Multiple sequence alignment - TraesCS1D01G285900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G285900 chr1D 100.000 2267 0 0 1 2267 384125207 384127473 0.000000e+00 4187.0
1 TraesCS1D01G285900 chr1B 89.559 1475 81 24 126 1582 515050049 515051468 0.000000e+00 1803.0
2 TraesCS1D01G285900 chr1B 91.538 130 4 4 1 129 515049566 515049689 2.990000e-39 172.0
3 TraesCS1D01G285900 chr1A 86.984 1114 80 36 549 1626 483861244 483862328 0.000000e+00 1194.0
4 TraesCS1D01G285900 chr1A 87.109 512 37 17 1 496 483860635 483861133 9.150000e-154 553.0
5 TraesCS1D01G285900 chr1A 87.864 206 24 1 2061 2265 483862648 483862853 8.090000e-60 241.0
6 TraesCS1D01G285900 chr1A 89.130 92 2 4 1976 2066 483862373 483862457 8.560000e-20 108.0
7 TraesCS1D01G285900 chr3A 89.691 97 8 1 1828 1922 607462846 607462750 3.060000e-24 122.0
8 TraesCS1D01G285900 chr5B 89.362 94 8 2 1831 1922 703256681 703256774 1.420000e-22 117.0
9 TraesCS1D01G285900 chr6B 91.549 71 6 0 1852 1922 658822995 658823065 5.150000e-17 99.0
10 TraesCS1D01G285900 chr6B 96.970 33 1 0 1627 1659 653388075 653388043 3.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G285900 chr1D 384125207 384127473 2266 False 4187.0 4187 100.00000 1 2267 1 chr1D.!!$F1 2266
1 TraesCS1D01G285900 chr1B 515049566 515051468 1902 False 987.5 1803 90.54850 1 1582 2 chr1B.!!$F1 1581
2 TraesCS1D01G285900 chr1A 483860635 483862853 2218 False 524.0 1194 87.77175 1 2265 4 chr1A.!!$F1 2264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 1374 0.105142 TATAAAGCCTCCGCCTCCCT 60.105 55.0 0.0 0.0 34.57 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2283 0.035725 GGGGGCAGTTTAGTTAGCGT 60.036 55.0 0.0 0.0 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 19 2.864589 ACGTAACCAAATGGCGCG 59.135 55.556 0.00 0.00 39.32 6.86
51 53 3.474570 AGAGCGTGGCCTCCCATC 61.475 66.667 3.32 0.00 44.51 3.51
83 85 2.078392 TGTTTTATTCGCCGAGGAACC 58.922 47.619 0.00 0.00 0.00 3.62
297 672 2.676471 GCCACCCAATCCGTGCTT 60.676 61.111 0.00 0.00 0.00 3.91
323 698 8.585018 TCAATATCTCTTCCTGCACGATTATTA 58.415 33.333 0.00 0.00 0.00 0.98
370 745 6.127730 GCAGCAAACTACATTTTATAGGTGGT 60.128 38.462 0.00 0.00 0.00 4.16
375 763 7.504926 AACTACATTTTATAGGTGGTCAGGA 57.495 36.000 0.00 0.00 0.00 3.86
386 774 0.614979 TGGTCAGGACAGGAGTAGCC 60.615 60.000 1.41 0.00 0.00 3.93
389 777 1.834263 GTCAGGACAGGAGTAGCCATT 59.166 52.381 0.00 0.00 40.02 3.16
390 778 2.111384 TCAGGACAGGAGTAGCCATTC 58.889 52.381 0.00 0.00 40.02 2.67
419 807 5.831702 TGCCATTGCAAAACATTTCTTTT 57.168 30.435 1.71 0.00 46.66 2.27
475 863 4.708576 TGTTGGGTTGTACATCCAAGTA 57.291 40.909 23.38 15.97 40.71 2.24
510 929 4.850680 AGGTGAACTCCACTTACAAACAA 58.149 39.130 0.00 0.00 45.03 2.83
512 931 6.597562 AGGTGAACTCCACTTACAAACAATA 58.402 36.000 0.00 0.00 45.03 1.90
529 948 9.912634 ACAAACAATAAAAACATCATCTACTGG 57.087 29.630 0.00 0.00 0.00 4.00
570 1017 6.486657 TGGCTGGAATACTAAAGCATATGTTC 59.513 38.462 4.29 0.00 37.40 3.18
660 1112 6.651755 CCATTTTCATGGGATTTTTCTTCG 57.348 37.500 0.00 0.00 45.99 3.79
693 1154 3.818787 GCAATGGCCACCTGCTCG 61.819 66.667 27.03 6.04 40.92 5.03
799 1267 2.288395 CCAGGTGATGCCAAAACAGTTC 60.288 50.000 0.00 0.00 40.61 3.01
823 1293 5.856455 CGTTAATGATGTTCCTTTGTCCAAC 59.144 40.000 0.00 0.00 0.00 3.77
843 1313 8.635328 GTCCAACAAAAGGGAAATTAACTCTTA 58.365 33.333 0.00 0.00 34.34 2.10
849 1325 8.802267 CAAAAGGGAAATTAACTCTTATCACCA 58.198 33.333 0.00 0.00 0.00 4.17
870 1346 0.443869 CCGTCCAAACTGAGCATTCG 59.556 55.000 0.00 0.00 0.00 3.34
876 1352 1.734465 CAAACTGAGCATTCGTCCTCC 59.266 52.381 0.00 0.00 0.00 4.30
898 1374 0.105142 TATAAAGCCTCCGCCTCCCT 60.105 55.000 0.00 0.00 34.57 4.20
931 1407 1.178534 CCACAACACCATCACCCACC 61.179 60.000 0.00 0.00 0.00 4.61
994 1470 1.675552 GTGCACACACACCTAACCTT 58.324 50.000 13.17 0.00 46.61 3.50
1076 1552 4.736896 GCCGGAGAACTTCGCGGT 62.737 66.667 5.05 0.00 39.99 5.68
1273 1752 3.069079 AGATCGGCGCCTAGATTAGTA 57.931 47.619 26.68 0.00 0.00 1.82
1278 1757 0.733223 GCGCCTAGATTAGTAGCGGC 60.733 60.000 0.00 0.00 0.00 6.53
1315 1794 4.687215 GGCACGGCTCAGAGCACA 62.687 66.667 24.09 0.00 44.75 4.57
1349 1828 1.015249 CGTAATACGTGCGTGCGTG 60.015 57.895 14.68 0.00 45.33 5.34
1350 1829 1.295645 GTAATACGTGCGTGCGTGC 60.296 57.895 14.68 0.00 45.33 5.34
1351 1830 2.780012 TAATACGTGCGTGCGTGCG 61.780 57.895 14.68 7.92 45.33 5.34
1424 1909 4.962836 AGCTTTGCTGCAGCCGGT 62.963 61.111 34.64 24.15 37.57 5.28
1561 2047 7.929941 TGCATGTAAGGTGTGATGTTATTTA 57.070 32.000 0.00 0.00 0.00 1.40
1584 2070 6.679327 ACGAGTTTAAAGCTCTTCAAAGTT 57.321 33.333 12.75 0.00 0.00 2.66
1586 2072 6.315393 ACGAGTTTAAAGCTCTTCAAAGTTCA 59.685 34.615 12.75 0.00 0.00 3.18
1589 2075 8.689251 AGTTTAAAGCTCTTCAAAGTTCAAAC 57.311 30.769 0.00 0.00 0.00 2.93
1590 2076 8.523658 AGTTTAAAGCTCTTCAAAGTTCAAACT 58.476 29.630 0.00 0.00 42.04 2.66
1591 2077 9.783256 GTTTAAAGCTCTTCAAAGTTCAAACTA 57.217 29.630 0.00 0.00 38.57 2.24
1592 2078 9.783256 TTTAAAGCTCTTCAAAGTTCAAACTAC 57.217 29.630 0.00 0.00 38.57 2.73
1593 2079 7.631717 AAAGCTCTTCAAAGTTCAAACTACT 57.368 32.000 0.00 0.00 38.57 2.57
1594 2080 8.732746 AAAGCTCTTCAAAGTTCAAACTACTA 57.267 30.769 0.00 0.00 38.57 1.82
1595 2081 8.732746 AAGCTCTTCAAAGTTCAAACTACTAA 57.267 30.769 0.00 0.00 38.57 2.24
1598 2084 8.017946 GCTCTTCAAAGTTCAAACTACTAATGG 58.982 37.037 0.00 0.00 38.57 3.16
1599 2085 8.974060 TCTTCAAAGTTCAAACTACTAATGGT 57.026 30.769 0.00 0.00 38.57 3.55
1600 2086 8.836413 TCTTCAAAGTTCAAACTACTAATGGTG 58.164 33.333 0.00 0.00 38.57 4.17
1601 2087 8.514330 TTCAAAGTTCAAACTACTAATGGTGT 57.486 30.769 0.00 0.00 38.57 4.16
1602 2088 9.616156 TTCAAAGTTCAAACTACTAATGGTGTA 57.384 29.630 0.00 0.00 38.57 2.90
1603 2089 9.787435 TCAAAGTTCAAACTACTAATGGTGTAT 57.213 29.630 0.00 0.00 38.57 2.29
1626 2112 4.571984 TCTGATGATGTTTCACCATTAGCG 59.428 41.667 0.00 0.00 33.85 4.26
1627 2113 3.627123 TGATGATGTTTCACCATTAGCGG 59.373 43.478 0.00 0.00 33.85 5.52
1628 2114 1.742831 TGATGTTTCACCATTAGCGGC 59.257 47.619 0.00 0.00 0.00 6.53
1629 2115 2.017049 GATGTTTCACCATTAGCGGCT 58.983 47.619 7.98 7.98 0.00 5.52
1630 2116 1.164411 TGTTTCACCATTAGCGGCTG 58.836 50.000 13.86 0.00 0.00 4.85
1631 2117 1.165270 GTTTCACCATTAGCGGCTGT 58.835 50.000 13.86 0.00 0.00 4.40
1632 2118 2.289756 TGTTTCACCATTAGCGGCTGTA 60.290 45.455 13.86 0.38 0.00 2.74
1633 2119 2.943033 GTTTCACCATTAGCGGCTGTAT 59.057 45.455 13.86 3.07 0.00 2.29
1634 2120 2.238942 TCACCATTAGCGGCTGTATG 57.761 50.000 13.86 15.07 0.00 2.39
1635 2121 0.588252 CACCATTAGCGGCTGTATGC 59.412 55.000 13.86 0.00 41.94 3.14
1636 2122 0.180171 ACCATTAGCGGCTGTATGCA 59.820 50.000 13.86 0.00 45.15 3.96
1637 2123 1.202806 ACCATTAGCGGCTGTATGCAT 60.203 47.619 13.86 3.79 45.15 3.96
1638 2124 1.466167 CCATTAGCGGCTGTATGCATC 59.534 52.381 13.86 0.00 45.15 3.91
1639 2125 2.420642 CATTAGCGGCTGTATGCATCT 58.579 47.619 13.86 0.00 45.15 2.90
1640 2126 3.588955 CATTAGCGGCTGTATGCATCTA 58.411 45.455 13.86 0.00 45.15 1.98
1641 2127 3.961480 TTAGCGGCTGTATGCATCTAT 57.039 42.857 13.86 0.00 45.15 1.98
1642 2128 2.847327 AGCGGCTGTATGCATCTATT 57.153 45.000 0.19 0.00 45.15 1.73
1643 2129 2.420642 AGCGGCTGTATGCATCTATTG 58.579 47.619 0.19 0.00 45.15 1.90
1644 2130 2.037641 AGCGGCTGTATGCATCTATTGA 59.962 45.455 0.19 0.00 45.15 2.57
1645 2131 3.005554 GCGGCTGTATGCATCTATTGAT 58.994 45.455 0.19 0.00 45.15 2.57
1655 2141 2.074576 CATCTATTGATGCAGAGGCCG 58.925 52.381 4.18 0.00 42.83 6.13
1656 2142 0.394192 TCTATTGATGCAGAGGCCGG 59.606 55.000 0.00 0.00 40.13 6.13
1657 2143 0.604780 CTATTGATGCAGAGGCCGGG 60.605 60.000 2.18 0.00 40.13 5.73
1658 2144 2.055689 TATTGATGCAGAGGCCGGGG 62.056 60.000 2.18 0.00 40.13 5.73
1660 2146 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
1671 2157 4.123545 CGGGGAGGCGGGGATTTT 62.124 66.667 0.00 0.00 0.00 1.82
1672 2158 2.748513 CGGGGAGGCGGGGATTTTA 61.749 63.158 0.00 0.00 0.00 1.52
1673 2159 1.616367 GGGGAGGCGGGGATTTTAA 59.384 57.895 0.00 0.00 0.00 1.52
1674 2160 0.754217 GGGGAGGCGGGGATTTTAAC 60.754 60.000 0.00 0.00 0.00 2.01
1675 2161 0.754217 GGGAGGCGGGGATTTTAACC 60.754 60.000 0.00 0.00 0.00 2.85
1676 2162 0.257905 GGAGGCGGGGATTTTAACCT 59.742 55.000 0.00 0.00 0.00 3.50
1677 2163 1.676746 GAGGCGGGGATTTTAACCTC 58.323 55.000 0.00 0.00 37.17 3.85
1678 2164 0.257905 AGGCGGGGATTTTAACCTCC 59.742 55.000 0.00 0.00 0.00 4.30
1679 2165 0.257905 GGCGGGGATTTTAACCTCCT 59.742 55.000 3.21 0.00 0.00 3.69
1680 2166 1.341679 GGCGGGGATTTTAACCTCCTT 60.342 52.381 3.21 0.00 0.00 3.36
1681 2167 2.453521 GCGGGGATTTTAACCTCCTTT 58.546 47.619 3.21 0.00 0.00 3.11
1682 2168 2.829720 GCGGGGATTTTAACCTCCTTTT 59.170 45.455 3.21 0.00 0.00 2.27
1683 2169 3.259876 GCGGGGATTTTAACCTCCTTTTT 59.740 43.478 3.21 0.00 0.00 1.94
1684 2170 4.619863 GCGGGGATTTTAACCTCCTTTTTC 60.620 45.833 3.21 0.00 0.00 2.29
1685 2171 4.525100 CGGGGATTTTAACCTCCTTTTTCA 59.475 41.667 3.21 0.00 0.00 2.69
1686 2172 5.011227 CGGGGATTTTAACCTCCTTTTTCAA 59.989 40.000 3.21 0.00 0.00 2.69
1687 2173 6.463190 CGGGGATTTTAACCTCCTTTTTCAAA 60.463 38.462 3.21 0.00 0.00 2.69
1688 2174 7.284074 GGGGATTTTAACCTCCTTTTTCAAAA 58.716 34.615 3.21 0.00 0.00 2.44
1689 2175 7.776030 GGGGATTTTAACCTCCTTTTTCAAAAA 59.224 33.333 0.00 0.00 0.00 1.94
1728 2214 9.847224 TTACTCTGAAAGTCCTAAAATGTCTTT 57.153 29.630 0.00 0.00 39.55 2.52
1729 2215 8.384607 ACTCTGAAAGTCCTAAAATGTCTTTC 57.615 34.615 0.00 0.00 42.10 2.62
1734 2220 9.801873 TGAAAGTCCTAAAATGTCTTTCTTTTG 57.198 29.630 14.12 0.00 42.19 2.44
1738 2224 9.586435 AGTCCTAAAATGTCTTTCTTTTGTTTG 57.414 29.630 0.00 0.00 0.00 2.93
1740 2226 9.936759 TCCTAAAATGTCTTTCTTTTGTTTGTT 57.063 25.926 0.00 0.00 0.00 2.83
1745 2231 5.300752 TGTCTTTCTTTTGTTTGTTTGCCA 58.699 33.333 0.00 0.00 0.00 4.92
1746 2232 5.760253 TGTCTTTCTTTTGTTTGTTTGCCAA 59.240 32.000 0.00 0.00 0.00 4.52
1747 2233 6.429385 TGTCTTTCTTTTGTTTGTTTGCCAAT 59.571 30.769 0.00 0.00 31.81 3.16
1748 2234 7.604164 TGTCTTTCTTTTGTTTGTTTGCCAATA 59.396 29.630 0.00 0.00 31.81 1.90
1749 2235 8.447053 GTCTTTCTTTTGTTTGTTTGCCAATAA 58.553 29.630 0.00 0.00 31.81 1.40
1752 2238 6.723282 TCTTTTGTTTGTTTGCCAATAATGC 58.277 32.000 0.00 0.00 31.81 3.56
1753 2239 6.541641 TCTTTTGTTTGTTTGCCAATAATGCT 59.458 30.769 0.00 0.00 31.81 3.79
1754 2240 7.712639 TCTTTTGTTTGTTTGCCAATAATGCTA 59.287 29.630 0.00 0.00 31.81 3.49
1755 2241 6.777526 TTGTTTGTTTGCCAATAATGCTAC 57.222 33.333 0.00 0.00 31.81 3.58
1756 2242 5.847304 TGTTTGTTTGCCAATAATGCTACA 58.153 33.333 0.00 0.00 31.81 2.74
1757 2243 5.694006 TGTTTGTTTGCCAATAATGCTACAC 59.306 36.000 0.00 0.00 31.81 2.90
1758 2244 4.448537 TGTTTGCCAATAATGCTACACC 57.551 40.909 0.00 0.00 0.00 4.16
1759 2245 4.085733 TGTTTGCCAATAATGCTACACCT 58.914 39.130 0.00 0.00 0.00 4.00
1760 2246 5.257262 TGTTTGCCAATAATGCTACACCTA 58.743 37.500 0.00 0.00 0.00 3.08
1761 2247 5.124776 TGTTTGCCAATAATGCTACACCTAC 59.875 40.000 0.00 0.00 0.00 3.18
1762 2248 3.462982 TGCCAATAATGCTACACCTACG 58.537 45.455 0.00 0.00 0.00 3.51
1763 2249 3.118555 TGCCAATAATGCTACACCTACGT 60.119 43.478 0.00 0.00 0.00 3.57
1764 2250 3.247648 GCCAATAATGCTACACCTACGTG 59.752 47.826 0.00 0.00 46.11 4.49
1765 2251 4.689071 CCAATAATGCTACACCTACGTGA 58.311 43.478 0.00 0.00 43.14 4.35
1766 2252 5.297547 CCAATAATGCTACACCTACGTGAT 58.702 41.667 0.00 0.00 43.14 3.06
1767 2253 5.177511 CCAATAATGCTACACCTACGTGATG 59.822 44.000 0.00 0.00 43.14 3.07
1768 2254 2.890808 ATGCTACACCTACGTGATGG 57.109 50.000 0.00 0.00 43.14 3.51
1769 2255 1.552578 TGCTACACCTACGTGATGGT 58.447 50.000 0.00 0.45 43.14 3.55
1770 2256 1.897133 TGCTACACCTACGTGATGGTT 59.103 47.619 0.00 0.00 43.14 3.67
1771 2257 2.300723 TGCTACACCTACGTGATGGTTT 59.699 45.455 0.00 0.00 43.14 3.27
1772 2258 3.510753 TGCTACACCTACGTGATGGTTTA 59.489 43.478 0.00 0.85 43.14 2.01
1773 2259 3.861689 GCTACACCTACGTGATGGTTTAC 59.138 47.826 0.00 0.00 43.14 2.01
1774 2260 4.381292 GCTACACCTACGTGATGGTTTACT 60.381 45.833 0.00 0.00 43.14 2.24
1775 2261 5.163622 GCTACACCTACGTGATGGTTTACTA 60.164 44.000 0.00 0.00 43.14 1.82
1776 2262 5.726980 ACACCTACGTGATGGTTTACTAA 57.273 39.130 0.00 0.00 43.14 2.24
1777 2263 6.100404 ACACCTACGTGATGGTTTACTAAA 57.900 37.500 0.00 0.00 43.14 1.85
1778 2264 6.161381 ACACCTACGTGATGGTTTACTAAAG 58.839 40.000 0.00 0.00 43.14 1.85
1779 2265 5.579511 CACCTACGTGATGGTTTACTAAAGG 59.420 44.000 0.00 0.00 43.14 3.11
1780 2266 5.246883 ACCTACGTGATGGTTTACTAAAGGT 59.753 40.000 0.00 0.00 31.62 3.50
1781 2267 6.168389 CCTACGTGATGGTTTACTAAAGGTT 58.832 40.000 0.00 0.00 0.00 3.50
1782 2268 7.039082 ACCTACGTGATGGTTTACTAAAGGTTA 60.039 37.037 0.00 0.00 31.62 2.85
1783 2269 7.276438 CCTACGTGATGGTTTACTAAAGGTTAC 59.724 40.741 0.00 0.00 0.00 2.50
1784 2270 5.634859 ACGTGATGGTTTACTAAAGGTTACG 59.365 40.000 0.00 0.00 0.00 3.18
1785 2271 5.634859 CGTGATGGTTTACTAAAGGTTACGT 59.365 40.000 0.00 0.00 0.00 3.57
1786 2272 6.806249 CGTGATGGTTTACTAAAGGTTACGTA 59.194 38.462 0.00 0.00 0.00 3.57
1787 2273 7.328249 CGTGATGGTTTACTAAAGGTTACGTAA 59.672 37.037 3.29 3.29 0.00 3.18
1788 2274 8.987890 GTGATGGTTTACTAAAGGTTACGTAAA 58.012 33.333 10.11 0.00 31.56 2.01
1789 2275 9.723601 TGATGGTTTACTAAAGGTTACGTAAAT 57.276 29.630 10.11 0.00 35.21 1.40
1791 2277 8.546597 TGGTTTACTAAAGGTTACGTAAATCC 57.453 34.615 10.11 8.22 33.96 3.01
1792 2278 8.153550 TGGTTTACTAAAGGTTACGTAAATCCA 58.846 33.333 10.11 3.39 33.96 3.41
1793 2279 9.166173 GGTTTACTAAAGGTTACGTAAATCCAT 57.834 33.333 10.11 0.00 35.21 3.41
1796 2282 7.854557 ACTAAAGGTTACGTAAATCCATTCC 57.145 36.000 10.11 5.19 0.00 3.01
1797 2283 7.396418 ACTAAAGGTTACGTAAATCCATTCCA 58.604 34.615 10.11 0.00 0.00 3.53
1798 2284 6.505044 AAAGGTTACGTAAATCCATTCCAC 57.495 37.500 10.11 0.00 0.00 4.02
1799 2285 4.186159 AGGTTACGTAAATCCATTCCACG 58.814 43.478 10.11 0.00 35.52 4.94
1800 2286 3.242511 GGTTACGTAAATCCATTCCACGC 60.243 47.826 10.11 0.00 33.85 5.34
1801 2287 2.396590 ACGTAAATCCATTCCACGCT 57.603 45.000 0.00 0.00 33.85 5.07
1802 2288 3.530265 ACGTAAATCCATTCCACGCTA 57.470 42.857 0.00 0.00 33.85 4.26
1803 2289 3.864243 ACGTAAATCCATTCCACGCTAA 58.136 40.909 0.00 0.00 33.85 3.09
1804 2290 3.619929 ACGTAAATCCATTCCACGCTAAC 59.380 43.478 0.00 0.00 33.85 2.34
1805 2291 3.869246 CGTAAATCCATTCCACGCTAACT 59.131 43.478 0.00 0.00 0.00 2.24
1806 2292 5.045215 CGTAAATCCATTCCACGCTAACTA 58.955 41.667 0.00 0.00 0.00 2.24
1807 2293 5.521010 CGTAAATCCATTCCACGCTAACTAA 59.479 40.000 0.00 0.00 0.00 2.24
1808 2294 6.036300 CGTAAATCCATTCCACGCTAACTAAA 59.964 38.462 0.00 0.00 0.00 1.85
1809 2295 5.813080 AATCCATTCCACGCTAACTAAAC 57.187 39.130 0.00 0.00 0.00 2.01
1810 2296 4.546829 TCCATTCCACGCTAACTAAACT 57.453 40.909 0.00 0.00 0.00 2.66
1811 2297 4.250464 TCCATTCCACGCTAACTAAACTG 58.750 43.478 0.00 0.00 0.00 3.16
1812 2298 3.181510 CCATTCCACGCTAACTAAACTGC 60.182 47.826 0.00 0.00 0.00 4.40
1813 2299 2.088950 TCCACGCTAACTAAACTGCC 57.911 50.000 0.00 0.00 0.00 4.85
1814 2300 1.084289 CCACGCTAACTAAACTGCCC 58.916 55.000 0.00 0.00 0.00 5.36
1815 2301 1.084289 CACGCTAACTAAACTGCCCC 58.916 55.000 0.00 0.00 0.00 5.80
1816 2302 0.035725 ACGCTAACTAAACTGCCCCC 60.036 55.000 0.00 0.00 0.00 5.40
1836 2322 1.485124 CCTGATTTTTAGGGTGGGCC 58.515 55.000 0.00 0.00 0.00 5.80
1850 2336 3.376078 GGCCCGTGTGACGAGGTA 61.376 66.667 0.00 0.00 46.05 3.08
1851 2337 2.652530 GCCCGTGTGACGAGGTAA 59.347 61.111 0.00 0.00 46.05 2.85
1852 2338 1.445582 GCCCGTGTGACGAGGTAAG 60.446 63.158 0.00 0.00 46.05 2.34
1853 2339 1.214589 CCCGTGTGACGAGGTAAGG 59.785 63.158 0.00 0.00 46.05 2.69
1854 2340 1.445582 CCGTGTGACGAGGTAAGGC 60.446 63.158 0.00 0.00 46.05 4.35
1855 2341 1.445582 CGTGTGACGAGGTAAGGCC 60.446 63.158 0.00 0.00 46.05 5.19
1856 2342 1.079336 GTGTGACGAGGTAAGGCCC 60.079 63.158 0.00 0.00 38.26 5.80
1857 2343 1.534476 TGTGACGAGGTAAGGCCCA 60.534 57.895 0.00 0.00 38.26 5.36
1858 2344 1.122632 TGTGACGAGGTAAGGCCCAA 61.123 55.000 0.00 0.00 38.26 4.12
1859 2345 0.252197 GTGACGAGGTAAGGCCCAAT 59.748 55.000 0.00 0.00 38.26 3.16
1860 2346 1.483415 GTGACGAGGTAAGGCCCAATA 59.517 52.381 0.00 0.00 38.26 1.90
1861 2347 2.104281 GTGACGAGGTAAGGCCCAATAT 59.896 50.000 0.00 0.00 38.26 1.28
1862 2348 3.322828 GTGACGAGGTAAGGCCCAATATA 59.677 47.826 0.00 0.00 38.26 0.86
1863 2349 3.968649 TGACGAGGTAAGGCCCAATATAA 59.031 43.478 0.00 0.00 38.26 0.98
1864 2350 4.595781 TGACGAGGTAAGGCCCAATATAAT 59.404 41.667 0.00 0.00 38.26 1.28
1865 2351 5.072600 TGACGAGGTAAGGCCCAATATAATT 59.927 40.000 0.00 0.00 38.26 1.40
1866 2352 5.948842 ACGAGGTAAGGCCCAATATAATTT 58.051 37.500 0.00 0.00 38.26 1.82
1867 2353 6.002082 ACGAGGTAAGGCCCAATATAATTTC 58.998 40.000 0.00 0.00 38.26 2.17
1868 2354 6.001460 CGAGGTAAGGCCCAATATAATTTCA 58.999 40.000 0.00 0.00 38.26 2.69
1869 2355 6.072673 CGAGGTAAGGCCCAATATAATTTCAC 60.073 42.308 0.00 0.00 38.26 3.18
1870 2356 6.075315 AGGTAAGGCCCAATATAATTTCACC 58.925 40.000 0.00 0.00 38.26 4.02
1871 2357 5.836358 GGTAAGGCCCAATATAATTTCACCA 59.164 40.000 0.00 0.00 0.00 4.17
1872 2358 5.869649 AAGGCCCAATATAATTTCACCAC 57.130 39.130 0.00 0.00 0.00 4.16
1873 2359 3.888930 AGGCCCAATATAATTTCACCACG 59.111 43.478 0.00 0.00 0.00 4.94
1874 2360 3.634910 GGCCCAATATAATTTCACCACGT 59.365 43.478 0.00 0.00 0.00 4.49
1875 2361 4.261447 GGCCCAATATAATTTCACCACGTC 60.261 45.833 0.00 0.00 0.00 4.34
1876 2362 4.553938 GCCCAATATAATTTCACCACGTCG 60.554 45.833 0.00 0.00 0.00 5.12
1877 2363 4.024387 CCCAATATAATTTCACCACGTCGG 60.024 45.833 0.00 2.92 42.50 4.79
1878 2364 4.812091 CCAATATAATTTCACCACGTCGGA 59.188 41.667 10.46 0.00 38.63 4.55
1879 2365 5.468746 CCAATATAATTTCACCACGTCGGAT 59.531 40.000 10.46 0.00 38.63 4.18
1880 2366 6.362686 CAATATAATTTCACCACGTCGGATG 58.637 40.000 10.46 0.00 38.63 3.51
1881 2367 0.802494 AATTTCACCACGTCGGATGC 59.198 50.000 10.46 0.00 38.63 3.91
1882 2368 0.036388 ATTTCACCACGTCGGATGCT 60.036 50.000 10.46 0.00 38.63 3.79
1883 2369 0.604073 TTTCACCACGTCGGATGCTA 59.396 50.000 10.46 0.00 38.63 3.49
1884 2370 0.108992 TTCACCACGTCGGATGCTAC 60.109 55.000 10.46 0.00 38.63 3.58
1885 2371 1.872234 CACCACGTCGGATGCTACG 60.872 63.158 9.73 9.73 44.47 3.51
1890 2376 3.159446 CGTCGGATGCTACGTAAGG 57.841 57.895 3.01 0.00 46.39 2.69
1891 2377 0.379669 CGTCGGATGCTACGTAAGGT 59.620 55.000 3.01 0.00 46.39 3.50
1892 2378 1.599071 CGTCGGATGCTACGTAAGGTA 59.401 52.381 3.01 0.00 46.39 3.08
1905 2391 7.579761 CTACGTAAGGTAGGTAGAAATCCTT 57.420 40.000 8.71 0.00 45.29 3.36
1906 2392 8.682936 CTACGTAAGGTAGGTAGAAATCCTTA 57.317 38.462 8.71 0.00 45.29 2.69
1909 2395 7.340122 GTAAGGTAGGTAGAAATCCTTACGT 57.660 40.000 13.92 0.00 45.36 3.57
1910 2396 8.451908 GTAAGGTAGGTAGAAATCCTTACGTA 57.548 38.462 13.92 0.00 45.36 3.57
1911 2397 7.961326 AAGGTAGGTAGAAATCCTTACGTAA 57.039 36.000 7.94 7.94 36.84 3.18
1912 2398 7.579761 AGGTAGGTAGAAATCCTTACGTAAG 57.420 40.000 25.33 25.33 38.90 2.34
1913 2399 7.122048 AGGTAGGTAGAAATCCTTACGTAAGT 58.878 38.462 28.60 14.05 44.46 2.24
1914 2400 7.067981 AGGTAGGTAGAAATCCTTACGTAAGTG 59.932 40.741 28.60 20.98 43.12 3.16
1915 2401 7.148000 GGTAGGTAGAAATCCTTACGTAAGTGT 60.148 40.741 28.60 16.63 43.12 3.55
1916 2402 8.893727 GTAGGTAGAAATCCTTACGTAAGTGTA 58.106 37.037 28.60 16.75 43.12 2.90
1917 2403 9.113838 TAGGTAGAAATCCTTACGTAAGTGTAG 57.886 37.037 28.60 16.30 43.12 2.74
1931 2417 1.800805 GTGTAGCATCACACAGCTGT 58.199 50.000 15.25 15.25 46.55 4.40
1932 2418 2.959516 GTGTAGCATCACACAGCTGTA 58.040 47.619 21.20 4.30 46.55 2.74
1933 2419 2.668457 GTGTAGCATCACACAGCTGTAC 59.332 50.000 21.20 12.06 46.55 2.90
1934 2420 2.271800 GTAGCATCACACAGCTGTACC 58.728 52.381 21.20 4.37 41.97 3.34
1935 2421 0.036010 AGCATCACACAGCTGTACCC 60.036 55.000 21.20 5.10 40.13 3.69
1936 2422 0.321564 GCATCACACAGCTGTACCCA 60.322 55.000 21.20 4.13 0.00 4.51
1937 2423 1.679944 GCATCACACAGCTGTACCCAT 60.680 52.381 21.20 6.49 0.00 4.00
1938 2424 2.419990 GCATCACACAGCTGTACCCATA 60.420 50.000 21.20 2.47 0.00 2.74
1939 2425 3.872696 CATCACACAGCTGTACCCATAA 58.127 45.455 21.20 1.37 0.00 1.90
1940 2426 3.328382 TCACACAGCTGTACCCATAAC 57.672 47.619 21.20 0.00 0.00 1.89
1941 2427 1.999735 CACACAGCTGTACCCATAACG 59.000 52.381 21.20 6.25 0.00 3.18
1942 2428 1.621814 ACACAGCTGTACCCATAACGT 59.378 47.619 21.20 6.97 0.00 3.99
1943 2429 1.999735 CACAGCTGTACCCATAACGTG 59.000 52.381 21.20 0.00 0.00 4.49
1944 2430 1.897133 ACAGCTGTACCCATAACGTGA 59.103 47.619 20.16 0.00 0.00 4.35
1945 2431 2.300723 ACAGCTGTACCCATAACGTGAA 59.699 45.455 20.16 0.00 0.00 3.18
1946 2432 3.244284 ACAGCTGTACCCATAACGTGAAA 60.244 43.478 20.16 0.00 0.00 2.69
1947 2433 3.749088 CAGCTGTACCCATAACGTGAAAA 59.251 43.478 5.25 0.00 0.00 2.29
1948 2434 4.214545 CAGCTGTACCCATAACGTGAAAAA 59.785 41.667 5.25 0.00 0.00 1.94
1965 2451 3.570912 AAAAAGAAGGGACCGTTCAGA 57.429 42.857 24.85 0.00 0.00 3.27
1966 2452 3.790089 AAAAGAAGGGACCGTTCAGAT 57.210 42.857 24.85 10.79 0.00 2.90
1967 2453 2.770164 AAGAAGGGACCGTTCAGATG 57.230 50.000 24.85 0.00 0.00 2.90
1968 2454 0.250513 AGAAGGGACCGTTCAGATGC 59.749 55.000 24.85 1.88 0.00 3.91
1969 2455 0.744771 GAAGGGACCGTTCAGATGCC 60.745 60.000 19.69 0.00 0.00 4.40
1970 2456 1.201429 AAGGGACCGTTCAGATGCCT 61.201 55.000 0.00 0.00 0.00 4.75
1971 2457 0.325296 AGGGACCGTTCAGATGCCTA 60.325 55.000 0.00 0.00 0.00 3.93
1972 2458 0.759346 GGGACCGTTCAGATGCCTAT 59.241 55.000 0.00 0.00 0.00 2.57
1973 2459 1.141053 GGGACCGTTCAGATGCCTATT 59.859 52.381 0.00 0.00 0.00 1.73
1974 2460 2.484889 GGACCGTTCAGATGCCTATTC 58.515 52.381 0.00 0.00 0.00 1.75
2028 2514 4.983671 GATTAGGATCCAACCAACAACC 57.016 45.455 15.82 0.00 0.00 3.77
2029 2515 4.600062 GATTAGGATCCAACCAACAACCT 58.400 43.478 15.82 0.00 0.00 3.50
2030 2516 5.751586 GATTAGGATCCAACCAACAACCTA 58.248 41.667 15.82 0.00 0.00 3.08
2031 2517 3.721087 AGGATCCAACCAACAACCTAG 57.279 47.619 15.82 0.00 0.00 3.02
2032 2518 2.308866 AGGATCCAACCAACAACCTAGG 59.691 50.000 15.82 7.41 0.00 3.02
2033 2519 2.307686 GGATCCAACCAACAACCTAGGA 59.692 50.000 17.98 0.00 0.00 2.94
2034 2520 3.053619 GGATCCAACCAACAACCTAGGAT 60.054 47.826 17.98 0.00 37.12 3.24
2035 2521 4.569865 GGATCCAACCAACAACCTAGGATT 60.570 45.833 17.98 3.06 34.73 3.01
2037 2523 2.825532 CCAACCAACAACCTAGGATTGG 59.174 50.000 28.05 28.05 45.91 3.16
2038 2524 3.499563 CCAACCAACAACCTAGGATTGGA 60.500 47.826 32.62 0.00 43.66 3.53
2039 2525 4.344104 CAACCAACAACCTAGGATTGGAT 58.656 43.478 32.62 24.71 43.66 3.41
2040 2526 3.968265 ACCAACAACCTAGGATTGGATG 58.032 45.455 32.62 24.11 43.66 3.51
2041 2527 3.591527 ACCAACAACCTAGGATTGGATGA 59.408 43.478 32.62 0.00 43.66 2.92
2042 2528 3.947834 CCAACAACCTAGGATTGGATGAC 59.052 47.826 26.84 0.00 43.66 3.06
2043 2529 4.567537 CCAACAACCTAGGATTGGATGACA 60.568 45.833 26.84 0.00 43.66 3.58
2047 2533 4.280789 ACCTAGGATTGGATGACAGGTA 57.719 45.455 17.98 0.00 33.23 3.08
2079 2761 4.321675 CCAACCCCTACAACTAAACAATGC 60.322 45.833 0.00 0.00 0.00 3.56
2082 2764 4.086457 CCCCTACAACTAAACAATGCCTT 58.914 43.478 0.00 0.00 0.00 4.35
2083 2765 5.222171 ACCCCTACAACTAAACAATGCCTTA 60.222 40.000 0.00 0.00 0.00 2.69
2084 2766 5.357032 CCCCTACAACTAAACAATGCCTTAG 59.643 44.000 2.31 2.31 0.00 2.18
2108 2790 6.035327 AGGAAAATATAAAACGAACGTCTCCG 59.965 38.462 0.00 0.00 40.83 4.63
2124 2806 3.536917 CGCCTCCGACATGCCCTA 61.537 66.667 0.00 0.00 36.29 3.53
2164 2846 4.238669 AGCAGAGCCTCTAAATTCCCTAT 58.761 43.478 0.00 0.00 0.00 2.57
2168 2850 2.303311 AGCCTCTAAATTCCCTATCCGC 59.697 50.000 0.00 0.00 0.00 5.54
2169 2851 2.038557 GCCTCTAAATTCCCTATCCGCA 59.961 50.000 0.00 0.00 0.00 5.69
2205 2887 6.087522 TGATTCGCCCTAAAACAATTTTACG 58.912 36.000 0.00 0.00 34.19 3.18
2209 2892 3.924073 GCCCTAAAACAATTTTACGCCAG 59.076 43.478 0.00 0.00 34.19 4.85
2218 2901 4.156008 ACAATTTTACGCCAGTTCATCTCC 59.844 41.667 0.00 0.00 0.00 3.71
2221 2904 1.399714 TACGCCAGTTCATCTCCGAT 58.600 50.000 0.00 0.00 0.00 4.18
2222 2905 0.179100 ACGCCAGTTCATCTCCGATG 60.179 55.000 0.00 0.00 0.00 3.84
2230 2913 2.591571 TCATCTCCGATGCAGAACAG 57.408 50.000 0.00 0.00 0.00 3.16
2234 2917 3.717400 TCTCCGATGCAGAACAGATAC 57.283 47.619 0.00 0.00 0.00 2.24
2236 2919 1.067060 TCCGATGCAGAACAGATACCG 59.933 52.381 0.00 0.00 0.00 4.02
2237 2920 1.202417 CCGATGCAGAACAGATACCGT 60.202 52.381 0.00 0.00 0.00 4.83
2244 2927 6.811253 TGCAGAACAGATACCGTAAATTTT 57.189 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 19 3.120041 GCTCTGCTTCTCCGATTAGTTC 58.880 50.000 0.00 0.00 0.00 3.01
51 53 4.258860 GCGAATAAAACAGCGGAAATTTCG 60.259 41.667 11.95 8.55 37.19 3.46
83 85 1.164662 TTATCCTCTCGAGTCCGGCG 61.165 60.000 13.13 0.00 36.24 6.46
213 578 1.449601 CCCTGTACCGTGGACATGC 60.450 63.158 0.00 0.00 0.00 4.06
297 672 4.944619 ATCGTGCAGGAAGAGATATTGA 57.055 40.909 13.87 0.00 0.00 2.57
323 698 4.214758 GCTGCAAAAATTGGCTGAGAAAAT 59.785 37.500 3.84 0.00 0.00 1.82
352 727 6.442564 TGTCCTGACCACCTATAAAATGTAGT 59.557 38.462 0.00 0.00 0.00 2.73
353 728 6.884832 TGTCCTGACCACCTATAAAATGTAG 58.115 40.000 0.00 0.00 0.00 2.74
354 729 6.126883 CCTGTCCTGACCACCTATAAAATGTA 60.127 42.308 0.00 0.00 0.00 2.29
356 731 5.104527 TCCTGTCCTGACCACCTATAAAATG 60.105 44.000 0.00 0.00 0.00 2.32
357 732 5.036916 TCCTGTCCTGACCACCTATAAAAT 58.963 41.667 0.00 0.00 0.00 1.82
358 733 4.431378 TCCTGTCCTGACCACCTATAAAA 58.569 43.478 0.00 0.00 0.00 1.52
370 745 2.111384 GAATGGCTACTCCTGTCCTGA 58.889 52.381 0.00 0.00 35.26 3.86
375 763 5.280215 GCAATATAGGAATGGCTACTCCTGT 60.280 44.000 10.72 6.17 42.25 4.00
437 825 9.874205 CAACCCAACATATAATCAAGAAATGTT 57.126 29.630 0.00 0.00 40.44 2.71
438 826 9.034800 ACAACCCAACATATAATCAAGAAATGT 57.965 29.630 0.00 0.00 32.32 2.71
456 844 3.244981 GGGTACTTGGATGTACAACCCAA 60.245 47.826 23.41 23.41 43.17 4.12
461 849 1.555992 CGGGGGTACTTGGATGTACAA 59.444 52.381 0.00 0.00 43.17 2.41
466 854 0.322997 TTTGCGGGGGTACTTGGATG 60.323 55.000 0.00 0.00 0.00 3.51
529 948 6.942532 TCCAGCCAAACAAATCTATATGTC 57.057 37.500 0.00 0.00 0.00 3.06
537 956 6.531594 GCTTTAGTATTCCAGCCAAACAAATC 59.468 38.462 0.00 0.00 0.00 2.17
539 958 5.303078 TGCTTTAGTATTCCAGCCAAACAAA 59.697 36.000 0.00 0.00 0.00 2.83
546 993 6.712547 AGAACATATGCTTTAGTATTCCAGCC 59.287 38.462 1.58 0.00 0.00 4.85
570 1017 1.466167 CCTCTCATGGCAAACGTTCAG 59.534 52.381 0.00 0.00 0.00 3.02
609 1060 3.811083 ACACTTGGAAATCGGTGTAACA 58.189 40.909 0.00 0.00 40.49 2.41
656 1108 3.190874 GCCAGGAGTCATAGAAACGAAG 58.809 50.000 0.00 0.00 0.00 3.79
657 1109 2.565391 TGCCAGGAGTCATAGAAACGAA 59.435 45.455 0.00 0.00 0.00 3.85
659 1111 2.672961 TGCCAGGAGTCATAGAAACG 57.327 50.000 0.00 0.00 0.00 3.60
660 1112 3.629398 CCATTGCCAGGAGTCATAGAAAC 59.371 47.826 0.00 0.00 0.00 2.78
693 1154 8.538701 ACCTTGTCCATCTCATATGATAGAATC 58.461 37.037 5.72 0.00 0.00 2.52
728 1189 7.041440 TCACGAGAAACAATTATCACACACATT 60.041 33.333 0.00 0.00 0.00 2.71
733 1194 9.988350 ATTATTCACGAGAAACAATTATCACAC 57.012 29.630 0.00 0.00 37.29 3.82
799 1267 5.621197 TGGACAAAGGAACATCATTAACG 57.379 39.130 0.00 0.00 0.00 3.18
823 1293 8.802267 TGGTGATAAGAGTTAATTTCCCTTTTG 58.198 33.333 0.00 0.00 0.00 2.44
843 1313 0.606401 CAGTTTGGACGGCTGGTGAT 60.606 55.000 0.00 0.00 0.00 3.06
849 1325 0.250901 AATGCTCAGTTTGGACGGCT 60.251 50.000 0.00 0.00 0.00 5.52
870 1346 3.119065 GCGGAGGCTTTATATAGGAGGAC 60.119 52.174 0.00 0.00 35.83 3.85
898 1374 0.843309 TTGTGGTGGGAAGAGAGCAA 59.157 50.000 0.00 0.00 0.00 3.91
931 1407 3.286751 CCTTGGCCGTGTGTGTGG 61.287 66.667 0.00 0.00 0.00 4.17
985 1461 2.370849 ACGACATGGTTCAAGGTTAGGT 59.629 45.455 0.00 0.00 0.00 3.08
991 1467 0.948623 TGCGACGACATGGTTCAAGG 60.949 55.000 0.00 0.00 0.00 3.61
994 1470 2.027073 GCTGCGACGACATGGTTCA 61.027 57.895 0.00 0.00 0.00 3.18
1315 1794 4.307258 CGAACACCGTACACGTGT 57.693 55.556 26.52 26.52 37.74 4.49
1405 1884 4.112341 CGGCTGCAGCAAAGCTCC 62.112 66.667 37.63 18.73 44.36 4.70
1492 1978 0.164647 CGAAGCAAGCAAAGACCTCG 59.835 55.000 0.00 0.00 0.00 4.63
1499 1985 1.909700 AGGGAATCGAAGCAAGCAAA 58.090 45.000 0.00 0.00 0.00 3.68
1561 2047 6.315393 TGAACTTTGAAGAGCTTTAAACTCGT 59.685 34.615 10.27 8.26 39.23 4.18
1582 2068 8.997621 TCAGATACACCATTAGTAGTTTGAAC 57.002 34.615 0.00 0.00 0.00 3.18
1584 2070 8.977412 TCATCAGATACACCATTAGTAGTTTGA 58.023 33.333 0.00 0.00 0.00 2.69
1586 2072 9.770097 CATCATCAGATACACCATTAGTAGTTT 57.230 33.333 0.00 0.00 31.88 2.66
1589 2075 9.770097 AAACATCATCAGATACACCATTAGTAG 57.230 33.333 0.00 0.00 31.88 2.57
1590 2076 9.764363 GAAACATCATCAGATACACCATTAGTA 57.236 33.333 0.00 0.00 31.88 1.82
1591 2077 8.267183 TGAAACATCATCAGATACACCATTAGT 58.733 33.333 0.00 0.00 31.88 2.24
1592 2078 8.554528 GTGAAACATCATCAGATACACCATTAG 58.445 37.037 0.00 0.00 36.32 1.73
1593 2079 7.498900 GGTGAAACATCATCAGATACACCATTA 59.501 37.037 0.00 0.00 39.82 1.90
1594 2080 6.319658 GGTGAAACATCATCAGATACACCATT 59.680 38.462 0.00 0.00 39.82 3.16
1595 2081 5.824624 GGTGAAACATCATCAGATACACCAT 59.175 40.000 0.00 0.00 39.82 3.55
1598 2084 6.932356 ATGGTGAAACATCATCAGATACAC 57.068 37.500 0.00 0.00 39.98 2.90
1599 2085 7.227314 GCTAATGGTGAAACATCATCAGATACA 59.773 37.037 0.00 0.00 33.68 2.29
1600 2086 7.570140 CGCTAATGGTGAAACATCATCAGATAC 60.570 40.741 0.00 0.00 33.68 2.24
1601 2087 6.424812 CGCTAATGGTGAAACATCATCAGATA 59.575 38.462 0.00 0.00 33.68 1.98
1602 2088 5.237996 CGCTAATGGTGAAACATCATCAGAT 59.762 40.000 0.00 0.00 33.68 2.90
1603 2089 4.571984 CGCTAATGGTGAAACATCATCAGA 59.428 41.667 0.00 0.00 33.68 3.27
1604 2090 4.260907 CCGCTAATGGTGAAACATCATCAG 60.261 45.833 0.00 0.00 33.68 2.90
1636 2122 1.002888 CCGGCCTCTGCATCAATAGAT 59.997 52.381 0.00 0.00 40.13 1.98
1637 2123 0.394192 CCGGCCTCTGCATCAATAGA 59.606 55.000 0.00 0.00 40.13 1.98
1638 2124 0.604780 CCCGGCCTCTGCATCAATAG 60.605 60.000 0.00 0.00 40.13 1.73
1639 2125 1.451504 CCCGGCCTCTGCATCAATA 59.548 57.895 0.00 0.00 40.13 1.90
1640 2126 2.194056 CCCGGCCTCTGCATCAAT 59.806 61.111 0.00 0.00 40.13 2.57
1641 2127 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
1643 2129 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
1654 2140 2.273588 TTAAAATCCCCGCCTCCCCG 62.274 60.000 0.00 0.00 0.00 5.73
1655 2141 0.754217 GTTAAAATCCCCGCCTCCCC 60.754 60.000 0.00 0.00 0.00 4.81
1656 2142 0.754217 GGTTAAAATCCCCGCCTCCC 60.754 60.000 0.00 0.00 0.00 4.30
1657 2143 0.257905 AGGTTAAAATCCCCGCCTCC 59.742 55.000 0.00 0.00 0.00 4.30
1658 2144 1.676746 GAGGTTAAAATCCCCGCCTC 58.323 55.000 0.00 0.00 36.21 4.70
1659 2145 0.257905 GGAGGTTAAAATCCCCGCCT 59.742 55.000 0.00 0.00 35.54 5.52
1660 2146 0.257905 AGGAGGTTAAAATCCCCGCC 59.742 55.000 4.03 0.00 38.38 6.13
1661 2147 2.139323 AAGGAGGTTAAAATCCCCGC 57.861 50.000 4.03 0.00 36.14 6.13
1662 2148 4.525100 TGAAAAAGGAGGTTAAAATCCCCG 59.475 41.667 4.03 0.00 36.14 5.73
1663 2149 6.428083 TTGAAAAAGGAGGTTAAAATCCCC 57.572 37.500 4.03 0.00 36.14 4.81
1664 2150 8.740123 TTTTTGAAAAAGGAGGTTAAAATCCC 57.260 30.769 0.00 0.00 36.14 3.85
1691 2177 7.444487 AGGACTTTCAGAGTAACGCTAATTTTT 59.556 33.333 0.00 0.00 39.19 1.94
1692 2178 6.935208 AGGACTTTCAGAGTAACGCTAATTTT 59.065 34.615 0.00 0.00 39.19 1.82
1693 2179 6.465084 AGGACTTTCAGAGTAACGCTAATTT 58.535 36.000 0.00 0.00 39.19 1.82
1694 2180 6.038997 AGGACTTTCAGAGTAACGCTAATT 57.961 37.500 0.00 0.00 39.19 1.40
1695 2181 5.662674 AGGACTTTCAGAGTAACGCTAAT 57.337 39.130 0.00 0.00 39.19 1.73
1696 2182 6.579666 TTAGGACTTTCAGAGTAACGCTAA 57.420 37.500 0.00 0.00 39.19 3.09
1697 2183 6.579666 TTTAGGACTTTCAGAGTAACGCTA 57.420 37.500 0.00 0.00 39.19 4.26
1698 2184 5.464030 TTTAGGACTTTCAGAGTAACGCT 57.536 39.130 0.00 0.00 39.19 5.07
1699 2185 6.147328 ACATTTTAGGACTTTCAGAGTAACGC 59.853 38.462 0.00 0.00 39.19 4.84
1700 2186 7.599245 AGACATTTTAGGACTTTCAGAGTAACG 59.401 37.037 0.00 0.00 39.19 3.18
1701 2187 8.834749 AGACATTTTAGGACTTTCAGAGTAAC 57.165 34.615 0.00 0.00 39.19 2.50
1702 2188 9.847224 AAAGACATTTTAGGACTTTCAGAGTAA 57.153 29.630 0.00 0.00 39.19 2.24
1703 2189 9.490379 GAAAGACATTTTAGGACTTTCAGAGTA 57.510 33.333 0.00 0.00 43.00 2.59
1704 2190 8.214364 AGAAAGACATTTTAGGACTTTCAGAGT 58.786 33.333 16.40 0.00 44.68 3.24
1705 2191 8.614469 AGAAAGACATTTTAGGACTTTCAGAG 57.386 34.615 16.40 0.00 44.68 3.35
1706 2192 8.980481 AAGAAAGACATTTTAGGACTTTCAGA 57.020 30.769 16.40 0.00 44.68 3.27
1708 2194 9.801873 CAAAAGAAAGACATTTTAGGACTTTCA 57.198 29.630 16.40 0.00 44.68 2.69
1709 2195 9.803315 ACAAAAGAAAGACATTTTAGGACTTTC 57.197 29.630 0.00 0.00 43.47 2.62
1712 2198 9.586435 CAAACAAAAGAAAGACATTTTAGGACT 57.414 29.630 0.00 0.00 0.00 3.85
1713 2199 9.366216 ACAAACAAAAGAAAGACATTTTAGGAC 57.634 29.630 0.00 0.00 0.00 3.85
1728 2214 6.541641 AGCATTATTGGCAAACAAACAAAAGA 59.458 30.769 3.01 0.00 43.46 2.52
1729 2215 6.727215 AGCATTATTGGCAAACAAACAAAAG 58.273 32.000 3.01 0.00 43.46 2.27
1733 2219 5.694006 GTGTAGCATTATTGGCAAACAAACA 59.306 36.000 3.01 0.50 43.46 2.83
1734 2220 5.120053 GGTGTAGCATTATTGGCAAACAAAC 59.880 40.000 3.01 0.00 43.46 2.93
1737 2223 4.085733 AGGTGTAGCATTATTGGCAAACA 58.914 39.130 3.01 0.00 0.00 2.83
1738 2224 4.718940 AGGTGTAGCATTATTGGCAAAC 57.281 40.909 3.01 0.00 0.00 2.93
1740 2226 3.874543 CGTAGGTGTAGCATTATTGGCAA 59.125 43.478 0.68 0.68 0.00 4.52
1741 2227 3.118555 ACGTAGGTGTAGCATTATTGGCA 60.119 43.478 0.00 0.00 0.00 4.92
1742 2228 3.247648 CACGTAGGTGTAGCATTATTGGC 59.752 47.826 7.41 0.00 39.38 4.52
1745 2231 5.163343 ACCATCACGTAGGTGTAGCATTATT 60.163 40.000 14.78 0.00 44.68 1.40
1746 2232 4.344102 ACCATCACGTAGGTGTAGCATTAT 59.656 41.667 14.78 0.00 44.68 1.28
1747 2233 3.702548 ACCATCACGTAGGTGTAGCATTA 59.297 43.478 14.78 0.00 44.68 1.90
1748 2234 2.500098 ACCATCACGTAGGTGTAGCATT 59.500 45.455 14.78 0.00 44.68 3.56
1749 2235 2.108168 ACCATCACGTAGGTGTAGCAT 58.892 47.619 14.78 0.00 44.68 3.79
1752 2238 5.320549 AGTAAACCATCACGTAGGTGTAG 57.679 43.478 14.78 8.76 44.68 2.74
1753 2239 6.832520 TTAGTAAACCATCACGTAGGTGTA 57.167 37.500 14.78 3.97 44.68 2.90
1754 2240 5.726980 TTAGTAAACCATCACGTAGGTGT 57.273 39.130 14.78 4.86 44.68 4.16
1755 2241 5.579511 CCTTTAGTAAACCATCACGTAGGTG 59.420 44.000 9.30 9.30 45.78 4.00
1756 2242 5.246883 ACCTTTAGTAAACCATCACGTAGGT 59.753 40.000 1.04 1.04 40.61 3.08
1757 2243 5.727434 ACCTTTAGTAAACCATCACGTAGG 58.273 41.667 0.00 0.00 0.00 3.18
1758 2244 7.008628 CGTAACCTTTAGTAAACCATCACGTAG 59.991 40.741 0.00 0.00 0.00 3.51
1759 2245 6.806249 CGTAACCTTTAGTAAACCATCACGTA 59.194 38.462 0.00 0.00 0.00 3.57
1760 2246 5.634859 CGTAACCTTTAGTAAACCATCACGT 59.365 40.000 0.00 0.00 0.00 4.49
1761 2247 5.634859 ACGTAACCTTTAGTAAACCATCACG 59.365 40.000 0.00 1.79 0.00 4.35
1762 2248 8.532977 TTACGTAACCTTTAGTAAACCATCAC 57.467 34.615 3.29 0.00 0.00 3.06
1763 2249 9.723601 ATTTACGTAACCTTTAGTAAACCATCA 57.276 29.630 7.70 0.00 40.43 3.07
1765 2251 9.166173 GGATTTACGTAACCTTTAGTAAACCAT 57.834 33.333 7.70 0.00 40.43 3.55
1766 2252 8.153550 TGGATTTACGTAACCTTTAGTAAACCA 58.846 33.333 7.70 1.84 40.43 3.67
1767 2253 8.546597 TGGATTTACGTAACCTTTAGTAAACC 57.453 34.615 7.70 0.00 40.43 3.27
1770 2256 9.382275 GGAATGGATTTACGTAACCTTTAGTAA 57.618 33.333 7.70 0.00 0.00 2.24
1771 2257 8.538701 TGGAATGGATTTACGTAACCTTTAGTA 58.461 33.333 7.70 0.00 0.00 1.82
1772 2258 7.335171 GTGGAATGGATTTACGTAACCTTTAGT 59.665 37.037 7.70 0.00 0.00 2.24
1773 2259 7.464977 CGTGGAATGGATTTACGTAACCTTTAG 60.465 40.741 7.70 1.95 0.00 1.85
1774 2260 6.313411 CGTGGAATGGATTTACGTAACCTTTA 59.687 38.462 7.70 0.00 0.00 1.85
1775 2261 5.122711 CGTGGAATGGATTTACGTAACCTTT 59.877 40.000 7.70 11.04 0.00 3.11
1776 2262 4.632688 CGTGGAATGGATTTACGTAACCTT 59.367 41.667 7.70 2.66 0.00 3.50
1777 2263 4.186159 CGTGGAATGGATTTACGTAACCT 58.814 43.478 7.70 0.00 0.00 3.50
1778 2264 3.242511 GCGTGGAATGGATTTACGTAACC 60.243 47.826 7.70 7.75 34.97 2.85
1779 2265 3.619929 AGCGTGGAATGGATTTACGTAAC 59.380 43.478 7.70 0.00 34.97 2.50
1780 2266 3.864243 AGCGTGGAATGGATTTACGTAA 58.136 40.909 3.29 3.29 34.97 3.18
1781 2267 3.530265 AGCGTGGAATGGATTTACGTA 57.470 42.857 0.00 0.00 34.97 3.57
1782 2268 2.396590 AGCGTGGAATGGATTTACGT 57.603 45.000 0.00 0.00 34.97 3.57
1783 2269 3.869246 AGTTAGCGTGGAATGGATTTACG 59.131 43.478 0.00 0.00 35.33 3.18
1784 2270 6.913873 TTAGTTAGCGTGGAATGGATTTAC 57.086 37.500 0.00 0.00 0.00 2.01
1785 2271 7.065324 CAGTTTAGTTAGCGTGGAATGGATTTA 59.935 37.037 0.00 0.00 0.00 1.40
1786 2272 5.944007 AGTTTAGTTAGCGTGGAATGGATTT 59.056 36.000 0.00 0.00 0.00 2.17
1787 2273 5.354234 CAGTTTAGTTAGCGTGGAATGGATT 59.646 40.000 0.00 0.00 0.00 3.01
1788 2274 4.876107 CAGTTTAGTTAGCGTGGAATGGAT 59.124 41.667 0.00 0.00 0.00 3.41
1789 2275 4.250464 CAGTTTAGTTAGCGTGGAATGGA 58.750 43.478 0.00 0.00 0.00 3.41
1790 2276 3.181510 GCAGTTTAGTTAGCGTGGAATGG 60.182 47.826 0.00 0.00 0.00 3.16
1791 2277 3.181510 GGCAGTTTAGTTAGCGTGGAATG 60.182 47.826 0.00 0.00 0.00 2.67
1792 2278 3.007635 GGCAGTTTAGTTAGCGTGGAAT 58.992 45.455 0.00 0.00 0.00 3.01
1793 2279 2.419667 GGCAGTTTAGTTAGCGTGGAA 58.580 47.619 0.00 0.00 0.00 3.53
1794 2280 1.338389 GGGCAGTTTAGTTAGCGTGGA 60.338 52.381 0.00 0.00 0.00 4.02
1795 2281 1.084289 GGGCAGTTTAGTTAGCGTGG 58.916 55.000 0.00 0.00 0.00 4.94
1796 2282 1.084289 GGGGCAGTTTAGTTAGCGTG 58.916 55.000 0.00 0.00 0.00 5.34
1797 2283 0.035725 GGGGGCAGTTTAGTTAGCGT 60.036 55.000 0.00 0.00 0.00 5.07
1798 2284 2.776659 GGGGGCAGTTTAGTTAGCG 58.223 57.895 0.00 0.00 0.00 4.26
1817 2303 1.485124 GGCCCACCCTAAAAATCAGG 58.515 55.000 0.00 0.00 0.00 3.86
1833 2319 2.830704 CTTACCTCGTCACACGGGCC 62.831 65.000 0.00 0.00 41.60 5.80
1834 2320 1.445582 CTTACCTCGTCACACGGGC 60.446 63.158 0.00 0.00 41.60 6.13
1835 2321 1.214589 CCTTACCTCGTCACACGGG 59.785 63.158 0.00 0.00 42.83 5.28
1836 2322 1.445582 GCCTTACCTCGTCACACGG 60.446 63.158 0.00 0.00 42.81 4.94
1837 2323 1.445582 GGCCTTACCTCGTCACACG 60.446 63.158 0.00 0.00 44.19 4.49
1838 2324 1.079336 GGGCCTTACCTCGTCACAC 60.079 63.158 0.84 0.00 39.10 3.82
1839 2325 1.122632 TTGGGCCTTACCTCGTCACA 61.123 55.000 4.53 0.00 39.10 3.58
1840 2326 0.252197 ATTGGGCCTTACCTCGTCAC 59.748 55.000 4.53 0.00 39.10 3.67
1841 2327 1.868713 TATTGGGCCTTACCTCGTCA 58.131 50.000 4.53 0.00 39.10 4.35
1842 2328 4.612264 TTATATTGGGCCTTACCTCGTC 57.388 45.455 4.53 0.00 39.10 4.20
1843 2329 5.578157 AATTATATTGGGCCTTACCTCGT 57.422 39.130 4.53 0.00 39.10 4.18
1844 2330 6.001460 TGAAATTATATTGGGCCTTACCTCG 58.999 40.000 4.53 0.00 39.10 4.63
1845 2331 6.208797 GGTGAAATTATATTGGGCCTTACCTC 59.791 42.308 4.53 0.00 39.10 3.85
1846 2332 6.075315 GGTGAAATTATATTGGGCCTTACCT 58.925 40.000 4.53 0.00 39.10 3.08
1847 2333 5.836358 TGGTGAAATTATATTGGGCCTTACC 59.164 40.000 4.53 0.00 37.93 2.85
1848 2334 6.514376 CGTGGTGAAATTATATTGGGCCTTAC 60.514 42.308 4.53 0.00 0.00 2.34
1849 2335 5.533154 CGTGGTGAAATTATATTGGGCCTTA 59.467 40.000 4.53 0.00 0.00 2.69
1850 2336 4.340950 CGTGGTGAAATTATATTGGGCCTT 59.659 41.667 4.53 0.00 0.00 4.35
1851 2337 3.888930 CGTGGTGAAATTATATTGGGCCT 59.111 43.478 4.53 0.00 0.00 5.19
1852 2338 3.634910 ACGTGGTGAAATTATATTGGGCC 59.365 43.478 0.00 0.00 0.00 5.80
1853 2339 4.553938 CGACGTGGTGAAATTATATTGGGC 60.554 45.833 0.00 0.00 0.00 5.36
1854 2340 4.024387 CCGACGTGGTGAAATTATATTGGG 60.024 45.833 0.00 0.00 0.00 4.12
1855 2341 4.812091 TCCGACGTGGTGAAATTATATTGG 59.188 41.667 0.00 0.00 39.52 3.16
1856 2342 5.977171 TCCGACGTGGTGAAATTATATTG 57.023 39.130 0.00 0.00 39.52 1.90
1857 2343 5.049680 GCATCCGACGTGGTGAAATTATATT 60.050 40.000 0.00 0.00 39.52 1.28
1858 2344 4.451096 GCATCCGACGTGGTGAAATTATAT 59.549 41.667 0.00 0.00 39.52 0.86
1859 2345 3.805422 GCATCCGACGTGGTGAAATTATA 59.195 43.478 0.00 0.00 39.52 0.98
1860 2346 2.612212 GCATCCGACGTGGTGAAATTAT 59.388 45.455 0.00 0.00 39.52 1.28
1861 2347 2.004017 GCATCCGACGTGGTGAAATTA 58.996 47.619 0.00 0.00 39.52 1.40
1862 2348 0.802494 GCATCCGACGTGGTGAAATT 59.198 50.000 0.00 0.00 39.52 1.82
1863 2349 0.036388 AGCATCCGACGTGGTGAAAT 60.036 50.000 0.00 0.00 39.52 2.17
1864 2350 0.604073 TAGCATCCGACGTGGTGAAA 59.396 50.000 0.00 0.00 39.52 2.69
1865 2351 0.108992 GTAGCATCCGACGTGGTGAA 60.109 55.000 0.00 0.00 39.52 3.18
1866 2352 1.509463 GTAGCATCCGACGTGGTGA 59.491 57.895 0.00 0.00 39.52 4.02
1867 2353 1.872234 CGTAGCATCCGACGTGGTG 60.872 63.158 0.00 0.00 39.52 4.17
1868 2354 2.488355 CGTAGCATCCGACGTGGT 59.512 61.111 0.00 0.00 39.52 4.16
1872 2358 0.379669 ACCTTACGTAGCATCCGACG 59.620 55.000 0.00 0.00 44.20 5.12
1873 2359 2.031333 CCTACCTTACGTAGCATCCGAC 60.031 54.545 0.00 0.00 42.85 4.79
1874 2360 2.224606 CCTACCTTACGTAGCATCCGA 58.775 52.381 0.00 0.00 42.85 4.55
1875 2361 1.952296 ACCTACCTTACGTAGCATCCG 59.048 52.381 0.00 0.00 42.85 4.18
1876 2362 4.392940 TCTACCTACCTTACGTAGCATCC 58.607 47.826 0.00 0.00 42.85 3.51
1877 2363 6.382869 TTTCTACCTACCTTACGTAGCATC 57.617 41.667 0.00 0.00 42.85 3.91
1878 2364 6.015603 GGATTTCTACCTACCTTACGTAGCAT 60.016 42.308 0.00 0.00 42.85 3.79
1879 2365 5.300286 GGATTTCTACCTACCTTACGTAGCA 59.700 44.000 0.00 0.00 42.85 3.49
1880 2366 5.534278 AGGATTTCTACCTACCTTACGTAGC 59.466 44.000 0.00 0.00 42.85 3.58
1881 2367 7.579761 AAGGATTTCTACCTACCTTACGTAG 57.420 40.000 0.00 0.00 43.68 3.51
1882 2368 8.451908 GTAAGGATTTCTACCTACCTTACGTA 57.548 38.462 15.30 0.00 46.62 3.57
1883 2369 7.340122 GTAAGGATTTCTACCTACCTTACGT 57.660 40.000 15.30 0.00 46.62 3.57
1886 2372 9.125026 CTTACGTAAGGATTTCTACCTACCTTA 57.875 37.037 24.73 0.00 46.39 2.69
1887 2373 7.617329 ACTTACGTAAGGATTTCTACCTACCTT 59.383 37.037 32.63 8.45 46.39 3.50
1888 2374 7.067981 CACTTACGTAAGGATTTCTACCTACCT 59.932 40.741 32.63 8.79 46.39 3.08
1889 2375 7.148000 ACACTTACGTAAGGATTTCTACCTACC 60.148 40.741 32.63 0.00 46.39 3.18
1890 2376 7.766283 ACACTTACGTAAGGATTTCTACCTAC 58.234 38.462 32.63 0.00 46.39 3.18
1891 2377 7.944729 ACACTTACGTAAGGATTTCTACCTA 57.055 36.000 32.63 0.00 46.39 3.08
1892 2378 6.847421 ACACTTACGTAAGGATTTCTACCT 57.153 37.500 32.63 10.43 46.39 3.08
1893 2379 6.694844 GCTACACTTACGTAAGGATTTCTACC 59.305 42.308 32.63 12.43 46.39 3.18
1894 2380 7.253422 TGCTACACTTACGTAAGGATTTCTAC 58.747 38.462 32.63 17.31 46.39 2.59
1895 2381 7.395190 TGCTACACTTACGTAAGGATTTCTA 57.605 36.000 32.63 14.69 46.39 2.10
1896 2382 6.276832 TGCTACACTTACGTAAGGATTTCT 57.723 37.500 32.63 13.08 46.39 2.52
1897 2383 6.755141 TGATGCTACACTTACGTAAGGATTTC 59.245 38.462 32.63 20.55 46.39 2.17
1898 2384 6.534079 GTGATGCTACACTTACGTAAGGATTT 59.466 38.462 32.63 18.60 38.64 2.17
1899 2385 6.040878 GTGATGCTACACTTACGTAAGGATT 58.959 40.000 32.63 20.68 38.64 3.01
1900 2386 5.126545 TGTGATGCTACACTTACGTAAGGAT 59.873 40.000 32.63 23.65 40.88 3.24
1901 2387 4.460034 TGTGATGCTACACTTACGTAAGGA 59.540 41.667 32.63 19.30 40.88 3.36
1902 2388 4.561606 GTGTGATGCTACACTTACGTAAGG 59.438 45.833 32.63 24.37 45.70 2.69
1903 2389 5.682049 GTGTGATGCTACACTTACGTAAG 57.318 43.478 29.27 29.27 45.70 2.34
1913 2399 2.353704 GGTACAGCTGTGTGATGCTACA 60.354 50.000 29.57 1.60 37.52 2.74
1914 2400 2.271800 GGTACAGCTGTGTGATGCTAC 58.728 52.381 29.57 15.92 37.52 3.58
1915 2401 1.207089 GGGTACAGCTGTGTGATGCTA 59.793 52.381 29.57 3.27 37.52 3.49
1916 2402 0.036010 GGGTACAGCTGTGTGATGCT 60.036 55.000 29.57 1.61 37.52 3.79
1917 2403 0.321564 TGGGTACAGCTGTGTGATGC 60.322 55.000 29.57 11.38 37.52 3.91
1918 2404 2.408271 ATGGGTACAGCTGTGTGATG 57.592 50.000 29.57 0.00 37.52 3.07
1919 2405 3.678806 CGTTATGGGTACAGCTGTGTGAT 60.679 47.826 29.57 16.64 37.52 3.06
1920 2406 2.353307 CGTTATGGGTACAGCTGTGTGA 60.353 50.000 29.57 6.67 37.52 3.58
1921 2407 1.999735 CGTTATGGGTACAGCTGTGTG 59.000 52.381 29.57 0.00 37.52 3.82
1922 2408 1.621814 ACGTTATGGGTACAGCTGTGT 59.378 47.619 29.57 12.08 41.06 3.72
1923 2409 1.999735 CACGTTATGGGTACAGCTGTG 59.000 52.381 29.57 11.40 0.00 3.66
1924 2410 1.897133 TCACGTTATGGGTACAGCTGT 59.103 47.619 25.12 25.12 0.00 4.40
1925 2411 2.665649 TCACGTTATGGGTACAGCTG 57.334 50.000 13.48 13.48 0.00 4.24
1926 2412 3.688694 TTTCACGTTATGGGTACAGCT 57.311 42.857 0.00 0.00 0.00 4.24
1927 2413 4.752661 TTTTTCACGTTATGGGTACAGC 57.247 40.909 0.00 0.00 0.00 4.40
1945 2431 3.570912 TCTGAACGGTCCCTTCTTTTT 57.429 42.857 0.00 0.00 0.00 1.94
1946 2432 3.412386 CATCTGAACGGTCCCTTCTTTT 58.588 45.455 0.00 0.00 0.00 2.27
1947 2433 2.876079 GCATCTGAACGGTCCCTTCTTT 60.876 50.000 0.00 0.00 0.00 2.52
1948 2434 1.339151 GCATCTGAACGGTCCCTTCTT 60.339 52.381 0.00 0.00 0.00 2.52
1949 2435 0.250513 GCATCTGAACGGTCCCTTCT 59.749 55.000 0.00 0.00 0.00 2.85
1950 2436 0.744771 GGCATCTGAACGGTCCCTTC 60.745 60.000 0.00 0.00 0.00 3.46
1951 2437 1.201429 AGGCATCTGAACGGTCCCTT 61.201 55.000 0.00 0.00 0.00 3.95
1952 2438 0.325296 TAGGCATCTGAACGGTCCCT 60.325 55.000 0.00 0.00 0.00 4.20
1953 2439 0.759346 ATAGGCATCTGAACGGTCCC 59.241 55.000 0.00 0.00 0.00 4.46
1954 2440 2.103263 AGAATAGGCATCTGAACGGTCC 59.897 50.000 0.00 0.00 0.00 4.46
1955 2441 3.460857 AGAATAGGCATCTGAACGGTC 57.539 47.619 0.00 0.00 0.00 4.79
1956 2442 3.914426 AAGAATAGGCATCTGAACGGT 57.086 42.857 0.00 0.00 0.00 4.83
1957 2443 5.817816 ACTAAAAGAATAGGCATCTGAACGG 59.182 40.000 0.00 0.00 0.00 4.44
1958 2444 6.910536 ACTAAAAGAATAGGCATCTGAACG 57.089 37.500 0.00 0.00 0.00 3.95
1959 2445 8.730680 TGAAACTAAAAGAATAGGCATCTGAAC 58.269 33.333 0.00 0.00 0.00 3.18
1960 2446 8.862325 TGAAACTAAAAGAATAGGCATCTGAA 57.138 30.769 0.00 0.00 0.00 3.02
1961 2447 8.862325 TTGAAACTAAAAGAATAGGCATCTGA 57.138 30.769 0.00 0.00 0.00 3.27
1962 2448 9.727627 GATTGAAACTAAAAGAATAGGCATCTG 57.272 33.333 0.00 0.00 0.00 2.90
1963 2449 8.616076 CGATTGAAACTAAAAGAATAGGCATCT 58.384 33.333 0.00 0.00 0.00 2.90
1964 2450 8.612619 TCGATTGAAACTAAAAGAATAGGCATC 58.387 33.333 0.00 0.00 0.00 3.91
1965 2451 8.506168 TCGATTGAAACTAAAAGAATAGGCAT 57.494 30.769 0.00 0.00 0.00 4.40
1966 2452 7.915293 TCGATTGAAACTAAAAGAATAGGCA 57.085 32.000 0.00 0.00 0.00 4.75
1967 2453 7.794349 CGATCGATTGAAACTAAAAGAATAGGC 59.206 37.037 10.26 0.00 0.00 3.93
1968 2454 7.794349 GCGATCGATTGAAACTAAAAGAATAGG 59.206 37.037 21.57 0.00 0.00 2.57
1969 2455 8.543774 AGCGATCGATTGAAACTAAAAGAATAG 58.456 33.333 21.57 0.00 0.00 1.73
1970 2456 8.420374 AGCGATCGATTGAAACTAAAAGAATA 57.580 30.769 21.57 0.00 0.00 1.75
1971 2457 7.064609 TGAGCGATCGATTGAAACTAAAAGAAT 59.935 33.333 21.57 0.00 0.00 2.40
1972 2458 6.367695 TGAGCGATCGATTGAAACTAAAAGAA 59.632 34.615 21.57 0.00 0.00 2.52
1973 2459 5.867174 TGAGCGATCGATTGAAACTAAAAGA 59.133 36.000 21.57 0.00 0.00 2.52
1974 2460 5.954349 GTGAGCGATCGATTGAAACTAAAAG 59.046 40.000 21.57 0.00 0.00 2.27
2025 2511 3.464828 ACCTGTCATCCAATCCTAGGTT 58.535 45.455 9.08 0.00 33.53 3.50
2026 2512 3.136641 ACCTGTCATCCAATCCTAGGT 57.863 47.619 9.08 0.00 32.52 3.08
2027 2513 3.580458 CCTACCTGTCATCCAATCCTAGG 59.420 52.174 0.82 0.82 0.00 3.02
2028 2514 4.483950 TCCTACCTGTCATCCAATCCTAG 58.516 47.826 0.00 0.00 0.00 3.02
2029 2515 4.552883 TCCTACCTGTCATCCAATCCTA 57.447 45.455 0.00 0.00 0.00 2.94
2030 2516 3.421394 TCCTACCTGTCATCCAATCCT 57.579 47.619 0.00 0.00 0.00 3.24
2031 2517 3.648067 TGATCCTACCTGTCATCCAATCC 59.352 47.826 0.00 0.00 0.00 3.01
2032 2518 4.963318 TGATCCTACCTGTCATCCAATC 57.037 45.455 0.00 0.00 0.00 2.67
2033 2519 4.141390 GGTTGATCCTACCTGTCATCCAAT 60.141 45.833 6.81 0.00 33.79 3.16
2034 2520 3.199946 GGTTGATCCTACCTGTCATCCAA 59.800 47.826 6.81 0.00 33.79 3.53
2035 2521 2.771943 GGTTGATCCTACCTGTCATCCA 59.228 50.000 6.81 0.00 33.79 3.41
2037 2523 2.771943 TGGGTTGATCCTACCTGTCATC 59.228 50.000 12.37 0.00 35.92 2.92
2038 2524 2.845659 TGGGTTGATCCTACCTGTCAT 58.154 47.619 12.37 0.00 35.92 3.06
2039 2525 2.304761 GTTGGGTTGATCCTACCTGTCA 59.695 50.000 12.37 2.10 35.92 3.58
2040 2526 2.355818 GGTTGGGTTGATCCTACCTGTC 60.356 54.545 12.37 4.99 45.22 3.51
2041 2527 1.633945 GGTTGGGTTGATCCTACCTGT 59.366 52.381 12.37 0.00 45.22 4.00
2042 2528 1.064685 GGGTTGGGTTGATCCTACCTG 60.065 57.143 12.58 0.00 46.94 4.00
2043 2529 1.296002 GGGTTGGGTTGATCCTACCT 58.704 55.000 12.58 0.00 46.94 3.08
2047 2533 1.296002 GTAGGGGTTGGGTTGATCCT 58.704 55.000 0.00 0.00 36.25 3.24
2079 2761 8.876790 AGACGTTCGTTTTATATTTTCCTAAGG 58.123 33.333 0.00 0.00 0.00 2.69
2082 2764 8.411318 GGAGACGTTCGTTTTATATTTTCCTA 57.589 34.615 0.00 0.00 0.00 2.94
2083 2765 7.299787 GGAGACGTTCGTTTTATATTTTCCT 57.700 36.000 0.00 0.00 0.00 3.36
2108 2790 2.423446 CTAGGGCATGTCGGAGGC 59.577 66.667 0.00 0.00 0.00 4.70
2117 2799 3.247424 TGCTCTTAGGCTAGGGCAT 57.753 52.632 12.57 0.00 46.36 4.40
2146 2828 3.617775 GCGGATAGGGAATTTAGAGGCTC 60.618 52.174 6.34 6.34 0.00 4.70
2205 2887 0.462581 TGCATCGGAGATGAACTGGC 60.463 55.000 13.56 0.00 45.12 4.85
2209 2892 2.606725 CTGTTCTGCATCGGAGATGAAC 59.393 50.000 13.56 9.38 45.12 3.18
2218 2901 2.209838 ACGGTATCTGTTCTGCATCG 57.790 50.000 0.00 0.00 0.00 3.84
2221 2904 6.811253 AAAATTTACGGTATCTGTTCTGCA 57.189 33.333 0.00 0.00 0.00 4.41
2222 2905 9.615295 TTTTAAAATTTACGGTATCTGTTCTGC 57.385 29.630 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.