Multiple sequence alignment - TraesCS1D01G284100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G284100 chr1D 100.000 2969 0 0 1 2969 382259109 382256141 0.000000e+00 5483.0
1 TraesCS1D01G284100 chr1D 94.007 584 31 2 1 580 233087705 233088288 0.000000e+00 881.0
2 TraesCS1D01G284100 chr1D 93.356 587 35 2 1 583 8478646 8479232 0.000000e+00 865.0
3 TraesCS1D01G284100 chr1D 93.139 583 36 2 1 579 2678127 2678709 0.000000e+00 852.0
4 TraesCS1D01G284100 chr1D 92.675 587 39 2 1 583 8516519 8517105 0.000000e+00 843.0
5 TraesCS1D01G284100 chr1D 92.321 586 38 4 1 582 487279593 487279011 0.000000e+00 826.0
6 TraesCS1D01G284100 chr1D 91.319 288 24 1 2682 2969 58617525 58617239 2.770000e-105 392.0
7 TraesCS1D01G284100 chr1D 90.378 291 28 0 2679 2969 403762386 403762676 1.670000e-102 383.0
8 TraesCS1D01G284100 chr1D 97.222 36 1 0 1781 1816 310815278 310815243 8.890000e-06 62.1
9 TraesCS1D01G284100 chr1D 94.444 36 2 0 1781 1816 432319823 432319858 4.130000e-04 56.5
10 TraesCS1D01G284100 chr1A 92.270 1824 89 16 816 2598 482377399 482375587 0.000000e+00 2540.0
11 TraesCS1D01G284100 chr1A 92.845 587 36 3 1 583 534170047 534170631 0.000000e+00 846.0
12 TraesCS1D01G284100 chr1A 92.675 587 38 3 1 583 425262056 425262641 0.000000e+00 841.0
13 TraesCS1D01G284100 chr1A 91.398 186 7 5 600 781 482377578 482377398 2.290000e-61 246.0
14 TraesCS1D01G284100 chr1A 83.077 65 11 0 1752 1816 390709589 390709653 3.200000e-05 60.2
15 TraesCS1D01G284100 chr1B 91.098 1202 78 19 1022 2208 512181684 512180497 0.000000e+00 1600.0
16 TraesCS1D01G284100 chr1B 87.533 377 36 8 2231 2598 512179578 512179204 2.740000e-115 425.0
17 TraesCS1D01G284100 chr1B 95.050 101 4 1 807 906 512182203 512182103 1.100000e-34 158.0
18 TraesCS1D01G284100 chr1B 98.551 69 1 0 911 979 512182026 512181958 4.020000e-24 122.0
19 TraesCS1D01G284100 chr1B 83.077 65 11 0 1752 1816 583760701 583760765 3.200000e-05 60.2
20 TraesCS1D01G284100 chr1B 94.444 36 2 0 1781 1816 420685724 420685759 4.130000e-04 56.5
21 TraesCS1D01G284100 chr7D 93.015 587 36 3 1 583 64225698 64225113 0.000000e+00 852.0
22 TraesCS1D01G284100 chr2A 92.650 585 39 2 1 581 32550037 32550621 0.000000e+00 839.0
23 TraesCS1D01G284100 chr5D 91.349 289 24 1 2679 2967 454029574 454029861 7.710000e-106 394.0
24 TraesCS1D01G284100 chr2D 91.349 289 21 3 2684 2969 489573150 489573437 2.770000e-105 392.0
25 TraesCS1D01G284100 chr2D 90.411 292 27 1 2679 2969 54123146 54123437 1.670000e-102 383.0
26 TraesCS1D01G284100 chr3D 90.722 291 25 2 2679 2968 606508207 606508496 1.290000e-103 387.0
27 TraesCS1D01G284100 chr3D 90.657 289 25 2 2682 2969 475867243 475866956 1.670000e-102 383.0
28 TraesCS1D01G284100 chr6D 90.722 291 24 3 2679 2968 432362952 432363240 4.640000e-103 385.0
29 TraesCS1D01G284100 chr6D 90.444 293 25 3 2679 2969 420194021 420194312 1.670000e-102 383.0
30 TraesCS1D01G284100 chr5A 93.478 46 3 0 2241 2286 697875263 697875308 5.310000e-08 69.4
31 TraesCS1D01G284100 chr5A 81.690 71 13 0 1752 1822 696925364 696925294 3.200000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G284100 chr1D 382256141 382259109 2968 True 5483.00 5483 100.000 1 2969 1 chr1D.!!$R3 2968
1 TraesCS1D01G284100 chr1D 233087705 233088288 583 False 881.00 881 94.007 1 580 1 chr1D.!!$F4 579
2 TraesCS1D01G284100 chr1D 8478646 8479232 586 False 865.00 865 93.356 1 583 1 chr1D.!!$F2 582
3 TraesCS1D01G284100 chr1D 2678127 2678709 582 False 852.00 852 93.139 1 579 1 chr1D.!!$F1 578
4 TraesCS1D01G284100 chr1D 8516519 8517105 586 False 843.00 843 92.675 1 583 1 chr1D.!!$F3 582
5 TraesCS1D01G284100 chr1D 487279011 487279593 582 True 826.00 826 92.321 1 582 1 chr1D.!!$R4 581
6 TraesCS1D01G284100 chr1A 482375587 482377578 1991 True 1393.00 2540 91.834 600 2598 2 chr1A.!!$R1 1998
7 TraesCS1D01G284100 chr1A 534170047 534170631 584 False 846.00 846 92.845 1 583 1 chr1A.!!$F3 582
8 TraesCS1D01G284100 chr1A 425262056 425262641 585 False 841.00 841 92.675 1 583 1 chr1A.!!$F2 582
9 TraesCS1D01G284100 chr1B 512179204 512182203 2999 True 576.25 1600 93.058 807 2598 4 chr1B.!!$R1 1791
10 TraesCS1D01G284100 chr7D 64225113 64225698 585 True 852.00 852 93.015 1 583 1 chr7D.!!$R1 582
11 TraesCS1D01G284100 chr2A 32550037 32550621 584 False 839.00 839 92.650 1 581 1 chr2A.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 821 0.601311 AAAGAGGAGACAGCACGTGC 60.601 55.0 32.79 32.79 42.49 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2648 3897 0.106149 AGTTGGGGTGTTGTCGACTC 59.894 55.0 17.92 10.45 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 1.449070 GGCGTGGTAGCTTGGGTAC 60.449 63.158 0.00 0.00 36.00 3.34
155 157 2.277858 GGAGACGAAGAGGGCTTGA 58.722 57.895 0.00 0.00 33.61 3.02
229 232 2.416972 GCGTCGTATCCTTCTTGAAGGT 60.417 50.000 23.78 15.65 40.81 3.50
238 241 2.470821 CTTCTTGAAGGTGTCGTCGTT 58.529 47.619 2.63 0.00 0.00 3.85
289 292 1.490910 GGAAACCTCGATCCCTGGATT 59.509 52.381 0.00 0.00 34.60 3.01
290 293 2.565841 GAAACCTCGATCCCTGGATTG 58.434 52.381 7.04 7.04 37.36 2.67
295 298 2.595754 GATCCCTGGATTGGGCGC 60.596 66.667 0.00 0.00 46.67 6.53
376 379 1.290324 GCACAGCTCCGACTCTTCA 59.710 57.895 0.00 0.00 0.00 3.02
401 404 4.590487 TCGTTCACGAATGAGGCC 57.410 55.556 0.00 0.00 46.30 5.19
402 405 1.972198 TCGTTCACGAATGAGGCCT 59.028 52.632 3.86 3.86 46.30 5.19
433 439 1.893786 GGCGCTCTCTCTTCCTTCA 59.106 57.895 7.64 0.00 0.00 3.02
437 443 2.676463 GCGCTCTCTCTTCCTTCATGTT 60.676 50.000 0.00 0.00 0.00 2.71
502 508 2.086869 CTTGTATCTTGCCCTGTGTGG 58.913 52.381 0.00 0.00 0.00 4.17
546 552 3.755112 TGGTTGTAACTGGATCGTTGA 57.245 42.857 0.00 0.00 0.00 3.18
584 590 4.514781 GGTGAAAGCCTTTTTCGGTATT 57.485 40.909 0.00 0.00 0.00 1.89
585 591 4.482386 GGTGAAAGCCTTTTTCGGTATTC 58.518 43.478 0.00 0.00 0.00 1.75
586 592 4.482386 GTGAAAGCCTTTTTCGGTATTCC 58.518 43.478 0.00 0.00 0.00 3.01
587 593 4.217767 GTGAAAGCCTTTTTCGGTATTCCT 59.782 41.667 0.00 0.00 0.00 3.36
588 594 4.457949 TGAAAGCCTTTTTCGGTATTCCTC 59.542 41.667 0.00 0.00 0.00 3.71
589 595 4.302559 AAGCCTTTTTCGGTATTCCTCT 57.697 40.909 0.00 0.00 0.00 3.69
590 596 4.302559 AGCCTTTTTCGGTATTCCTCTT 57.697 40.909 0.00 0.00 0.00 2.85
591 597 4.663334 AGCCTTTTTCGGTATTCCTCTTT 58.337 39.130 0.00 0.00 0.00 2.52
592 598 5.077564 AGCCTTTTTCGGTATTCCTCTTTT 58.922 37.500 0.00 0.00 0.00 2.27
593 599 5.538813 AGCCTTTTTCGGTATTCCTCTTTTT 59.461 36.000 0.00 0.00 0.00 1.94
594 600 5.633601 GCCTTTTTCGGTATTCCTCTTTTTG 59.366 40.000 0.00 0.00 0.00 2.44
595 601 6.737622 GCCTTTTTCGGTATTCCTCTTTTTGT 60.738 38.462 0.00 0.00 0.00 2.83
596 602 7.207383 CCTTTTTCGGTATTCCTCTTTTTGTT 58.793 34.615 0.00 0.00 0.00 2.83
597 603 7.709182 CCTTTTTCGGTATTCCTCTTTTTGTTT 59.291 33.333 0.00 0.00 0.00 2.83
598 604 7.995463 TTTTCGGTATTCCTCTTTTTGTTTG 57.005 32.000 0.00 0.00 0.00 2.93
607 613 4.466015 TCCTCTTTTTGTTTGTCTTGCCTT 59.534 37.500 0.00 0.00 0.00 4.35
651 657 8.463930 AGAGGATTTGTTAAAACAGTTGATGA 57.536 30.769 0.00 0.00 40.50 2.92
652 658 9.082313 AGAGGATTTGTTAAAACAGTTGATGAT 57.918 29.630 0.00 0.00 40.50 2.45
653 659 9.132521 GAGGATTTGTTAAAACAGTTGATGATG 57.867 33.333 0.00 0.00 40.50 3.07
654 660 7.599998 AGGATTTGTTAAAACAGTTGATGATGC 59.400 33.333 0.00 0.00 40.50 3.91
655 661 7.148590 GGATTTGTTAAAACAGTTGATGATGCC 60.149 37.037 0.00 0.00 40.50 4.40
657 663 6.403866 TGTTAAAACAGTTGATGATGCCTT 57.596 33.333 0.00 0.00 34.30 4.35
658 664 6.215121 TGTTAAAACAGTTGATGATGCCTTG 58.785 36.000 0.00 0.00 34.30 3.61
660 666 7.013750 TGTTAAAACAGTTGATGATGCCTTGTA 59.986 33.333 0.00 0.00 34.30 2.41
663 669 5.571784 ACAGTTGATGATGCCTTGTATTG 57.428 39.130 0.00 0.00 0.00 1.90
664 670 5.012239 ACAGTTGATGATGCCTTGTATTGT 58.988 37.500 0.00 0.00 0.00 2.71
695 702 9.803507 TCTTATGAAGCCTATTTCATGATTCAT 57.196 29.630 17.82 17.82 45.00 2.57
716 723 2.135933 GGCGATCTTATGCTGGTACAC 58.864 52.381 0.00 0.00 0.00 2.90
753 760 4.574828 CACGATCCCTGACGGAAAATAATT 59.425 41.667 0.00 0.00 46.47 1.40
781 788 6.347725 CGTTGAATCTGAGAAAAATCGAAGGT 60.348 38.462 0.00 0.00 0.00 3.50
782 789 6.486253 TGAATCTGAGAAAAATCGAAGGTG 57.514 37.500 0.00 0.00 0.00 4.00
783 790 5.997746 TGAATCTGAGAAAAATCGAAGGTGT 59.002 36.000 0.00 0.00 0.00 4.16
784 791 6.147821 TGAATCTGAGAAAAATCGAAGGTGTC 59.852 38.462 0.00 0.00 0.00 3.67
795 802 1.795768 GAAGGTGTCGACAGCAATCA 58.204 50.000 39.70 8.03 46.03 2.57
796 803 2.143122 GAAGGTGTCGACAGCAATCAA 58.857 47.619 39.70 7.19 46.03 2.57
797 804 2.254546 AGGTGTCGACAGCAATCAAA 57.745 45.000 39.70 6.43 46.03 2.69
798 805 2.146342 AGGTGTCGACAGCAATCAAAG 58.854 47.619 39.70 0.00 46.03 2.77
799 806 2.143122 GGTGTCGACAGCAATCAAAGA 58.857 47.619 35.80 1.12 43.34 2.52
800 807 2.158449 GGTGTCGACAGCAATCAAAGAG 59.842 50.000 35.80 0.00 43.34 2.85
801 808 2.158449 GTGTCGACAGCAATCAAAGAGG 59.842 50.000 20.73 0.00 0.00 3.69
802 809 2.037121 TGTCGACAGCAATCAAAGAGGA 59.963 45.455 15.76 0.00 0.00 3.71
803 810 2.670414 GTCGACAGCAATCAAAGAGGAG 59.330 50.000 11.55 0.00 0.00 3.69
804 811 2.562738 TCGACAGCAATCAAAGAGGAGA 59.437 45.455 0.00 0.00 0.00 3.71
805 812 2.670414 CGACAGCAATCAAAGAGGAGAC 59.330 50.000 0.00 0.00 0.00 3.36
814 821 0.601311 AAAGAGGAGACAGCACGTGC 60.601 55.000 32.79 32.79 42.49 5.34
1297 1608 0.108186 GAGCATGGACATGTGGACGA 60.108 55.000 1.15 0.00 40.80 4.20
1376 1687 1.278937 CGTCGGTCGACATCGCTAT 59.721 57.895 18.91 0.00 44.77 2.97
1431 1742 2.087462 GAACCAAAGCTGCCACCACC 62.087 60.000 0.00 0.00 0.00 4.61
1566 1883 2.438434 GCCCACTGGAACCCATCG 60.438 66.667 0.00 0.00 30.82 3.84
1577 1894 1.903877 AACCCATCGGAGTGCAGGAG 61.904 60.000 0.00 0.00 0.00 3.69
1621 1938 4.400961 AGAAGCACCAGAGCGGCC 62.401 66.667 0.00 0.00 39.03 6.13
1647 1964 0.035881 CAGAGAGGAGGCAGCAAACA 59.964 55.000 0.00 0.00 0.00 2.83
1833 2150 1.176527 GGCATAAGAACAAGCTGGCA 58.823 50.000 0.00 0.00 33.08 4.92
1962 2279 2.669569 AGTGCCGCAAATCGCACT 60.670 55.556 8.80 8.80 44.47 4.40
1978 2295 3.006430 TCGCACTGACTGATTAAACCTGA 59.994 43.478 0.00 0.00 0.00 3.86
2007 2324 7.079182 TCAAAATTATGACGCGAACCTATTT 57.921 32.000 15.93 10.05 0.00 1.40
2021 2338 7.034397 GCGAACCTATTTAGACAGTCTTACTT 58.966 38.462 8.80 0.00 0.00 2.24
2026 2343 7.067251 ACCTATTTAGACAGTCTTACTTCCTCG 59.933 40.741 8.80 0.00 0.00 4.63
2027 2344 6.837471 ATTTAGACAGTCTTACTTCCTCGT 57.163 37.500 8.80 0.00 0.00 4.18
2030 2347 7.551035 TTAGACAGTCTTACTTCCTCGTATC 57.449 40.000 8.80 0.00 0.00 2.24
2041 2358 9.627395 CTTACTTCCTCGTATCCATATTACTTG 57.373 37.037 0.00 0.00 0.00 3.16
2054 2371 9.826574 ATCCATATTACTTGTCGCTACTTTAAA 57.173 29.630 0.00 0.00 0.00 1.52
2057 2374 9.405083 CATATTACTTGTCGCTACTTTAAAACG 57.595 33.333 0.00 0.00 0.00 3.60
2098 2415 8.589701 AAAAATATAAATCGGAGGGAGTGTTT 57.410 30.769 0.00 0.00 0.00 2.83
2100 2417 7.803279 AATATAAATCGGAGGGAGTGTTTTC 57.197 36.000 0.00 0.00 0.00 2.29
2214 2538 7.228507 TGCTTTCTATTTTCAGTTGCTACTCAA 59.771 33.333 0.00 0.00 30.26 3.02
2260 3487 5.008980 TGCATGATGAGTTGTTGGTTGATA 58.991 37.500 0.00 0.00 0.00 2.15
2302 3530 9.874205 CCACAATCTAAATGTACATTCCATTTT 57.126 29.630 21.02 8.19 41.45 1.82
2331 3559 5.276773 GCTCTCATGAAATTACTCTTCAGCG 60.277 44.000 0.00 0.00 36.30 5.18
2361 3590 6.796705 TTGGAACTTATTCGGTTCTCTTTC 57.203 37.500 0.00 0.00 41.71 2.62
2381 3621 8.016497 TCTTTCGCAAAATACCAAATTGAATG 57.984 30.769 0.00 0.00 0.00 2.67
2420 3662 4.340617 TGTGTGGAAAGGCTATTTTAGGG 58.659 43.478 0.00 0.00 0.00 3.53
2421 3663 3.699538 GTGTGGAAAGGCTATTTTAGGGG 59.300 47.826 0.00 0.00 0.00 4.79
2422 3664 3.296854 GTGGAAAGGCTATTTTAGGGGG 58.703 50.000 0.00 0.00 0.00 5.40
2427 3669 4.790718 AAGGCTATTTTAGGGGGTGTAG 57.209 45.455 0.00 0.00 0.00 2.74
2431 3673 4.165565 GGCTATTTTAGGGGGTGTAGAACT 59.834 45.833 0.00 0.00 0.00 3.01
2603 3852 9.871238 TTAAATCCATTTATCTCCTATACGAGC 57.129 33.333 0.00 0.00 32.78 5.03
2604 3853 5.916661 TCCATTTATCTCCTATACGAGCC 57.083 43.478 0.00 0.00 0.00 4.70
2605 3854 5.330233 TCCATTTATCTCCTATACGAGCCA 58.670 41.667 0.00 0.00 0.00 4.75
2606 3855 5.778241 TCCATTTATCTCCTATACGAGCCAA 59.222 40.000 0.00 0.00 0.00 4.52
2607 3856 6.269077 TCCATTTATCTCCTATACGAGCCAAA 59.731 38.462 0.00 0.00 0.00 3.28
2608 3857 7.038302 TCCATTTATCTCCTATACGAGCCAAAT 60.038 37.037 0.00 1.25 0.00 2.32
2609 3858 7.278868 CCATTTATCTCCTATACGAGCCAAATC 59.721 40.741 0.00 0.00 0.00 2.17
2610 3859 6.911250 TTATCTCCTATACGAGCCAAATCA 57.089 37.500 0.00 0.00 0.00 2.57
2611 3860 5.808366 ATCTCCTATACGAGCCAAATCAA 57.192 39.130 0.00 0.00 0.00 2.57
2612 3861 4.945246 TCTCCTATACGAGCCAAATCAAC 58.055 43.478 0.00 0.00 0.00 3.18
2613 3862 3.713288 TCCTATACGAGCCAAATCAACG 58.287 45.455 0.00 0.00 0.00 4.10
2614 3863 3.131577 TCCTATACGAGCCAAATCAACGT 59.868 43.478 0.00 0.00 40.23 3.99
2615 3864 3.869246 CCTATACGAGCCAAATCAACGTT 59.131 43.478 0.00 0.00 38.18 3.99
2616 3865 4.331717 CCTATACGAGCCAAATCAACGTTT 59.668 41.667 0.00 0.00 38.18 3.60
2617 3866 4.759516 ATACGAGCCAAATCAACGTTTT 57.240 36.364 0.00 0.00 38.18 2.43
2618 3867 2.994849 ACGAGCCAAATCAACGTTTTC 58.005 42.857 0.00 0.00 33.48 2.29
2619 3868 2.287368 ACGAGCCAAATCAACGTTTTCC 60.287 45.455 0.00 0.00 33.48 3.13
2620 3869 2.672714 GAGCCAAATCAACGTTTTCCC 58.327 47.619 0.00 0.00 0.00 3.97
2621 3870 2.035321 GAGCCAAATCAACGTTTTCCCA 59.965 45.455 0.00 0.00 0.00 4.37
2622 3871 2.432510 AGCCAAATCAACGTTTTCCCAA 59.567 40.909 0.00 0.00 0.00 4.12
2623 3872 3.070878 AGCCAAATCAACGTTTTCCCAAT 59.929 39.130 0.00 0.00 0.00 3.16
2624 3873 3.812609 GCCAAATCAACGTTTTCCCAATT 59.187 39.130 0.00 0.00 0.00 2.32
2625 3874 4.274705 GCCAAATCAACGTTTTCCCAATTT 59.725 37.500 0.00 0.00 0.00 1.82
2626 3875 5.467063 GCCAAATCAACGTTTTCCCAATTTA 59.533 36.000 0.00 0.00 0.00 1.40
2627 3876 6.148645 GCCAAATCAACGTTTTCCCAATTTAT 59.851 34.615 0.00 0.00 0.00 1.40
2628 3877 7.308288 GCCAAATCAACGTTTTCCCAATTTATT 60.308 33.333 0.00 0.00 0.00 1.40
2629 3878 9.209175 CCAAATCAACGTTTTCCCAATTTATTA 57.791 29.630 0.00 0.00 0.00 0.98
2631 3880 9.765795 AAATCAACGTTTTCCCAATTTATTACA 57.234 25.926 0.00 0.00 0.00 2.41
2632 3881 9.936759 AATCAACGTTTTCCCAATTTATTACAT 57.063 25.926 0.00 0.00 0.00 2.29
2633 3882 8.749841 TCAACGTTTTCCCAATTTATTACATG 57.250 30.769 0.00 0.00 0.00 3.21
2634 3883 8.577296 TCAACGTTTTCCCAATTTATTACATGA 58.423 29.630 0.00 0.00 0.00 3.07
2635 3884 9.197694 CAACGTTTTCCCAATTTATTACATGAA 57.802 29.630 0.00 0.00 0.00 2.57
2636 3885 9.936759 AACGTTTTCCCAATTTATTACATGAAT 57.063 25.926 0.00 0.00 0.00 2.57
2637 3886 9.936759 ACGTTTTCCCAATTTATTACATGAATT 57.063 25.926 0.00 0.00 0.00 2.17
2651 3900 5.964958 ACATGAATTGAATTGAACCGAGT 57.035 34.783 0.00 0.00 0.00 4.18
2652 3901 5.942872 ACATGAATTGAATTGAACCGAGTC 58.057 37.500 0.00 0.00 0.00 3.36
2653 3902 4.661993 TGAATTGAATTGAACCGAGTCG 57.338 40.909 5.29 5.29 0.00 4.18
2654 3903 4.311606 TGAATTGAATTGAACCGAGTCGA 58.688 39.130 15.64 0.00 0.00 4.20
2655 3904 4.151689 TGAATTGAATTGAACCGAGTCGAC 59.848 41.667 15.64 7.70 0.00 4.20
2656 3905 2.804697 TGAATTGAACCGAGTCGACA 57.195 45.000 19.50 8.44 0.00 4.35
2657 3906 3.100658 TGAATTGAACCGAGTCGACAA 57.899 42.857 19.50 16.46 0.00 3.18
2658 3907 2.798283 TGAATTGAACCGAGTCGACAAC 59.202 45.455 19.50 10.37 0.00 3.32
2659 3908 2.519377 ATTGAACCGAGTCGACAACA 57.481 45.000 19.50 5.88 0.00 3.33
2660 3909 1.563111 TTGAACCGAGTCGACAACAC 58.437 50.000 19.50 5.24 0.00 3.32
2661 3910 0.249155 TGAACCGAGTCGACAACACC 60.249 55.000 19.50 2.76 0.00 4.16
2662 3911 0.942884 GAACCGAGTCGACAACACCC 60.943 60.000 19.50 0.00 0.00 4.61
2663 3912 2.048503 CCGAGTCGACAACACCCC 60.049 66.667 19.50 0.00 0.00 4.95
2664 3913 2.732016 CGAGTCGACAACACCCCA 59.268 61.111 19.50 0.00 0.00 4.96
2665 3914 1.068417 CGAGTCGACAACACCCCAA 59.932 57.895 19.50 0.00 0.00 4.12
2666 3915 1.219522 CGAGTCGACAACACCCCAAC 61.220 60.000 19.50 0.00 0.00 3.77
2667 3916 0.106149 GAGTCGACAACACCCCAACT 59.894 55.000 19.50 0.00 0.00 3.16
2668 3917 0.106149 AGTCGACAACACCCCAACTC 59.894 55.000 19.50 0.00 0.00 3.01
2669 3918 0.883370 GTCGACAACACCCCAACTCC 60.883 60.000 11.55 0.00 0.00 3.85
2670 3919 1.599797 CGACAACACCCCAACTCCC 60.600 63.158 0.00 0.00 0.00 4.30
2671 3920 1.534697 GACAACACCCCAACTCCCA 59.465 57.895 0.00 0.00 0.00 4.37
2672 3921 0.537371 GACAACACCCCAACTCCCAG 60.537 60.000 0.00 0.00 0.00 4.45
2673 3922 1.228552 CAACACCCCAACTCCCAGG 60.229 63.158 0.00 0.00 0.00 4.45
2674 3923 1.699930 AACACCCCAACTCCCAGGT 60.700 57.895 0.00 0.00 0.00 4.00
2675 3924 1.293683 AACACCCCAACTCCCAGGTT 61.294 55.000 0.00 0.00 0.00 3.50
2676 3925 1.228552 CACCCCAACTCCCAGGTTG 60.229 63.158 0.00 0.00 44.17 3.77
2677 3926 1.386772 ACCCCAACTCCCAGGTTGA 60.387 57.895 8.64 0.00 46.55 3.18
2678 3927 1.380302 CCCCAACTCCCAGGTTGAG 59.620 63.158 8.64 0.00 46.55 3.02
2679 3928 1.380302 CCCAACTCCCAGGTTGAGG 59.620 63.158 8.64 5.13 46.55 3.86
2680 3929 1.133809 CCCAACTCCCAGGTTGAGGA 61.134 60.000 8.64 0.00 46.55 3.71
2683 3932 3.811702 CTCCCAGGTTGAGGAGCA 58.188 61.111 0.00 0.00 43.11 4.26
2684 3933 1.298014 CTCCCAGGTTGAGGAGCAC 59.702 63.158 0.00 0.00 43.11 4.40
2685 3934 1.461268 TCCCAGGTTGAGGAGCACA 60.461 57.895 0.00 0.00 0.00 4.57
2686 3935 0.842030 TCCCAGGTTGAGGAGCACAT 60.842 55.000 0.00 0.00 0.00 3.21
2687 3936 0.679002 CCCAGGTTGAGGAGCACATG 60.679 60.000 0.00 0.00 0.00 3.21
2688 3937 1.310933 CCAGGTTGAGGAGCACATGC 61.311 60.000 0.00 0.00 42.49 4.06
2689 3938 0.607217 CAGGTTGAGGAGCACATGCA 60.607 55.000 6.64 0.00 45.16 3.96
2690 3939 0.322277 AGGTTGAGGAGCACATGCAG 60.322 55.000 6.64 0.00 45.16 4.41
2691 3940 1.505353 GTTGAGGAGCACATGCAGC 59.495 57.895 6.64 2.68 45.16 5.25
2692 3941 2.036571 TTGAGGAGCACATGCAGCG 61.037 57.895 6.64 0.00 45.16 5.18
2693 3942 3.873883 GAGGAGCACATGCAGCGC 61.874 66.667 0.00 0.00 45.16 5.92
2710 3959 4.368808 CGCCACTTGTCGCAACCG 62.369 66.667 0.00 0.00 0.00 4.44
2711 3960 4.025401 GCCACTTGTCGCAACCGG 62.025 66.667 0.00 0.00 34.56 5.28
2712 3961 3.353836 CCACTTGTCGCAACCGGG 61.354 66.667 6.32 0.00 34.56 5.73
2713 3962 3.353836 CACTTGTCGCAACCGGGG 61.354 66.667 6.32 0.00 34.56 5.73
2714 3963 3.868985 ACTTGTCGCAACCGGGGT 61.869 61.111 6.32 0.00 34.56 4.95
2715 3964 2.593436 CTTGTCGCAACCGGGGTT 60.593 61.111 6.32 0.00 39.13 4.11
2716 3965 2.124236 TTGTCGCAACCGGGGTTT 60.124 55.556 6.32 0.00 36.00 3.27
2717 3966 1.730451 CTTGTCGCAACCGGGGTTTT 61.730 55.000 6.32 0.00 36.00 2.43
2718 3967 1.321074 TTGTCGCAACCGGGGTTTTT 61.321 50.000 6.32 0.00 36.00 1.94
2771 4020 9.559958 AAAATATTTTATCTCTCAAACTGTGCG 57.440 29.630 11.76 0.00 0.00 5.34
2772 4021 7.849804 ATATTTTATCTCTCAAACTGTGCGT 57.150 32.000 0.00 0.00 0.00 5.24
2773 4022 5.591643 TTTTATCTCTCAAACTGTGCGTC 57.408 39.130 0.00 0.00 0.00 5.19
2774 4023 2.086054 ATCTCTCAAACTGTGCGTCC 57.914 50.000 0.00 0.00 0.00 4.79
2775 4024 0.750249 TCTCTCAAACTGTGCGTCCA 59.250 50.000 0.00 0.00 0.00 4.02
2776 4025 1.138069 TCTCTCAAACTGTGCGTCCAA 59.862 47.619 0.00 0.00 0.00 3.53
2777 4026 1.939934 CTCTCAAACTGTGCGTCCAAA 59.060 47.619 0.00 0.00 0.00 3.28
2778 4027 2.549754 CTCTCAAACTGTGCGTCCAAAT 59.450 45.455 0.00 0.00 0.00 2.32
2779 4028 2.548057 TCTCAAACTGTGCGTCCAAATC 59.452 45.455 0.00 0.00 0.00 2.17
2780 4029 2.549754 CTCAAACTGTGCGTCCAAATCT 59.450 45.455 0.00 0.00 0.00 2.40
2781 4030 2.548057 TCAAACTGTGCGTCCAAATCTC 59.452 45.455 0.00 0.00 0.00 2.75
2782 4031 2.254546 AACTGTGCGTCCAAATCTCA 57.745 45.000 0.00 0.00 0.00 3.27
2783 4032 2.254546 ACTGTGCGTCCAAATCTCAA 57.745 45.000 0.00 0.00 0.00 3.02
2784 4033 2.571212 ACTGTGCGTCCAAATCTCAAA 58.429 42.857 0.00 0.00 0.00 2.69
2785 4034 2.290641 ACTGTGCGTCCAAATCTCAAAC 59.709 45.455 0.00 0.00 0.00 2.93
2786 4035 1.606668 TGTGCGTCCAAATCTCAAACC 59.393 47.619 0.00 0.00 0.00 3.27
2787 4036 0.871722 TGCGTCCAAATCTCAAACCG 59.128 50.000 0.00 0.00 0.00 4.44
2788 4037 0.454452 GCGTCCAAATCTCAAACCGC 60.454 55.000 0.00 0.00 0.00 5.68
2789 4038 1.156736 CGTCCAAATCTCAAACCGCT 58.843 50.000 0.00 0.00 0.00 5.52
2790 4039 1.535462 CGTCCAAATCTCAAACCGCTT 59.465 47.619 0.00 0.00 0.00 4.68
2791 4040 2.031157 CGTCCAAATCTCAAACCGCTTT 60.031 45.455 0.00 0.00 0.00 3.51
2792 4041 3.550030 CGTCCAAATCTCAAACCGCTTTT 60.550 43.478 0.00 0.00 0.00 2.27
2793 4042 4.319911 CGTCCAAATCTCAAACCGCTTTTA 60.320 41.667 0.00 0.00 0.00 1.52
2794 4043 4.915667 GTCCAAATCTCAAACCGCTTTTAC 59.084 41.667 0.00 0.00 0.00 2.01
2795 4044 4.022676 TCCAAATCTCAAACCGCTTTTACC 60.023 41.667 0.00 0.00 0.00 2.85
2796 4045 3.824414 AATCTCAAACCGCTTTTACCG 57.176 42.857 0.00 0.00 0.00 4.02
2797 4046 2.243602 TCTCAAACCGCTTTTACCGT 57.756 45.000 0.00 0.00 0.00 4.83
2798 4047 2.563702 TCTCAAACCGCTTTTACCGTT 58.436 42.857 0.00 0.00 0.00 4.44
2799 4048 2.288458 TCTCAAACCGCTTTTACCGTTG 59.712 45.455 0.00 0.00 0.00 4.10
2800 4049 1.334243 TCAAACCGCTTTTACCGTTGG 59.666 47.619 0.00 0.00 0.00 3.77
2801 4050 1.334243 CAAACCGCTTTTACCGTTGGA 59.666 47.619 0.00 0.00 0.00 3.53
2802 4051 1.900245 AACCGCTTTTACCGTTGGAT 58.100 45.000 0.00 0.00 0.00 3.41
2803 4052 1.900245 ACCGCTTTTACCGTTGGATT 58.100 45.000 0.00 0.00 0.00 3.01
2804 4053 1.808343 ACCGCTTTTACCGTTGGATTC 59.192 47.619 0.00 0.00 0.00 2.52
2805 4054 1.131693 CCGCTTTTACCGTTGGATTCC 59.868 52.381 0.00 0.00 0.00 3.01
2806 4055 2.081462 CGCTTTTACCGTTGGATTCCT 58.919 47.619 3.95 0.00 0.00 3.36
2807 4056 2.095372 CGCTTTTACCGTTGGATTCCTC 59.905 50.000 3.95 0.00 0.00 3.71
2808 4057 2.095372 GCTTTTACCGTTGGATTCCTCG 59.905 50.000 3.95 8.76 0.00 4.63
2809 4058 1.729284 TTTACCGTTGGATTCCTCGC 58.271 50.000 3.95 0.00 0.00 5.03
2810 4059 0.458889 TTACCGTTGGATTCCTCGCG 60.459 55.000 0.00 0.00 0.00 5.87
2811 4060 1.597797 TACCGTTGGATTCCTCGCGT 61.598 55.000 5.77 10.67 0.00 6.01
2812 4061 2.165301 CCGTTGGATTCCTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
2813 4062 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
2814 4063 1.153901 GTTGGATTCCTCGCGTCGA 60.154 57.895 5.77 0.00 0.00 4.20
2825 4074 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
2826 4075 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
2827 4076 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
2828 4077 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
2829 4078 3.238570 CGCGTCGAGATCTTCAAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
2830 4079 4.413087 GCGTCGAGATCTTCAAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
2831 4080 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
2832 4081 5.172411 GCGTCGAGATCTTCAAAACTAGATC 59.828 44.000 0.00 0.00 37.89 2.75
2833 4082 5.683743 CGTCGAGATCTTCAAAACTAGATCC 59.316 44.000 0.00 1.33 38.24 3.36
2834 4083 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
2835 4084 5.656859 TCGAGATCTTCAAAACTAGATCCCA 59.343 40.000 0.00 0.00 38.24 4.37
2836 4085 6.325028 TCGAGATCTTCAAAACTAGATCCCAT 59.675 38.462 0.00 0.00 38.24 4.00
2837 4086 6.423302 CGAGATCTTCAAAACTAGATCCCATG 59.577 42.308 0.00 0.00 38.24 3.66
2838 4087 7.205515 AGATCTTCAAAACTAGATCCCATGT 57.794 36.000 0.00 0.00 38.24 3.21
2839 4088 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
2840 4089 8.772250 AGATCTTCAAAACTAGATCCCATGTTA 58.228 33.333 0.00 0.00 38.24 2.41
2841 4090 9.396022 GATCTTCAAAACTAGATCCCATGTTAA 57.604 33.333 0.00 0.00 33.15 2.01
2842 4091 9.927081 ATCTTCAAAACTAGATCCCATGTTAAT 57.073 29.630 0.00 0.00 0.00 1.40
2845 4094 9.627123 TTCAAAACTAGATCCCATGTTAATAGG 57.373 33.333 0.00 0.00 0.00 2.57
2846 4095 8.778059 TCAAAACTAGATCCCATGTTAATAGGT 58.222 33.333 0.00 0.00 0.00 3.08
2847 4096 9.408648 CAAAACTAGATCCCATGTTAATAGGTT 57.591 33.333 0.00 0.00 0.00 3.50
2848 4097 9.990868 AAAACTAGATCCCATGTTAATAGGTTT 57.009 29.630 0.00 0.00 0.00 3.27
2849 4098 9.990868 AAACTAGATCCCATGTTAATAGGTTTT 57.009 29.630 0.00 0.00 0.00 2.43
2850 4099 8.980481 ACTAGATCCCATGTTAATAGGTTTTG 57.020 34.615 0.00 0.00 0.00 2.44
2851 4100 8.778059 ACTAGATCCCATGTTAATAGGTTTTGA 58.222 33.333 0.00 0.00 0.00 2.69
2852 4101 7.881775 AGATCCCATGTTAATAGGTTTTGAC 57.118 36.000 0.00 0.00 0.00 3.18
2853 4102 6.542370 AGATCCCATGTTAATAGGTTTTGACG 59.458 38.462 0.00 0.00 0.00 4.35
2854 4103 5.806818 TCCCATGTTAATAGGTTTTGACGA 58.193 37.500 0.00 0.00 0.00 4.20
2855 4104 6.239396 TCCCATGTTAATAGGTTTTGACGAA 58.761 36.000 0.00 0.00 0.00 3.85
2856 4105 6.149807 TCCCATGTTAATAGGTTTTGACGAAC 59.850 38.462 0.00 0.00 0.00 3.95
2857 4106 6.150474 CCCATGTTAATAGGTTTTGACGAACT 59.850 38.462 0.00 0.00 0.00 3.01
2858 4107 7.308951 CCCATGTTAATAGGTTTTGACGAACTT 60.309 37.037 0.00 0.00 0.00 2.66
2859 4108 8.079809 CCATGTTAATAGGTTTTGACGAACTTT 58.920 33.333 0.00 0.00 0.00 2.66
2860 4109 9.458374 CATGTTAATAGGTTTTGACGAACTTTT 57.542 29.630 0.00 0.00 0.00 2.27
2880 4129 4.625972 TTTTTCACAAGAAGAACCGTCC 57.374 40.909 0.00 0.00 34.71 4.79
2881 4130 2.992124 TTCACAAGAAGAACCGTCCA 57.008 45.000 0.00 0.00 0.00 4.02
2882 4131 2.992124 TCACAAGAAGAACCGTCCAA 57.008 45.000 0.00 0.00 0.00 3.53
2883 4132 3.269538 TCACAAGAAGAACCGTCCAAA 57.730 42.857 0.00 0.00 0.00 3.28
2884 4133 3.611970 TCACAAGAAGAACCGTCCAAAA 58.388 40.909 0.00 0.00 0.00 2.44
2885 4134 4.011023 TCACAAGAAGAACCGTCCAAAAA 58.989 39.130 0.00 0.00 0.00 1.94
2906 4155 2.890371 CGAATCGGGAGAACGGGT 59.110 61.111 0.00 0.00 45.37 5.28
2907 4156 1.217244 CGAATCGGGAGAACGGGTT 59.783 57.895 0.00 0.00 45.37 4.11
2908 4157 0.390735 CGAATCGGGAGAACGGGTTT 60.391 55.000 0.00 0.00 45.37 3.27
2909 4158 1.817357 GAATCGGGAGAACGGGTTTT 58.183 50.000 0.00 0.00 45.37 2.43
2910 4159 2.156917 GAATCGGGAGAACGGGTTTTT 58.843 47.619 0.00 0.00 45.37 1.94
2928 4177 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
2929 4178 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
2930 4179 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.000 20.43 0.00 41.02 5.01
2931 4180 1.298859 CCCTTTCCGAAAGAGGCACG 61.299 60.000 20.43 4.41 41.02 5.34
2932 4181 1.497722 CTTTCCGAAAGAGGCACGC 59.502 57.895 14.72 0.00 41.02 5.34
2933 4182 1.912371 CTTTCCGAAAGAGGCACGCC 61.912 60.000 14.72 0.00 41.02 5.68
2934 4183 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
2954 4203 1.795768 GTGCCTCTCACGAAATCACA 58.204 50.000 0.00 0.00 35.76 3.58
2955 4204 1.461127 GTGCCTCTCACGAAATCACAC 59.539 52.381 0.00 0.00 35.76 3.82
2956 4205 1.344438 TGCCTCTCACGAAATCACACT 59.656 47.619 0.00 0.00 0.00 3.55
2957 4206 1.996191 GCCTCTCACGAAATCACACTC 59.004 52.381 0.00 0.00 0.00 3.51
2958 4207 2.254459 CCTCTCACGAAATCACACTCG 58.746 52.381 0.00 0.00 40.87 4.18
2962 4211 2.528797 ACGAAATCACACTCGTGCC 58.471 52.632 0.00 0.00 46.01 5.01
2963 4212 0.033504 ACGAAATCACACTCGTGCCT 59.966 50.000 0.00 0.00 46.01 4.75
2964 4213 0.716108 CGAAATCACACTCGTGCCTC 59.284 55.000 0.00 0.00 43.28 4.70
2965 4214 1.670087 CGAAATCACACTCGTGCCTCT 60.670 52.381 0.00 0.00 43.28 3.69
2966 4215 1.996191 GAAATCACACTCGTGCCTCTC 59.004 52.381 0.00 0.00 43.28 3.20
2967 4216 0.109086 AATCACACTCGTGCCTCTCG 60.109 55.000 0.00 0.00 43.28 4.04
2968 4217 2.549611 ATCACACTCGTGCCTCTCGC 62.550 60.000 0.00 0.00 43.28 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 134 1.803943 CCCTCTTCGTCTCCGACAG 59.196 63.158 0.00 0.00 44.13 3.51
134 136 1.596895 AAGCCCTCTTCGTCTCCGAC 61.597 60.000 0.00 0.00 44.13 4.79
141 143 2.657237 CCGTCAAGCCCTCTTCGT 59.343 61.111 0.00 0.00 0.00 3.85
155 157 2.572290 CCAGAAAGAGTTTTCACCCGT 58.428 47.619 3.21 0.00 44.14 5.28
205 208 0.174845 CAAGAAGGATACGACGCCCA 59.825 55.000 0.00 0.00 46.39 5.36
229 232 1.269413 GGAAGAGGAACAACGACGACA 60.269 52.381 0.00 0.00 0.00 4.35
238 241 0.114560 ACGGAGGAGGAAGAGGAACA 59.885 55.000 0.00 0.00 0.00 3.18
290 293 4.151582 TAAGTACCGCCAGCGCCC 62.152 66.667 2.29 0.00 38.24 6.13
295 298 1.153429 GGCACCTAAGTACCGCCAG 60.153 63.158 0.00 0.00 42.50 4.85
333 336 1.404986 CGAACCGATTACTCCAAGGCA 60.405 52.381 0.00 0.00 0.00 4.75
433 439 2.559668 CACAACTCCAAGCCATCAACAT 59.440 45.455 0.00 0.00 0.00 2.71
437 443 1.955778 CAACACAACTCCAAGCCATCA 59.044 47.619 0.00 0.00 0.00 3.07
502 508 3.074412 CTCATACAACTCCACACCAACC 58.926 50.000 0.00 0.00 0.00 3.77
546 552 9.309224 GGCTTTCACCCCACTTTATATATAAAT 57.691 33.333 16.41 6.42 32.36 1.40
560 566 1.036707 CGAAAAAGGCTTTCACCCCA 58.963 50.000 13.76 0.00 0.00 4.96
565 571 4.403734 AGGAATACCGAAAAAGGCTTTCA 58.596 39.130 13.76 0.00 41.83 2.69
583 589 4.466015 AGGCAAGACAAACAAAAAGAGGAA 59.534 37.500 0.00 0.00 0.00 3.36
584 590 4.023291 AGGCAAGACAAACAAAAAGAGGA 58.977 39.130 0.00 0.00 0.00 3.71
585 591 4.391405 AGGCAAGACAAACAAAAAGAGG 57.609 40.909 0.00 0.00 0.00 3.69
586 592 6.726258 AAAAGGCAAGACAAACAAAAAGAG 57.274 33.333 0.00 0.00 0.00 2.85
650 656 5.741388 AAGATCGAACAATACAAGGCATC 57.259 39.130 0.00 0.00 0.00 3.91
651 657 6.992123 TCATAAGATCGAACAATACAAGGCAT 59.008 34.615 0.00 0.00 0.00 4.40
652 658 6.345298 TCATAAGATCGAACAATACAAGGCA 58.655 36.000 0.00 0.00 0.00 4.75
653 659 6.844696 TCATAAGATCGAACAATACAAGGC 57.155 37.500 0.00 0.00 0.00 4.35
654 660 7.348201 GCTTCATAAGATCGAACAATACAAGG 58.652 38.462 0.00 0.00 0.00 3.61
655 661 7.225538 AGGCTTCATAAGATCGAACAATACAAG 59.774 37.037 0.00 0.00 0.00 3.16
657 663 6.582636 AGGCTTCATAAGATCGAACAATACA 58.417 36.000 0.00 0.00 0.00 2.29
658 664 8.764524 ATAGGCTTCATAAGATCGAACAATAC 57.235 34.615 0.00 0.00 0.00 1.89
660 666 8.682936 AAATAGGCTTCATAAGATCGAACAAT 57.317 30.769 0.00 0.00 0.00 2.71
663 669 7.715265 TGAAATAGGCTTCATAAGATCGAAC 57.285 36.000 0.00 0.00 30.31 3.95
664 670 8.150296 TCATGAAATAGGCTTCATAAGATCGAA 58.850 33.333 0.00 0.00 42.79 3.71
695 702 1.760029 TGTACCAGCATAAGATCGCCA 59.240 47.619 0.00 0.00 0.00 5.69
721 728 1.021390 CAGGGATCGTGCTTCCACAC 61.021 60.000 0.00 0.00 42.17 3.82
753 760 6.156519 TCGATTTTTCTCAGATTCAACGAGA 58.843 36.000 0.00 0.00 34.04 4.04
781 788 2.037121 TCCTCTTTGATTGCTGTCGACA 59.963 45.455 18.88 18.88 0.00 4.35
782 789 2.670414 CTCCTCTTTGATTGCTGTCGAC 59.330 50.000 9.11 9.11 0.00 4.20
783 790 2.562738 TCTCCTCTTTGATTGCTGTCGA 59.437 45.455 0.00 0.00 0.00 4.20
784 791 2.670414 GTCTCCTCTTTGATTGCTGTCG 59.330 50.000 0.00 0.00 0.00 4.35
785 792 3.668447 TGTCTCCTCTTTGATTGCTGTC 58.332 45.455 0.00 0.00 0.00 3.51
786 793 3.672808 CTGTCTCCTCTTTGATTGCTGT 58.327 45.455 0.00 0.00 0.00 4.40
787 794 2.419324 GCTGTCTCCTCTTTGATTGCTG 59.581 50.000 0.00 0.00 0.00 4.41
788 795 2.039480 TGCTGTCTCCTCTTTGATTGCT 59.961 45.455 0.00 0.00 0.00 3.91
789 796 2.161211 GTGCTGTCTCCTCTTTGATTGC 59.839 50.000 0.00 0.00 0.00 3.56
790 797 2.414481 CGTGCTGTCTCCTCTTTGATTG 59.586 50.000 0.00 0.00 0.00 2.67
791 798 2.037772 ACGTGCTGTCTCCTCTTTGATT 59.962 45.455 0.00 0.00 0.00 2.57
792 799 1.620819 ACGTGCTGTCTCCTCTTTGAT 59.379 47.619 0.00 0.00 0.00 2.57
793 800 1.040646 ACGTGCTGTCTCCTCTTTGA 58.959 50.000 0.00 0.00 0.00 2.69
794 801 1.143305 CACGTGCTGTCTCCTCTTTG 58.857 55.000 0.82 0.00 0.00 2.77
795 802 0.601311 GCACGTGCTGTCTCCTCTTT 60.601 55.000 32.55 0.00 38.21 2.52
796 803 1.005630 GCACGTGCTGTCTCCTCTT 60.006 57.895 32.55 0.00 38.21 2.85
797 804 2.653702 GCACGTGCTGTCTCCTCT 59.346 61.111 32.55 0.00 38.21 3.69
798 805 2.807045 CGCACGTGCTGTCTCCTC 60.807 66.667 35.27 6.46 39.32 3.71
799 806 4.363990 CCGCACGTGCTGTCTCCT 62.364 66.667 35.27 0.00 39.32 3.69
800 807 3.649277 ATCCGCACGTGCTGTCTCC 62.649 63.158 35.27 7.97 39.32 3.71
801 808 2.125912 ATCCGCACGTGCTGTCTC 60.126 61.111 35.27 8.73 39.32 3.36
802 809 2.433145 CATCCGCACGTGCTGTCT 60.433 61.111 35.27 18.99 39.32 3.41
803 810 1.361668 ATTCATCCGCACGTGCTGTC 61.362 55.000 35.27 9.88 39.32 3.51
804 811 1.361668 GATTCATCCGCACGTGCTGT 61.362 55.000 35.27 19.47 39.32 4.40
805 812 1.349627 GATTCATCCGCACGTGCTG 59.650 57.895 35.27 29.77 39.32 4.41
814 821 2.009774 GGCCCAATATCGATTCATCCG 58.990 52.381 1.71 0.00 0.00 4.18
820 827 2.158475 ACACCATGGCCCAATATCGATT 60.158 45.455 13.04 0.00 0.00 3.34
857 865 4.154347 GCGCTCTAGCCCAGCACT 62.154 66.667 0.00 0.00 36.61 4.40
1073 1384 3.190849 CGTGGCTCTGGTGCATCG 61.191 66.667 0.00 0.00 34.04 3.84
1204 1515 2.515523 GCCGAGGCACTGCATGAT 60.516 61.111 9.58 0.00 41.55 2.45
1297 1608 3.168528 ATTATCCACCCCGGCGCT 61.169 61.111 7.64 0.00 33.14 5.92
1341 1652 3.867723 CGTTGTCGTCTCCAAGTCT 57.132 52.632 0.00 0.00 0.00 3.24
1362 1673 0.660595 CGTGGATAGCGATGTCGACC 60.661 60.000 14.12 0.00 43.02 4.79
1408 1719 1.531365 TGGCAGCTTTGGTTCCTGG 60.531 57.895 0.00 0.00 0.00 4.45
1414 1725 2.521708 GGTGGTGGCAGCTTTGGT 60.522 61.111 18.53 0.00 0.00 3.67
1558 1875 1.903877 CTCCTGCACTCCGATGGGTT 61.904 60.000 0.00 0.00 33.83 4.11
1566 1883 1.594310 GTCACTCCTCCTGCACTCC 59.406 63.158 0.00 0.00 0.00 3.85
1577 1894 3.774702 GTTTCGCGCCGTCACTCC 61.775 66.667 0.00 0.00 0.00 3.85
1723 2040 1.596752 CGCAGTTGTGGCACCAGTA 60.597 57.895 16.26 0.00 0.00 2.74
1779 2096 4.641645 CACAGCGTCTTGGGCCCA 62.642 66.667 24.45 24.45 0.00 5.36
1962 2279 3.394674 TGCGTCAGGTTTAATCAGTCA 57.605 42.857 0.00 0.00 0.00 3.41
2007 2324 6.054295 GGATACGAGGAAGTAAGACTGTCTA 58.946 44.000 11.30 0.00 0.00 2.59
2021 2338 5.335426 GCGACAAGTAATATGGATACGAGGA 60.335 44.000 0.00 0.00 42.51 3.71
2026 2343 8.813643 AAAGTAGCGACAAGTAATATGGATAC 57.186 34.615 0.00 0.00 0.00 2.24
2030 2347 9.698617 GTTTTAAAGTAGCGACAAGTAATATGG 57.301 33.333 0.00 0.00 0.00 2.74
2041 2358 6.202815 AGTTGTACGTTTTAAAGTAGCGAC 57.797 37.500 0.00 0.00 0.00 5.19
2081 2398 3.790089 AGAAAACACTCCCTCCGATTT 57.210 42.857 0.00 0.00 0.00 2.17
2186 2510 7.588512 AGTAGCAACTGAAAATAGAAAGCAAG 58.411 34.615 0.00 0.00 33.57 4.01
2233 3460 3.005050 ACCAACAACTCATCATGCAACTG 59.995 43.478 0.00 0.00 0.00 3.16
2260 3487 7.781324 AGATTGTGGGAAAAATAGTCATGTT 57.219 32.000 0.00 0.00 0.00 2.71
2274 3502 6.726379 TGGAATGTACATTTAGATTGTGGGA 58.274 36.000 21.63 0.00 0.00 4.37
2302 3530 6.798427 AGAGTAATTTCATGAGAGCACCTA 57.202 37.500 0.00 0.00 0.00 3.08
2331 3559 5.310720 ACCGAATAAGTTCCAATTTCAGC 57.689 39.130 0.00 0.00 0.00 4.26
2341 3570 4.387862 TGCGAAAGAGAACCGAATAAGTTC 59.612 41.667 0.00 0.00 43.22 3.01
2361 3590 8.238481 ACTAACATTCAATTTGGTATTTTGCG 57.762 30.769 0.00 0.00 0.00 4.85
2417 3657 3.385115 CAAGGATAGTTCTACACCCCCT 58.615 50.000 0.00 0.00 0.00 4.79
2420 3662 2.483188 CGCCAAGGATAGTTCTACACCC 60.483 54.545 0.00 0.00 0.00 4.61
2421 3663 2.429610 TCGCCAAGGATAGTTCTACACC 59.570 50.000 0.00 0.00 0.00 4.16
2422 3664 3.795623 TCGCCAAGGATAGTTCTACAC 57.204 47.619 0.00 0.00 0.00 2.90
2427 3669 2.139118 GCTCATCGCCAAGGATAGTTC 58.861 52.381 0.00 0.00 0.00 3.01
2468 3711 5.658190 ACATAAGCAATTCTAAGGTGCCATT 59.342 36.000 0.00 0.00 39.13 3.16
2469 3712 5.203528 ACATAAGCAATTCTAAGGTGCCAT 58.796 37.500 0.00 0.00 39.13 4.40
2506 3751 6.660521 AGCTTGTGGATGAACATGAGAATTAA 59.339 34.615 0.00 0.00 0.00 1.40
2598 3847 2.287368 GGAAAACGTTGATTTGGCTCGT 60.287 45.455 0.00 0.00 36.31 4.18
2599 3848 2.315901 GGAAAACGTTGATTTGGCTCG 58.684 47.619 0.00 0.00 0.00 5.03
2600 3849 2.035321 TGGGAAAACGTTGATTTGGCTC 59.965 45.455 0.00 0.00 0.00 4.70
2601 3850 2.035632 TGGGAAAACGTTGATTTGGCT 58.964 42.857 0.00 0.00 0.00 4.75
2602 3851 2.517650 TGGGAAAACGTTGATTTGGC 57.482 45.000 0.00 0.00 0.00 4.52
2603 3852 7.665561 ATAAATTGGGAAAACGTTGATTTGG 57.334 32.000 0.00 0.00 0.00 3.28
2605 3854 9.765795 TGTAATAAATTGGGAAAACGTTGATTT 57.234 25.926 0.00 5.15 0.00 2.17
2606 3855 9.936759 ATGTAATAAATTGGGAAAACGTTGATT 57.063 25.926 0.00 0.00 0.00 2.57
2607 3856 9.364989 CATGTAATAAATTGGGAAAACGTTGAT 57.635 29.630 0.00 0.00 0.00 2.57
2608 3857 8.577296 TCATGTAATAAATTGGGAAAACGTTGA 58.423 29.630 0.00 0.00 0.00 3.18
2609 3858 8.749841 TCATGTAATAAATTGGGAAAACGTTG 57.250 30.769 0.00 0.00 0.00 4.10
2610 3859 9.936759 ATTCATGTAATAAATTGGGAAAACGTT 57.063 25.926 0.00 0.00 0.00 3.99
2611 3860 9.936759 AATTCATGTAATAAATTGGGAAAACGT 57.063 25.926 0.00 0.00 0.00 3.99
2625 3874 9.173021 ACTCGGTTCAATTCAATTCATGTAATA 57.827 29.630 0.00 0.00 0.00 0.98
2626 3875 8.055279 ACTCGGTTCAATTCAATTCATGTAAT 57.945 30.769 0.00 0.00 0.00 1.89
2627 3876 7.447374 ACTCGGTTCAATTCAATTCATGTAA 57.553 32.000 0.00 0.00 0.00 2.41
2628 3877 6.183360 CGACTCGGTTCAATTCAATTCATGTA 60.183 38.462 0.00 0.00 0.00 2.29
2629 3878 5.390885 CGACTCGGTTCAATTCAATTCATGT 60.391 40.000 0.00 0.00 0.00 3.21
2630 3879 5.023920 CGACTCGGTTCAATTCAATTCATG 58.976 41.667 0.00 0.00 0.00 3.07
2631 3880 4.935205 TCGACTCGGTTCAATTCAATTCAT 59.065 37.500 0.00 0.00 0.00 2.57
2632 3881 4.151689 GTCGACTCGGTTCAATTCAATTCA 59.848 41.667 8.70 0.00 0.00 2.57
2633 3882 4.151689 TGTCGACTCGGTTCAATTCAATTC 59.848 41.667 17.92 0.00 0.00 2.17
2634 3883 4.062293 TGTCGACTCGGTTCAATTCAATT 58.938 39.130 17.92 0.00 0.00 2.32
2635 3884 3.659786 TGTCGACTCGGTTCAATTCAAT 58.340 40.909 17.92 0.00 0.00 2.57
2636 3885 3.100658 TGTCGACTCGGTTCAATTCAA 57.899 42.857 17.92 0.00 0.00 2.69
2637 3886 2.798283 GTTGTCGACTCGGTTCAATTCA 59.202 45.455 17.92 0.00 0.00 2.57
2638 3887 2.798283 TGTTGTCGACTCGGTTCAATTC 59.202 45.455 17.92 0.00 0.00 2.17
2639 3888 2.542595 GTGTTGTCGACTCGGTTCAATT 59.457 45.455 17.92 0.00 0.00 2.32
2640 3889 2.132762 GTGTTGTCGACTCGGTTCAAT 58.867 47.619 17.92 0.00 0.00 2.57
2641 3890 1.563111 GTGTTGTCGACTCGGTTCAA 58.437 50.000 17.92 0.00 0.00 2.69
2642 3891 0.249155 GGTGTTGTCGACTCGGTTCA 60.249 55.000 17.92 4.25 0.00 3.18
2643 3892 0.942884 GGGTGTTGTCGACTCGGTTC 60.943 60.000 17.92 2.27 0.00 3.62
2644 3893 1.068585 GGGTGTTGTCGACTCGGTT 59.931 57.895 17.92 0.00 0.00 4.44
2645 3894 2.732658 GGGTGTTGTCGACTCGGT 59.267 61.111 17.92 0.00 0.00 4.69
2646 3895 2.048503 GGGGTGTTGTCGACTCGG 60.049 66.667 17.92 0.00 0.00 4.63
2647 3896 1.068417 TTGGGGTGTTGTCGACTCG 59.932 57.895 17.92 0.00 0.00 4.18
2648 3897 0.106149 AGTTGGGGTGTTGTCGACTC 59.894 55.000 17.92 10.45 0.00 3.36
2649 3898 0.106149 GAGTTGGGGTGTTGTCGACT 59.894 55.000 17.92 0.00 0.00 4.18
2650 3899 0.883370 GGAGTTGGGGTGTTGTCGAC 60.883 60.000 9.11 9.11 0.00 4.20
2651 3900 1.448497 GGAGTTGGGGTGTTGTCGA 59.552 57.895 0.00 0.00 0.00 4.20
2652 3901 1.599797 GGGAGTTGGGGTGTTGTCG 60.600 63.158 0.00 0.00 0.00 4.35
2653 3902 0.537371 CTGGGAGTTGGGGTGTTGTC 60.537 60.000 0.00 0.00 0.00 3.18
2654 3903 1.536676 CTGGGAGTTGGGGTGTTGT 59.463 57.895 0.00 0.00 0.00 3.32
2655 3904 1.228552 CCTGGGAGTTGGGGTGTTG 60.229 63.158 0.00 0.00 0.00 3.33
2656 3905 1.293683 AACCTGGGAGTTGGGGTGTT 61.294 55.000 0.00 0.00 31.87 3.32
2657 3906 1.699930 AACCTGGGAGTTGGGGTGT 60.700 57.895 0.00 0.00 31.87 4.16
2658 3907 1.228552 CAACCTGGGAGTTGGGGTG 60.229 63.158 0.00 0.00 42.79 4.61
2659 3908 1.386772 TCAACCTGGGAGTTGGGGT 60.387 57.895 0.00 0.00 45.81 4.95
2660 3909 1.380302 CTCAACCTGGGAGTTGGGG 59.620 63.158 0.00 0.00 43.28 4.96
2661 3910 1.133809 TCCTCAACCTGGGAGTTGGG 61.134 60.000 0.00 1.10 46.00 4.12
2662 3911 0.326264 CTCCTCAACCTGGGAGTTGG 59.674 60.000 0.00 0.00 45.81 3.77
2663 3912 3.944476 CTCCTCAACCTGGGAGTTG 57.056 57.895 0.00 0.00 46.90 3.16
2667 3916 0.842030 ATGTGCTCCTCAACCTGGGA 60.842 55.000 0.00 0.00 0.00 4.37
2668 3917 0.679002 CATGTGCTCCTCAACCTGGG 60.679 60.000 0.00 0.00 0.00 4.45
2669 3918 1.310933 GCATGTGCTCCTCAACCTGG 61.311 60.000 0.00 0.00 38.21 4.45
2670 3919 0.607217 TGCATGTGCTCCTCAACCTG 60.607 55.000 6.55 0.00 42.66 4.00
2671 3920 0.322277 CTGCATGTGCTCCTCAACCT 60.322 55.000 6.55 0.00 42.66 3.50
2672 3921 1.930908 GCTGCATGTGCTCCTCAACC 61.931 60.000 6.55 0.00 42.66 3.77
2673 3922 1.505353 GCTGCATGTGCTCCTCAAC 59.495 57.895 6.55 0.00 42.66 3.18
2674 3923 2.036571 CGCTGCATGTGCTCCTCAA 61.037 57.895 6.55 0.00 42.66 3.02
2675 3924 2.435410 CGCTGCATGTGCTCCTCA 60.435 61.111 6.55 0.00 42.66 3.86
2694 3943 4.025401 CCGGTTGCGACAAGTGGC 62.025 66.667 6.39 0.00 34.76 5.01
2695 3944 3.353836 CCCGGTTGCGACAAGTGG 61.354 66.667 6.39 1.83 0.00 4.00
2696 3945 3.353836 CCCCGGTTGCGACAAGTG 61.354 66.667 6.39 0.00 0.00 3.16
2697 3946 2.897172 AAACCCCGGTTGCGACAAGT 62.897 55.000 6.39 0.00 38.47 3.16
2698 3947 1.730451 AAAACCCCGGTTGCGACAAG 61.730 55.000 6.39 0.00 38.47 3.16
2699 3948 1.321074 AAAAACCCCGGTTGCGACAA 61.321 50.000 6.39 0.00 38.47 3.18
2700 3949 1.753463 AAAAACCCCGGTTGCGACA 60.753 52.632 6.39 0.00 38.47 4.35
2701 3950 3.121934 AAAAACCCCGGTTGCGAC 58.878 55.556 0.00 0.00 38.47 5.19
2745 3994 9.559958 CGCACAGTTTGAGAGATAAAATATTTT 57.440 29.630 17.18 17.18 0.00 1.82
2746 3995 8.730680 ACGCACAGTTTGAGAGATAAAATATTT 58.269 29.630 0.00 0.00 0.00 1.40
2747 3996 8.268850 ACGCACAGTTTGAGAGATAAAATATT 57.731 30.769 0.00 0.00 0.00 1.28
2748 3997 7.011482 GGACGCACAGTTTGAGAGATAAAATAT 59.989 37.037 0.00 0.00 0.00 1.28
2749 3998 6.312918 GGACGCACAGTTTGAGAGATAAAATA 59.687 38.462 0.00 0.00 0.00 1.40
2750 3999 5.122396 GGACGCACAGTTTGAGAGATAAAAT 59.878 40.000 0.00 0.00 0.00 1.82
2751 4000 4.451096 GGACGCACAGTTTGAGAGATAAAA 59.549 41.667 0.00 0.00 0.00 1.52
2752 4001 3.994392 GGACGCACAGTTTGAGAGATAAA 59.006 43.478 0.00 0.00 0.00 1.40
2753 4002 3.006430 TGGACGCACAGTTTGAGAGATAA 59.994 43.478 0.00 0.00 0.00 1.75
2754 4003 2.560981 TGGACGCACAGTTTGAGAGATA 59.439 45.455 0.00 0.00 0.00 1.98
2755 4004 1.344438 TGGACGCACAGTTTGAGAGAT 59.656 47.619 0.00 0.00 0.00 2.75
2756 4005 0.750249 TGGACGCACAGTTTGAGAGA 59.250 50.000 0.00 0.00 0.00 3.10
2757 4006 1.581934 TTGGACGCACAGTTTGAGAG 58.418 50.000 0.00 0.00 0.00 3.20
2758 4007 2.031258 TTTGGACGCACAGTTTGAGA 57.969 45.000 0.00 0.00 0.00 3.27
2759 4008 2.549754 AGATTTGGACGCACAGTTTGAG 59.450 45.455 0.00 0.00 0.00 3.02
2760 4009 2.548057 GAGATTTGGACGCACAGTTTGA 59.452 45.455 0.00 0.00 0.00 2.69
2761 4010 2.290367 TGAGATTTGGACGCACAGTTTG 59.710 45.455 0.00 0.00 0.00 2.93
2762 4011 2.571212 TGAGATTTGGACGCACAGTTT 58.429 42.857 0.00 0.00 0.00 2.66
2763 4012 2.254546 TGAGATTTGGACGCACAGTT 57.745 45.000 0.00 0.00 0.00 3.16
2764 4013 2.254546 TTGAGATTTGGACGCACAGT 57.745 45.000 0.00 0.00 0.00 3.55
2765 4014 2.350772 GGTTTGAGATTTGGACGCACAG 60.351 50.000 0.00 0.00 0.00 3.66
2766 4015 1.606668 GGTTTGAGATTTGGACGCACA 59.393 47.619 0.00 0.00 0.00 4.57
2767 4016 1.399727 CGGTTTGAGATTTGGACGCAC 60.400 52.381 0.00 0.00 0.00 5.34
2768 4017 0.871722 CGGTTTGAGATTTGGACGCA 59.128 50.000 0.00 0.00 0.00 5.24
2769 4018 0.454452 GCGGTTTGAGATTTGGACGC 60.454 55.000 0.00 0.00 38.94 5.19
2770 4019 1.156736 AGCGGTTTGAGATTTGGACG 58.843 50.000 0.00 0.00 0.00 4.79
2771 4020 3.643159 AAAGCGGTTTGAGATTTGGAC 57.357 42.857 12.53 0.00 0.00 4.02
2772 4021 4.022676 GGTAAAAGCGGTTTGAGATTTGGA 60.023 41.667 14.16 0.00 0.00 3.53
2773 4022 4.234574 GGTAAAAGCGGTTTGAGATTTGG 58.765 43.478 14.16 0.00 0.00 3.28
2774 4023 3.911964 CGGTAAAAGCGGTTTGAGATTTG 59.088 43.478 14.16 0.00 35.16 2.32
2775 4024 3.566742 ACGGTAAAAGCGGTTTGAGATTT 59.433 39.130 14.16 0.00 44.33 2.17
2776 4025 3.143728 ACGGTAAAAGCGGTTTGAGATT 58.856 40.909 14.16 0.00 44.33 2.40
2777 4026 2.774687 ACGGTAAAAGCGGTTTGAGAT 58.225 42.857 14.16 0.00 44.33 2.75
2778 4027 2.243602 ACGGTAAAAGCGGTTTGAGA 57.756 45.000 14.16 0.00 44.33 3.27
2779 4028 2.603652 CCAACGGTAAAAGCGGTTTGAG 60.604 50.000 14.16 7.91 44.33 3.02
2780 4029 1.334243 CCAACGGTAAAAGCGGTTTGA 59.666 47.619 14.16 2.54 44.33 2.69
2781 4030 1.334243 TCCAACGGTAAAAGCGGTTTG 59.666 47.619 14.16 3.44 44.33 2.93
2782 4031 1.677942 TCCAACGGTAAAAGCGGTTT 58.322 45.000 6.80 6.80 44.33 3.27
2783 4032 1.900245 ATCCAACGGTAAAAGCGGTT 58.100 45.000 0.00 0.00 44.33 4.44
2784 4033 1.808343 GAATCCAACGGTAAAAGCGGT 59.192 47.619 3.43 0.00 44.33 5.68
2785 4034 1.131693 GGAATCCAACGGTAAAAGCGG 59.868 52.381 0.00 0.00 44.33 5.52
2786 4035 2.081462 AGGAATCCAACGGTAAAAGCG 58.919 47.619 0.61 0.00 45.69 4.68
2787 4036 2.095372 CGAGGAATCCAACGGTAAAAGC 59.905 50.000 0.61 0.00 0.00 3.51
2788 4037 2.095372 GCGAGGAATCCAACGGTAAAAG 59.905 50.000 17.17 0.00 0.00 2.27
2789 4038 2.078392 GCGAGGAATCCAACGGTAAAA 58.922 47.619 17.17 0.00 0.00 1.52
2790 4039 1.729284 GCGAGGAATCCAACGGTAAA 58.271 50.000 17.17 0.00 0.00 2.01
2791 4040 0.458889 CGCGAGGAATCCAACGGTAA 60.459 55.000 17.17 0.00 0.00 2.85
2792 4041 1.140161 CGCGAGGAATCCAACGGTA 59.860 57.895 17.17 0.00 0.00 4.02
2793 4042 2.125673 CGCGAGGAATCCAACGGT 60.126 61.111 17.17 0.00 0.00 4.83
2794 4043 2.125673 ACGCGAGGAATCCAACGG 60.126 61.111 15.93 11.24 0.00 4.44
2795 4044 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
2796 4045 1.153901 TCGACGCGAGGAATCCAAC 60.154 57.895 15.93 0.00 0.00 3.77
2797 4046 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
2806 4055 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
2807 4056 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
2808 4057 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
2809 4058 5.683743 GGATCTAGTTTTGAAGATCTCGACG 59.316 44.000 11.05 0.00 37.77 5.12
2810 4059 5.980715 GGGATCTAGTTTTGAAGATCTCGAC 59.019 44.000 11.05 0.00 37.77 4.20
2811 4060 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
2812 4061 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
2813 4062 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
2814 4063 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
2815 4064 7.872113 AACATGGGATCTAGTTTTGAAGATC 57.128 36.000 0.00 4.15 37.15 2.75
2816 4065 9.927081 ATTAACATGGGATCTAGTTTTGAAGAT 57.073 29.630 0.00 0.00 0.00 2.40
2819 4068 9.627123 CCTATTAACATGGGATCTAGTTTTGAA 57.373 33.333 0.00 0.00 32.51 2.69
2820 4069 8.778059 ACCTATTAACATGGGATCTAGTTTTGA 58.222 33.333 0.00 0.00 34.53 2.69
2821 4070 8.980481 ACCTATTAACATGGGATCTAGTTTTG 57.020 34.615 0.00 0.00 34.53 2.44
2822 4071 9.990868 AAACCTATTAACATGGGATCTAGTTTT 57.009 29.630 0.00 0.00 34.53 2.43
2823 4072 9.990868 AAAACCTATTAACATGGGATCTAGTTT 57.009 29.630 0.00 0.00 34.53 2.66
2824 4073 9.408648 CAAAACCTATTAACATGGGATCTAGTT 57.591 33.333 0.00 0.00 34.53 2.24
2825 4074 8.778059 TCAAAACCTATTAACATGGGATCTAGT 58.222 33.333 0.00 0.00 34.53 2.57
2826 4075 9.057089 GTCAAAACCTATTAACATGGGATCTAG 57.943 37.037 0.00 0.00 34.53 2.43
2827 4076 7.713507 CGTCAAAACCTATTAACATGGGATCTA 59.286 37.037 0.00 0.00 34.53 1.98
2828 4077 6.542370 CGTCAAAACCTATTAACATGGGATCT 59.458 38.462 0.00 0.00 34.53 2.75
2829 4078 6.540914 TCGTCAAAACCTATTAACATGGGATC 59.459 38.462 0.00 0.00 34.53 3.36
2830 4079 6.419791 TCGTCAAAACCTATTAACATGGGAT 58.580 36.000 0.00 0.00 34.53 3.85
2831 4080 5.806818 TCGTCAAAACCTATTAACATGGGA 58.193 37.500 0.00 0.00 34.53 4.37
2832 4081 6.150474 AGTTCGTCAAAACCTATTAACATGGG 59.850 38.462 0.00 0.00 37.07 4.00
2833 4082 7.141100 AGTTCGTCAAAACCTATTAACATGG 57.859 36.000 0.00 0.00 0.00 3.66
2834 4083 9.458374 AAAAGTTCGTCAAAACCTATTAACATG 57.542 29.630 0.00 0.00 0.00 3.21
2859 4108 4.011023 TGGACGGTTCTTCTTGTGAAAAA 58.989 39.130 0.00 0.00 0.00 1.94
2860 4109 3.611970 TGGACGGTTCTTCTTGTGAAAA 58.388 40.909 0.00 0.00 0.00 2.29
2861 4110 3.269538 TGGACGGTTCTTCTTGTGAAA 57.730 42.857 0.00 0.00 0.00 2.69
2862 4111 2.992124 TGGACGGTTCTTCTTGTGAA 57.008 45.000 0.00 0.00 0.00 3.18
2863 4112 2.992124 TTGGACGGTTCTTCTTGTGA 57.008 45.000 0.00 0.00 0.00 3.58
2864 4113 4.364415 TTTTTGGACGGTTCTTCTTGTG 57.636 40.909 0.00 0.00 0.00 3.33
2883 4132 1.802365 CGTTCTCCCGATTCGGTTTTT 59.198 47.619 22.83 0.00 46.80 1.94
2884 4133 1.435577 CGTTCTCCCGATTCGGTTTT 58.564 50.000 22.83 0.00 46.80 2.43
2885 4134 0.390735 CCGTTCTCCCGATTCGGTTT 60.391 55.000 22.83 0.00 46.80 3.27
2886 4135 1.217244 CCGTTCTCCCGATTCGGTT 59.783 57.895 22.83 0.00 46.80 4.44
2887 4136 2.718073 CCCGTTCTCCCGATTCGGT 61.718 63.158 22.83 0.00 46.80 4.69
2889 4138 0.390735 AAACCCGTTCTCCCGATTCG 60.391 55.000 0.00 0.00 0.00 3.34
2890 4139 1.817357 AAAACCCGTTCTCCCGATTC 58.183 50.000 0.00 0.00 0.00 2.52
2891 4140 2.281539 AAAAACCCGTTCTCCCGATT 57.718 45.000 0.00 0.00 0.00 3.34
2907 4156 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
2908 4157 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
2909 4158 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
2910 4159 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
2911 4160 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.000 27.71 14.21 41.66 4.20
2912 4161 1.298859 CGTGCCTCTTTCGGAAAGGG 61.299 60.000 25.66 23.41 38.75 3.95
2913 4162 1.912371 GCGTGCCTCTTTCGGAAAGG 61.912 60.000 25.66 15.57 39.01 3.11
2914 4163 1.497722 GCGTGCCTCTTTCGGAAAG 59.502 57.895 21.64 21.64 39.88 2.62
2915 4164 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
2916 4165 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
2917 4166 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
2920 4169 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
2935 4184 1.461127 GTGTGATTTCGTGAGAGGCAC 59.539 52.381 0.00 0.00 43.69 5.01
2936 4185 1.344438 AGTGTGATTTCGTGAGAGGCA 59.656 47.619 0.00 0.00 43.69 4.75
2937 4186 1.996191 GAGTGTGATTTCGTGAGAGGC 59.004 52.381 0.00 0.00 43.69 4.70
2938 4187 2.254459 CGAGTGTGATTTCGTGAGAGG 58.746 52.381 0.00 0.00 43.69 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.