.170166 TCCAAAGATCATGTTGCCACC 58.830 47.619 0.00 0.00 0.00 4.61
3092 5712 4.082081 TCAATCCAAAGATCATGTTGCCAC 60.082 41.667 0.00 0.00 0.00 5.01
3093 5713 4.082081 GTCAATCCAAAGATCATGTTGCCA 60.082 41.667 0.00 0.00 0.00 4.92
3094 5714 4.427312 GTCAATCCAAAGATCATGTTGCC 58.573 43.478 0.00 0.00 0.00 4.52
3095 5715 4.427312 GGTCAATCCAAAGATCATGTTGC 58.573 43.478 0.00 0.00 35.97 4.17
3096 5716 4.708421 AGGGTCAATCCAAAGATCATGTTG 59.292 41.667 0.00 0.00 38.11 3.33
3097 5717 4.939255 AGGGTCAATCCAAAGATCATGTT 58.061 39.130 0.00 0.00 38.11 2.71
3098 5718 4.229123 AGAGGGTCAATCCAAAGATCATGT 59.771 41.667 0.00 0.00 38.11 3.21
3099 5719 4.789807 AGAGGGTCAATCCAAAGATCATG 58.210 43.478 0.00 0.00 38.11 3.07
3100 5720 5.463051 AAGAGGGTCAATCCAAAGATCAT 57.537 39.130 0.00 0.00 38.11 2.45
3101 5721 4.934797 AAGAGGGTCAATCCAAAGATCA 57.065 40.909 0.00 0.00 38.11 2.92
3102 5722 5.126779 GGTAAGAGGGTCAATCCAAAGATC 58.873 45.833 0.00 0.00 38.11 2.75
3103 5723 4.540099 TGGTAAGAGGGTCAATCCAAAGAT 59.460 41.667 0.00 0.00 38.11 2.40
3104 5724 3.913799 TGGTAAGAGGGTCAATCCAAAGA 59.086 43.478 0.00 0.00 38.11 2.52
3105 5725 4.010349 GTGGTAAGAGGGTCAATCCAAAG 58.990 47.826 0.00 0.00 38.11 2.77
3106 5726 3.655777 AGTGGTAAGAGGGTCAATCCAAA 59.344 43.478 0.00 0.00 38.11 3.28
3107 5727 3.256704 AGTGGTAAGAGGGTCAATCCAA 58.743 45.455 0.00 0.00 38.11 3.53
3108 5728 2.915869 AGTGGTAAGAGGGTCAATCCA 58.084 47.619 0.00 0.00 38.11 3.41
3109 5729 4.141688 CCTAAGTGGTAAGAGGGTCAATCC 60.142 50.000 0.00 0.00 0.00 3.01
3110 5730 4.683671 GCCTAAGTGGTAAGAGGGTCAATC 60.684 50.000 0.00 0.00 38.35 2.67
3111 5731 3.200165 GCCTAAGTGGTAAGAGGGTCAAT 59.800 47.826 0.00 0.00 38.35 2.57
3112 5732 2.570302 GCCTAAGTGGTAAGAGGGTCAA 59.430 50.000 0.00 0.00 38.35 3.18
3113 5733 2.185387 GCCTAAGTGGTAAGAGGGTCA 58.815 52.381 0.00 0.00 38.35 4.02
3114 5734 1.136500 CGCCTAAGTGGTAAGAGGGTC 59.864 57.143 0.00 0.00 38.35 4.46
3115 5735 1.192428 CGCCTAAGTGGTAAGAGGGT 58.808 55.000 0.00 0.00 38.35 4.34
3116 5736 0.179081 GCGCCTAAGTGGTAAGAGGG 60.179 60.000 0.00 0.00 38.35 4.30
3117 5737 0.824759 AGCGCCTAAGTGGTAAGAGG 59.175 55.000 2.29 0.00 38.35 3.69
3118 5738 2.544069 GCTAGCGCCTAAGTGGTAAGAG 60.544 54.545 2.29 0.00 36.13 2.85
3119 5739 1.407979 GCTAGCGCCTAAGTGGTAAGA 59.592 52.381 2.29 0.00 36.13 2.10
3120 5740 1.136305 TGCTAGCGCCTAAGTGGTAAG 59.864 52.381 10.77 0.00 36.13 2.34
3121 5741 1.136305 CTGCTAGCGCCTAAGTGGTAA 59.864 52.381 10.77 0.00 36.13 2.85
3122 5742 0.744874 CTGCTAGCGCCTAAGTGGTA 59.255 55.000 10.77 0.00 38.35 3.25
3123 5743 1.258445 ACTGCTAGCGCCTAAGTGGT 61.258 55.000 10.77 0.32 38.35 4.16
3124 5744 0.528684 GACTGCTAGCGCCTAAGTGG 60.529 60.000 10.77 0.00 39.35 4.00
3125 5745 0.457851 AGACTGCTAGCGCCTAAGTG 59.542 55.000 10.77 0.02 34.43 3.16
3126 5746 0.741915 GAGACTGCTAGCGCCTAAGT 59.258 55.000 10.77 7.33 34.43 2.24
3127 5747 0.031449 GGAGACTGCTAGCGCCTAAG 59.969 60.000 10.77 3.71 34.43 2.18
3128 5748 0.683179 TGGAGACTGCTAGCGCCTAA 60.683 55.000 10.77 0.00 34.43 2.69
3129 5749 1.076995 TGGAGACTGCTAGCGCCTA 60.077 57.895 10.77 0.00 34.43 3.93
3130 5750 2.363018 TGGAGACTGCTAGCGCCT 60.363 61.111 10.77 6.64 34.43 5.52
3131 5751 2.202810 GTGGAGACTGCTAGCGCC 60.203 66.667 10.77 6.82 34.43 6.53
3132 5752 1.142748 ATGTGGAGACTGCTAGCGC 59.857 57.895 10.77 0.00 0.00 5.92
3133 5753 0.457443 TCATGTGGAGACTGCTAGCG 59.543 55.000 10.77 7.61 0.00 4.26
3134 5754 2.906691 ATCATGTGGAGACTGCTAGC 57.093 50.000 8.10 8.10 0.00 3.42
3135 5755 5.528043 AGTAATCATGTGGAGACTGCTAG 57.472 43.478 0.00 0.00 0.00 3.42
3136 5756 5.187772 ACAAGTAATCATGTGGAGACTGCTA 59.812 40.000 0.00 0.00 0.00 3.49
3137 5757 4.019860 ACAAGTAATCATGTGGAGACTGCT 60.020 41.667 0.00 0.00 0.00 4.24
3138 5758 4.256920 ACAAGTAATCATGTGGAGACTGC 58.743 43.478 0.00 0.00 0.00 4.40
3139 5759 8.498054 AAATACAAGTAATCATGTGGAGACTG 57.502 34.615 0.00 0.00 0.00 3.51
3140 5760 8.950210 CAAAATACAAGTAATCATGTGGAGACT 58.050 33.333 0.00 0.00 0.00 3.24
3141 5761 7.698130 GCAAAATACAAGTAATCATGTGGAGAC 59.302 37.037 0.00 0.00 0.00 3.36
3142 5762 7.611467 AGCAAAATACAAGTAATCATGTGGAGA 59.389 33.333 0.00 0.00 0.00 3.71
3143 5763 7.765307 AGCAAAATACAAGTAATCATGTGGAG 58.235 34.615 0.00 0.00 0.00 3.86
3144 5764 7.611467 AGAGCAAAATACAAGTAATCATGTGGA 59.389 33.333 0.00 0.00 0.00 4.02
3145 5765 7.765307 AGAGCAAAATACAAGTAATCATGTGG 58.235 34.615 0.00 0.00 0.00 4.17
3146 5766 9.282247 GAAGAGCAAAATACAAGTAATCATGTG 57.718 33.333 0.00 0.00 0.00 3.21
3147 5767 9.236006 AGAAGAGCAAAATACAAGTAATCATGT 57.764 29.630 0.00 0.00 0.00 3.21
3150 5770 9.507329 AGAAGAAGAGCAAAATACAAGTAATCA 57.493 29.630 0.00 0.00 0.00 2.57
3177 5797 7.976734 ACCATAATCAAGTTCACGTTTCAAAAA 59.023 29.630 0.00 0.00 0.00 1.94
3178 5798 7.484975 ACCATAATCAAGTTCACGTTTCAAAA 58.515 30.769 0.00 0.00 0.00 2.44
3179 5799 7.033530 ACCATAATCAAGTTCACGTTTCAAA 57.966 32.000 0.00 0.00 0.00 2.69
3180 5800 6.627395 ACCATAATCAAGTTCACGTTTCAA 57.373 33.333 0.00 0.00 0.00 2.69
3181 5801 6.434596 CAACCATAATCAAGTTCACGTTTCA 58.565 36.000 0.00 0.00 0.00 2.69
3182 5802 5.342259 GCAACCATAATCAAGTTCACGTTTC 59.658 40.000 0.00 0.00 0.00 2.78
3183 5803 5.219633 GCAACCATAATCAAGTTCACGTTT 58.780 37.500 0.00 0.00 0.00 3.60
3184 5804 4.612712 CGCAACCATAATCAAGTTCACGTT 60.613 41.667 0.00 0.00 0.00 3.99
3185 5805 3.120338 CGCAACCATAATCAAGTTCACGT 60.120 43.478 0.00 0.00 0.00 4.49
3186 5806 3.120338 ACGCAACCATAATCAAGTTCACG 60.120 43.478 0.00 0.00 0.00 4.35
3187 5807 4.419522 ACGCAACCATAATCAAGTTCAC 57.580 40.909 0.00 0.00 0.00 3.18
3188 5808 4.998033 TGTACGCAACCATAATCAAGTTCA 59.002 37.500 0.00 0.00 0.00 3.18
3189 5809 5.539582 TGTACGCAACCATAATCAAGTTC 57.460 39.130 0.00 0.00 0.00 3.01
3190 5810 6.509418 AATGTACGCAACCATAATCAAGTT 57.491 33.333 0.00 0.00 0.00 2.66
3191 5811 6.509418 AAATGTACGCAACCATAATCAAGT 57.491 33.333 0.00 0.00 0.00 3.16
3192 5812 8.903570 TTAAAATGTACGCAACCATAATCAAG 57.096 30.769 0.00 0.00 0.00 3.02
3193 5813 9.862371 AATTAAAATGTACGCAACCATAATCAA 57.138 25.926 0.00 0.00 0.00 2.57
3197 5817 9.239002 GCATAATTAAAATGTACGCAACCATAA 57.761 29.630 0.00 0.00 0.00 1.90
3198 5818 8.406297 TGCATAATTAAAATGTACGCAACCATA 58.594 29.630 0.00 0.00 0.00 2.74
3199 5819 7.261325 TGCATAATTAAAATGTACGCAACCAT 58.739 30.769 0.00 0.00 0.00 3.55
3200 5820 6.621613 TGCATAATTAAAATGTACGCAACCA 58.378 32.000 0.00 0.00 0.00 3.67
3201 5821 6.970043 TCTGCATAATTAAAATGTACGCAACC 59.030 34.615 0.00 0.00 0.00 3.77
3202 5822 7.165812 CCTCTGCATAATTAAAATGTACGCAAC 59.834 37.037 0.00 0.00 0.00 4.17
3203 5823 7.192913 CCTCTGCATAATTAAAATGTACGCAA 58.807 34.615 0.00 0.00 0.00 4.85
3204 5824 6.724263 CCTCTGCATAATTAAAATGTACGCA 58.276 36.000 0.00 0.00 0.00 5.24
3205 5825 5.625311 GCCTCTGCATAATTAAAATGTACGC 59.375 40.000 0.00 0.00 37.47 4.42
3206 5826 6.959361 AGCCTCTGCATAATTAAAATGTACG 58.041 36.000 0.00 0.00 41.13 3.67
3207 5827 7.649306 CCAAGCCTCTGCATAATTAAAATGTAC 59.351 37.037 0.00 0.00 41.13 2.90
3208 5828 7.341769 ACCAAGCCTCTGCATAATTAAAATGTA 59.658 33.333 0.00 0.00 41.13 2.29
3209 5829 6.155049 ACCAAGCCTCTGCATAATTAAAATGT 59.845 34.615 0.00 0.00 41.13 2.71
3210 5830 6.477688 CACCAAGCCTCTGCATAATTAAAATG 59.522 38.462 0.00 0.00 41.13 2.32
3211 5831 6.155049 ACACCAAGCCTCTGCATAATTAAAAT 59.845 34.615 0.00 0.00 41.13 1.82
3212 5832 5.480073 ACACCAAGCCTCTGCATAATTAAAA 59.520 36.000 0.00 0.00 41.13 1.52
3213 5833 5.016173 ACACCAAGCCTCTGCATAATTAAA 58.984 37.500 0.00 0.00 41.13 1.52
3214 5834 4.599041 ACACCAAGCCTCTGCATAATTAA 58.401 39.130 0.00 0.00 41.13 1.40
3215 5835 4.235079 ACACCAAGCCTCTGCATAATTA 57.765 40.909 0.00 0.00 41.13 1.40
3216 5836 3.091633 ACACCAAGCCTCTGCATAATT 57.908 42.857 0.00 0.00 41.13 1.40
3217 5837 2.814805 ACACCAAGCCTCTGCATAAT 57.185 45.000 0.00 0.00 41.13 1.28
3218 5838 3.712016 TTACACCAAGCCTCTGCATAA 57.288 42.857 0.00 0.00 41.13 1.90
3219 5839 3.544684 CATTACACCAAGCCTCTGCATA 58.455 45.455 0.00 0.00 41.13 3.14
3220 5840 2.372264 CATTACACCAAGCCTCTGCAT 58.628 47.619 0.00 0.00 41.13 3.96
3221 5841 1.825090 CATTACACCAAGCCTCTGCA 58.175 50.000 0.00 0.00 41.13 4.41
3222 5842 0.453390 GCATTACACCAAGCCTCTGC 59.547 55.000 0.00 0.00 37.95 4.26
3223 5843 2.119801 AGCATTACACCAAGCCTCTG 57.880 50.000 0.00 0.00 0.00 3.35
3224 5844 2.887151 AAGCATTACACCAAGCCTCT 57.113 45.000 0.00 0.00 0.00 3.69
3225 5845 4.733850 GTTTAAGCATTACACCAAGCCTC 58.266 43.478 0.00 0.00 0.00 4.70
3226 5846 4.783764 GTTTAAGCATTACACCAAGCCT 57.216 40.909 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.