Multiple sequence alignment - TraesCS1D01G283600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G283600 chr1D 100.000 9477 0 0 1 9477 381964887 381974363 0.000000e+00 17501.0
1 TraesCS1D01G283600 chr1D 83.333 612 60 18 8893 9472 114366058 114365457 2.340000e-145 527.0
2 TraesCS1D01G283600 chr1D 81.835 534 95 1 2 535 28175137 28174606 1.880000e-121 448.0
3 TraesCS1D01G283600 chr1D 81.724 290 52 1 247 536 390438202 390437914 3.420000e-59 241.0
4 TraesCS1D01G283600 chr1B 92.676 5407 266 71 4145 9476 511968343 511973694 0.000000e+00 7672.0
5 TraesCS1D01G283600 chr1B 93.849 943 42 9 635 1575 511967000 511967928 0.000000e+00 1406.0
6 TraesCS1D01G283600 chr1B 91.073 1053 61 8 2809 3858 487311409 487312431 0.000000e+00 1393.0
7 TraesCS1D01G283600 chr1B 90.543 497 28 3 145 640 511964098 511964576 2.890000e-179 640.0
8 TraesCS1D01G283600 chr1B 83.276 586 50 21 8922 9472 175429798 175429226 6.610000e-136 496.0
9 TraesCS1D01G283600 chr1B 79.078 282 47 11 263 539 627159900 627159626 5.850000e-42 183.0
10 TraesCS1D01G283600 chr1B 95.294 85 4 0 3991 4075 511968245 511968329 1.660000e-27 135.0
11 TraesCS1D01G283600 chr1A 95.464 3549 117 24 5260 8786 482244797 482248323 0.000000e+00 5622.0
12 TraesCS1D01G283600 chr1A 90.380 1185 78 14 1578 2744 472581888 472580722 0.000000e+00 1524.0
13 TraesCS1D01G283600 chr1A 90.693 1053 74 7 2809 3858 517501137 517502168 0.000000e+00 1380.0
14 TraesCS1D01G283600 chr1A 85.111 947 81 38 536 1461 482241960 482242867 0.000000e+00 913.0
15 TraesCS1D01G283600 chr1A 86.567 804 66 14 8684 9474 482248251 482249025 0.000000e+00 848.0
16 TraesCS1D01G283600 chr1A 92.428 383 27 2 3020 3401 21617029 21617410 6.470000e-151 545.0
17 TraesCS1D01G283600 chr1A 80.541 740 86 25 2989 3679 15506396 15505666 5.070000e-142 516.0
18 TraesCS1D01G283600 chr1A 82.680 612 64 19 8893 9472 124897914 124897313 1.100000e-138 505.0
19 TraesCS1D01G283600 chr1A 82.372 607 59 26 4693 5274 482244187 482244770 1.430000e-132 484.0
20 TraesCS1D01G283600 chr1A 80.037 541 93 10 6 535 314625312 314624776 4.150000e-103 387.0
21 TraesCS1D01G283600 chr1A 90.458 262 22 3 3600 3858 21617410 21617671 9.110000e-90 342.0
22 TraesCS1D01G283600 chr1A 94.241 191 11 0 4406 4596 482243951 482244141 9.310000e-75 292.0
23 TraesCS1D01G283600 chr1A 89.815 108 5 2 2839 2940 21616923 21617030 5.970000e-27 134.0
24 TraesCS1D01G283600 chr1A 88.764 89 6 3 3991 4075 482243594 482243682 1.300000e-18 106.0
25 TraesCS1D01G283600 chr1A 79.375 160 20 8 3711 3858 15505661 15505503 6.060000e-17 100.0
26 TraesCS1D01G283600 chr3D 91.511 1178 71 14 1575 2741 101672438 101671279 0.000000e+00 1594.0
27 TraesCS1D01G283600 chr3D 100.000 29 0 0 240 268 85412492 85412464 5.000000e-03 54.7
28 TraesCS1D01G283600 chr7D 93.495 1030 57 6 2834 3860 565349684 565348662 0.000000e+00 1522.0
29 TraesCS1D01G283600 chr7D 83.034 725 75 16 1958 2671 477205475 477204788 1.750000e-171 614.0
30 TraesCS1D01G283600 chr7D 82.362 652 86 11 2992 3624 22081776 22081135 3.010000e-149 540.0
31 TraesCS1D01G283600 chr7D 86.905 420 26 13 1578 1995 163562425 163562033 2.430000e-120 444.0
32 TraesCS1D01G283600 chr7D 81.264 443 60 13 94 535 18849809 18850229 4.240000e-88 337.0
33 TraesCS1D01G283600 chr7D 89.634 164 16 1 2992 3154 631590268 631590105 3.470000e-49 207.0
34 TraesCS1D01G283600 chr6D 93.862 896 48 3 1579 2473 20598125 20597236 0.000000e+00 1343.0
35 TraesCS1D01G283600 chr6D 92.130 216 14 2 2526 2741 20596979 20596767 1.550000e-77 302.0
36 TraesCS1D01G283600 chr6D 91.111 45 4 0 3874 3918 84069214 84069170 2.860000e-05 62.1
37 TraesCS1D01G283600 chr6D 100.000 28 0 0 621 648 6392535 6392508 1.700000e-02 52.8
38 TraesCS1D01G283600 chr3A 89.289 1055 86 15 2809 3858 354929253 354930285 0.000000e+00 1297.0
39 TraesCS1D01G283600 chr3A 86.688 631 56 15 2041 2644 398270098 398270727 0.000000e+00 675.0
40 TraesCS1D01G283600 chr3A 78.019 646 97 30 2989 3601 7166101 7165468 1.940000e-96 364.0
41 TraesCS1D01G283600 chr3A 77.778 360 71 7 180 535 730806131 730806485 7.460000e-51 213.0
42 TraesCS1D01G283600 chr3A 94.118 34 2 0 556 589 496991844 496991811 1.700000e-02 52.8
43 TraesCS1D01G283600 chr6B 92.316 898 42 10 1823 2694 22895174 22894278 0.000000e+00 1251.0
44 TraesCS1D01G283600 chr6B 91.085 258 18 2 1576 1833 22895384 22895132 2.530000e-90 344.0
45 TraesCS1D01G283600 chr6B 92.308 39 3 0 230 268 12761356 12761394 1.000000e-03 56.5
46 TraesCS1D01G283600 chr7B 91.805 903 65 5 1577 2477 333406027 333405132 0.000000e+00 1249.0
47 TraesCS1D01G283600 chr7B 85.655 718 66 19 1958 2644 197697639 197698350 0.000000e+00 721.0
48 TraesCS1D01G283600 chr7B 94.286 35 2 0 3881 3915 727440954 727440920 5.000000e-03 54.7
49 TraesCS1D01G283600 chr7B 100.000 29 0 0 3881 3909 727860445 727860473 5.000000e-03 54.7
50 TraesCS1D01G283600 chr5B 92.614 853 55 4 1578 2430 669434217 669433373 0.000000e+00 1219.0
51 TraesCS1D01G283600 chr5B 90.970 742 48 10 1752 2476 662845812 662846551 0.000000e+00 981.0
52 TraesCS1D01G283600 chr5B 91.463 82 7 0 2660 2741 662847199 662847280 7.780000e-21 113.0
53 TraesCS1D01G283600 chr4A 90.632 918 73 7 1835 2744 616918063 616917151 0.000000e+00 1206.0
54 TraesCS1D01G283600 chr4A 88.853 933 58 18 1573 2488 707932456 707933359 0.000000e+00 1105.0
55 TraesCS1D01G283600 chr4A 79.949 394 69 8 37 422 684193478 684193869 2.010000e-71 281.0
56 TraesCS1D01G283600 chr2A 89.088 614 51 8 2041 2642 166061709 166062318 0.000000e+00 749.0
57 TraesCS1D01G283600 chr2A 88.889 540 50 8 3321 3858 582076193 582075662 0.000000e+00 656.0
58 TraesCS1D01G283600 chr2A 88.938 226 21 2 1603 1828 716183567 716183788 9.370000e-70 276.0
59 TraesCS1D01G283600 chr2A 92.025 163 10 2 2484 2644 436384734 436384573 9.580000e-55 226.0
60 TraesCS1D01G283600 chr2A 95.556 45 2 0 611 655 319040396 319040352 1.320000e-08 73.1
61 TraesCS1D01G283600 chr5A 93.582 483 28 3 2804 3285 3878952 3878472 0.000000e+00 717.0
62 TraesCS1D01G283600 chr5A 92.308 39 3 0 230 268 24431116 24431154 1.000000e-03 56.5
63 TraesCS1D01G283600 chr4B 86.465 628 57 16 2042 2644 83306220 83305596 0.000000e+00 682.0
64 TraesCS1D01G283600 chr4B 78.614 505 84 10 51 535 440920838 440921338 7.150000e-81 313.0
65 TraesCS1D01G283600 chr3B 79.550 489 80 11 49 526 810512746 810513225 1.970000e-86 331.0
66 TraesCS1D01G283600 chr3B 88.235 170 17 3 2572 2741 791584968 791584802 5.800000e-47 200.0
67 TraesCS1D01G283600 chr5D 78.036 560 76 21 8952 9470 40929126 40928573 9.240000e-80 309.0
68 TraesCS1D01G283600 chr5D 79.870 154 20 6 3708 3850 345882449 345882602 1.680000e-17 102.0
69 TraesCS1D01G283600 chr2B 77.645 501 89 20 44 535 82866148 82865662 5.600000e-72 283.0
70 TraesCS1D01G283600 chr2D 95.556 45 2 0 611 655 273004976 273005020 1.320000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G283600 chr1D 381964887 381974363 9476 False 17501.000000 17501 100.000000 1 9477 1 chr1D.!!$F1 9476
1 TraesCS1D01G283600 chr1D 114365457 114366058 601 True 527.000000 527 83.333000 8893 9472 1 chr1D.!!$R2 579
2 TraesCS1D01G283600 chr1D 28174606 28175137 531 True 448.000000 448 81.835000 2 535 1 chr1D.!!$R1 533
3 TraesCS1D01G283600 chr1B 511964098 511973694 9596 False 2463.250000 7672 93.090500 145 9476 4 chr1B.!!$F2 9331
4 TraesCS1D01G283600 chr1B 487311409 487312431 1022 False 1393.000000 1393 91.073000 2809 3858 1 chr1B.!!$F1 1049
5 TraesCS1D01G283600 chr1B 175429226 175429798 572 True 496.000000 496 83.276000 8922 9472 1 chr1B.!!$R1 550
6 TraesCS1D01G283600 chr1A 472580722 472581888 1166 True 1524.000000 1524 90.380000 1578 2744 1 chr1A.!!$R3 1166
7 TraesCS1D01G283600 chr1A 517501137 517502168 1031 False 1380.000000 1380 90.693000 2809 3858 1 chr1A.!!$F1 1049
8 TraesCS1D01G283600 chr1A 482241960 482249025 7065 False 1377.500000 5622 88.753167 536 9474 6 chr1A.!!$F3 8938
9 TraesCS1D01G283600 chr1A 124897313 124897914 601 True 505.000000 505 82.680000 8893 9472 1 chr1A.!!$R1 579
10 TraesCS1D01G283600 chr1A 314624776 314625312 536 True 387.000000 387 80.037000 6 535 1 chr1A.!!$R2 529
11 TraesCS1D01G283600 chr1A 21616923 21617671 748 False 340.333333 545 90.900333 2839 3858 3 chr1A.!!$F2 1019
12 TraesCS1D01G283600 chr1A 15505503 15506396 893 True 308.000000 516 79.958000 2989 3858 2 chr1A.!!$R4 869
13 TraesCS1D01G283600 chr3D 101671279 101672438 1159 True 1594.000000 1594 91.511000 1575 2741 1 chr3D.!!$R2 1166
14 TraesCS1D01G283600 chr7D 565348662 565349684 1022 True 1522.000000 1522 93.495000 2834 3860 1 chr7D.!!$R4 1026
15 TraesCS1D01G283600 chr7D 477204788 477205475 687 True 614.000000 614 83.034000 1958 2671 1 chr7D.!!$R3 713
16 TraesCS1D01G283600 chr7D 22081135 22081776 641 True 540.000000 540 82.362000 2992 3624 1 chr7D.!!$R1 632
17 TraesCS1D01G283600 chr6D 20596767 20598125 1358 True 822.500000 1343 92.996000 1579 2741 2 chr6D.!!$R3 1162
18 TraesCS1D01G283600 chr3A 354929253 354930285 1032 False 1297.000000 1297 89.289000 2809 3858 1 chr3A.!!$F1 1049
19 TraesCS1D01G283600 chr3A 398270098 398270727 629 False 675.000000 675 86.688000 2041 2644 1 chr3A.!!$F2 603
20 TraesCS1D01G283600 chr3A 7165468 7166101 633 True 364.000000 364 78.019000 2989 3601 1 chr3A.!!$R1 612
21 TraesCS1D01G283600 chr6B 22894278 22895384 1106 True 797.500000 1251 91.700500 1576 2694 2 chr6B.!!$R1 1118
22 TraesCS1D01G283600 chr7B 333405132 333406027 895 True 1249.000000 1249 91.805000 1577 2477 1 chr7B.!!$R1 900
23 TraesCS1D01G283600 chr7B 197697639 197698350 711 False 721.000000 721 85.655000 1958 2644 1 chr7B.!!$F1 686
24 TraesCS1D01G283600 chr5B 669433373 669434217 844 True 1219.000000 1219 92.614000 1578 2430 1 chr5B.!!$R1 852
25 TraesCS1D01G283600 chr5B 662845812 662847280 1468 False 547.000000 981 91.216500 1752 2741 2 chr5B.!!$F1 989
26 TraesCS1D01G283600 chr4A 616917151 616918063 912 True 1206.000000 1206 90.632000 1835 2744 1 chr4A.!!$R1 909
27 TraesCS1D01G283600 chr4A 707932456 707933359 903 False 1105.000000 1105 88.853000 1573 2488 1 chr4A.!!$F2 915
28 TraesCS1D01G283600 chr2A 166061709 166062318 609 False 749.000000 749 89.088000 2041 2642 1 chr2A.!!$F1 601
29 TraesCS1D01G283600 chr2A 582075662 582076193 531 True 656.000000 656 88.889000 3321 3858 1 chr2A.!!$R3 537
30 TraesCS1D01G283600 chr4B 83305596 83306220 624 True 682.000000 682 86.465000 2042 2644 1 chr4B.!!$R1 602
31 TraesCS1D01G283600 chr4B 440920838 440921338 500 False 313.000000 313 78.614000 51 535 1 chr4B.!!$F1 484
32 TraesCS1D01G283600 chr5D 40928573 40929126 553 True 309.000000 309 78.036000 8952 9470 1 chr5D.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 407 0.107410 TGTCTTTGCCGAGTGTGGTT 60.107 50.0 0.00 0.00 0.00 3.67 F
1226 3694 0.179100 CTCTTCCATGACGCCGATGT 60.179 55.0 0.00 0.00 0.00 3.06 F
2148 4936 0.323302 TGCAACTCCGCCTTACATGA 59.677 50.0 0.00 0.00 0.00 3.07 F
2256 5048 0.940126 CGCCTGATGGATGTAGCAAC 59.060 55.0 0.00 0.00 34.57 4.17 F
3861 7479 0.689745 CCCCTGGACGACCCTGATAA 60.690 60.0 0.34 0.00 36.07 1.75 F
4269 7990 0.034089 CCTTTGATCCTCCCACCCAC 60.034 60.0 0.00 0.00 0.00 4.61 F
4371 8093 0.037790 GCCGAGCTCTTCAGTGTCTT 60.038 55.0 12.85 0.00 0.00 3.01 F
4870 8694 0.107848 GTCCGACCCATACCAAGTGG 60.108 60.0 0.00 0.00 42.17 4.00 F
6056 9933 0.384309 TGCCTCGCTTGTATACTCCG 59.616 55.0 4.17 4.48 0.00 4.63 F
7420 11300 0.677288 AGTGTAACCAGCTACGCACA 59.323 50.0 1.08 0.00 37.80 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 4475 0.324943 CCAGCCCGAGGAAGAAGAAA 59.675 55.000 0.00 0.00 0.00 2.52 R
2818 6122 0.036765 CCGGGTCCACGAATTTCTGA 60.037 55.000 0.00 0.00 35.47 3.27 R
3861 7479 0.035317 TCTGAAATGAGCGTGCACCT 59.965 50.000 12.15 9.49 0.00 4.00 R
4211 7932 0.321919 TGGTCATGCTGGAGAAGTGC 60.322 55.000 0.00 0.00 0.00 4.40 R
4881 8705 0.040246 GAGCCGTATGGAGCGTAGAC 60.040 60.000 4.73 0.00 37.49 2.59 R
5758 9635 1.879380 TGCTACAAGCCACATGACAAC 59.121 47.619 0.00 0.00 41.51 3.32 R
6154 10031 2.318908 GCCATTGCAATCCTTGGGATA 58.681 47.619 16.57 0.00 42.27 2.59 R
6865 10744 3.264450 AGCTTCAGTACCATGGTAAGCTT 59.736 43.478 32.96 22.38 40.99 3.74 R
7931 11811 1.078708 GGAATGAAGGGTTCGCGGA 60.079 57.895 6.13 0.00 0.00 5.54 R
9096 13087 1.614824 AGGAGGAGCAGGTGGGAAG 60.615 63.158 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.165270 GCTCACTAATGGTGCGGTTT 58.835 50.000 0.00 0.00 44.98 3.27
108 109 4.469586 TGGACTGCCACTATGAACATTCTA 59.530 41.667 0.00 0.00 39.92 2.10
118 119 6.422100 CACTATGAACATTCTATGTCCGGAAG 59.578 42.308 5.23 0.00 44.07 3.46
224 241 3.076182 AGGTCCTTCTCCTTGTCAGTAGA 59.924 47.826 0.00 0.00 30.18 2.59
284 311 3.057526 GCAAAGAAGTACAACCATGACCC 60.058 47.826 0.00 0.00 0.00 4.46
378 406 0.814010 GTGTCTTTGCCGAGTGTGGT 60.814 55.000 0.00 0.00 0.00 4.16
379 407 0.107410 TGTCTTTGCCGAGTGTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
380 408 0.307760 GTCTTTGCCGAGTGTGGTTG 59.692 55.000 0.00 0.00 0.00 3.77
419 447 4.323417 TCTCGGCAATATCTTGTGTTTGT 58.677 39.130 0.00 0.00 34.69 2.83
499 527 1.935300 GCTTTGACTCTCGGCGAAGAA 60.935 52.381 20.44 6.19 0.00 2.52
549 577 6.833041 TCCAGTAGTGTAGGTTTGATTTTGA 58.167 36.000 0.00 0.00 0.00 2.69
743 3208 2.295885 AGCAGCTCATGTTGATTAGCC 58.704 47.619 0.00 0.00 35.54 3.93
785 3252 1.585006 GCTCATGCATATGGCTGCC 59.415 57.895 12.87 12.87 45.15 4.85
796 3263 0.607489 ATGGCTGCCCGCATAATCTC 60.607 55.000 17.53 0.00 41.67 2.75
799 3266 1.510480 GCTGCCCGCATAATCTCACC 61.510 60.000 0.00 0.00 38.92 4.02
800 3267 1.224069 CTGCCCGCATAATCTCACCG 61.224 60.000 0.00 0.00 0.00 4.94
828 3295 2.161855 ACCGAAAGCAAGCATGAATGA 58.838 42.857 0.00 0.00 0.00 2.57
869 3336 1.486310 AGCTACCCAATCAAGCGATCA 59.514 47.619 0.00 0.00 41.19 2.92
870 3337 2.092968 AGCTACCCAATCAAGCGATCAA 60.093 45.455 0.00 0.00 41.19 2.57
871 3338 2.032178 GCTACCCAATCAAGCGATCAAC 59.968 50.000 0.00 0.00 0.00 3.18
1067 3535 1.363744 CATGACGAGTTTCTCCAGGC 58.636 55.000 0.00 0.00 0.00 4.85
1224 3692 1.227380 GCTCTTCCATGACGCCGAT 60.227 57.895 0.00 0.00 0.00 4.18
1226 3694 0.179100 CTCTTCCATGACGCCGATGT 60.179 55.000 0.00 0.00 0.00 3.06
1227 3695 0.460109 TCTTCCATGACGCCGATGTG 60.460 55.000 0.00 0.00 0.00 3.21
1305 3773 2.202623 GACGGCGACAGCGAAGAT 60.203 61.111 16.62 0.00 46.35 2.40
1408 3876 2.675519 CTCAAGTGGAGCGAGATGC 58.324 57.895 0.00 0.00 46.98 3.91
1485 3956 2.627699 TCCTTTCACTTTGGCCATCAAC 59.372 45.455 6.09 0.00 34.67 3.18
1486 3957 2.289010 CCTTTCACTTTGGCCATCAACC 60.289 50.000 6.09 0.00 34.67 3.77
1487 3958 2.079170 TTCACTTTGGCCATCAACCA 57.921 45.000 6.09 0.00 34.67 3.67
1488 3959 2.307496 TCACTTTGGCCATCAACCAT 57.693 45.000 6.09 0.00 36.96 3.55
1489 3960 2.170166 TCACTTTGGCCATCAACCATC 58.830 47.619 6.09 0.00 36.96 3.51
1490 3961 1.894466 CACTTTGGCCATCAACCATCA 59.106 47.619 6.09 0.00 36.96 3.07
1491 3962 2.094390 CACTTTGGCCATCAACCATCAG 60.094 50.000 6.09 0.00 36.96 2.90
1492 3963 2.225091 ACTTTGGCCATCAACCATCAGA 60.225 45.455 6.09 0.00 36.96 3.27
1493 3964 1.838112 TTGGCCATCAACCATCAGAC 58.162 50.000 6.09 0.00 36.96 3.51
1496 3967 2.779430 TGGCCATCAACCATCAGACTAT 59.221 45.455 0.00 0.00 30.29 2.12
1499 3970 4.454678 GCCATCAACCATCAGACTATCAA 58.545 43.478 0.00 0.00 0.00 2.57
1501 3972 5.008415 GCCATCAACCATCAGACTATCAAAG 59.992 44.000 0.00 0.00 0.00 2.77
1503 3974 7.275183 CCATCAACCATCAGACTATCAAAGTA 58.725 38.462 0.00 0.00 39.07 2.24
1568 4039 5.209818 AGAGTCTGTTATGTTTTGGTCGA 57.790 39.130 0.00 0.00 0.00 4.20
1569 4040 5.794894 AGAGTCTGTTATGTTTTGGTCGAT 58.205 37.500 0.00 0.00 0.00 3.59
1701 4475 3.671716 AGAAAAACGATTCGCCTAGGTT 58.328 40.909 11.31 0.00 34.46 3.50
1909 4684 4.032960 ACTACCTCAATCCATGCAACAA 57.967 40.909 0.00 0.00 0.00 2.83
1913 4688 2.559668 CCTCAATCCATGCAACAACTGT 59.440 45.455 0.00 0.00 0.00 3.55
2148 4936 0.323302 TGCAACTCCGCCTTACATGA 59.677 50.000 0.00 0.00 0.00 3.07
2155 4943 3.704566 ACTCCGCCTTACATGAATGTAGA 59.295 43.478 0.00 0.00 43.44 2.59
2156 4944 4.161565 ACTCCGCCTTACATGAATGTAGAA 59.838 41.667 0.00 0.00 43.44 2.10
2187 4978 5.914033 TCAGCGGTAGTAGCAAAAATCTAT 58.086 37.500 0.00 0.00 37.01 1.98
2256 5048 0.940126 CGCCTGATGGATGTAGCAAC 59.060 55.000 0.00 0.00 34.57 4.17
2404 5207 3.868661 CGGTTGCAACACTAGTATATGCA 59.131 43.478 29.55 19.61 44.54 3.96
2523 5381 2.743928 CCGTGTGAAGGCTGGAGC 60.744 66.667 0.00 0.00 41.14 4.70
2639 5686 4.179599 GGGAGGGAGGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
2640 5687 4.179599 GGAGGGAGGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
2711 6013 1.545841 GGGAGACCGGCAAGATTTTT 58.454 50.000 0.00 0.00 43.64 1.94
2715 6017 2.747446 GAGACCGGCAAGATTTTTAGCA 59.253 45.455 0.00 0.00 0.00 3.49
2769 6071 1.210155 GCCAAGCAACCAACTAGCG 59.790 57.895 0.00 0.00 0.00 4.26
2803 6107 6.546034 CCACTCCTTCCGTTCCAATAAATAAT 59.454 38.462 0.00 0.00 0.00 1.28
2804 6108 7.417612 CACTCCTTCCGTTCCAATAAATAATG 58.582 38.462 0.00 0.00 0.00 1.90
2805 6109 7.067008 CACTCCTTCCGTTCCAATAAATAATGT 59.933 37.037 0.00 0.00 0.00 2.71
2806 6110 7.067008 ACTCCTTCCGTTCCAATAAATAATGTG 59.933 37.037 0.00 0.00 0.00 3.21
2807 6111 6.887545 TCCTTCCGTTCCAATAAATAATGTGT 59.112 34.615 0.00 0.00 0.00 3.72
2818 6122 3.926058 AATAATGTGTAGGGCCGTCTT 57.074 42.857 0.00 0.00 0.00 3.01
2829 6133 1.439679 GGCCGTCTTCAGAAATTCGT 58.560 50.000 0.00 0.00 0.00 3.85
2832 6136 2.683968 CCGTCTTCAGAAATTCGTGGA 58.316 47.619 0.00 0.00 0.00 4.02
2888 6198 5.118990 TCTAGAATACAGGTTGCTTCATGC 58.881 41.667 0.00 0.00 43.25 4.06
2951 6263 6.144854 CGAGCAACAATCTTGAAAATCTTGA 58.855 36.000 0.00 0.00 0.00 3.02
2983 6295 6.325804 ACAACTTGGTCAACTAACCTACTACT 59.674 38.462 0.00 0.00 40.20 2.57
3080 6393 8.639761 TCAAATTAAATAGGGTTTCGGTTTGAA 58.360 29.630 0.00 0.00 31.35 2.69
3081 6394 9.430623 CAAATTAAATAGGGTTTCGGTTTGAAT 57.569 29.630 0.00 0.00 36.22 2.57
3142 6457 2.038837 GCCACCGGCTGTTTCTACC 61.039 63.158 0.00 0.00 46.69 3.18
3248 6579 1.467342 CTGGATGACGTACACTGTCGA 59.533 52.381 0.00 0.00 39.22 4.20
3263 6594 7.079182 ACACTGTCGAAAACTTGACATTAAA 57.921 32.000 0.00 0.00 43.59 1.52
3286 6617 1.244019 CCCCTTGAAGAAACCTGCCG 61.244 60.000 0.00 0.00 0.00 5.69
3311 6642 1.684450 GGGTCACCAAAACGTCCATTT 59.316 47.619 0.00 0.00 36.50 2.32
3385 6734 7.411486 TCCAATTGTTCCTAAAACTGAAACA 57.589 32.000 4.43 0.00 0.00 2.83
3386 6735 8.017418 TCCAATTGTTCCTAAAACTGAAACAT 57.983 30.769 4.43 0.00 0.00 2.71
3456 7037 8.858186 CACAAGCTATAGTAAATCAGATCATCG 58.142 37.037 0.84 0.00 0.00 3.84
3514 7096 5.579119 CGACTTGTTGTTGCTGTACCATATA 59.421 40.000 0.00 0.00 0.00 0.86
3518 7100 8.296713 ACTTGTTGTTGCTGTACCATATAAAAG 58.703 33.333 0.00 0.00 0.00 2.27
3582 7164 5.940470 AGGAAACAAAGCGATCAAACTAGAT 59.060 36.000 0.00 0.00 0.00 1.98
3650 7252 4.340617 GTCTCGGGAAGATGGATAGATCT 58.659 47.826 0.00 0.00 36.11 2.75
3652 7254 6.126409 GTCTCGGGAAGATGGATAGATCTAT 58.874 44.000 15.26 15.26 36.11 1.98
3653 7255 6.605594 GTCTCGGGAAGATGGATAGATCTATT 59.394 42.308 16.37 0.82 36.11 1.73
3665 7267 1.795768 GATCTATTGATCGGCGGCAA 58.204 50.000 10.53 15.97 39.56 4.52
3680 7282 1.237285 GGCAAGCTGTGTCAATCCGT 61.237 55.000 0.00 0.00 0.00 4.69
3775 7392 7.518188 TGTAAAAATGGCCCAAAATTAAGGAA 58.482 30.769 0.00 0.00 0.00 3.36
3810 7427 2.777146 GGGGCCCCTGGAATTTGA 59.223 61.111 35.49 0.00 0.00 2.69
3860 7478 1.075525 CCCCTGGACGACCCTGATA 60.076 63.158 0.34 0.00 36.07 2.15
3861 7479 0.689745 CCCCTGGACGACCCTGATAA 60.690 60.000 0.34 0.00 36.07 1.75
3862 7480 0.753262 CCCTGGACGACCCTGATAAG 59.247 60.000 0.34 0.00 36.07 1.73
3863 7481 0.753262 CCTGGACGACCCTGATAAGG 59.247 60.000 0.34 0.00 36.07 2.69
3879 7497 0.877071 AAGGTGCACGCTCATTTCAG 59.123 50.000 11.45 0.00 0.00 3.02
3889 7507 5.858581 GCACGCTCATTTCAGAATTAAACTT 59.141 36.000 0.00 0.00 0.00 2.66
3925 7543 9.705290 ATTAGACCAATTAAATTTGTGTCAACC 57.295 29.630 0.00 0.00 33.19 3.77
3927 7545 6.983890 AGACCAATTAAATTTGTGTCAACCAC 59.016 34.615 0.00 0.00 44.78 4.16
3966 7657 1.888512 CTGACTCATGGGTTTGGGTTG 59.111 52.381 0.00 0.00 27.94 3.77
3978 7669 5.536916 TGGGTTTGGGTTGAGTTTTGTATAG 59.463 40.000 0.00 0.00 0.00 1.31
3979 7670 5.466819 GGTTTGGGTTGAGTTTTGTATAGC 58.533 41.667 0.00 0.00 0.00 2.97
3980 7671 5.243060 GGTTTGGGTTGAGTTTTGTATAGCT 59.757 40.000 0.00 0.00 0.00 3.32
3982 7673 5.499004 TGGGTTGAGTTTTGTATAGCTCT 57.501 39.130 0.00 0.00 0.00 4.09
3983 7674 6.614694 TGGGTTGAGTTTTGTATAGCTCTA 57.385 37.500 0.00 0.00 0.00 2.43
3984 7675 6.640518 TGGGTTGAGTTTTGTATAGCTCTAG 58.359 40.000 0.00 0.00 0.00 2.43
3985 7676 6.212791 TGGGTTGAGTTTTGTATAGCTCTAGT 59.787 38.462 0.00 0.00 0.00 2.57
3987 7678 6.535508 GGTTGAGTTTTGTATAGCTCTAGTGG 59.464 42.308 0.00 0.00 0.00 4.00
3988 7679 7.321153 GTTGAGTTTTGTATAGCTCTAGTGGA 58.679 38.462 0.00 0.00 0.00 4.02
3989 7680 6.864342 TGAGTTTTGTATAGCTCTAGTGGAC 58.136 40.000 0.00 0.00 0.00 4.02
4080 7800 8.737168 ATAAAGATACAATAGAAAGTGCAGCA 57.263 30.769 0.00 0.00 0.00 4.41
4081 7801 6.674694 AAGATACAATAGAAAGTGCAGCAG 57.325 37.500 0.00 0.00 0.00 4.24
4082 7802 5.738909 AGATACAATAGAAAGTGCAGCAGT 58.261 37.500 0.00 0.00 0.00 4.40
4083 7803 6.176183 AGATACAATAGAAAGTGCAGCAGTT 58.824 36.000 9.89 9.89 0.00 3.16
4084 7804 4.494350 ACAATAGAAAGTGCAGCAGTTG 57.506 40.909 16.46 6.04 0.00 3.16
4085 7805 3.885297 ACAATAGAAAGTGCAGCAGTTGT 59.115 39.130 16.46 6.70 0.00 3.32
4086 7806 4.339247 ACAATAGAAAGTGCAGCAGTTGTT 59.661 37.500 16.46 9.97 0.00 2.83
4087 7807 5.163519 ACAATAGAAAGTGCAGCAGTTGTTT 60.164 36.000 16.46 7.63 0.00 2.83
4088 7808 3.427161 AGAAAGTGCAGCAGTTGTTTC 57.573 42.857 16.46 10.24 0.00 2.78
4089 7809 2.099756 AGAAAGTGCAGCAGTTGTTTCC 59.900 45.455 16.46 4.28 0.00 3.13
4090 7810 1.767759 AAGTGCAGCAGTTGTTTCCT 58.232 45.000 15.02 0.00 0.00 3.36
4091 7811 1.767759 AGTGCAGCAGTTGTTTCCTT 58.232 45.000 0.00 0.00 0.00 3.36
4092 7812 2.102578 AGTGCAGCAGTTGTTTCCTTT 58.897 42.857 0.00 0.00 0.00 3.11
4093 7813 2.099756 AGTGCAGCAGTTGTTTCCTTTC 59.900 45.455 0.00 0.00 0.00 2.62
4094 7814 2.099756 GTGCAGCAGTTGTTTCCTTTCT 59.900 45.455 0.00 0.00 0.00 2.52
4095 7815 2.358898 TGCAGCAGTTGTTTCCTTTCTC 59.641 45.455 0.00 0.00 0.00 2.87
4096 7816 2.620585 GCAGCAGTTGTTTCCTTTCTCT 59.379 45.455 0.00 0.00 0.00 3.10
4097 7817 3.304324 GCAGCAGTTGTTTCCTTTCTCTC 60.304 47.826 0.00 0.00 0.00 3.20
4098 7818 4.133078 CAGCAGTTGTTTCCTTTCTCTCT 58.867 43.478 0.00 0.00 0.00 3.10
4099 7819 4.024218 CAGCAGTTGTTTCCTTTCTCTCTG 60.024 45.833 0.00 0.00 0.00 3.35
4100 7820 3.879892 GCAGTTGTTTCCTTTCTCTCTGT 59.120 43.478 0.00 0.00 0.00 3.41
4101 7821 4.024472 GCAGTTGTTTCCTTTCTCTCTGTC 60.024 45.833 0.00 0.00 0.00 3.51
4102 7822 5.118990 CAGTTGTTTCCTTTCTCTCTGTCA 58.881 41.667 0.00 0.00 0.00 3.58
4103 7823 5.586243 CAGTTGTTTCCTTTCTCTCTGTCAA 59.414 40.000 0.00 0.00 0.00 3.18
4104 7824 6.261826 CAGTTGTTTCCTTTCTCTCTGTCAAT 59.738 38.462 0.00 0.00 0.00 2.57
4105 7825 6.261826 AGTTGTTTCCTTTCTCTCTGTCAATG 59.738 38.462 0.00 0.00 0.00 2.82
4106 7826 4.516698 TGTTTCCTTTCTCTCTGTCAATGC 59.483 41.667 0.00 0.00 0.00 3.56
4107 7827 4.356405 TTCCTTTCTCTCTGTCAATGCA 57.644 40.909 0.00 0.00 0.00 3.96
4108 7828 4.356405 TCCTTTCTCTCTGTCAATGCAA 57.644 40.909 0.00 0.00 0.00 4.08
4109 7829 4.717877 TCCTTTCTCTCTGTCAATGCAAA 58.282 39.130 0.00 0.00 0.00 3.68
4110 7830 4.758674 TCCTTTCTCTCTGTCAATGCAAAG 59.241 41.667 0.00 0.00 0.00 2.77
4111 7831 4.758674 CCTTTCTCTCTGTCAATGCAAAGA 59.241 41.667 0.00 0.00 0.00 2.52
4112 7832 5.415077 CCTTTCTCTCTGTCAATGCAAAGAT 59.585 40.000 0.00 0.00 0.00 2.40
4113 7833 6.596888 CCTTTCTCTCTGTCAATGCAAAGATA 59.403 38.462 0.00 0.00 0.00 1.98
4114 7834 6.974932 TTCTCTCTGTCAATGCAAAGATAC 57.025 37.500 0.00 0.00 0.00 2.24
4115 7835 6.041423 TCTCTCTGTCAATGCAAAGATACA 57.959 37.500 0.00 0.00 0.00 2.29
4116 7836 5.871524 TCTCTCTGTCAATGCAAAGATACAC 59.128 40.000 0.00 0.00 0.00 2.90
4117 7837 5.798132 TCTCTGTCAATGCAAAGATACACT 58.202 37.500 0.00 0.00 0.00 3.55
4118 7838 5.871524 TCTCTGTCAATGCAAAGATACACTC 59.128 40.000 0.00 0.00 0.00 3.51
4119 7839 4.937620 TCTGTCAATGCAAAGATACACTCC 59.062 41.667 0.00 0.00 0.00 3.85
4120 7840 4.650734 TGTCAATGCAAAGATACACTCCA 58.349 39.130 0.00 0.00 0.00 3.86
4121 7841 5.069318 TGTCAATGCAAAGATACACTCCAA 58.931 37.500 0.00 0.00 0.00 3.53
4122 7842 5.534278 TGTCAATGCAAAGATACACTCCAAA 59.466 36.000 0.00 0.00 0.00 3.28
4123 7843 6.088824 GTCAATGCAAAGATACACTCCAAAG 58.911 40.000 0.00 0.00 0.00 2.77
4124 7844 4.708726 ATGCAAAGATACACTCCAAAGC 57.291 40.909 0.00 0.00 0.00 3.51
4125 7845 2.483877 TGCAAAGATACACTCCAAAGCG 59.516 45.455 0.00 0.00 0.00 4.68
4126 7846 2.484264 GCAAAGATACACTCCAAAGCGT 59.516 45.455 0.00 0.00 0.00 5.07
4127 7847 3.682858 GCAAAGATACACTCCAAAGCGTA 59.317 43.478 0.00 0.00 0.00 4.42
4128 7848 4.332819 GCAAAGATACACTCCAAAGCGTAT 59.667 41.667 0.00 0.00 34.26 3.06
4129 7849 5.163754 GCAAAGATACACTCCAAAGCGTATT 60.164 40.000 0.00 0.00 32.24 1.89
4130 7850 6.478588 CAAAGATACACTCCAAAGCGTATTC 58.521 40.000 0.00 0.00 32.24 1.75
4131 7851 4.360563 AGATACACTCCAAAGCGTATTCG 58.639 43.478 0.00 0.00 32.24 3.34
4178 7899 6.734104 AGTTGATGAAAGATGCACTAGAAC 57.266 37.500 0.00 0.00 0.00 3.01
4198 7919 1.448540 GAGCACCATGTCCACCTCG 60.449 63.158 0.00 0.00 0.00 4.63
4239 7960 0.034767 CAGCATGACCATGTCCACCT 60.035 55.000 11.17 0.00 39.69 4.00
4269 7990 0.034089 CCTTTGATCCTCCCACCCAC 60.034 60.000 0.00 0.00 0.00 4.61
4277 7998 3.943137 CTCCCACCCACCCAGCCTA 62.943 68.421 0.00 0.00 0.00 3.93
4299 8021 0.820871 GACGCTCTCCATCCTGAGTT 59.179 55.000 0.00 0.00 33.93 3.01
4311 8033 1.197430 CCTGAGTTCCTGACCTGCCT 61.197 60.000 0.00 0.00 0.00 4.75
4312 8034 0.248843 CTGAGTTCCTGACCTGCCTC 59.751 60.000 0.00 0.00 0.00 4.70
4313 8035 1.194781 TGAGTTCCTGACCTGCCTCC 61.195 60.000 0.00 0.00 0.00 4.30
4314 8036 1.904990 GAGTTCCTGACCTGCCTCCC 61.905 65.000 0.00 0.00 0.00 4.30
4342 8064 3.055719 CCGCGGCTTTCCACACAT 61.056 61.111 14.67 0.00 0.00 3.21
4364 8086 4.135153 GCGAGGCCGAGCTCTTCA 62.135 66.667 12.85 0.00 38.22 3.02
4365 8087 2.103934 CGAGGCCGAGCTCTTCAG 59.896 66.667 12.85 0.00 38.22 3.02
4366 8088 2.705821 CGAGGCCGAGCTCTTCAGT 61.706 63.158 12.85 0.00 38.22 3.41
4367 8089 1.153667 GAGGCCGAGCTCTTCAGTG 60.154 63.158 12.85 0.00 0.00 3.66
4368 8090 1.882989 GAGGCCGAGCTCTTCAGTGT 61.883 60.000 12.85 0.00 0.00 3.55
4369 8091 1.446966 GGCCGAGCTCTTCAGTGTC 60.447 63.158 12.85 0.00 0.00 3.67
4370 8092 1.589113 GCCGAGCTCTTCAGTGTCT 59.411 57.895 12.85 0.00 0.00 3.41
4371 8093 0.037790 GCCGAGCTCTTCAGTGTCTT 60.038 55.000 12.85 0.00 0.00 3.01
4372 8094 1.989430 CCGAGCTCTTCAGTGTCTTC 58.011 55.000 12.85 0.00 0.00 2.87
4387 8109 0.809385 TCTTCACGAAGGTAGGCGAG 59.191 55.000 6.94 0.00 38.88 5.03
4397 8119 0.249489 GGTAGGCGAGATCGTTGCAT 60.249 55.000 3.94 4.63 42.22 3.96
4446 8258 0.498511 CACAGATGCGTACGTATGCG 59.501 55.000 29.20 19.41 41.02 4.73
4493 8305 4.318121 GCGTAGATGAATGGATTGTCGAAC 60.318 45.833 0.00 0.00 0.00 3.95
4661 8473 5.825151 CAGGAAAGAGGGATAAGGATGAAAC 59.175 44.000 0.00 0.00 0.00 2.78
4755 8567 2.058595 CCGATTGAGAGGACGGGGT 61.059 63.158 0.00 0.00 41.41 4.95
4757 8569 0.249398 CGATTGAGAGGACGGGGTTT 59.751 55.000 0.00 0.00 0.00 3.27
4816 8640 4.733972 GAAACACTGTCCTAGTTTCTGC 57.266 45.455 11.87 0.00 44.60 4.26
4843 8667 8.413309 AGGTTTACCTTAAAAACAATACTCCC 57.587 34.615 0.00 0.00 46.09 4.30
4845 8669 8.517878 GGTTTACCTTAAAAACAATACTCCCTC 58.482 37.037 4.19 0.00 38.34 4.30
4846 8670 9.293404 GTTTACCTTAAAAACAATACTCCCTCT 57.707 33.333 0.00 0.00 36.92 3.69
4847 8671 8.857694 TTACCTTAAAAACAATACTCCCTCTG 57.142 34.615 0.00 0.00 0.00 3.35
4849 8673 6.940867 ACCTTAAAAACAATACTCCCTCTGAC 59.059 38.462 0.00 0.00 0.00 3.51
4851 8675 3.611766 AAACAATACTCCCTCTGACGG 57.388 47.619 0.00 0.00 0.00 4.79
4852 8676 2.233305 ACAATACTCCCTCTGACGGT 57.767 50.000 0.00 0.00 0.00 4.83
4854 8678 1.409427 CAATACTCCCTCTGACGGTCC 59.591 57.143 5.55 0.00 0.00 4.46
4856 8680 1.556373 TACTCCCTCTGACGGTCCGA 61.556 60.000 20.51 3.77 0.00 4.55
4857 8681 2.360852 TCCCTCTGACGGTCCGAC 60.361 66.667 20.51 13.23 0.00 4.79
4858 8682 3.450115 CCCTCTGACGGTCCGACC 61.450 72.222 20.51 7.59 34.05 4.79
4859 8683 3.450115 CCTCTGACGGTCCGACCC 61.450 72.222 20.51 7.19 33.75 4.46
4860 8684 2.675423 CTCTGACGGTCCGACCCA 60.675 66.667 20.51 11.50 33.75 4.51
4861 8685 2.036731 TCTGACGGTCCGACCCAT 59.963 61.111 20.51 0.02 33.75 4.00
4863 8687 1.033746 TCTGACGGTCCGACCCATAC 61.034 60.000 20.51 2.09 33.75 2.39
4865 8689 2.037687 ACGGTCCGACCCATACCA 59.962 61.111 20.51 0.00 33.75 3.25
4866 8690 1.606885 GACGGTCCGACCCATACCAA 61.607 60.000 20.51 0.00 33.75 3.67
4867 8691 1.143183 CGGTCCGACCCATACCAAG 59.857 63.158 4.91 0.00 33.75 3.61
4868 8692 1.610554 CGGTCCGACCCATACCAAGT 61.611 60.000 4.91 0.00 33.75 3.16
4870 8694 0.107848 GTCCGACCCATACCAAGTGG 60.108 60.000 0.00 0.00 42.17 4.00
4872 8696 1.813753 CGACCCATACCAAGTGGCG 60.814 63.158 0.00 0.00 39.32 5.69
4874 8698 1.002624 ACCCATACCAAGTGGCGTG 60.003 57.895 0.00 0.00 39.32 5.34
4887 8712 1.723003 GTGGCGTGGTTTTAGTCTACG 59.277 52.381 0.00 0.00 41.37 3.51
4895 8720 4.802563 GTGGTTTTAGTCTACGCTCCATAC 59.197 45.833 0.00 0.00 0.00 2.39
4901 8726 1.082038 CTACGCTCCATACGGCTCG 60.082 63.158 0.00 0.00 34.32 5.03
4999 8827 8.477419 ACTATTGAATGGGTTCTCAAGAAAAA 57.523 30.769 0.00 0.00 35.14 1.94
5005 8833 4.086457 TGGGTTCTCAAGAAAAATAGCCC 58.914 43.478 6.83 6.83 35.58 5.19
5047 8876 5.420725 TGTCTACATGTTACCTGCATCTT 57.579 39.130 2.30 0.00 0.00 2.40
5048 8877 5.804639 TGTCTACATGTTACCTGCATCTTT 58.195 37.500 2.30 0.00 0.00 2.52
5073 8903 4.909696 TGAGCTCATACTCTTACTCTGC 57.090 45.455 13.74 0.00 37.58 4.26
5080 8910 4.642437 TCATACTCTTACTCTGCAGGTGAG 59.358 45.833 15.13 15.78 37.55 3.51
5140 8970 6.374333 TGGTCAATCAAAACAGCTATCCTAAC 59.626 38.462 0.00 0.00 0.00 2.34
5325 9197 8.675504 AGCAATCTCACTGAAAAAGATATCAAG 58.324 33.333 5.32 0.00 0.00 3.02
5536 9408 4.720649 GTGATCTACTAGCACCAGACAA 57.279 45.455 0.00 0.00 38.61 3.18
5544 9416 9.765795 ATCTACTAGCACCAGACAATATTTTAC 57.234 33.333 0.00 0.00 0.00 2.01
5670 9547 2.158623 TGATCTCCAACCAACTTGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
5755 9632 2.362397 GCTCACTGGAGACGAATATGGA 59.638 50.000 0.00 0.00 44.26 3.41
5758 9635 5.621104 GCTCACTGGAGACGAATATGGATAG 60.621 48.000 0.00 0.00 44.26 2.08
6056 9933 0.384309 TGCCTCGCTTGTATACTCCG 59.616 55.000 4.17 4.48 0.00 4.63
6065 9942 3.181469 GCTTGTATACTCCGATTGGTCCA 60.181 47.826 4.17 0.00 36.30 4.02
6112 9989 2.030007 GCTTGTTGCTGCAGGAATTGTA 60.030 45.455 24.13 8.33 38.95 2.41
6154 10031 5.537300 GTGGTACTCACCTATCATGTGAT 57.463 43.478 0.68 0.68 45.98 3.06
6394 10271 4.034510 GGATTCAATGCTTTCTGGTACTCG 59.965 45.833 0.00 0.00 0.00 4.18
6637 10516 6.214005 TGGTCAGATCTATGGCATATGAATCA 59.786 38.462 7.81 7.98 0.00 2.57
6833 10712 7.581213 TCAAAGTGGAATGTATGTCTTTGTT 57.419 32.000 12.78 0.00 41.02 2.83
6865 10744 6.370442 CCACAAGTATCGAAGTTTGAATGGTA 59.630 38.462 11.55 0.00 0.00 3.25
6944 10823 3.626977 TGTTTTGCGCTGTCACTTTATG 58.373 40.909 9.73 0.00 0.00 1.90
6945 10824 3.066064 TGTTTTGCGCTGTCACTTTATGT 59.934 39.130 9.73 0.00 0.00 2.29
6946 10825 3.980646 TTTGCGCTGTCACTTTATGTT 57.019 38.095 9.73 0.00 0.00 2.71
6968 10847 2.035832 GTGCAAGTTTGTAGCATGGGTT 59.964 45.455 0.00 0.00 40.78 4.11
7045 10924 2.508716 ACCTCTGCACCAGATGATGATT 59.491 45.455 4.83 0.00 39.92 2.57
7129 11008 3.444034 TGAGGTAAGACACTCTTCATCCG 59.556 47.826 0.00 0.00 37.89 4.18
7235 11115 2.925170 AGCAACCTCGACCTGCCT 60.925 61.111 5.28 0.00 36.73 4.75
7244 11124 2.693591 CCTCGACCTGCCTAAAGTATCA 59.306 50.000 0.00 0.00 0.00 2.15
7400 11280 1.283029 ACCAGTGCAACCTGCTCATAT 59.717 47.619 0.00 0.00 45.31 1.78
7419 11299 2.642139 TAGTGTAACCAGCTACGCAC 57.358 50.000 1.08 0.43 37.80 5.34
7420 11300 0.677288 AGTGTAACCAGCTACGCACA 59.323 50.000 1.08 0.00 37.80 4.57
7621 11501 8.262227 ACAGGTTACGATTTAATGACCATTCTA 58.738 33.333 0.00 0.00 32.50 2.10
7643 11523 9.624373 TTCTAAAGTGTCTATATCTACTTCCGT 57.376 33.333 0.00 0.00 32.61 4.69
7692 11572 6.341316 TGTCTTGCGCTCTTATAAATCTCTT 58.659 36.000 9.73 0.00 0.00 2.85
7834 11714 6.426328 GCATTGATATCATCTCGAAAACTCCT 59.574 38.462 6.17 0.00 0.00 3.69
7931 11811 5.857268 ACTGCAATTTTCCAGTGCTAATTT 58.143 33.333 3.16 0.00 40.55 1.82
7987 11867 6.601741 TTGTCAATCACAAGGCAATTTTTC 57.398 33.333 0.00 0.00 40.29 2.29
8099 11980 5.866633 GGTATGACTCTTCTGTTCTTGTCTG 59.133 44.000 0.00 0.00 0.00 3.51
8211 12092 8.613922 ATGAAATAATGATCCCCAGTTTCTTT 57.386 30.769 0.00 0.00 31.51 2.52
8233 12114 2.162681 CTGATGTGTCAAAAGGGGGAC 58.837 52.381 0.00 0.00 33.05 4.46
8254 12135 3.641436 ACGAGTTGCAGATATATGACCCA 59.359 43.478 0.39 0.00 0.00 4.51
8260 12141 7.749666 AGTTGCAGATATATGACCCAACTATT 58.250 34.615 15.72 0.00 39.45 1.73
8271 12152 6.636454 TGACCCAACTATTATGAGTTTCCT 57.364 37.500 0.00 0.00 37.57 3.36
8272 12153 7.743116 TGACCCAACTATTATGAGTTTCCTA 57.257 36.000 0.00 0.00 37.57 2.94
8273 12154 7.792032 TGACCCAACTATTATGAGTTTCCTAG 58.208 38.462 0.00 0.00 37.57 3.02
8321 12202 6.994868 TTTTCCATGAAATTTACGGTTTCG 57.005 33.333 0.00 0.00 38.18 3.46
8343 12224 8.969121 TTCGAGTTCACGTATTTGTTATTCTA 57.031 30.769 0.00 0.00 34.70 2.10
8480 12363 5.332743 TCCACAAGGAGCATTTTTAGGATT 58.667 37.500 0.00 0.00 39.61 3.01
8489 12372 9.075678 AGGAGCATTTTTAGGATTGATAATGAG 57.924 33.333 0.00 0.00 0.00 2.90
8573 12464 8.848474 ACATGAGCTTGTGTTTACTAATTACT 57.152 30.769 0.00 0.00 0.00 2.24
8670 12563 6.870439 TCAAATCTCTATTGGATATGCTCGTG 59.130 38.462 0.00 0.00 0.00 4.35
8689 12582 4.342951 TCGTGTTTCTTCTGAGGGAGTAAA 59.657 41.667 0.00 0.00 0.00 2.01
8880 12856 2.907917 CGGCCCACGTTCCCAAAA 60.908 61.111 0.00 0.00 37.93 2.44
8884 12860 1.455959 CCCACGTTCCCAAAACCCA 60.456 57.895 0.00 0.00 0.00 4.51
8915 12891 3.508840 CGCCGTTTCAGCCCATCC 61.509 66.667 0.00 0.00 0.00 3.51
8919 12895 1.604378 CGTTTCAGCCCATCCTCCT 59.396 57.895 0.00 0.00 0.00 3.69
8940 12917 5.966935 TCCTTATCCCAAAATCAGTCTCTCT 59.033 40.000 0.00 0.00 0.00 3.10
8943 12920 2.026822 TCCCAAAATCAGTCTCTCTGCC 60.027 50.000 0.00 0.00 43.32 4.85
8945 12922 1.396301 CAAAATCAGTCTCTCTGCCGC 59.604 52.381 0.00 0.00 43.32 6.53
8947 12924 2.290122 AATCAGTCTCTCTGCCGCCG 62.290 60.000 0.00 0.00 43.32 6.46
9334 13370 4.459089 GACCCCCAGCGTGCTCTC 62.459 72.222 0.00 0.00 0.00 3.20
9452 13488 1.078759 CGTCGTCCTGCAACATCCTC 61.079 60.000 0.00 0.00 0.00 3.71
9476 13512 2.262915 CTGCACTCGTGGACCTCC 59.737 66.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.066291 TGATCAAACCGCACCATTAGT 57.934 42.857 0.00 0.00 0.00 2.24
26 27 5.749596 TTATGATCAAACCGCACCATTAG 57.250 39.130 0.00 0.00 0.00 1.73
30 31 6.516739 TTAATTTATGATCAAACCGCACCA 57.483 33.333 0.00 0.00 0.00 4.17
61 62 3.194005 TCTAAAGAATGGATGCCGACC 57.806 47.619 0.00 0.00 0.00 4.79
108 109 4.406972 TGAATCTTCATCTCTTCCGGACAT 59.593 41.667 1.83 0.00 31.01 3.06
118 119 7.867909 TGTACGGTCAATATGAATCTTCATCTC 59.132 37.037 8.63 0.00 44.17 2.75
134 135 9.878667 TTCATTATTAAGAAGATGTACGGTCAA 57.121 29.630 1.56 0.00 0.00 3.18
224 241 3.950395 GCAAAGATTTAGTCCCAGCTCAT 59.050 43.478 0.00 0.00 0.00 2.90
284 311 2.819552 CGGCGGCAAATAACGGGAG 61.820 63.158 10.53 0.00 0.00 4.30
336 364 3.793144 GCCGAGAGCCAAGCAACG 61.793 66.667 0.00 0.00 34.35 4.10
378 406 4.134563 GAGAGTAGACCTTGGCAAAACAA 58.865 43.478 0.00 0.00 0.00 2.83
379 407 3.740115 GAGAGTAGACCTTGGCAAAACA 58.260 45.455 0.00 0.00 0.00 2.83
380 408 2.737252 CGAGAGTAGACCTTGGCAAAAC 59.263 50.000 0.00 0.00 0.00 2.43
419 447 2.815211 GCAACAGGCGCATCTCGA 60.815 61.111 10.83 0.00 41.67 4.04
499 527 2.360767 TATACGCCGGGTGCCAAGT 61.361 57.895 7.67 0.00 36.24 3.16
566 594 4.195225 ACAACGGTCACCAAATTTGTTT 57.805 36.364 16.73 0.71 0.00 2.83
684 3142 4.141846 TGGTGAGAGCATACCATCTTCTTC 60.142 45.833 0.00 0.00 41.80 2.87
702 3167 3.818121 CTTCGGTGCGGGTTGGTGA 62.818 63.158 0.00 0.00 0.00 4.02
743 3208 3.706698 CATCATCTGGTGGTACGTAGTG 58.293 50.000 0.00 0.00 45.73 2.74
785 3252 3.659850 TCACGGTGAGATTATGCGG 57.340 52.632 6.76 0.00 0.00 5.69
796 3263 1.841663 CTTTCGGTTGGCTCACGGTG 61.842 60.000 0.56 0.56 0.00 4.94
799 3266 1.781025 TTGCTTTCGGTTGGCTCACG 61.781 55.000 0.00 0.00 0.00 4.35
800 3267 0.040067 CTTGCTTTCGGTTGGCTCAC 60.040 55.000 0.00 0.00 0.00 3.51
828 3295 1.369983 AGGGAGGGGAGTTAGGAATGT 59.630 52.381 0.00 0.00 0.00 2.71
869 3336 0.916086 TGAGAGGTGGTGTGGTTGTT 59.084 50.000 0.00 0.00 0.00 2.83
870 3337 1.072331 GATGAGAGGTGGTGTGGTTGT 59.928 52.381 0.00 0.00 0.00 3.32
871 3338 1.072173 TGATGAGAGGTGGTGTGGTTG 59.928 52.381 0.00 0.00 0.00 3.77
1408 3876 0.955919 GAGCGACCAAACCTTCCCTG 60.956 60.000 0.00 0.00 0.00 4.45
1485 3956 9.987272 TGTATTGATACTTTGATAGTCTGATGG 57.013 33.333 3.11 0.00 38.33 3.51
1556 4027 4.799255 GCCTTTTCCAATCGACCAAAACAT 60.799 41.667 0.00 0.00 0.00 2.71
1568 4039 1.737793 CTAGCGTTCGCCTTTTCCAAT 59.262 47.619 13.54 0.00 0.00 3.16
1569 4040 1.153353 CTAGCGTTCGCCTTTTCCAA 58.847 50.000 13.54 0.00 0.00 3.53
1597 4068 4.770874 TTTCGGCCGGTGCTAGCC 62.771 66.667 27.83 3.27 46.17 3.93
1598 4069 3.195698 CTTTCGGCCGGTGCTAGC 61.196 66.667 27.83 8.10 37.74 3.42
1599 4070 0.953960 AAACTTTCGGCCGGTGCTAG 60.954 55.000 27.83 16.93 37.74 3.42
1601 4072 2.203294 AAACTTTCGGCCGGTGCT 60.203 55.556 27.83 4.06 37.74 4.40
1696 4470 2.027469 GCCCGAGGAAGAAGAAAACCTA 60.027 50.000 0.00 0.00 32.53 3.08
1698 4472 1.166129 GCCCGAGGAAGAAGAAAACC 58.834 55.000 0.00 0.00 0.00 3.27
1701 4475 0.324943 CCAGCCCGAGGAAGAAGAAA 59.675 55.000 0.00 0.00 0.00 2.52
1934 4709 1.737816 GGAGCTATAACCGTCGCCA 59.262 57.895 0.00 0.00 0.00 5.69
1990 4771 2.667318 CGACGCAATTCCGTGCAGT 61.667 57.895 0.00 0.00 45.19 4.40
2187 4978 2.033550 ACGATTTTTGCTGCAACCGTAA 59.966 40.909 15.72 3.71 0.00 3.18
2256 5048 7.955864 GGATTTTGTTACTACTAGCGAAGTTTG 59.044 37.037 0.00 0.00 39.80 2.93
2294 5086 2.224378 ACTGCACAGCAAAGAGAAGCTA 60.224 45.455 0.00 0.00 39.50 3.32
2370 5163 1.278637 GCAACCGTCACCAAGAACG 59.721 57.895 0.00 0.00 0.00 3.95
2404 5207 2.277737 CCATGGCTGGATGCACCT 59.722 61.111 0.00 0.00 46.37 4.00
2448 5285 3.770040 CCACGACCTCCATCGCCA 61.770 66.667 0.00 0.00 46.22 5.69
2509 5367 1.267574 CCCTAGCTCCAGCCTTCACA 61.268 60.000 0.00 0.00 43.38 3.58
2523 5381 0.474466 TGGCCAGATCCATCCCCTAG 60.474 60.000 0.00 0.00 0.00 3.02
2640 5687 4.137872 TTCACGGACGCGGATCCC 62.138 66.667 12.47 4.97 35.03 3.85
2703 6005 1.202348 GGCGCACCTGCTAAAAATCTT 59.798 47.619 10.83 0.00 39.32 2.40
2704 6006 0.811281 GGCGCACCTGCTAAAAATCT 59.189 50.000 10.83 0.00 39.32 2.40
2705 6007 0.523335 CGGCGCACCTGCTAAAAATC 60.523 55.000 10.83 0.00 39.32 2.17
2715 6017 2.281900 TTTAAAGCCGGCGCACCT 60.282 55.556 23.20 7.42 37.52 4.00
2753 6055 3.347958 TTTTCGCTAGTTGGTTGCTTG 57.652 42.857 0.00 0.00 0.00 4.01
2777 6081 1.358152 ATTGGAACGGAAGGAGTGGA 58.642 50.000 0.00 0.00 0.00 4.02
2779 6083 6.995511 TTATTTATTGGAACGGAAGGAGTG 57.004 37.500 0.00 0.00 0.00 3.51
2803 6107 0.541063 TCTGAAGACGGCCCTACACA 60.541 55.000 0.00 0.00 0.00 3.72
2804 6108 0.606604 TTCTGAAGACGGCCCTACAC 59.393 55.000 0.00 0.00 0.00 2.90
2805 6109 1.344065 TTTCTGAAGACGGCCCTACA 58.656 50.000 0.00 0.00 0.00 2.74
2806 6110 2.693267 ATTTCTGAAGACGGCCCTAC 57.307 50.000 0.00 0.00 0.00 3.18
2807 6111 2.418197 CGAATTTCTGAAGACGGCCCTA 60.418 50.000 0.00 0.00 0.00 3.53
2818 6122 0.036765 CCGGGTCCACGAATTTCTGA 60.037 55.000 0.00 0.00 35.47 3.27
2829 6133 2.359354 CATTTCGCACCGGGTCCA 60.359 61.111 6.32 0.00 0.00 4.02
2848 6152 7.995052 ATTCTAGAAATTTAGGGCCCAATTT 57.005 32.000 25.48 25.48 35.69 1.82
2951 6263 4.067972 AGTTGACCAAGTTGTCATACGT 57.932 40.909 1.45 0.00 44.27 3.57
2983 6295 7.813645 GCATATGCATCAGTTCATCAAGATAA 58.186 34.615 22.84 0.00 41.59 1.75
3054 6366 8.179509 TCAAACCGAAACCCTATTTAATTTGA 57.820 30.769 0.00 0.00 31.76 2.69
3080 6393 0.254178 GATCTGTCCACCAGGTGCAT 59.746 55.000 14.98 0.21 41.83 3.96
3081 6394 1.126948 TGATCTGTCCACCAGGTGCA 61.127 55.000 14.98 6.90 41.83 4.57
3142 6457 7.273164 TGCGTATTCTGAAATAAAAATGCACAG 59.727 33.333 0.00 0.00 0.00 3.66
3194 6525 8.198778 TCGCTATAACACCATCTTGTAAATACA 58.801 33.333 0.00 0.00 0.00 2.29
3204 6535 6.879458 AGTTTTTCTTCGCTATAACACCATCT 59.121 34.615 0.00 0.00 0.00 2.90
3248 6579 6.553953 AGGGGTTGTTTAATGTCAAGTTTT 57.446 33.333 0.00 0.00 0.00 2.43
3263 6594 2.666317 CAGGTTTCTTCAAGGGGTTGT 58.334 47.619 0.00 0.00 0.00 3.32
3299 6630 2.232696 GGCCATGGTAAATGGACGTTTT 59.767 45.455 14.67 0.00 41.64 2.43
3311 6642 1.766496 GCTACTACAAGGGCCATGGTA 59.234 52.381 14.67 4.23 0.00 3.25
3385 6734 7.662669 GGCCATTCCTCATTAAAATTATGCAAT 59.337 33.333 0.00 0.00 0.00 3.56
3386 6735 6.991531 GGCCATTCCTCATTAAAATTATGCAA 59.008 34.615 0.00 0.00 0.00 4.08
3397 6746 0.925558 TGGCTGGCCATTCCTCATTA 59.074 50.000 20.85 2.30 41.89 1.90
3445 7026 2.036992 GTGCCTTCTCCGATGATCTGAT 59.963 50.000 0.00 0.00 0.00 2.90
3475 7057 0.250038 AGTCGTCTGTGCACTGCATT 60.250 50.000 19.41 0.00 41.91 3.56
3514 7096 3.503748 CCCTTCTCGCATGAAGAACTTTT 59.496 43.478 14.86 0.00 44.40 2.27
3518 7100 2.386661 TCCCTTCTCGCATGAAGAAC 57.613 50.000 14.86 0.00 44.40 3.01
3582 7164 3.117175 GACGGAGGCTAGCGCGTTA 62.117 63.158 8.43 4.91 36.88 3.18
3650 7252 1.146041 AGCTTGCCGCCGATCAATA 59.854 52.632 0.00 0.00 40.39 1.90
3652 7254 3.126879 CAGCTTGCCGCCGATCAA 61.127 61.111 0.00 0.00 40.39 2.57
3653 7255 4.393155 ACAGCTTGCCGCCGATCA 62.393 61.111 0.00 0.00 40.39 2.92
3665 7267 1.893137 TGAGTACGGATTGACACAGCT 59.107 47.619 0.00 0.00 0.00 4.24
3680 7282 2.500098 CCGAATGACCCTTTCCTGAGTA 59.500 50.000 0.00 0.00 0.00 2.59
3775 7392 1.978580 CCCCGATTCTAGGCCTATGTT 59.021 52.381 14.30 0.04 0.00 2.71
3841 7459 1.882189 TATCAGGGTCGTCCAGGGGT 61.882 60.000 0.04 0.00 38.24 4.95
3860 7478 0.877071 CTGAAATGAGCGTGCACCTT 59.123 50.000 12.15 0.00 0.00 3.50
3861 7479 0.035317 TCTGAAATGAGCGTGCACCT 59.965 50.000 12.15 9.49 0.00 4.00
3862 7480 0.874390 TTCTGAAATGAGCGTGCACC 59.126 50.000 12.15 4.10 0.00 5.01
3863 7481 2.907910 ATTCTGAAATGAGCGTGCAC 57.092 45.000 6.82 6.82 0.00 4.57
3932 7612 7.000472 CCCATGAGTCAGACCAATATACAATT 59.000 38.462 0.00 0.00 0.00 2.32
3935 7615 4.968719 ACCCATGAGTCAGACCAATATACA 59.031 41.667 0.00 0.00 0.00 2.29
3966 7657 6.864342 TGTCCACTAGAGCTATACAAAACTC 58.136 40.000 0.00 0.00 0.00 3.01
3978 7669 1.208052 TGGCAAGATGTCCACTAGAGC 59.792 52.381 0.00 0.00 0.00 4.09
3979 7670 2.898705 GTGGCAAGATGTCCACTAGAG 58.101 52.381 0.00 0.00 46.90 2.43
3984 7675 0.884704 ACACGTGGCAAGATGTCCAC 60.885 55.000 21.57 11.48 46.95 4.02
3985 7676 0.884259 CACACGTGGCAAGATGTCCA 60.884 55.000 21.57 0.00 0.00 4.02
3987 7678 0.792640 CTCACACGTGGCAAGATGTC 59.207 55.000 21.57 0.00 0.00 3.06
3988 7679 0.392706 TCTCACACGTGGCAAGATGT 59.607 50.000 21.57 5.21 0.00 3.06
3989 7680 1.395954 CATCTCACACGTGGCAAGATG 59.604 52.381 27.57 27.57 34.98 2.90
4070 7790 2.102578 AGGAAACAACTGCTGCACTTT 58.897 42.857 0.00 0.00 0.00 2.66
4075 7795 2.620585 AGAGAAAGGAAACAACTGCTGC 59.379 45.455 0.00 0.00 0.00 5.25
4076 7796 4.024218 CAGAGAGAAAGGAAACAACTGCTG 60.024 45.833 0.00 0.00 0.00 4.41
4077 7797 4.133078 CAGAGAGAAAGGAAACAACTGCT 58.867 43.478 0.00 0.00 0.00 4.24
4078 7798 3.879892 ACAGAGAGAAAGGAAACAACTGC 59.120 43.478 0.00 0.00 0.00 4.40
4079 7799 5.118990 TGACAGAGAGAAAGGAAACAACTG 58.881 41.667 0.00 0.00 0.00 3.16
4080 7800 5.359194 TGACAGAGAGAAAGGAAACAACT 57.641 39.130 0.00 0.00 0.00 3.16
4081 7801 6.433766 CATTGACAGAGAGAAAGGAAACAAC 58.566 40.000 0.00 0.00 0.00 3.32
4082 7802 5.009010 GCATTGACAGAGAGAAAGGAAACAA 59.991 40.000 0.00 0.00 0.00 2.83
4083 7803 4.516698 GCATTGACAGAGAGAAAGGAAACA 59.483 41.667 0.00 0.00 0.00 2.83
4084 7804 4.516698 TGCATTGACAGAGAGAAAGGAAAC 59.483 41.667 0.00 0.00 0.00 2.78
4085 7805 4.717877 TGCATTGACAGAGAGAAAGGAAA 58.282 39.130 0.00 0.00 0.00 3.13
4086 7806 4.356405 TGCATTGACAGAGAGAAAGGAA 57.644 40.909 0.00 0.00 0.00 3.36
4087 7807 4.356405 TTGCATTGACAGAGAGAAAGGA 57.644 40.909 0.00 0.00 0.00 3.36
4088 7808 4.758674 TCTTTGCATTGACAGAGAGAAAGG 59.241 41.667 0.00 0.00 0.00 3.11
4089 7809 5.936686 TCTTTGCATTGACAGAGAGAAAG 57.063 39.130 0.00 0.00 0.00 2.62
4090 7810 6.936335 TGTATCTTTGCATTGACAGAGAGAAA 59.064 34.615 0.00 0.00 34.62 2.52
4091 7811 6.369890 GTGTATCTTTGCATTGACAGAGAGAA 59.630 38.462 0.00 0.00 34.62 2.87
4092 7812 5.871524 GTGTATCTTTGCATTGACAGAGAGA 59.128 40.000 0.00 1.82 34.62 3.10
4093 7813 5.873712 AGTGTATCTTTGCATTGACAGAGAG 59.126 40.000 0.00 0.00 34.62 3.20
4094 7814 5.798132 AGTGTATCTTTGCATTGACAGAGA 58.202 37.500 0.00 4.61 35.50 3.10
4095 7815 5.064452 GGAGTGTATCTTTGCATTGACAGAG 59.936 44.000 0.00 0.00 0.00 3.35
4096 7816 4.937620 GGAGTGTATCTTTGCATTGACAGA 59.062 41.667 0.00 0.00 0.00 3.41
4097 7817 4.696877 TGGAGTGTATCTTTGCATTGACAG 59.303 41.667 0.00 0.00 0.00 3.51
4098 7818 4.650734 TGGAGTGTATCTTTGCATTGACA 58.349 39.130 0.00 0.00 0.00 3.58
4099 7819 5.627499 TTGGAGTGTATCTTTGCATTGAC 57.373 39.130 0.00 0.00 0.00 3.18
4100 7820 5.335897 GCTTTGGAGTGTATCTTTGCATTGA 60.336 40.000 0.00 0.00 0.00 2.57
4101 7821 4.860907 GCTTTGGAGTGTATCTTTGCATTG 59.139 41.667 0.00 0.00 0.00 2.82
4102 7822 4.379813 CGCTTTGGAGTGTATCTTTGCATT 60.380 41.667 0.00 0.00 0.00 3.56
4103 7823 3.127548 CGCTTTGGAGTGTATCTTTGCAT 59.872 43.478 0.00 0.00 0.00 3.96
4104 7824 2.483877 CGCTTTGGAGTGTATCTTTGCA 59.516 45.455 0.00 0.00 0.00 4.08
4105 7825 2.484264 ACGCTTTGGAGTGTATCTTTGC 59.516 45.455 0.00 0.00 44.47 3.68
4178 7899 0.392193 GAGGTGGACATGGTGCTCAG 60.392 60.000 0.00 0.00 0.00 3.35
4206 7927 2.767960 TCATGCTGGAGAAGTGCAGATA 59.232 45.455 0.00 0.00 44.77 1.98
4211 7932 0.321919 TGGTCATGCTGGAGAAGTGC 60.322 55.000 0.00 0.00 0.00 4.40
4269 7990 2.010582 GAGAGCGTCTGTAGGCTGGG 62.011 65.000 0.00 0.00 46.46 4.45
4277 7998 0.323816 TCAGGATGGAGAGCGTCTGT 60.324 55.000 0.00 0.00 36.16 3.41
4299 8021 3.992641 TCGGGAGGCAGGTCAGGA 61.993 66.667 0.00 0.00 0.00 3.86
4311 8033 3.467226 GCGGGATTGGAGTCGGGA 61.467 66.667 0.00 0.00 0.00 5.14
4312 8034 4.891727 CGCGGGATTGGAGTCGGG 62.892 72.222 0.00 0.00 0.00 5.14
4313 8035 4.891727 CCGCGGGATTGGAGTCGG 62.892 72.222 20.10 0.00 0.00 4.79
4364 8086 1.272769 GCCTACCTTCGTGAAGACACT 59.727 52.381 11.11 0.00 43.99 3.55
4365 8087 1.711206 GCCTACCTTCGTGAAGACAC 58.289 55.000 11.11 0.00 40.79 3.67
4366 8088 0.242825 CGCCTACCTTCGTGAAGACA 59.757 55.000 11.11 0.00 40.79 3.41
4367 8089 0.524862 TCGCCTACCTTCGTGAAGAC 59.475 55.000 11.11 0.00 40.79 3.01
4368 8090 0.809385 CTCGCCTACCTTCGTGAAGA 59.191 55.000 11.11 0.00 40.79 2.87
4369 8091 0.809385 TCTCGCCTACCTTCGTGAAG 59.191 55.000 2.57 2.57 38.14 3.02
4370 8092 1.404391 GATCTCGCCTACCTTCGTGAA 59.596 52.381 0.00 0.00 33.04 3.18
4371 8093 1.022735 GATCTCGCCTACCTTCGTGA 58.977 55.000 0.00 0.00 33.67 4.35
4372 8094 0.317103 CGATCTCGCCTACCTTCGTG 60.317 60.000 0.00 0.00 0.00 4.35
4446 8258 5.582665 CAGCCTGAATCTAAAGGAAGTACAC 59.417 44.000 0.00 0.00 35.40 2.90
4454 8266 2.029838 ACGCAGCCTGAATCTAAAGG 57.970 50.000 0.00 0.00 36.58 3.11
4493 8305 4.059459 GCACGACCGCACGAACAG 62.059 66.667 6.49 0.00 37.03 3.16
4548 8360 2.061028 GCATAACAGCAAACAGTTGGC 58.939 47.619 4.23 4.23 35.10 4.52
4628 8440 7.147479 CCTTATCCCTCTTTCCTGTGAAGAATA 60.147 40.741 0.00 0.00 33.10 1.75
4688 8500 1.080230 CTGGACTCTGCACCACTCG 60.080 63.158 0.00 0.00 32.44 4.18
4765 8577 8.760103 TGTGTTTCTTGTTTTTAAGGTAAACC 57.240 30.769 0.00 0.00 35.20 3.27
4770 8582 9.016438 TCTAGTTGTGTTTCTTGTTTTTAAGGT 57.984 29.630 0.00 0.00 0.00 3.50
4771 8583 9.849166 TTCTAGTTGTGTTTCTTGTTTTTAAGG 57.151 29.630 0.00 0.00 0.00 2.69
4783 8595 5.585047 AGGACAGTGTTTCTAGTTGTGTTTC 59.415 40.000 0.00 0.00 0.00 2.78
4786 8598 4.755266 AGGACAGTGTTTCTAGTTGTGT 57.245 40.909 0.00 0.00 0.00 3.72
4787 8599 5.844004 ACTAGGACAGTGTTTCTAGTTGTG 58.156 41.667 23.33 9.89 39.25 3.33
4834 8658 1.409427 GGACCGTCAGAGGGAGTATTG 59.591 57.143 16.38 0.00 35.02 1.90
4841 8665 3.450115 GGTCGGACCGTCAGAGGG 61.450 72.222 14.79 7.67 35.02 4.30
4842 8666 3.450115 GGGTCGGACCGTCAGAGG 61.450 72.222 20.35 0.00 39.83 3.69
4843 8667 0.750546 TATGGGTCGGACCGTCAGAG 60.751 60.000 20.35 0.00 39.83 3.35
4845 8669 1.436336 GTATGGGTCGGACCGTCAG 59.564 63.158 20.35 0.00 39.83 3.51
4846 8670 2.053865 GGTATGGGTCGGACCGTCA 61.054 63.158 20.35 14.04 39.83 4.35
4847 8671 1.606885 TTGGTATGGGTCGGACCGTC 61.607 60.000 20.35 8.37 39.83 4.79
4849 8673 1.143183 CTTGGTATGGGTCGGACCG 59.857 63.158 20.35 7.84 39.83 4.79
4851 8675 0.107848 CCACTTGGTATGGGTCGGAC 60.108 60.000 0.00 0.00 33.18 4.79
4852 8676 1.906105 GCCACTTGGTATGGGTCGGA 61.906 60.000 0.00 0.00 37.73 4.55
4854 8678 1.813753 CGCCACTTGGTATGGGTCG 60.814 63.158 0.00 0.00 37.73 4.79
4856 8680 1.002624 CACGCCACTTGGTATGGGT 60.003 57.895 0.00 0.00 37.73 4.51
4857 8681 1.748879 CCACGCCACTTGGTATGGG 60.749 63.158 10.61 0.00 38.14 4.00
4858 8682 1.002624 ACCACGCCACTTGGTATGG 60.003 57.895 14.99 14.99 46.01 2.74
4859 8683 4.713946 ACCACGCCACTTGGTATG 57.286 55.556 0.00 0.00 46.01 2.39
4863 8687 1.265905 GACTAAAACCACGCCACTTGG 59.734 52.381 0.00 0.00 40.32 3.61
4865 8689 2.632987 AGACTAAAACCACGCCACTT 57.367 45.000 0.00 0.00 0.00 3.16
4866 8690 2.608752 CGTAGACTAAAACCACGCCACT 60.609 50.000 0.00 0.00 0.00 4.00
4867 8691 1.723003 CGTAGACTAAAACCACGCCAC 59.277 52.381 0.00 0.00 0.00 5.01
4868 8692 2.068837 CGTAGACTAAAACCACGCCA 57.931 50.000 0.00 0.00 0.00 5.69
4872 8696 3.308438 TGGAGCGTAGACTAAAACCAC 57.692 47.619 0.00 0.00 0.00 4.16
4874 8698 4.040376 CGTATGGAGCGTAGACTAAAACC 58.960 47.826 0.00 0.00 0.00 3.27
4877 8701 2.033801 GCCGTATGGAGCGTAGACTAAA 59.966 50.000 4.73 0.00 37.49 1.85
4878 8702 1.605710 GCCGTATGGAGCGTAGACTAA 59.394 52.381 4.73 0.00 37.49 2.24
4879 8703 1.202734 AGCCGTATGGAGCGTAGACTA 60.203 52.381 4.73 0.00 37.49 2.59
4880 8704 0.465824 AGCCGTATGGAGCGTAGACT 60.466 55.000 4.73 0.00 37.49 3.24
4881 8705 0.040246 GAGCCGTATGGAGCGTAGAC 60.040 60.000 4.73 0.00 37.49 2.59
4887 8712 0.244994 ATCATCGAGCCGTATGGAGC 59.755 55.000 4.73 0.00 37.49 4.70
4888 8713 2.732412 AATCATCGAGCCGTATGGAG 57.268 50.000 4.73 0.00 37.49 3.86
4895 8720 1.331756 CCCTTCAAAATCATCGAGCCG 59.668 52.381 0.00 0.00 0.00 5.52
4901 8726 9.927668 TCTTCATTTTAACCCTTCAAAATCATC 57.072 29.630 0.00 0.00 33.23 2.92
4970 8798 8.477419 TCTTGAGAACCCATTCAATAGTTTTT 57.523 30.769 0.00 0.00 37.29 1.94
5030 8859 7.629222 GCTCATAAAAAGATGCAGGTAACATGT 60.629 37.037 0.00 0.00 41.41 3.21
5031 8860 6.694411 GCTCATAAAAAGATGCAGGTAACATG 59.306 38.462 0.00 0.00 41.41 3.21
5039 8868 7.441760 AGAGTATGAGCTCATAAAAAGATGCAG 59.558 37.037 32.72 0.00 40.18 4.41
5047 8876 7.923344 GCAGAGTAAGAGTATGAGCTCATAAAA 59.077 37.037 32.72 15.12 40.18 1.52
5048 8877 7.068716 TGCAGAGTAAGAGTATGAGCTCATAAA 59.931 37.037 32.72 15.85 40.18 1.40
5073 8903 3.446873 ACTAGCAGACTCATTCTCACCTG 59.553 47.826 0.00 0.00 28.96 4.00
5080 8910 2.197577 GCCGAACTAGCAGACTCATTC 58.802 52.381 0.00 0.00 0.00 2.67
5132 8962 5.386060 ACGACTGATGGATCTGTTAGGATA 58.614 41.667 0.00 0.00 38.78 2.59
5140 8970 4.383850 AGAAGAACGACTGATGGATCTG 57.616 45.455 0.00 0.00 0.00 2.90
5257 9087 6.703165 CAGCTGCAGATTTATATGTGTCAGTA 59.297 38.462 20.43 0.00 34.61 2.74
5258 9088 5.526479 CAGCTGCAGATTTATATGTGTCAGT 59.474 40.000 20.43 3.02 34.61 3.41
5261 9133 5.525012 TCACAGCTGCAGATTTATATGTGTC 59.475 40.000 20.43 0.00 38.31 3.67
5270 9142 4.340381 AGTTTCTTTCACAGCTGCAGATTT 59.660 37.500 20.43 0.00 0.00 2.17
5325 9197 2.158986 AGACTGTCTGCATCATACCTGC 60.159 50.000 10.00 0.00 40.10 4.85
5670 9547 4.202336 TGTTTGGTCGGTATAGGTGTTGAA 60.202 41.667 0.00 0.00 0.00 2.69
5755 9632 3.941483 GCTACAAGCCACATGACAACTAT 59.059 43.478 0.00 0.00 34.48 2.12
5758 9635 1.879380 TGCTACAAGCCACATGACAAC 59.121 47.619 0.00 0.00 41.51 3.32
6056 9933 8.798859 ATATGAGTATTATGCTTGGACCAATC 57.201 34.615 7.54 3.96 0.00 2.67
6112 9989 2.376518 ACCATGGAGGATTATGCCGATT 59.623 45.455 21.47 0.00 41.22 3.34
6154 10031 2.318908 GCCATTGCAATCCTTGGGATA 58.681 47.619 16.57 0.00 42.27 2.59
6394 10271 5.306532 AGACAACAATGAACAGATGATGC 57.693 39.130 0.00 0.00 0.00 3.91
6637 10516 6.410942 TGATCACATACATCGAGGATCTTT 57.589 37.500 3.06 0.00 33.93 2.52
6742 10621 3.624777 CCTGGATAAGTCATTGCCTGTT 58.375 45.455 0.00 0.00 0.00 3.16
6833 10712 5.147330 ACTTCGATACTTGTGGACATTGA 57.853 39.130 0.00 0.00 0.00 2.57
6865 10744 3.264450 AGCTTCAGTACCATGGTAAGCTT 59.736 43.478 32.96 22.38 40.99 3.74
6944 10823 3.052036 CCATGCTACAAACTTGCACAAC 58.948 45.455 0.00 0.00 39.63 3.32
6945 10824 2.035704 CCCATGCTACAAACTTGCACAA 59.964 45.455 0.00 0.00 39.63 3.33
6946 10825 1.612950 CCCATGCTACAAACTTGCACA 59.387 47.619 0.00 0.00 39.63 4.57
7045 10924 6.042897 AGAGATCTGATGTGGATGCTCAAATA 59.957 38.462 0.00 0.00 0.00 1.40
7235 11115 6.429692 CGTATGGGCCATCAATTGATACTTTA 59.570 38.462 25.07 8.20 32.63 1.85
7244 11124 1.691196 CACCGTATGGGCCATCAATT 58.309 50.000 25.07 1.01 40.62 2.32
7642 11522 4.734398 TTGTCATGGAAAATGCCCATAC 57.266 40.909 0.00 0.00 42.18 2.39
7643 11523 4.961099 TCATTGTCATGGAAAATGCCCATA 59.039 37.500 4.58 0.00 42.18 2.74
7692 11572 1.210722 TCACACCCTACAAGCACAACA 59.789 47.619 0.00 0.00 0.00 3.33
7834 11714 6.420913 AGCTGTTTAGGAGAAAGACTTACA 57.579 37.500 0.00 0.00 0.00 2.41
7931 11811 1.078708 GGAATGAAGGGTTCGCGGA 60.079 57.895 6.13 0.00 0.00 5.54
7987 11867 1.271379 TGTGTACGGACCTGCAAGTAG 59.729 52.381 0.00 0.00 0.00 2.57
8164 12045 4.800784 TCGTACGATGATTTGACTGACAA 58.199 39.130 15.28 0.00 36.65 3.18
8211 12092 2.445145 TCCCCCTTTTGACACATCAGAA 59.555 45.455 0.00 0.00 35.83 3.02
8233 12114 4.257267 TGGGTCATATATCTGCAACTCG 57.743 45.455 0.00 0.00 0.00 4.18
8313 12194 2.712057 ATACGTGAACTCGAAACCGT 57.288 45.000 0.00 0.00 34.70 4.83
8321 12202 9.916397 CCATTAGAATAACAAATACGTGAACTC 57.084 33.333 0.00 0.00 0.00 3.01
8343 12224 3.054287 TGCCATTGCATTCCATTTCCATT 60.054 39.130 0.00 0.00 44.23 3.16
8480 12363 8.461222 GTCACATTTCATTTCACCTCATTATCA 58.539 33.333 0.00 0.00 0.00 2.15
8489 12372 5.922544 CAGGAAAGTCACATTTCATTTCACC 59.077 40.000 2.05 0.00 40.29 4.02
8534 12425 4.097418 AGCTCATGTTCTACCCTAGTTGT 58.903 43.478 0.00 0.00 0.00 3.32
8535 12426 4.744795 AGCTCATGTTCTACCCTAGTTG 57.255 45.455 0.00 0.00 0.00 3.16
8536 12427 4.532521 ACAAGCTCATGTTCTACCCTAGTT 59.467 41.667 0.00 0.00 0.00 2.24
8804 12771 4.455533 CAGCACCAGTTAACAGAGCATAAA 59.544 41.667 16.34 0.00 0.00 1.40
8805 12772 4.002982 CAGCACCAGTTAACAGAGCATAA 58.997 43.478 16.34 0.00 0.00 1.90
8915 12891 6.099557 AGAGAGACTGATTTTGGGATAAGGAG 59.900 42.308 0.00 0.00 0.00 3.69
8949 12926 4.394712 GAGGTGGTGGCGGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
8956 12933 4.660938 GGTGGTGGAGGTGGTGGC 62.661 72.222 0.00 0.00 0.00 5.01
9096 13087 1.614824 AGGAGGAGCAGGTGGGAAG 60.615 63.158 0.00 0.00 0.00 3.46
9334 13370 2.668457 GCGTTCATGAGAGTGTTGTAGG 59.332 50.000 0.00 0.00 0.00 3.18
9452 13488 2.031516 CCACGAGTGCAGCTTGAGG 61.032 63.158 9.64 7.69 33.89 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.