Multiple sequence alignment - TraesCS1D01G285800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G285800 chr1D 100.000 2558 0 0 1 2558 383761478 383758921 0.000000e+00 4724.0
1 TraesCS1D01G285800 chr1D 85.135 74 7 4 14 84 473731834 473731906 3.530000e-09 73.1
2 TraesCS1D01G285800 chr1A 94.398 2053 76 20 529 2558 483679667 483677631 0.000000e+00 3118.0
3 TraesCS1D01G285800 chr1B 91.440 1542 86 28 551 2074 514818645 514817132 0.000000e+00 2074.0
4 TraesCS1D01G285800 chr1B 93.000 400 23 4 2160 2558 514816140 514815745 1.710000e-161 579.0
5 TraesCS1D01G285800 chr4B 90.052 191 15 4 1025 1213 436098506 436098694 7.070000e-61 244.0
6 TraesCS1D01G285800 chr4B 83.152 184 27 3 1294 1475 41744015 41744196 5.660000e-37 165.0
7 TraesCS1D01G285800 chr4A 88.406 207 17 6 1012 1216 112847015 112846814 2.540000e-60 243.0
8 TraesCS1D01G285800 chr4A 88.235 204 17 6 1012 1213 112853364 112853166 1.180000e-58 237.0
9 TraesCS1D01G285800 chr4A 78.992 119 15 10 332 445 542992331 542992218 3.530000e-09 73.1
10 TraesCS1D01G285800 chr7D 87.324 213 19 8 1003 1213 548709087 548709293 1.180000e-58 237.0
11 TraesCS1D01G285800 chr7D 87.264 212 19 8 1003 1212 548697182 548697387 4.250000e-58 235.0
12 TraesCS1D01G285800 chr7D 85.514 214 28 3 1289 1501 617735497 617735286 1.190000e-53 220.0
13 TraesCS1D01G285800 chr7B 86.854 213 20 7 1003 1213 591949546 591949752 5.500000e-57 231.0
14 TraesCS1D01G285800 chr7B 86.385 213 21 8 1003 1213 591713473 591713679 2.560000e-55 226.0
15 TraesCS1D01G285800 chr7B 84.579 214 30 3 1289 1501 711755859 711755648 2.580000e-50 209.0
16 TraesCS1D01G285800 chr7A 88.360 189 19 3 1289 1476 711583414 711583228 9.210000e-55 224.0
17 TraesCS1D01G285800 chr7A 86.127 173 24 0 1296 1468 100064019 100064191 1.210000e-43 187.0
18 TraesCS1D01G285800 chr5A 82.403 233 38 3 1296 1528 644310689 644310918 1.550000e-47 200.0
19 TraesCS1D01G285800 chr4D 83.696 184 26 3 1294 1475 29177023 29177204 1.220000e-38 171.0
20 TraesCS1D01G285800 chr3B 79.381 97 14 5 179 272 143154598 143154691 2.120000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G285800 chr1D 383758921 383761478 2557 True 4724.0 4724 100.000 1 2558 1 chr1D.!!$R1 2557
1 TraesCS1D01G285800 chr1A 483677631 483679667 2036 True 3118.0 3118 94.398 529 2558 1 chr1A.!!$R1 2029
2 TraesCS1D01G285800 chr1B 514815745 514818645 2900 True 1326.5 2074 92.220 551 2558 2 chr1B.!!$R1 2007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 467 0.040067 GCGTCAAAAGTGCCCTTGAG 60.04 55.0 0.0 0.0 32.36 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 2130 0.107263 TTCAACAGCACAGCCACTCA 60.107 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.009888 GCACAGTTATGCCTCTCGC 58.990 57.895 0.00 0.00 39.86 5.03
30 31 2.743060 TGCCTCTCGCAGAAGCAA 59.257 55.556 6.89 0.00 44.64 3.91
31 32 1.071299 TGCCTCTCGCAGAAGCAAA 59.929 52.632 6.89 0.00 44.64 3.68
32 33 0.321919 TGCCTCTCGCAGAAGCAAAT 60.322 50.000 6.89 0.00 44.64 2.32
33 34 0.807496 GCCTCTCGCAGAAGCAAATT 59.193 50.000 2.95 0.00 42.27 1.82
34 35 1.200948 GCCTCTCGCAGAAGCAAATTT 59.799 47.619 2.95 0.00 42.27 1.82
35 36 2.860062 CCTCTCGCAGAAGCAAATTTG 58.140 47.619 14.03 14.03 42.27 2.32
46 47 1.271876 GCAAATTTGCGCCTCTAAGC 58.728 50.000 26.15 0.72 45.11 3.09
67 68 4.488126 CGAAGCAAATTTGTTCCTCTCA 57.512 40.909 19.03 0.00 0.00 3.27
68 69 4.222114 CGAAGCAAATTTGTTCCTCTCAC 58.778 43.478 19.03 0.00 0.00 3.51
69 70 3.904136 AGCAAATTTGTTCCTCTCACG 57.096 42.857 19.03 0.00 0.00 4.35
70 71 2.554032 AGCAAATTTGTTCCTCTCACGG 59.446 45.455 19.03 0.00 0.00 4.94
71 72 2.552315 GCAAATTTGTTCCTCTCACGGA 59.448 45.455 19.03 0.00 0.00 4.69
72 73 3.004315 GCAAATTTGTTCCTCTCACGGAA 59.996 43.478 19.03 0.00 40.64 4.30
73 74 4.787598 CAAATTTGTTCCTCTCACGGAAG 58.212 43.478 10.15 0.00 43.37 3.46
74 75 4.351874 AATTTGTTCCTCTCACGGAAGA 57.648 40.909 0.00 0.00 43.37 2.87
75 76 3.830744 TTTGTTCCTCTCACGGAAGAA 57.169 42.857 0.00 0.00 43.37 2.52
76 77 3.830744 TTGTTCCTCTCACGGAAGAAA 57.169 42.857 0.33 0.00 41.61 2.52
77 78 3.830744 TGTTCCTCTCACGGAAGAAAA 57.169 42.857 0.00 0.00 43.37 2.29
78 79 4.145365 TGTTCCTCTCACGGAAGAAAAA 57.855 40.909 0.00 0.00 43.37 1.94
105 106 9.908152 AAATACATTTTTCTCTTTTCGTTAGGG 57.092 29.630 0.00 0.00 0.00 3.53
106 107 5.769367 ACATTTTTCTCTTTTCGTTAGGGC 58.231 37.500 0.00 0.00 0.00 5.19
107 108 5.300792 ACATTTTTCTCTTTTCGTTAGGGCA 59.699 36.000 0.00 0.00 0.00 5.36
108 109 5.432885 TTTTTCTCTTTTCGTTAGGGCAG 57.567 39.130 0.00 0.00 0.00 4.85
109 110 2.094762 TCTCTTTTCGTTAGGGCAGC 57.905 50.000 0.00 0.00 0.00 5.25
110 111 1.623811 TCTCTTTTCGTTAGGGCAGCT 59.376 47.619 0.00 0.00 0.00 4.24
111 112 1.734465 CTCTTTTCGTTAGGGCAGCTG 59.266 52.381 10.11 10.11 0.00 4.24
112 113 1.071699 TCTTTTCGTTAGGGCAGCTGT 59.928 47.619 16.64 0.00 0.00 4.40
113 114 2.300723 TCTTTTCGTTAGGGCAGCTGTA 59.699 45.455 16.64 0.00 0.00 2.74
114 115 2.088950 TTTCGTTAGGGCAGCTGTAC 57.911 50.000 16.64 8.81 0.00 2.90
115 116 0.248289 TTCGTTAGGGCAGCTGTACC 59.752 55.000 16.64 17.68 0.00 3.34
116 117 0.613853 TCGTTAGGGCAGCTGTACCT 60.614 55.000 27.54 27.54 38.40 3.08
117 118 0.249398 CGTTAGGGCAGCTGTACCTT 59.751 55.000 28.93 16.46 35.84 3.50
118 119 1.338769 CGTTAGGGCAGCTGTACCTTT 60.339 52.381 28.93 14.33 35.84 3.11
119 120 2.791655 GTTAGGGCAGCTGTACCTTTT 58.208 47.619 28.93 13.75 35.84 2.27
120 121 2.488153 GTTAGGGCAGCTGTACCTTTTG 59.512 50.000 28.93 0.00 35.84 2.44
121 122 0.478507 AGGGCAGCTGTACCTTTTGT 59.521 50.000 21.76 4.78 0.00 2.83
122 123 0.598065 GGGCAGCTGTACCTTTTGTG 59.402 55.000 16.64 0.00 0.00 3.33
123 124 1.604604 GGCAGCTGTACCTTTTGTGA 58.395 50.000 16.64 0.00 0.00 3.58
124 125 1.953686 GGCAGCTGTACCTTTTGTGAA 59.046 47.619 16.64 0.00 0.00 3.18
125 126 2.360801 GGCAGCTGTACCTTTTGTGAAA 59.639 45.455 16.64 0.00 0.00 2.69
126 127 3.550842 GGCAGCTGTACCTTTTGTGAAAG 60.551 47.826 16.64 0.00 41.56 2.62
127 128 3.632189 CAGCTGTACCTTTTGTGAAAGC 58.368 45.455 5.25 0.00 40.75 3.51
128 129 3.066621 CAGCTGTACCTTTTGTGAAAGCA 59.933 43.478 5.25 0.00 40.75 3.91
129 130 3.699038 AGCTGTACCTTTTGTGAAAGCAA 59.301 39.130 0.00 0.00 40.75 3.91
130 131 4.159506 AGCTGTACCTTTTGTGAAAGCAAA 59.840 37.500 0.00 0.00 40.75 3.68
131 132 4.267690 GCTGTACCTTTTGTGAAAGCAAAC 59.732 41.667 0.00 0.00 40.75 2.93
132 133 4.749976 TGTACCTTTTGTGAAAGCAAACC 58.250 39.130 0.00 0.00 40.75 3.27
133 134 4.464597 TGTACCTTTTGTGAAAGCAAACCT 59.535 37.500 0.00 0.00 40.75 3.50
134 135 3.860641 ACCTTTTGTGAAAGCAAACCTG 58.139 40.909 0.00 0.00 40.75 4.00
135 136 3.260632 ACCTTTTGTGAAAGCAAACCTGT 59.739 39.130 0.00 0.00 40.75 4.00
136 137 4.464597 ACCTTTTGTGAAAGCAAACCTGTA 59.535 37.500 0.00 0.00 40.75 2.74
137 138 4.803613 CCTTTTGTGAAAGCAAACCTGTAC 59.196 41.667 0.00 0.00 40.75 2.90
138 139 4.379339 TTTGTGAAAGCAAACCTGTACC 57.621 40.909 0.00 0.00 33.91 3.34
139 140 3.290948 TGTGAAAGCAAACCTGTACCT 57.709 42.857 0.00 0.00 0.00 3.08
140 141 3.626930 TGTGAAAGCAAACCTGTACCTT 58.373 40.909 0.00 0.00 0.00 3.50
141 142 3.630312 TGTGAAAGCAAACCTGTACCTTC 59.370 43.478 0.00 0.00 0.00 3.46
142 143 3.630312 GTGAAAGCAAACCTGTACCTTCA 59.370 43.478 0.00 0.00 0.00 3.02
143 144 4.278419 GTGAAAGCAAACCTGTACCTTCAT 59.722 41.667 0.00 0.00 0.00 2.57
144 145 4.278170 TGAAAGCAAACCTGTACCTTCATG 59.722 41.667 0.00 0.00 0.00 3.07
145 146 3.788227 AGCAAACCTGTACCTTCATGA 57.212 42.857 0.00 0.00 0.00 3.07
146 147 3.679389 AGCAAACCTGTACCTTCATGAG 58.321 45.455 0.00 0.00 0.00 2.90
147 148 3.327757 AGCAAACCTGTACCTTCATGAGA 59.672 43.478 0.00 0.00 0.00 3.27
148 149 4.072131 GCAAACCTGTACCTTCATGAGAA 58.928 43.478 0.00 0.00 0.00 2.87
182 183 2.159327 TTTCCGTTTCCGAAGTCTCC 57.841 50.000 0.00 0.00 35.63 3.71
183 184 0.319405 TTCCGTTTCCGAAGTCTCCC 59.681 55.000 0.00 0.00 35.63 4.30
184 185 1.445582 CCGTTTCCGAAGTCTCCCG 60.446 63.158 0.00 0.00 35.63 5.14
185 186 1.288127 CGTTTCCGAAGTCTCCCGT 59.712 57.895 0.00 0.00 35.63 5.28
186 187 1.007336 CGTTTCCGAAGTCTCCCGTG 61.007 60.000 0.00 0.00 35.63 4.94
187 188 0.316204 GTTTCCGAAGTCTCCCGTGA 59.684 55.000 0.00 0.00 0.00 4.35
188 189 1.042229 TTTCCGAAGTCTCCCGTGAA 58.958 50.000 0.00 0.00 0.00 3.18
189 190 1.042229 TTCCGAAGTCTCCCGTGAAA 58.958 50.000 0.00 0.00 0.00 2.69
190 191 1.042229 TCCGAAGTCTCCCGTGAAAA 58.958 50.000 0.00 0.00 0.00 2.29
191 192 1.413445 TCCGAAGTCTCCCGTGAAAAA 59.587 47.619 0.00 0.00 0.00 1.94
192 193 1.798813 CCGAAGTCTCCCGTGAAAAAG 59.201 52.381 0.00 0.00 0.00 2.27
193 194 2.547218 CCGAAGTCTCCCGTGAAAAAGA 60.547 50.000 0.00 0.00 0.00 2.52
194 195 3.128349 CGAAGTCTCCCGTGAAAAAGAA 58.872 45.455 0.00 0.00 0.00 2.52
195 196 3.746492 CGAAGTCTCCCGTGAAAAAGAAT 59.254 43.478 0.00 0.00 0.00 2.40
196 197 4.143094 CGAAGTCTCCCGTGAAAAAGAATC 60.143 45.833 0.00 0.00 0.00 2.52
197 198 4.625607 AGTCTCCCGTGAAAAAGAATCT 57.374 40.909 0.00 0.00 0.00 2.40
198 199 4.319177 AGTCTCCCGTGAAAAAGAATCTG 58.681 43.478 0.00 0.00 0.00 2.90
199 200 4.065789 GTCTCCCGTGAAAAAGAATCTGT 58.934 43.478 0.00 0.00 0.00 3.41
200 201 4.065088 TCTCCCGTGAAAAAGAATCTGTG 58.935 43.478 0.00 0.00 0.00 3.66
201 202 2.552315 TCCCGTGAAAAAGAATCTGTGC 59.448 45.455 0.00 0.00 0.00 4.57
202 203 2.351738 CCCGTGAAAAAGAATCTGTGCC 60.352 50.000 0.00 0.00 0.00 5.01
203 204 2.554032 CCGTGAAAAAGAATCTGTGCCT 59.446 45.455 0.00 0.00 0.00 4.75
204 205 3.365364 CCGTGAAAAAGAATCTGTGCCTC 60.365 47.826 0.00 0.00 0.00 4.70
205 206 3.365364 CGTGAAAAAGAATCTGTGCCTCC 60.365 47.826 0.00 0.00 0.00 4.30
206 207 3.569701 GTGAAAAAGAATCTGTGCCTCCA 59.430 43.478 0.00 0.00 0.00 3.86
207 208 3.822735 TGAAAAAGAATCTGTGCCTCCAG 59.177 43.478 0.00 0.00 0.00 3.86
208 209 2.503895 AAAGAATCTGTGCCTCCAGG 57.496 50.000 0.00 0.00 38.53 4.45
209 210 1.661463 AAGAATCTGTGCCTCCAGGA 58.339 50.000 0.00 0.00 37.39 3.86
210 211 1.202330 AGAATCTGTGCCTCCAGGAG 58.798 55.000 9.90 9.90 37.39 3.69
211 212 1.198713 GAATCTGTGCCTCCAGGAGA 58.801 55.000 19.21 0.00 37.39 3.71
212 213 1.556911 GAATCTGTGCCTCCAGGAGAA 59.443 52.381 19.21 2.65 37.39 2.87
213 214 1.202330 ATCTGTGCCTCCAGGAGAAG 58.798 55.000 19.21 9.67 37.39 2.85
214 215 1.078567 CTGTGCCTCCAGGAGAAGC 60.079 63.158 19.21 14.07 37.39 3.86
215 216 1.834856 CTGTGCCTCCAGGAGAAGCA 61.835 60.000 19.21 16.61 37.39 3.91
216 217 1.376466 GTGCCTCCAGGAGAAGCAA 59.624 57.895 19.21 2.36 37.39 3.91
217 218 0.250901 GTGCCTCCAGGAGAAGCAAA 60.251 55.000 19.21 0.00 37.39 3.68
218 219 0.700564 TGCCTCCAGGAGAAGCAAAT 59.299 50.000 19.21 0.00 37.39 2.32
219 220 1.076024 TGCCTCCAGGAGAAGCAAATT 59.924 47.619 19.21 0.00 37.39 1.82
220 221 2.174360 GCCTCCAGGAGAAGCAAATTT 58.826 47.619 19.21 0.00 37.39 1.82
221 222 3.245229 TGCCTCCAGGAGAAGCAAATTTA 60.245 43.478 19.21 0.00 37.39 1.40
222 223 3.956848 GCCTCCAGGAGAAGCAAATTTAT 59.043 43.478 19.21 0.00 37.39 1.40
223 224 4.202090 GCCTCCAGGAGAAGCAAATTTATG 60.202 45.833 19.21 0.00 37.39 1.90
224 225 4.202090 CCTCCAGGAGAAGCAAATTTATGC 60.202 45.833 19.21 0.00 41.43 3.14
225 226 7.182238 CCTCCAGGAGAAGCAAATTTATGCC 62.182 48.000 19.21 0.00 41.82 4.40
228 229 4.643784 CAGGAGAAGCAAATTTATGCCTCT 59.356 41.667 3.41 3.41 46.92 3.69
229 230 5.824624 CAGGAGAAGCAAATTTATGCCTCTA 59.175 40.000 3.71 0.00 44.89 2.43
230 231 6.017275 CAGGAGAAGCAAATTTATGCCTCTAG 60.017 42.308 3.71 0.00 44.89 2.43
231 232 5.278218 GGAGAAGCAAATTTATGCCTCTAGC 60.278 44.000 3.71 0.00 44.89 3.42
232 233 4.274459 AGAAGCAAATTTATGCCTCTAGCG 59.726 41.667 2.07 0.00 43.49 4.26
233 234 5.916267 AGAAGCAAATTTATGCCTCTAGCGA 60.916 40.000 2.07 0.00 43.49 4.93
234 235 7.352951 AGAAGCAAATTTATGCCTCTAGCGAA 61.353 38.462 2.07 0.00 43.49 4.70
235 236 8.757495 AGAAGCAAATTTATGCCTCTAGCGAAA 61.757 37.037 2.07 0.00 43.49 3.46
264 265 8.986477 AAAATCACAATTTTCCTCTATTTCCG 57.014 30.769 0.00 0.00 40.28 4.30
265 266 7.938140 AATCACAATTTTCCTCTATTTCCGA 57.062 32.000 0.00 0.00 0.00 4.55
266 267 6.985188 TCACAATTTTCCTCTATTTCCGAG 57.015 37.500 0.00 0.00 0.00 4.63
267 268 6.707290 TCACAATTTTCCTCTATTTCCGAGA 58.293 36.000 0.00 0.00 0.00 4.04
268 269 6.818644 TCACAATTTTCCTCTATTTCCGAGAG 59.181 38.462 0.00 0.00 40.22 3.20
289 290 1.721389 GCACATATATGCGTCTCACGG 59.279 52.381 12.79 0.00 42.82 4.94
291 292 3.638484 CACATATATGCGTCTCACGGAA 58.362 45.455 12.79 0.00 46.78 4.30
292 293 3.670523 CACATATATGCGTCTCACGGAAG 59.329 47.826 12.79 0.00 46.78 3.46
293 294 3.568430 ACATATATGCGTCTCACGGAAGA 59.432 43.478 12.79 0.00 46.78 2.87
294 295 4.037565 ACATATATGCGTCTCACGGAAGAA 59.962 41.667 12.79 0.00 46.78 2.52
295 296 3.520290 ATATGCGTCTCACGGAAGAAA 57.480 42.857 0.00 0.00 46.78 2.52
296 297 2.163818 ATGCGTCTCACGGAAGAAAA 57.836 45.000 0.00 0.00 46.78 2.29
297 298 1.942677 TGCGTCTCACGGAAGAAAAA 58.057 45.000 0.00 0.00 39.47 1.94
326 327 3.378911 TTTCGGGCAATCTTTTTGTCC 57.621 42.857 0.00 0.00 40.64 4.02
327 328 2.286365 TCGGGCAATCTTTTTGTCCT 57.714 45.000 7.32 0.00 41.81 3.85
328 329 3.426787 TCGGGCAATCTTTTTGTCCTA 57.573 42.857 7.32 0.00 41.81 2.94
329 330 3.343617 TCGGGCAATCTTTTTGTCCTAG 58.656 45.455 7.32 0.00 41.81 3.02
330 331 3.008594 TCGGGCAATCTTTTTGTCCTAGA 59.991 43.478 7.32 0.00 41.81 2.43
331 332 3.756434 CGGGCAATCTTTTTGTCCTAGAA 59.244 43.478 7.32 0.00 41.81 2.10
332 333 4.217550 CGGGCAATCTTTTTGTCCTAGAAA 59.782 41.667 7.32 0.00 41.81 2.52
333 334 5.278758 CGGGCAATCTTTTTGTCCTAGAAAA 60.279 40.000 7.32 0.00 41.81 2.29
334 335 6.521162 GGGCAATCTTTTTGTCCTAGAAAAA 58.479 36.000 1.80 0.00 40.84 1.94
335 336 6.423905 GGGCAATCTTTTTGTCCTAGAAAAAC 59.576 38.462 1.80 0.00 40.84 2.43
336 337 6.423905 GGCAATCTTTTTGTCCTAGAAAAACC 59.576 38.462 0.00 0.00 30.89 3.27
337 338 6.983890 GCAATCTTTTTGTCCTAGAAAAACCA 59.016 34.615 0.00 0.00 30.89 3.67
338 339 7.494298 GCAATCTTTTTGTCCTAGAAAAACCAA 59.506 33.333 0.00 0.00 30.89 3.67
339 340 9.377312 CAATCTTTTTGTCCTAGAAAAACCAAA 57.623 29.630 0.00 0.00 30.89 3.28
340 341 9.952030 AATCTTTTTGTCCTAGAAAAACCAAAA 57.048 25.926 0.00 0.00 30.89 2.44
341 342 9.952030 ATCTTTTTGTCCTAGAAAAACCAAAAA 57.048 25.926 0.00 0.00 38.63 1.94
343 344 7.603963 TTTTGTCCTAGAAAAACCAAAAAGC 57.396 32.000 0.00 0.00 31.17 3.51
344 345 6.538945 TTGTCCTAGAAAAACCAAAAAGCT 57.461 33.333 0.00 0.00 0.00 3.74
345 346 7.648039 TTGTCCTAGAAAAACCAAAAAGCTA 57.352 32.000 0.00 0.00 0.00 3.32
346 347 7.272037 TGTCCTAGAAAAACCAAAAAGCTAG 57.728 36.000 0.00 0.00 0.00 3.42
347 348 7.057894 TGTCCTAGAAAAACCAAAAAGCTAGA 58.942 34.615 0.00 0.00 0.00 2.43
348 349 7.558444 TGTCCTAGAAAAACCAAAAAGCTAGAA 59.442 33.333 0.00 0.00 0.00 2.10
349 350 8.410912 GTCCTAGAAAAACCAAAAAGCTAGAAA 58.589 33.333 0.00 0.00 0.00 2.52
350 351 8.973182 TCCTAGAAAAACCAAAAAGCTAGAAAA 58.027 29.630 0.00 0.00 0.00 2.29
351 352 9.249457 CCTAGAAAAACCAAAAAGCTAGAAAAG 57.751 33.333 0.00 0.00 0.00 2.27
352 353 9.803315 CTAGAAAAACCAAAAAGCTAGAAAAGT 57.197 29.630 0.00 0.00 0.00 2.66
380 381 8.500753 AAAAACATCTAAAACCCAAAAACTCC 57.499 30.769 0.00 0.00 0.00 3.85
381 382 7.432148 AAACATCTAAAACCCAAAAACTCCT 57.568 32.000 0.00 0.00 0.00 3.69
382 383 8.541899 AAACATCTAAAACCCAAAAACTCCTA 57.458 30.769 0.00 0.00 0.00 2.94
383 384 8.541899 AACATCTAAAACCCAAAAACTCCTAA 57.458 30.769 0.00 0.00 0.00 2.69
384 385 8.541899 ACATCTAAAACCCAAAAACTCCTAAA 57.458 30.769 0.00 0.00 0.00 1.85
385 386 8.638873 ACATCTAAAACCCAAAAACTCCTAAAG 58.361 33.333 0.00 0.00 0.00 1.85
386 387 8.856103 CATCTAAAACCCAAAAACTCCTAAAGA 58.144 33.333 0.00 0.00 0.00 2.52
387 388 8.826293 TCTAAAACCCAAAAACTCCTAAAGAA 57.174 30.769 0.00 0.00 0.00 2.52
388 389 9.257428 TCTAAAACCCAAAAACTCCTAAAGAAA 57.743 29.630 0.00 0.00 0.00 2.52
389 390 9.878667 CTAAAACCCAAAAACTCCTAAAGAAAA 57.121 29.630 0.00 0.00 0.00 2.29
416 417 1.260544 AAAATCCTGAGCAAGCACCC 58.739 50.000 0.00 0.00 0.00 4.61
417 418 0.112995 AAATCCTGAGCAAGCACCCA 59.887 50.000 0.00 0.00 0.00 4.51
418 419 0.323178 AATCCTGAGCAAGCACCCAG 60.323 55.000 0.00 0.00 0.00 4.45
419 420 2.833604 ATCCTGAGCAAGCACCCAGC 62.834 60.000 0.00 0.00 46.19 4.85
445 446 4.680237 CGTGGCGGTGGCTGAGAA 62.680 66.667 0.00 0.00 39.81 2.87
446 447 3.050275 GTGGCGGTGGCTGAGAAC 61.050 66.667 0.00 0.00 39.81 3.01
447 448 4.680237 TGGCGGTGGCTGAGAACG 62.680 66.667 0.00 0.00 39.81 3.95
451 452 3.112709 GGTGGCTGAGAACGCGTC 61.113 66.667 14.44 6.38 0.00 5.19
452 453 2.355837 GTGGCTGAGAACGCGTCA 60.356 61.111 14.44 5.41 0.00 4.35
453 454 1.954146 GTGGCTGAGAACGCGTCAA 60.954 57.895 14.44 0.00 0.00 3.18
454 455 1.227409 TGGCTGAGAACGCGTCAAA 60.227 52.632 14.44 0.00 0.00 2.69
455 456 0.812014 TGGCTGAGAACGCGTCAAAA 60.812 50.000 14.44 0.00 0.00 2.44
456 457 0.110644 GGCTGAGAACGCGTCAAAAG 60.111 55.000 14.44 9.94 0.00 2.27
457 458 0.582005 GCTGAGAACGCGTCAAAAGT 59.418 50.000 14.44 0.00 0.00 2.66
458 459 1.657538 GCTGAGAACGCGTCAAAAGTG 60.658 52.381 14.44 1.00 0.00 3.16
459 460 0.303493 TGAGAACGCGTCAAAAGTGC 59.697 50.000 14.44 0.00 0.00 4.40
460 461 0.384353 GAGAACGCGTCAAAAGTGCC 60.384 55.000 14.44 0.00 0.00 5.01
461 462 1.370051 GAACGCGTCAAAAGTGCCC 60.370 57.895 14.44 0.00 0.00 5.36
462 463 1.782028 GAACGCGTCAAAAGTGCCCT 61.782 55.000 14.44 0.00 0.00 5.19
463 464 1.381165 AACGCGTCAAAAGTGCCCTT 61.381 50.000 14.44 0.00 0.00 3.95
464 465 1.370414 CGCGTCAAAAGTGCCCTTG 60.370 57.895 0.00 0.00 0.00 3.61
465 466 1.781025 CGCGTCAAAAGTGCCCTTGA 61.781 55.000 0.00 0.00 0.00 3.02
466 467 0.040067 GCGTCAAAAGTGCCCTTGAG 60.040 55.000 0.00 0.00 32.36 3.02
467 468 0.593128 CGTCAAAAGTGCCCTTGAGG 59.407 55.000 0.00 0.00 32.36 3.86
477 478 3.170362 CCTTGAGGGCTCCCACAA 58.830 61.111 15.37 15.37 42.71 3.33
479 480 3.170362 TTGAGGGCTCCCACAAGG 58.830 61.111 12.79 0.00 40.71 3.61
498 499 2.693267 GGCTACCCCTCAGTTAGTTG 57.307 55.000 0.00 0.00 0.00 3.16
499 500 1.407025 GGCTACCCCTCAGTTAGTTGC 60.407 57.143 0.00 0.00 0.00 4.17
500 501 1.555533 GCTACCCCTCAGTTAGTTGCT 59.444 52.381 0.00 0.00 0.00 3.91
501 502 2.418884 GCTACCCCTCAGTTAGTTGCTC 60.419 54.545 0.00 0.00 0.00 4.26
502 503 2.031495 ACCCCTCAGTTAGTTGCTCT 57.969 50.000 0.00 0.00 0.00 4.09
503 504 1.903183 ACCCCTCAGTTAGTTGCTCTC 59.097 52.381 0.00 0.00 0.00 3.20
504 505 1.902508 CCCCTCAGTTAGTTGCTCTCA 59.097 52.381 0.00 0.00 0.00 3.27
505 506 2.503356 CCCCTCAGTTAGTTGCTCTCAT 59.497 50.000 0.00 0.00 0.00 2.90
506 507 3.054802 CCCCTCAGTTAGTTGCTCTCATT 60.055 47.826 0.00 0.00 0.00 2.57
507 508 4.566488 CCCCTCAGTTAGTTGCTCTCATTT 60.566 45.833 0.00 0.00 0.00 2.32
508 509 4.633565 CCCTCAGTTAGTTGCTCTCATTTC 59.366 45.833 0.00 0.00 0.00 2.17
509 510 5.486526 CCTCAGTTAGTTGCTCTCATTTCT 58.513 41.667 0.00 0.00 0.00 2.52
510 511 5.580297 CCTCAGTTAGTTGCTCTCATTTCTC 59.420 44.000 0.00 0.00 0.00 2.87
511 512 6.101650 TCAGTTAGTTGCTCTCATTTCTCA 57.898 37.500 0.00 0.00 0.00 3.27
512 513 6.705302 TCAGTTAGTTGCTCTCATTTCTCAT 58.295 36.000 0.00 0.00 0.00 2.90
513 514 7.164122 TCAGTTAGTTGCTCTCATTTCTCATT 58.836 34.615 0.00 0.00 0.00 2.57
514 515 7.118825 TCAGTTAGTTGCTCTCATTTCTCATTG 59.881 37.037 0.00 0.00 0.00 2.82
515 516 6.939163 AGTTAGTTGCTCTCATTTCTCATTGT 59.061 34.615 0.00 0.00 0.00 2.71
516 517 8.097038 AGTTAGTTGCTCTCATTTCTCATTGTA 58.903 33.333 0.00 0.00 0.00 2.41
517 518 8.887717 GTTAGTTGCTCTCATTTCTCATTGTAT 58.112 33.333 0.00 0.00 0.00 2.29
519 520 8.659925 AGTTGCTCTCATTTCTCATTGTATAG 57.340 34.615 0.00 0.00 0.00 1.31
520 521 8.481314 AGTTGCTCTCATTTCTCATTGTATAGA 58.519 33.333 0.00 0.00 0.00 1.98
521 522 9.102757 GTTGCTCTCATTTCTCATTGTATAGAA 57.897 33.333 0.00 0.00 0.00 2.10
522 523 9.842775 TTGCTCTCATTTCTCATTGTATAGAAT 57.157 29.630 0.00 0.00 32.05 2.40
565 566 9.403583 TGTTACAATCCTAGATTTTTGGTATCC 57.596 33.333 0.00 0.00 0.00 2.59
593 594 2.691409 TTATCGGGCTTGACTCTTGG 57.309 50.000 0.00 0.00 0.00 3.61
596 597 2.436109 GGGCTTGACTCTTGGGCA 59.564 61.111 0.00 0.00 0.00 5.36
597 598 1.228552 GGGCTTGACTCTTGGGCAA 60.229 57.895 0.00 0.00 41.27 4.52
643 646 1.304713 ATGGGCTTCAGGCTGGTTG 60.305 57.895 15.73 6.32 41.46 3.77
750 753 0.179100 CTCTCACACGGATCGCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
765 768 2.759560 AATGCCCATCCAACGGCC 60.760 61.111 0.00 0.00 45.07 6.13
766 769 4.839706 ATGCCCATCCAACGGCCC 62.840 66.667 0.00 0.00 45.07 5.80
776 779 4.715523 AACGGCCCACACCCATCG 62.716 66.667 0.00 0.00 0.00 3.84
782 785 4.109675 CCACACCCATCGTCCCCC 62.110 72.222 0.00 0.00 0.00 5.40
783 786 3.326578 CACACCCATCGTCCCCCA 61.327 66.667 0.00 0.00 0.00 4.96
784 787 2.286121 ACACCCATCGTCCCCCAT 60.286 61.111 0.00 0.00 0.00 4.00
789 793 4.969196 CATCGTCCCCCATCCGCG 62.969 72.222 0.00 0.00 0.00 6.46
831 836 4.394712 CCCGTCCTCCACACCAGC 62.395 72.222 0.00 0.00 0.00 4.85
880 888 0.248054 ACAGAAAGCACAAACGCACG 60.248 50.000 0.00 0.00 0.00 5.34
881 889 1.298339 AGAAAGCACAAACGCACGC 60.298 52.632 0.00 0.00 0.00 5.34
882 890 1.585002 GAAAGCACAAACGCACGCA 60.585 52.632 0.00 0.00 0.00 5.24
883 891 1.797388 GAAAGCACAAACGCACGCAC 61.797 55.000 0.00 0.00 0.00 5.34
902 910 2.203422 CTCCCCCACCGCACAAAA 60.203 61.111 0.00 0.00 0.00 2.44
904 912 2.835431 CCCCCACCGCACAAAACA 60.835 61.111 0.00 0.00 0.00 2.83
1008 1016 2.049985 GGATCGGCGATGGAGACG 60.050 66.667 29.20 0.00 45.53 4.18
1260 1278 2.032620 GGAAGGACTAGCTCCGATTCA 58.967 52.381 0.00 0.00 45.10 2.57
1269 1287 1.205893 AGCTCCGATTCACCTCTGTTC 59.794 52.381 0.00 0.00 0.00 3.18
1277 1295 4.865365 CGATTCACCTCTGTTCTTTACCTC 59.135 45.833 0.00 0.00 0.00 3.85
1618 1645 2.495669 CCCTCCTCTCTGTTTGTCTCTC 59.504 54.545 0.00 0.00 0.00 3.20
1620 1647 3.193267 CCTCCTCTCTGTTTGTCTCTCTG 59.807 52.174 0.00 0.00 0.00 3.35
1622 1649 3.823873 TCCTCTCTGTTTGTCTCTCTGTC 59.176 47.826 0.00 0.00 0.00 3.51
1623 1650 3.826157 CCTCTCTGTTTGTCTCTCTGTCT 59.174 47.826 0.00 0.00 0.00 3.41
1624 1651 4.082787 CCTCTCTGTTTGTCTCTCTGTCTC 60.083 50.000 0.00 0.00 0.00 3.36
1769 1796 4.382470 CCAATCAGCTTGTACTCTGTAGCT 60.382 45.833 0.00 0.00 44.34 3.32
1803 1834 3.404564 CTGTATGTTCGTTTAAGTGCGC 58.595 45.455 0.00 0.00 0.00 6.09
1925 1961 1.531149 TCTTTTGCTGCACGCTAAGAC 59.469 47.619 0.00 0.00 40.11 3.01
1979 2015 2.586425 TGTTTAGCTTCTTTGCAGCCT 58.414 42.857 0.00 0.00 38.09 4.58
2002 2038 1.393603 GAGGAAAGCTATTGGGGTGC 58.606 55.000 0.00 0.00 0.00 5.01
2033 2074 2.158608 GGGGGATGTTCCTATCACTTGG 60.159 54.545 0.00 0.00 36.57 3.61
2074 2115 7.988599 TCTAAGTGAAAACCTTGTAGCTTGTAA 59.011 33.333 0.00 0.00 0.00 2.41
2075 2116 7.399245 AAGTGAAAACCTTGTAGCTTGTAAA 57.601 32.000 0.00 0.00 0.00 2.01
2089 2130 3.380320 GCTTGTAAACGGAATAGGCCATT 59.620 43.478 5.01 2.34 0.00 3.16
2121 2162 6.804677 TGTGCTGTTGAATTCTTGTTATGTT 58.195 32.000 7.05 0.00 0.00 2.71
2137 2178 6.774673 TGTTATGTTGATTCAACTGGTAGGA 58.225 36.000 25.49 8.19 43.85 2.94
2150 2191 3.440173 ACTGGTAGGATGCAAAAATGTCG 59.560 43.478 0.00 0.00 0.00 4.35
2152 2193 2.479560 GGTAGGATGCAAAAATGTCGGC 60.480 50.000 0.00 0.00 0.00 5.54
2252 3226 7.652727 TCATTTCAATTGGTTAATCAACGACA 58.347 30.769 2.56 0.00 35.34 4.35
2421 3396 4.734398 TGAGTTCATTTGGTTGCTTTGT 57.266 36.364 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.009888 GCGAGAGGCATAACTGTGC 58.990 57.895 0.00 0.00 44.31 4.57
14 15 0.807496 AATTTGCTTCTGCGAGAGGC 59.193 50.000 11.53 11.53 46.21 4.70
15 16 2.860062 CAAATTTGCTTCTGCGAGAGG 58.140 47.619 5.01 0.00 43.34 3.69
38 39 4.425577 ACAAATTTGCTTCGCTTAGAGG 57.574 40.909 18.12 0.00 0.00 3.69
39 40 4.853743 GGAACAAATTTGCTTCGCTTAGAG 59.146 41.667 18.12 0.00 0.00 2.43
40 41 4.518970 AGGAACAAATTTGCTTCGCTTAGA 59.481 37.500 18.12 0.00 0.00 2.10
41 42 4.798574 AGGAACAAATTTGCTTCGCTTAG 58.201 39.130 18.12 0.00 0.00 2.18
42 43 4.518970 AGAGGAACAAATTTGCTTCGCTTA 59.481 37.500 18.12 0.00 0.00 3.09
43 44 3.319122 AGAGGAACAAATTTGCTTCGCTT 59.681 39.130 18.12 3.69 0.00 4.68
44 45 2.887152 AGAGGAACAAATTTGCTTCGCT 59.113 40.909 18.12 9.12 0.00 4.93
45 46 3.237628 GAGAGGAACAAATTTGCTTCGC 58.762 45.455 18.12 6.79 0.00 4.70
46 47 4.222114 GTGAGAGGAACAAATTTGCTTCG 58.778 43.478 18.12 0.00 0.00 3.79
47 48 4.222114 CGTGAGAGGAACAAATTTGCTTC 58.778 43.478 18.12 17.93 0.00 3.86
48 49 3.004734 CCGTGAGAGGAACAAATTTGCTT 59.995 43.478 18.12 11.21 0.00 3.91
49 50 2.554032 CCGTGAGAGGAACAAATTTGCT 59.446 45.455 18.12 5.87 0.00 3.91
50 51 2.552315 TCCGTGAGAGGAACAAATTTGC 59.448 45.455 18.12 2.73 37.36 3.68
51 52 4.515191 TCTTCCGTGAGAGGAACAAATTTG 59.485 41.667 16.67 16.67 44.66 2.32
52 53 4.714632 TCTTCCGTGAGAGGAACAAATTT 58.285 39.130 0.00 0.00 44.66 1.82
53 54 4.351874 TCTTCCGTGAGAGGAACAAATT 57.648 40.909 0.00 0.00 44.66 1.82
54 55 4.351874 TTCTTCCGTGAGAGGAACAAAT 57.648 40.909 0.00 0.00 44.66 2.32
55 56 3.830744 TTCTTCCGTGAGAGGAACAAA 57.169 42.857 0.00 0.00 44.66 2.83
56 57 3.830744 TTTCTTCCGTGAGAGGAACAA 57.169 42.857 0.00 0.00 44.66 2.83
57 58 3.830744 TTTTCTTCCGTGAGAGGAACA 57.169 42.857 0.00 0.00 44.66 3.18
79 80 9.908152 CCCTAACGAAAAGAGAAAAATGTATTT 57.092 29.630 0.00 0.00 0.00 1.40
80 81 8.027189 GCCCTAACGAAAAGAGAAAAATGTATT 58.973 33.333 0.00 0.00 0.00 1.89
81 82 7.175990 TGCCCTAACGAAAAGAGAAAAATGTAT 59.824 33.333 0.00 0.00 0.00 2.29
82 83 6.487331 TGCCCTAACGAAAAGAGAAAAATGTA 59.513 34.615 0.00 0.00 0.00 2.29
83 84 5.300792 TGCCCTAACGAAAAGAGAAAAATGT 59.699 36.000 0.00 0.00 0.00 2.71
84 85 5.768317 TGCCCTAACGAAAAGAGAAAAATG 58.232 37.500 0.00 0.00 0.00 2.32
85 86 5.564848 GCTGCCCTAACGAAAAGAGAAAAAT 60.565 40.000 0.00 0.00 0.00 1.82
86 87 4.261447 GCTGCCCTAACGAAAAGAGAAAAA 60.261 41.667 0.00 0.00 0.00 1.94
87 88 3.252458 GCTGCCCTAACGAAAAGAGAAAA 59.748 43.478 0.00 0.00 0.00 2.29
88 89 2.812011 GCTGCCCTAACGAAAAGAGAAA 59.188 45.455 0.00 0.00 0.00 2.52
89 90 2.038557 AGCTGCCCTAACGAAAAGAGAA 59.961 45.455 0.00 0.00 0.00 2.87
90 91 1.623811 AGCTGCCCTAACGAAAAGAGA 59.376 47.619 0.00 0.00 0.00 3.10
91 92 1.734465 CAGCTGCCCTAACGAAAAGAG 59.266 52.381 0.00 0.00 0.00 2.85
92 93 1.071699 ACAGCTGCCCTAACGAAAAGA 59.928 47.619 15.27 0.00 0.00 2.52
93 94 1.523758 ACAGCTGCCCTAACGAAAAG 58.476 50.000 15.27 0.00 0.00 2.27
94 95 2.419667 GTACAGCTGCCCTAACGAAAA 58.580 47.619 15.27 0.00 0.00 2.29
95 96 1.338389 GGTACAGCTGCCCTAACGAAA 60.338 52.381 15.27 0.00 0.00 3.46
96 97 0.248289 GGTACAGCTGCCCTAACGAA 59.752 55.000 15.27 0.00 0.00 3.85
97 98 0.613853 AGGTACAGCTGCCCTAACGA 60.614 55.000 20.91 0.00 0.00 3.85
98 99 0.249398 AAGGTACAGCTGCCCTAACG 59.751 55.000 22.15 0.00 0.00 3.18
99 100 2.488153 CAAAAGGTACAGCTGCCCTAAC 59.512 50.000 22.15 7.74 0.00 2.34
100 101 2.107552 ACAAAAGGTACAGCTGCCCTAA 59.892 45.455 22.15 0.00 0.00 2.69
101 102 1.702957 ACAAAAGGTACAGCTGCCCTA 59.297 47.619 22.15 2.35 0.00 3.53
102 103 0.478507 ACAAAAGGTACAGCTGCCCT 59.521 50.000 15.27 16.66 0.00 5.19
103 104 0.598065 CACAAAAGGTACAGCTGCCC 59.402 55.000 15.27 14.42 0.00 5.36
104 105 1.604604 TCACAAAAGGTACAGCTGCC 58.395 50.000 15.27 8.08 0.00 4.85
105 106 3.632189 CTTTCACAAAAGGTACAGCTGC 58.368 45.455 15.27 0.00 38.59 5.25
106 107 3.066621 TGCTTTCACAAAAGGTACAGCTG 59.933 43.478 13.48 13.48 41.87 4.24
107 108 3.287222 TGCTTTCACAAAAGGTACAGCT 58.713 40.909 0.00 0.00 41.87 4.24
108 109 3.708563 TGCTTTCACAAAAGGTACAGC 57.291 42.857 0.00 0.00 41.87 4.40
109 110 4.803613 GGTTTGCTTTCACAAAAGGTACAG 59.196 41.667 0.00 0.00 40.99 2.74
110 111 4.464597 AGGTTTGCTTTCACAAAAGGTACA 59.535 37.500 0.00 0.00 40.99 2.90
111 112 4.803613 CAGGTTTGCTTTCACAAAAGGTAC 59.196 41.667 0.58 0.00 40.99 3.34
112 113 4.464597 ACAGGTTTGCTTTCACAAAAGGTA 59.535 37.500 0.58 0.00 40.99 3.08
113 114 3.260632 ACAGGTTTGCTTTCACAAAAGGT 59.739 39.130 0.58 0.00 40.99 3.50
114 115 3.860641 ACAGGTTTGCTTTCACAAAAGG 58.139 40.909 0.58 0.00 40.99 3.11
115 116 4.803613 GGTACAGGTTTGCTTTCACAAAAG 59.196 41.667 0.00 0.00 40.99 2.27
116 117 4.464597 AGGTACAGGTTTGCTTTCACAAAA 59.535 37.500 0.00 0.00 40.99 2.44
117 118 4.020543 AGGTACAGGTTTGCTTTCACAAA 58.979 39.130 0.00 0.00 37.20 2.83
118 119 3.626930 AGGTACAGGTTTGCTTTCACAA 58.373 40.909 0.00 0.00 0.00 3.33
119 120 3.290948 AGGTACAGGTTTGCTTTCACA 57.709 42.857 0.00 0.00 0.00 3.58
120 121 3.630312 TGAAGGTACAGGTTTGCTTTCAC 59.370 43.478 0.00 0.00 0.00 3.18
121 122 3.892284 TGAAGGTACAGGTTTGCTTTCA 58.108 40.909 0.00 0.00 0.00 2.69
122 123 4.518970 TCATGAAGGTACAGGTTTGCTTTC 59.481 41.667 0.00 0.00 0.00 2.62
123 124 4.469657 TCATGAAGGTACAGGTTTGCTTT 58.530 39.130 0.00 0.00 0.00 3.51
124 125 4.074970 CTCATGAAGGTACAGGTTTGCTT 58.925 43.478 0.00 0.00 0.00 3.91
125 126 3.327757 TCTCATGAAGGTACAGGTTTGCT 59.672 43.478 0.00 0.00 0.00 3.91
126 127 3.674997 TCTCATGAAGGTACAGGTTTGC 58.325 45.455 0.00 0.00 0.00 3.68
127 128 5.869753 CTTCTCATGAAGGTACAGGTTTG 57.130 43.478 0.00 0.00 44.33 2.93
133 134 7.628580 CACGAGATTACTTCTCATGAAGGTACA 60.629 40.741 10.05 0.00 45.43 2.90
134 135 6.693545 CACGAGATTACTTCTCATGAAGGTAC 59.306 42.308 10.05 0.00 45.43 3.34
135 136 6.377429 ACACGAGATTACTTCTCATGAAGGTA 59.623 38.462 5.77 0.00 45.43 3.08
136 137 5.186021 ACACGAGATTACTTCTCATGAAGGT 59.814 40.000 5.77 0.00 45.43 3.50
137 138 5.655488 ACACGAGATTACTTCTCATGAAGG 58.345 41.667 5.77 0.00 45.43 3.46
138 139 7.588143 AAACACGAGATTACTTCTCATGAAG 57.412 36.000 5.77 4.47 45.43 3.02
139 140 7.962964 AAAACACGAGATTACTTCTCATGAA 57.037 32.000 5.77 0.00 45.43 2.57
140 141 7.962964 AAAAACACGAGATTACTTCTCATGA 57.037 32.000 5.77 0.00 45.43 3.07
168 169 0.316204 TCACGGGAGACTTCGGAAAC 59.684 55.000 0.00 0.00 0.00 2.78
169 170 1.042229 TTCACGGGAGACTTCGGAAA 58.958 50.000 0.00 0.00 0.00 3.13
170 171 1.042229 TTTCACGGGAGACTTCGGAA 58.958 50.000 0.00 0.00 0.00 4.30
171 172 1.042229 TTTTCACGGGAGACTTCGGA 58.958 50.000 0.00 0.00 0.00 4.55
172 173 1.798813 CTTTTTCACGGGAGACTTCGG 59.201 52.381 0.00 0.00 0.00 4.30
173 174 2.750948 TCTTTTTCACGGGAGACTTCG 58.249 47.619 0.00 0.00 0.00 3.79
174 175 4.998033 AGATTCTTTTTCACGGGAGACTTC 59.002 41.667 0.00 0.00 0.00 3.01
175 176 4.757149 CAGATTCTTTTTCACGGGAGACTT 59.243 41.667 0.00 0.00 0.00 3.01
176 177 4.202367 ACAGATTCTTTTTCACGGGAGACT 60.202 41.667 0.00 0.00 0.00 3.24
177 178 4.065789 ACAGATTCTTTTTCACGGGAGAC 58.934 43.478 0.00 0.00 0.00 3.36
178 179 4.065088 CACAGATTCTTTTTCACGGGAGA 58.935 43.478 0.00 0.00 0.00 3.71
179 180 3.365364 GCACAGATTCTTTTTCACGGGAG 60.365 47.826 0.00 0.00 0.00 4.30
180 181 2.552315 GCACAGATTCTTTTTCACGGGA 59.448 45.455 0.00 0.00 0.00 5.14
181 182 2.351738 GGCACAGATTCTTTTTCACGGG 60.352 50.000 0.00 0.00 0.00 5.28
182 183 2.554032 AGGCACAGATTCTTTTTCACGG 59.446 45.455 0.00 0.00 0.00 4.94
183 184 3.365364 GGAGGCACAGATTCTTTTTCACG 60.365 47.826 0.00 0.00 0.00 4.35
184 185 3.569701 TGGAGGCACAGATTCTTTTTCAC 59.430 43.478 0.00 0.00 0.00 3.18
185 186 3.822735 CTGGAGGCACAGATTCTTTTTCA 59.177 43.478 3.43 0.00 40.97 2.69
186 187 3.192212 CCTGGAGGCACAGATTCTTTTTC 59.808 47.826 10.33 0.00 40.97 2.29
187 188 3.160269 CCTGGAGGCACAGATTCTTTTT 58.840 45.455 10.33 0.00 40.97 1.94
188 189 2.376518 TCCTGGAGGCACAGATTCTTTT 59.623 45.455 10.33 0.00 40.97 2.27
189 190 1.988107 TCCTGGAGGCACAGATTCTTT 59.012 47.619 10.33 0.00 40.97 2.52
190 191 1.558756 CTCCTGGAGGCACAGATTCTT 59.441 52.381 16.19 0.00 40.97 2.52
191 192 1.202330 CTCCTGGAGGCACAGATTCT 58.798 55.000 16.19 0.00 40.97 2.40
192 193 1.198713 TCTCCTGGAGGCACAGATTC 58.801 55.000 23.00 0.00 40.97 2.52
193 194 1.558756 CTTCTCCTGGAGGCACAGATT 59.441 52.381 23.00 0.00 40.97 2.40
194 195 1.202330 CTTCTCCTGGAGGCACAGAT 58.798 55.000 23.00 0.00 40.97 2.90
195 196 1.548357 GCTTCTCCTGGAGGCACAGA 61.548 60.000 23.00 0.14 44.96 3.41
196 197 1.078567 GCTTCTCCTGGAGGCACAG 60.079 63.158 23.00 14.36 44.96 3.66
197 198 3.072476 GCTTCTCCTGGAGGCACA 58.928 61.111 23.00 1.00 44.96 4.57
200 201 1.844687 AATTTGCTTCTCCTGGAGGC 58.155 50.000 23.00 18.89 45.68 4.70
201 202 4.202090 GCATAAATTTGCTTCTCCTGGAGG 60.202 45.833 23.00 9.56 39.57 4.30
202 203 4.202090 GGCATAAATTTGCTTCTCCTGGAG 60.202 45.833 17.84 17.84 42.38 3.86
203 204 3.701040 GGCATAAATTTGCTTCTCCTGGA 59.299 43.478 0.00 0.00 42.38 3.86
204 205 3.703052 AGGCATAAATTTGCTTCTCCTGG 59.297 43.478 0.00 0.00 42.38 4.45
205 206 4.929781 GAGGCATAAATTTGCTTCTCCTG 58.070 43.478 0.00 0.00 43.28 3.86
210 211 4.273480 TCGCTAGAGGCATAAATTTGCTTC 59.727 41.667 6.20 6.20 46.00 3.86
211 212 4.199310 TCGCTAGAGGCATAAATTTGCTT 58.801 39.130 0.00 0.00 42.38 3.91
212 213 3.808728 TCGCTAGAGGCATAAATTTGCT 58.191 40.909 0.00 0.00 42.38 3.91
213 214 4.552166 TTCGCTAGAGGCATAAATTTGC 57.448 40.909 0.00 0.00 41.91 3.68
214 215 6.363577 TCTTTCGCTAGAGGCATAAATTTG 57.636 37.500 0.00 0.00 41.91 2.32
215 216 7.391148 TTTCTTTCGCTAGAGGCATAAATTT 57.609 32.000 0.00 0.00 41.91 1.82
216 217 7.391148 TTTTCTTTCGCTAGAGGCATAAATT 57.609 32.000 0.00 0.00 41.91 1.82
217 218 7.391148 TTTTTCTTTCGCTAGAGGCATAAAT 57.609 32.000 0.00 0.00 41.91 1.40
218 219 6.811253 TTTTTCTTTCGCTAGAGGCATAAA 57.189 33.333 0.00 0.00 41.91 1.40
238 239 9.423061 CGGAAATAGAGGAAAATTGTGATTTTT 57.577 29.630 0.00 0.00 43.61 1.94
239 240 8.802267 TCGGAAATAGAGGAAAATTGTGATTTT 58.198 29.630 0.00 0.00 45.62 1.82
240 241 8.348285 TCGGAAATAGAGGAAAATTGTGATTT 57.652 30.769 0.00 0.00 37.06 2.17
241 242 7.829211 TCTCGGAAATAGAGGAAAATTGTGATT 59.171 33.333 0.00 0.00 36.45 2.57
242 243 7.338710 TCTCGGAAATAGAGGAAAATTGTGAT 58.661 34.615 0.00 0.00 36.45 3.06
243 244 6.707290 TCTCGGAAATAGAGGAAAATTGTGA 58.293 36.000 0.00 0.00 36.45 3.58
244 245 6.985188 TCTCGGAAATAGAGGAAAATTGTG 57.015 37.500 0.00 0.00 36.45 3.33
254 255 3.742433 ATGTGCCTCTCGGAAATAGAG 57.258 47.619 0.00 0.00 40.21 2.43
255 256 6.628175 GCATATATGTGCCTCTCGGAAATAGA 60.628 42.308 13.10 0.00 39.18 1.98
256 257 5.521735 GCATATATGTGCCTCTCGGAAATAG 59.478 44.000 13.10 0.00 39.18 1.73
257 258 5.419542 GCATATATGTGCCTCTCGGAAATA 58.580 41.667 13.10 0.00 39.18 1.40
258 259 4.256920 GCATATATGTGCCTCTCGGAAAT 58.743 43.478 13.10 0.00 39.18 2.17
259 260 3.664107 GCATATATGTGCCTCTCGGAAA 58.336 45.455 13.10 0.00 39.18 3.13
260 261 2.352715 CGCATATATGTGCCTCTCGGAA 60.353 50.000 17.62 0.00 42.06 4.30
261 262 1.202348 CGCATATATGTGCCTCTCGGA 59.798 52.381 17.62 0.00 42.06 4.55
262 263 1.067565 ACGCATATATGTGCCTCTCGG 60.068 52.381 23.14 6.12 42.06 4.63
263 264 2.095008 AGACGCATATATGTGCCTCTCG 60.095 50.000 23.14 13.83 42.06 4.04
264 265 3.506810 GAGACGCATATATGTGCCTCTC 58.493 50.000 26.29 25.75 44.18 3.20
265 266 2.893489 TGAGACGCATATATGTGCCTCT 59.107 45.455 30.41 23.43 44.65 3.69
266 267 2.989840 GTGAGACGCATATATGTGCCTC 59.010 50.000 26.63 26.63 44.62 4.70
267 268 2.608016 CGTGAGACGCATATATGTGCCT 60.608 50.000 23.14 18.80 42.06 4.75
268 269 1.721389 CGTGAGACGCATATATGTGCC 59.279 52.381 23.14 14.45 42.06 5.01
269 270 1.721389 CCGTGAGACGCATATATGTGC 59.279 52.381 23.14 14.00 40.91 4.57
270 271 3.282831 TCCGTGAGACGCATATATGTG 57.717 47.619 21.92 21.92 40.91 3.21
271 272 3.568430 TCTTCCGTGAGACGCATATATGT 59.432 43.478 14.14 0.00 40.91 2.29
272 273 4.160736 TCTTCCGTGAGACGCATATATG 57.839 45.455 8.45 8.45 40.91 1.78
273 274 4.848562 TTCTTCCGTGAGACGCATATAT 57.151 40.909 0.00 0.00 40.91 0.86
274 275 4.642445 TTTCTTCCGTGAGACGCATATA 57.358 40.909 0.00 0.00 40.91 0.86
275 276 3.520290 TTTCTTCCGTGAGACGCATAT 57.480 42.857 0.00 0.00 40.91 1.78
276 277 3.306917 TTTTCTTCCGTGAGACGCATA 57.693 42.857 0.00 0.00 40.91 3.14
277 278 2.163818 TTTTCTTCCGTGAGACGCAT 57.836 45.000 0.00 0.00 40.91 4.73
278 279 1.942677 TTTTTCTTCCGTGAGACGCA 58.057 45.000 0.00 0.00 40.91 5.24
304 305 4.123506 GGACAAAAAGATTGCCCGAAAAA 58.876 39.130 0.00 0.00 0.00 1.94
305 306 3.386402 AGGACAAAAAGATTGCCCGAAAA 59.614 39.130 0.00 0.00 0.00 2.29
306 307 2.962421 AGGACAAAAAGATTGCCCGAAA 59.038 40.909 0.00 0.00 0.00 3.46
307 308 2.593026 AGGACAAAAAGATTGCCCGAA 58.407 42.857 0.00 0.00 0.00 4.30
308 309 2.286365 AGGACAAAAAGATTGCCCGA 57.714 45.000 0.00 0.00 0.00 5.14
309 310 3.343617 TCTAGGACAAAAAGATTGCCCG 58.656 45.455 0.00 0.00 0.00 6.13
310 311 5.722021 TTTCTAGGACAAAAAGATTGCCC 57.278 39.130 0.00 0.00 0.00 5.36
311 312 6.423905 GGTTTTTCTAGGACAAAAAGATTGCC 59.576 38.462 1.85 0.00 34.23 4.52
312 313 6.983890 TGGTTTTTCTAGGACAAAAAGATTGC 59.016 34.615 1.85 0.00 34.23 3.56
313 314 8.940768 TTGGTTTTTCTAGGACAAAAAGATTG 57.059 30.769 1.85 0.00 34.23 2.67
314 315 9.952030 TTTTGGTTTTTCTAGGACAAAAAGATT 57.048 25.926 0.00 0.00 35.60 2.40
315 316 9.952030 TTTTTGGTTTTTCTAGGACAAAAAGAT 57.048 25.926 0.00 0.00 40.62 2.40
318 319 7.880713 AGCTTTTTGGTTTTTCTAGGACAAAAA 59.119 29.630 11.18 11.18 42.17 1.94
319 320 7.390823 AGCTTTTTGGTTTTTCTAGGACAAAA 58.609 30.769 0.00 0.00 36.41 2.44
320 321 6.941857 AGCTTTTTGGTTTTTCTAGGACAAA 58.058 32.000 0.00 0.00 0.00 2.83
321 322 6.538945 AGCTTTTTGGTTTTTCTAGGACAA 57.461 33.333 0.00 0.00 0.00 3.18
322 323 7.057894 TCTAGCTTTTTGGTTTTTCTAGGACA 58.942 34.615 0.00 0.00 0.00 4.02
323 324 7.506328 TCTAGCTTTTTGGTTTTTCTAGGAC 57.494 36.000 0.00 0.00 0.00 3.85
324 325 8.528044 TTTCTAGCTTTTTGGTTTTTCTAGGA 57.472 30.769 0.00 0.00 0.00 2.94
325 326 9.249457 CTTTTCTAGCTTTTTGGTTTTTCTAGG 57.751 33.333 0.00 0.00 0.00 3.02
326 327 9.803315 ACTTTTCTAGCTTTTTGGTTTTTCTAG 57.197 29.630 0.00 0.00 0.00 2.43
355 356 8.325787 AGGAGTTTTTGGGTTTTAGATGTTTTT 58.674 29.630 0.00 0.00 0.00 1.94
356 357 7.857456 AGGAGTTTTTGGGTTTTAGATGTTTT 58.143 30.769 0.00 0.00 0.00 2.43
357 358 7.432148 AGGAGTTTTTGGGTTTTAGATGTTT 57.568 32.000 0.00 0.00 0.00 2.83
358 359 8.541899 TTAGGAGTTTTTGGGTTTTAGATGTT 57.458 30.769 0.00 0.00 0.00 2.71
359 360 8.541899 TTTAGGAGTTTTTGGGTTTTAGATGT 57.458 30.769 0.00 0.00 0.00 3.06
360 361 8.856103 TCTTTAGGAGTTTTTGGGTTTTAGATG 58.144 33.333 0.00 0.00 0.00 2.90
361 362 9.429109 TTCTTTAGGAGTTTTTGGGTTTTAGAT 57.571 29.630 0.00 0.00 0.00 1.98
362 363 8.826293 TTCTTTAGGAGTTTTTGGGTTTTAGA 57.174 30.769 0.00 0.00 0.00 2.10
363 364 9.878667 TTTTCTTTAGGAGTTTTTGGGTTTTAG 57.121 29.630 0.00 0.00 0.00 1.85
396 397 1.620323 GGGTGCTTGCTCAGGATTTTT 59.380 47.619 0.00 0.00 0.00 1.94
397 398 1.260544 GGGTGCTTGCTCAGGATTTT 58.739 50.000 0.00 0.00 0.00 1.82
398 399 0.112995 TGGGTGCTTGCTCAGGATTT 59.887 50.000 0.00 0.00 0.00 2.17
399 400 0.323178 CTGGGTGCTTGCTCAGGATT 60.323 55.000 0.00 0.00 33.48 3.01
400 401 1.302285 CTGGGTGCTTGCTCAGGAT 59.698 57.895 0.00 0.00 33.48 3.24
401 402 2.752358 CTGGGTGCTTGCTCAGGA 59.248 61.111 0.00 0.00 33.48 3.86
402 403 3.060615 GCTGGGTGCTTGCTCAGG 61.061 66.667 5.74 0.00 37.44 3.86
403 404 2.281970 TGCTGGGTGCTTGCTCAG 60.282 61.111 0.00 0.12 43.37 3.35
404 405 2.595463 GTGCTGGGTGCTTGCTCA 60.595 61.111 0.00 0.00 43.37 4.26
405 406 3.730761 CGTGCTGGGTGCTTGCTC 61.731 66.667 0.00 0.00 43.37 4.26
428 429 4.680237 TTCTCAGCCACCGCCACG 62.680 66.667 0.00 0.00 34.57 4.94
429 430 3.050275 GTTCTCAGCCACCGCCAC 61.050 66.667 0.00 0.00 34.57 5.01
430 431 4.680237 CGTTCTCAGCCACCGCCA 62.680 66.667 0.00 0.00 34.57 5.69
434 435 3.112709 GACGCGTTCTCAGCCACC 61.113 66.667 15.53 0.00 0.00 4.61
435 436 1.495584 TTTGACGCGTTCTCAGCCAC 61.496 55.000 15.53 0.00 0.00 5.01
436 437 0.812014 TTTTGACGCGTTCTCAGCCA 60.812 50.000 15.53 0.78 0.00 4.75
437 438 0.110644 CTTTTGACGCGTTCTCAGCC 60.111 55.000 15.53 0.00 0.00 4.85
438 439 0.582005 ACTTTTGACGCGTTCTCAGC 59.418 50.000 15.53 0.00 0.00 4.26
439 440 1.657538 GCACTTTTGACGCGTTCTCAG 60.658 52.381 15.53 10.53 0.00 3.35
440 441 0.303493 GCACTTTTGACGCGTTCTCA 59.697 50.000 15.53 3.54 0.00 3.27
441 442 0.384353 GGCACTTTTGACGCGTTCTC 60.384 55.000 15.53 0.04 0.00 2.87
442 443 1.647084 GGCACTTTTGACGCGTTCT 59.353 52.632 15.53 0.00 0.00 3.01
443 444 1.370051 GGGCACTTTTGACGCGTTC 60.370 57.895 15.53 7.53 0.00 3.95
444 445 1.381165 AAGGGCACTTTTGACGCGTT 61.381 50.000 15.53 0.00 31.39 4.84
445 446 1.822186 AAGGGCACTTTTGACGCGT 60.822 52.632 13.85 13.85 31.39 6.01
446 447 1.370414 CAAGGGCACTTTTGACGCG 60.370 57.895 3.53 3.53 33.81 6.01
447 448 0.040067 CTCAAGGGCACTTTTGACGC 60.040 55.000 0.00 0.00 33.81 5.19
448 449 0.593128 CCTCAAGGGCACTTTTGACG 59.407 55.000 0.00 0.00 33.81 4.35
460 461 3.170362 TTGTGGGAGCCCTCAAGG 58.830 61.111 16.76 0.00 42.43 3.61
462 463 3.170362 CCTTGTGGGAGCCCTCAA 58.830 61.111 18.88 18.88 44.26 3.02
472 473 1.915078 CTGAGGGGTAGCCCTTGTGG 61.915 65.000 32.73 18.35 44.66 4.17
473 474 1.201429 ACTGAGGGGTAGCCCTTGTG 61.201 60.000 32.73 24.96 44.66 3.33
474 475 0.475828 AACTGAGGGGTAGCCCTTGT 60.476 55.000 32.73 28.13 44.66 3.16
475 476 1.486726 CTAACTGAGGGGTAGCCCTTG 59.513 57.143 32.73 27.52 44.66 3.61
476 477 1.080666 ACTAACTGAGGGGTAGCCCTT 59.919 52.381 32.73 19.55 44.66 3.95
477 478 0.717196 ACTAACTGAGGGGTAGCCCT 59.283 55.000 32.80 32.80 44.66 5.19
478 479 1.209747 CAACTAACTGAGGGGTAGCCC 59.790 57.143 23.15 23.15 44.51 5.19
479 480 1.407025 GCAACTAACTGAGGGGTAGCC 60.407 57.143 1.07 1.07 38.74 3.93
480 481 1.555533 AGCAACTAACTGAGGGGTAGC 59.444 52.381 0.00 0.00 38.74 3.58
481 482 3.100671 AGAGCAACTAACTGAGGGGTAG 58.899 50.000 0.00 0.00 40.85 3.18
482 483 3.097614 GAGAGCAACTAACTGAGGGGTA 58.902 50.000 0.00 0.00 0.00 3.69
483 484 1.903183 GAGAGCAACTAACTGAGGGGT 59.097 52.381 0.00 0.00 0.00 4.95
484 485 1.902508 TGAGAGCAACTAACTGAGGGG 59.097 52.381 0.00 0.00 0.00 4.79
485 486 3.902881 ATGAGAGCAACTAACTGAGGG 57.097 47.619 0.00 0.00 0.00 4.30
486 487 5.486526 AGAAATGAGAGCAACTAACTGAGG 58.513 41.667 0.00 0.00 0.00 3.86
487 488 6.162079 TGAGAAATGAGAGCAACTAACTGAG 58.838 40.000 0.00 0.00 0.00 3.35
488 489 6.101650 TGAGAAATGAGAGCAACTAACTGA 57.898 37.500 0.00 0.00 0.00 3.41
489 490 6.981762 ATGAGAAATGAGAGCAACTAACTG 57.018 37.500 0.00 0.00 0.00 3.16
490 491 6.939163 ACAATGAGAAATGAGAGCAACTAACT 59.061 34.615 0.00 0.00 0.00 2.24
491 492 7.138692 ACAATGAGAAATGAGAGCAACTAAC 57.861 36.000 0.00 0.00 0.00 2.34
493 494 9.755804 CTATACAATGAGAAATGAGAGCAACTA 57.244 33.333 0.00 0.00 0.00 2.24
494 495 8.481314 TCTATACAATGAGAAATGAGAGCAACT 58.519 33.333 0.00 0.00 0.00 3.16
495 496 8.654230 TCTATACAATGAGAAATGAGAGCAAC 57.346 34.615 0.00 0.00 0.00 4.17
496 497 9.842775 ATTCTATACAATGAGAAATGAGAGCAA 57.157 29.630 0.00 0.00 35.40 3.91
540 541 9.628500 AGGATACCAAAAATCTAGGATTGTAAC 57.372 33.333 0.00 0.00 37.17 2.50
544 545 6.491403 CCCAGGATACCAAAAATCTAGGATTG 59.509 42.308 0.00 0.00 37.17 2.67
550 551 3.791545 AGGCCCAGGATACCAAAAATCTA 59.208 43.478 0.00 0.00 37.17 1.98
565 566 3.841870 GCCCGATAAAAGGCCCAG 58.158 61.111 0.00 0.00 43.76 4.45
597 598 2.956333 GGCGGGCTTGGACTATATTTTT 59.044 45.455 0.00 0.00 0.00 1.94
601 602 1.489560 GGGGCGGGCTTGGACTATAT 61.490 60.000 0.26 0.00 0.00 0.86
765 768 4.109675 GGGGGACGATGGGTGTGG 62.110 72.222 0.00 0.00 0.00 4.17
766 769 2.608970 GATGGGGGACGATGGGTGTG 62.609 65.000 0.00 0.00 0.00 3.82
782 785 2.960957 ATCTGGAGCGTTCGCGGATG 62.961 60.000 6.13 3.44 41.67 3.51
783 786 2.685387 GATCTGGAGCGTTCGCGGAT 62.685 60.000 6.13 12.67 41.67 4.18
784 787 3.411418 GATCTGGAGCGTTCGCGGA 62.411 63.158 6.13 0.00 41.67 5.54
789 793 0.458543 TGCTTCGATCTGGAGCGTTC 60.459 55.000 8.06 0.00 41.48 3.95
817 821 4.394712 CGGGCTGGTGTGGAGGAC 62.395 72.222 0.00 0.00 0.00 3.85
825 830 3.551496 TTTCTGCTCCGGGCTGGTG 62.551 63.158 13.14 11.51 42.39 4.17
828 833 2.032528 TGTTTCTGCTCCGGGCTG 59.967 61.111 14.76 13.98 42.39 4.85
829 834 2.032681 GTGTTTCTGCTCCGGGCT 59.967 61.111 14.76 0.00 42.39 5.19
831 836 0.250295 TTCTGTGTTTCTGCTCCGGG 60.250 55.000 0.00 0.00 0.00 5.73
836 841 3.081061 TGTGTGTTTCTGTGTTTCTGCT 58.919 40.909 0.00 0.00 0.00 4.24
883 891 3.783362 TTTGTGCGGTGGGGGAGTG 62.783 63.158 0.00 0.00 0.00 3.51
1236 1254 2.278923 GAGCTAGTCCTTCCGCGC 60.279 66.667 0.00 0.00 0.00 6.86
1260 1278 5.648330 AAAAGGAGGTAAAGAACAGAGGT 57.352 39.130 0.00 0.00 0.00 3.85
1503 1527 2.584391 GGGAGACTTGGTCGTGCCT 61.584 63.158 1.06 0.00 37.67 4.75
1769 1796 4.092237 CGAACATACAGCGGTGTTAATCAA 59.908 41.667 26.96 6.86 38.57 2.57
1803 1834 0.329596 CCCTCCCTTTCCTTCACCTG 59.670 60.000 0.00 0.00 0.00 4.00
1925 1961 5.880054 ACCAGATAAACACAAGAAATCGG 57.120 39.130 0.00 0.00 0.00 4.18
1979 2015 2.381961 ACCCCAATAGCTTTCCTCCAAA 59.618 45.455 0.00 0.00 0.00 3.28
2074 2115 2.643551 CACTCAATGGCCTATTCCGTT 58.356 47.619 3.32 0.00 35.81 4.44
2075 2116 1.134098 CCACTCAATGGCCTATTCCGT 60.134 52.381 3.32 0.00 43.24 4.69
2089 2130 0.107263 TTCAACAGCACAGCCACTCA 60.107 50.000 0.00 0.00 0.00 3.41
2121 2162 3.998913 TGCATCCTACCAGTTGAATCA 57.001 42.857 0.00 0.00 0.00 2.57
2137 2178 0.247185 CAGGGCCGACATTTTTGCAT 59.753 50.000 0.00 0.00 0.00 3.96
2150 2191 0.255890 TTTCTATCAGCACCAGGGCC 59.744 55.000 0.00 0.00 0.00 5.80
2152 2193 3.565764 TGATTTCTATCAGCACCAGGG 57.434 47.619 0.00 0.00 35.87 4.45
2388 3363 8.273780 ACCAAATGAACTCAAGAATCAGTATC 57.726 34.615 0.00 0.00 0.00 2.24
2421 3396 5.028549 ACAACCAAATTACCAAACATGCA 57.971 34.783 0.00 0.00 0.00 3.96
2433 3408 3.540314 TCTGCTGCAAACAACCAAATT 57.460 38.095 3.02 0.00 0.00 1.82
2508 3483 9.528489 AAGCTATAAGGTTTCCACTTTGAAATA 57.472 29.630 0.00 0.00 36.68 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.