Multiple sequence alignment - TraesCS1D01G283500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G283500 chr1D 100.000 3296 0 0 1 3296 381312940 381316235 0.000000e+00 6087
1 TraesCS1D01G283500 chr1A 88.374 3432 161 85 4 3294 481931923 481935257 0.000000e+00 3908
2 TraesCS1D01G283500 chr1B 91.744 2786 89 44 602 3294 511451323 511454060 0.000000e+00 3740
3 TraesCS1D01G283500 chr1B 88.994 636 38 15 1 610 511450569 511451198 0.000000e+00 758
4 TraesCS1D01G283500 chr3B 85.238 989 132 12 1057 2038 617268771 617267790 0.000000e+00 1005
5 TraesCS1D01G283500 chr3A 84.524 1008 127 18 1057 2039 606830515 606829512 0.000000e+00 970
6 TraesCS1D01G283500 chr3D 84.337 996 136 14 1057 2039 463811404 463810416 0.000000e+00 957
7 TraesCS1D01G283500 chr4D 79.507 771 119 22 1275 2038 42238308 42237570 2.270000e-141 512
8 TraesCS1D01G283500 chr4D 100.000 62 0 0 1111 1172 228102956 228102895 7.470000e-22 115
9 TraesCS1D01G283500 chr4D 98.387 62 1 0 1111 1172 41791145 41791084 3.480000e-20 110
10 TraesCS1D01G283500 chr4D 98.387 62 1 0 1111 1172 41798805 41798744 3.480000e-20 110
11 TraesCS1D01G283500 chr4A 78.497 772 125 25 1275 2038 597458292 597457554 4.980000e-128 468
12 TraesCS1D01G283500 chr4A 78.165 774 131 19 1275 2041 597590707 597589965 3.000000e-125 459
13 TraesCS1D01G283500 chr4A 83.453 139 23 0 1275 1413 597617490 597617352 2.670000e-26 130
14 TraesCS1D01G283500 chr7D 100.000 61 0 0 1111 1171 334651341 334651281 2.690000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G283500 chr1D 381312940 381316235 3295 False 6087 6087 100.000 1 3296 1 chr1D.!!$F1 3295
1 TraesCS1D01G283500 chr1A 481931923 481935257 3334 False 3908 3908 88.374 4 3294 1 chr1A.!!$F1 3290
2 TraesCS1D01G283500 chr1B 511450569 511454060 3491 False 2249 3740 90.369 1 3294 2 chr1B.!!$F1 3293
3 TraesCS1D01G283500 chr3B 617267790 617268771 981 True 1005 1005 85.238 1057 2038 1 chr3B.!!$R1 981
4 TraesCS1D01G283500 chr3A 606829512 606830515 1003 True 970 970 84.524 1057 2039 1 chr3A.!!$R1 982
5 TraesCS1D01G283500 chr3D 463810416 463811404 988 True 957 957 84.337 1057 2039 1 chr3D.!!$R1 982
6 TraesCS1D01G283500 chr4D 42237570 42238308 738 True 512 512 79.507 1275 2038 1 chr4D.!!$R3 763
7 TraesCS1D01G283500 chr4A 597457554 597458292 738 True 468 468 78.497 1275 2038 1 chr4A.!!$R1 763
8 TraesCS1D01G283500 chr4A 597589965 597590707 742 True 459 459 78.165 1275 2041 1 chr4A.!!$R2 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 229 0.103937 GAGCTCTGGAGAACCGATGG 59.896 60.0 6.43 0.00 39.42 3.51 F
676 844 0.250295 GCTTGGTCACTGGCAGTGTA 60.250 55.0 38.27 25.65 46.03 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1262 2.046314 CCGGCCACCACTACAAGG 60.046 66.667 2.24 0.0 0.0 3.61 R
2630 2908 0.036199 GCAAAATGGCCATGGAAGCA 60.036 50.000 21.63 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.276590 TGATCCAAATCATCACACTATACATTC 57.723 33.333 0.00 0.00 36.98 2.67
69 73 2.111041 GCATTATCTGCCGTTCTTGC 57.889 50.000 0.00 0.00 45.66 4.01
201 222 2.364317 CCCGGGAGCTCTGGAGAA 60.364 66.667 18.48 0.00 44.90 2.87
208 229 0.103937 GAGCTCTGGAGAACCGATGG 59.896 60.000 6.43 0.00 39.42 3.51
220 241 4.010349 AGAACCGATGGGAAACATTCTTC 58.990 43.478 0.00 0.00 40.72 2.87
254 279 5.657474 TGATCGGTTCCAATACAACTCTAC 58.343 41.667 0.00 0.00 0.00 2.59
262 287 5.891451 TCCAATACAACTCTACACGATCTG 58.109 41.667 0.00 0.00 0.00 2.90
265 290 6.638873 CCAATACAACTCTACACGATCTGATC 59.361 42.308 7.60 7.60 0.00 2.92
266 291 6.944234 ATACAACTCTACACGATCTGATCA 57.056 37.500 17.19 0.00 0.00 2.92
267 292 5.644977 ACAACTCTACACGATCTGATCAA 57.355 39.130 17.19 0.00 0.00 2.57
268 293 5.645624 ACAACTCTACACGATCTGATCAAG 58.354 41.667 17.19 10.80 0.00 3.02
269 294 5.184096 ACAACTCTACACGATCTGATCAAGT 59.816 40.000 17.19 15.41 0.00 3.16
270 295 5.906113 ACTCTACACGATCTGATCAAGTT 57.094 39.130 17.19 1.66 0.00 2.66
272 297 5.416013 ACTCTACACGATCTGATCAAGTTCA 59.584 40.000 17.19 4.79 0.00 3.18
285 315 8.807118 TCTGATCAAGTTCATAGTATATCACCC 58.193 37.037 0.00 0.00 0.00 4.61
406 436 3.687698 TCATTTTACGGCAAAGCTACTCC 59.312 43.478 0.00 0.00 0.00 3.85
407 437 3.412237 TTTTACGGCAAAGCTACTCCT 57.588 42.857 0.00 0.00 0.00 3.69
408 438 2.667473 TTACGGCAAAGCTACTCCTC 57.333 50.000 0.00 0.00 0.00 3.71
409 439 1.848652 TACGGCAAAGCTACTCCTCT 58.151 50.000 0.00 0.00 0.00 3.69
411 441 0.532573 CGGCAAAGCTACTCCTCTCA 59.467 55.000 0.00 0.00 0.00 3.27
413 443 2.362397 CGGCAAAGCTACTCCTCTCATA 59.638 50.000 0.00 0.00 0.00 2.15
415 445 3.386402 GGCAAAGCTACTCCTCTCATACT 59.614 47.826 0.00 0.00 0.00 2.12
443 474 4.688879 TGTTTTTATCCACGCAGAGTACTG 59.311 41.667 0.00 0.00 45.91 2.74
446 478 1.257750 ATCCACGCAGAGTACTGGCA 61.258 55.000 0.00 0.00 43.62 4.92
451 483 0.458543 CGCAGAGTACTGGCATCGTT 60.459 55.000 0.00 0.00 43.62 3.85
549 584 0.815213 GCACAGAGCCACAACAGTGA 60.815 55.000 0.00 0.00 37.23 3.41
564 599 1.472480 CAGTGAGCAATTAAACCCGGG 59.528 52.381 22.25 22.25 0.00 5.73
565 600 1.074889 AGTGAGCAATTAAACCCGGGT 59.925 47.619 24.16 24.16 0.00 5.28
566 601 1.471287 GTGAGCAATTAAACCCGGGTC 59.529 52.381 30.40 12.96 0.00 4.46
567 602 0.730840 GAGCAATTAAACCCGGGTCG 59.269 55.000 30.40 12.44 0.00 4.79
587 622 4.415150 CCGGGCCAGCATGACAGT 62.415 66.667 4.39 0.00 39.69 3.55
591 626 2.753043 GCCAGCATGACAGTGGGG 60.753 66.667 0.00 0.00 39.69 4.96
671 839 2.431683 GGAGCTTGGTCACTGGCA 59.568 61.111 2.24 0.00 0.00 4.92
673 841 1.072159 GAGCTTGGTCACTGGCAGT 59.928 57.895 15.88 15.88 0.00 4.40
675 843 1.526917 GCTTGGTCACTGGCAGTGT 60.527 57.895 38.27 10.61 46.03 3.55
676 844 0.250295 GCTTGGTCACTGGCAGTGTA 60.250 55.000 38.27 25.65 46.03 2.90
677 845 1.800805 CTTGGTCACTGGCAGTGTAG 58.199 55.000 38.27 27.47 46.03 2.74
678 846 1.070758 CTTGGTCACTGGCAGTGTAGT 59.929 52.381 38.27 9.04 46.03 2.73
679 847 2.003937 TGGTCACTGGCAGTGTAGTA 57.996 50.000 38.27 22.29 46.03 1.82
680 848 1.893137 TGGTCACTGGCAGTGTAGTAG 59.107 52.381 38.27 18.85 46.03 2.57
681 849 1.893801 GGTCACTGGCAGTGTAGTAGT 59.106 52.381 38.27 6.73 46.03 2.73
825 1016 2.282180 CAACCAGACCCAACCCCG 60.282 66.667 0.00 0.00 0.00 5.73
840 1034 1.208535 ACCCCGCAGATGTTTAATCGA 59.791 47.619 0.00 0.00 0.00 3.59
1044 1268 2.642254 CCGGCTGGTCGTCCTTGTA 61.642 63.158 2.29 0.00 34.23 2.41
2019 2285 2.435059 GCCGTCTCCAAGGTGCTC 60.435 66.667 0.00 0.00 0.00 4.26
2255 2521 1.502690 ATTGGGCGGTGGTGTATAGA 58.497 50.000 0.00 0.00 0.00 1.98
2394 2661 6.959639 ATTGTTTCTTCTTTGTTGCTCCTA 57.040 33.333 0.00 0.00 0.00 2.94
2441 2712 5.269505 TGTACACAATGGGTTTGAAAAGG 57.730 39.130 0.00 0.00 38.76 3.11
2442 2713 4.712337 TGTACACAATGGGTTTGAAAAGGT 59.288 37.500 0.00 0.00 38.76 3.50
2513 2791 0.947244 CAGCGTTCTTTTCACTGCCT 59.053 50.000 0.00 0.00 0.00 4.75
2516 2794 0.662619 CGTTCTTTTCACTGCCTGCA 59.337 50.000 0.00 0.00 0.00 4.41
2572 2850 1.058695 GTAAAGAATCACACGCGACCG 59.941 52.381 15.93 2.72 41.14 4.79
2627 2905 0.934496 CTGTTTCTTCGTGGACGCAA 59.066 50.000 0.00 0.00 39.60 4.85
2629 2907 0.384353 GTTTCTTCGTGGACGCAAGC 60.384 55.000 0.00 0.00 45.62 4.01
2630 2908 0.531974 TTTCTTCGTGGACGCAAGCT 60.532 50.000 0.00 0.00 45.62 3.74
2631 2909 1.221466 TTCTTCGTGGACGCAAGCTG 61.221 55.000 0.00 0.00 45.62 4.24
2632 2910 3.300667 CTTCGTGGACGCAAGCTGC 62.301 63.158 0.00 0.00 45.62 5.25
2633 2911 3.807631 TTCGTGGACGCAAGCTGCT 62.808 57.895 0.00 0.00 42.25 4.24
2634 2912 3.349006 CGTGGACGCAAGCTGCTT 61.349 61.111 9.53 9.53 42.25 3.91
2635 2913 2.558313 GTGGACGCAAGCTGCTTC 59.442 61.111 12.82 6.83 42.25 3.86
2639 2917 1.136147 GACGCAAGCTGCTTCCATG 59.864 57.895 12.82 3.06 42.25 3.66
2640 2918 2.262471 GACGCAAGCTGCTTCCATGG 62.262 60.000 12.82 4.97 42.25 3.66
2656 2944 2.557317 CATGGCCATTTTGCTGAATCC 58.443 47.619 17.92 0.00 0.00 3.01
2681 2975 1.002011 GGAAGTGGGGAAGTGGAGC 60.002 63.158 0.00 0.00 0.00 4.70
2691 2985 2.232298 GAAGTGGAGCGGAGGTGGAG 62.232 65.000 0.00 0.00 39.88 3.86
2696 2990 4.787280 AGCGGAGGTGGAGGGAGG 62.787 72.222 0.00 0.00 36.17 4.30
2698 2992 2.284699 CGGAGGTGGAGGGAGGTT 60.285 66.667 0.00 0.00 0.00 3.50
2942 3279 1.279840 GACACGACTTGCTTGTGGC 59.720 57.895 0.00 0.00 38.50 5.01
3091 3428 2.752238 ACCTCCTCGAGCCTGACG 60.752 66.667 6.99 0.00 0.00 4.35
3117 3454 3.073735 AGCTCGAGCCCACCTCTG 61.074 66.667 32.94 0.00 43.38 3.35
3118 3455 4.828925 GCTCGAGCCCACCTCTGC 62.829 72.222 27.22 0.00 38.49 4.26
3119 3456 4.504916 CTCGAGCCCACCTCTGCG 62.505 72.222 0.00 0.00 38.49 5.18
3128 3465 2.203640 ACCTCTGCGTGGACTCCA 60.204 61.111 0.00 0.00 0.00 3.86
3129 3466 2.279069 ACCTCTGCGTGGACTCCAG 61.279 63.158 0.00 0.00 32.34 3.86
3130 3467 2.125753 CTCTGCGTGGACTCCAGC 60.126 66.667 0.00 5.38 32.34 4.85
3131 3468 3.978723 CTCTGCGTGGACTCCAGCG 62.979 68.421 0.00 6.83 32.34 5.18
3132 3469 4.056125 CTGCGTGGACTCCAGCGA 62.056 66.667 18.56 7.41 32.34 4.93
3133 3470 3.362399 CTGCGTGGACTCCAGCGAT 62.362 63.158 18.56 0.00 32.34 4.58
3136 3473 2.105128 GTGGACTCCAGCGATCGG 59.895 66.667 18.30 1.63 32.34 4.18
3137 3474 3.838271 TGGACTCCAGCGATCGGC 61.838 66.667 18.30 9.32 44.05 5.54
3138 3475 4.593864 GGACTCCAGCGATCGGCC 62.594 72.222 18.30 0.22 45.17 6.13
3139 3476 3.532155 GACTCCAGCGATCGGCCT 61.532 66.667 18.30 3.01 45.17 5.19
3140 3477 3.492311 GACTCCAGCGATCGGCCTC 62.492 68.421 18.30 0.00 45.17 4.70
3141 3478 3.531207 CTCCAGCGATCGGCCTCA 61.531 66.667 18.30 0.00 45.17 3.86
3142 3479 3.781770 CTCCAGCGATCGGCCTCAC 62.782 68.421 18.30 0.00 45.17 3.51
3155 3492 1.739049 CCTCACTCGATCTCCCTGC 59.261 63.158 0.00 0.00 0.00 4.85
3245 3591 2.983592 GGCAACAACGGGACTGGG 60.984 66.667 0.00 0.00 0.00 4.45
3294 3640 0.320160 GGTACCACGGCTTCGAGTTT 60.320 55.000 7.15 0.00 37.63 2.66
3295 3641 0.788391 GTACCACGGCTTCGAGTTTG 59.212 55.000 0.00 0.00 37.63 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.862944 TGCGTGTTTAGAAAAGAAAACAAG 57.137 33.333 8.76 8.76 44.64 3.16
69 73 0.317770 AATGCACCAACGCAGAAACG 60.318 50.000 0.00 0.00 46.99 3.60
135 150 9.563748 AATCCTCTATGTAGTAAGTACTGACTC 57.436 37.037 16.66 9.10 37.10 3.36
137 152 9.953697 CAAATCCTCTATGTAGTAAGTACTGAC 57.046 37.037 1.60 1.60 37.10 3.51
193 214 1.278127 GTTTCCCATCGGTTCTCCAGA 59.722 52.381 0.00 0.00 0.00 3.86
194 215 1.003118 TGTTTCCCATCGGTTCTCCAG 59.997 52.381 0.00 0.00 0.00 3.86
201 222 2.723273 GGAAGAATGTTTCCCATCGGT 58.277 47.619 0.00 0.00 40.64 4.69
208 229 2.159379 GCGTGATGGGAAGAATGTTTCC 60.159 50.000 0.80 0.80 44.82 3.13
262 287 8.140112 AGGGGTGATATACTATGAACTTGATC 57.860 38.462 0.00 0.00 0.00 2.92
265 290 6.390721 CGAGGGGTGATATACTATGAACTTG 58.609 44.000 0.00 0.00 0.00 3.16
266 291 5.047235 GCGAGGGGTGATATACTATGAACTT 60.047 44.000 0.00 0.00 0.00 2.66
267 292 4.463186 GCGAGGGGTGATATACTATGAACT 59.537 45.833 0.00 0.00 0.00 3.01
268 293 4.463186 AGCGAGGGGTGATATACTATGAAC 59.537 45.833 0.00 0.00 0.00 3.18
269 294 4.673968 AGCGAGGGGTGATATACTATGAA 58.326 43.478 0.00 0.00 0.00 2.57
270 295 4.317530 AGCGAGGGGTGATATACTATGA 57.682 45.455 0.00 0.00 0.00 2.15
272 297 3.195825 GCAAGCGAGGGGTGATATACTAT 59.804 47.826 0.00 0.00 0.00 2.12
285 315 1.727022 CAAAAGCACGCAAGCGAGG 60.727 57.895 22.30 13.30 42.83 4.63
407 437 9.146984 CGTGGATAAAAACAGTTAAGTATGAGA 57.853 33.333 0.00 0.00 0.00 3.27
408 438 7.903431 GCGTGGATAAAAACAGTTAAGTATGAG 59.097 37.037 0.00 0.00 0.00 2.90
409 439 7.388224 TGCGTGGATAAAAACAGTTAAGTATGA 59.612 33.333 0.00 0.00 0.00 2.15
411 441 7.604927 TCTGCGTGGATAAAAACAGTTAAGTAT 59.395 33.333 0.00 0.00 0.00 2.12
413 443 5.761234 TCTGCGTGGATAAAAACAGTTAAGT 59.239 36.000 0.00 0.00 0.00 2.24
415 445 5.761234 ACTCTGCGTGGATAAAAACAGTTAA 59.239 36.000 0.00 0.00 0.00 2.01
432 463 0.458543 AACGATGCCAGTACTCTGCG 60.459 55.000 8.87 4.56 40.09 5.18
443 474 3.466836 TGAGATAACATGGAACGATGCC 58.533 45.455 0.00 0.00 0.00 4.40
446 478 4.993584 GCTGATGAGATAACATGGAACGAT 59.006 41.667 0.00 0.00 0.00 3.73
451 483 3.181451 GGGTGCTGATGAGATAACATGGA 60.181 47.826 0.00 0.00 0.00 3.41
549 584 0.678684 CCGACCCGGGTTTAATTGCT 60.679 55.000 30.89 0.00 44.15 3.91
671 839 2.634600 CAGCGAGGAGACTACTACACT 58.365 52.381 0.00 0.00 44.43 3.55
673 841 1.558294 TCCAGCGAGGAGACTACTACA 59.442 52.381 0.00 0.00 43.07 2.74
674 842 2.328819 TCCAGCGAGGAGACTACTAC 57.671 55.000 0.00 0.00 43.07 2.73
773 964 2.101415 GGAAGTGCAAAGCCTTTGTTCT 59.899 45.455 17.88 13.06 42.56 3.01
825 1016 1.332028 CGCGGTCGATTAAACATCTGC 60.332 52.381 0.00 0.00 38.10 4.26
840 1034 0.238289 CTCAGCACAAAAATCGCGGT 59.762 50.000 6.13 0.00 0.00 5.68
1038 1262 2.046314 CCGGCCACCACTACAAGG 60.046 66.667 2.24 0.00 0.00 3.61
1330 1566 3.637273 GGTGACCAGCTTCCCGGT 61.637 66.667 0.00 0.00 38.56 5.28
2218 2484 1.747325 ATTGCTGTTGCCTTTGCCGT 61.747 50.000 0.00 0.00 38.71 5.68
2441 2712 2.696187 GAGTCATCTACCTTCTCCCCAC 59.304 54.545 0.00 0.00 0.00 4.61
2442 2713 2.687014 CGAGTCATCTACCTTCTCCCCA 60.687 54.545 0.00 0.00 0.00 4.96
2572 2850 2.160813 ACATTTAACATTGTCGTCGGCC 59.839 45.455 0.00 0.00 0.00 6.13
2605 2883 0.934496 CGTCCACGAAGAAACAGCAA 59.066 50.000 0.00 0.00 43.02 3.91
2627 2905 0.616679 AAATGGCCATGGAAGCAGCT 60.617 50.000 21.63 0.00 0.00 4.24
2628 2906 0.251073 AAAATGGCCATGGAAGCAGC 59.749 50.000 21.63 0.00 0.00 5.25
2629 2907 2.010043 GCAAAATGGCCATGGAAGCAG 61.010 52.381 21.63 6.60 0.00 4.24
2630 2908 0.036199 GCAAAATGGCCATGGAAGCA 60.036 50.000 21.63 0.00 0.00 3.91
2631 2909 0.251073 AGCAAAATGGCCATGGAAGC 59.749 50.000 21.63 20.20 0.00 3.86
2632 2910 1.551430 TCAGCAAAATGGCCATGGAAG 59.449 47.619 21.63 11.05 0.00 3.46
2633 2911 1.642112 TCAGCAAAATGGCCATGGAA 58.358 45.000 21.63 2.28 0.00 3.53
2634 2912 1.642112 TTCAGCAAAATGGCCATGGA 58.358 45.000 21.63 7.64 0.00 3.41
2635 2913 2.557317 GATTCAGCAAAATGGCCATGG 58.443 47.619 21.63 13.37 0.00 3.66
2636 2914 2.557317 GGATTCAGCAAAATGGCCATG 58.443 47.619 21.63 10.13 0.00 3.66
2637 2915 1.137479 CGGATTCAGCAAAATGGCCAT 59.863 47.619 14.09 14.09 0.00 4.40
2639 2917 0.179103 CCGGATTCAGCAAAATGGCC 60.179 55.000 0.00 0.00 0.00 5.36
2640 2918 0.807275 GCCGGATTCAGCAAAATGGC 60.807 55.000 5.05 0.00 0.00 4.40
2681 2975 2.284699 AACCTCCCTCCACCTCCG 60.285 66.667 0.00 0.00 0.00 4.63
2880 3193 2.261671 GGAGGCGACAAGAAGCGA 59.738 61.111 0.00 0.00 0.00 4.93
3083 3420 1.094073 GCTCATTCATGCGTCAGGCT 61.094 55.000 0.00 0.00 44.05 4.58
3091 3428 1.505477 GGGCTCGAGCTCATTCATGC 61.505 60.000 34.46 15.76 42.27 4.06
3117 3454 2.583593 GATCGCTGGAGTCCACGC 60.584 66.667 21.91 20.19 31.68 5.34
3118 3455 2.278206 CGATCGCTGGAGTCCACG 60.278 66.667 21.13 21.13 32.42 4.94
3119 3456 2.105128 CCGATCGCTGGAGTCCAC 59.895 66.667 8.12 4.72 0.00 4.02
3120 3457 3.838271 GCCGATCGCTGGAGTCCA 61.838 66.667 12.40 12.40 0.00 4.02
3121 3458 4.593864 GGCCGATCGCTGGAGTCC 62.594 72.222 10.32 0.73 37.74 3.85
3123 3460 3.532155 GAGGCCGATCGCTGGAGT 61.532 66.667 10.32 0.00 37.74 3.85
3124 3461 3.531207 TGAGGCCGATCGCTGGAG 61.531 66.667 10.32 0.00 37.74 3.86
3125 3462 3.838271 GTGAGGCCGATCGCTGGA 61.838 66.667 10.32 0.00 37.74 3.86
3126 3463 3.781770 GAGTGAGGCCGATCGCTGG 62.782 68.421 12.47 0.00 40.08 4.85
3128 3465 3.893763 CGAGTGAGGCCGATCGCT 61.894 66.667 10.32 7.74 42.62 4.93
3129 3466 3.200887 ATCGAGTGAGGCCGATCGC 62.201 63.158 10.32 5.23 41.05 4.58
3130 3467 3.034878 ATCGAGTGAGGCCGATCG 58.965 61.111 8.51 8.51 41.05 3.69
3132 3469 1.175983 GGAGATCGAGTGAGGCCGAT 61.176 60.000 0.00 0.00 46.67 4.18
3133 3470 1.824329 GGAGATCGAGTGAGGCCGA 60.824 63.158 0.00 0.00 39.25 5.54
3136 3473 1.739049 CAGGGAGATCGAGTGAGGC 59.261 63.158 0.00 0.00 0.00 4.70
3137 3474 1.039785 TGCAGGGAGATCGAGTGAGG 61.040 60.000 0.00 0.00 0.00 3.86
3138 3475 0.102120 GTGCAGGGAGATCGAGTGAG 59.898 60.000 0.00 0.00 0.00 3.51
3139 3476 0.611896 TGTGCAGGGAGATCGAGTGA 60.612 55.000 0.00 0.00 0.00 3.41
3140 3477 0.463204 ATGTGCAGGGAGATCGAGTG 59.537 55.000 0.00 0.00 0.00 3.51
3141 3478 0.749649 GATGTGCAGGGAGATCGAGT 59.250 55.000 0.00 0.00 0.00 4.18
3142 3479 0.318529 CGATGTGCAGGGAGATCGAG 60.319 60.000 13.67 0.00 40.06 4.04
3155 3492 1.807165 CTCGCCTGGTGACGATGTG 60.807 63.158 5.70 0.00 37.72 3.21
3245 3591 1.377333 CAGGCCGGAAGAAGGGTTC 60.377 63.158 5.05 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.