Multiple sequence alignment - TraesCS1D01G283500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G283500
chr1D
100.000
3296
0
0
1
3296
381312940
381316235
0.000000e+00
6087
1
TraesCS1D01G283500
chr1A
88.374
3432
161
85
4
3294
481931923
481935257
0.000000e+00
3908
2
TraesCS1D01G283500
chr1B
91.744
2786
89
44
602
3294
511451323
511454060
0.000000e+00
3740
3
TraesCS1D01G283500
chr1B
88.994
636
38
15
1
610
511450569
511451198
0.000000e+00
758
4
TraesCS1D01G283500
chr3B
85.238
989
132
12
1057
2038
617268771
617267790
0.000000e+00
1005
5
TraesCS1D01G283500
chr3A
84.524
1008
127
18
1057
2039
606830515
606829512
0.000000e+00
970
6
TraesCS1D01G283500
chr3D
84.337
996
136
14
1057
2039
463811404
463810416
0.000000e+00
957
7
TraesCS1D01G283500
chr4D
79.507
771
119
22
1275
2038
42238308
42237570
2.270000e-141
512
8
TraesCS1D01G283500
chr4D
100.000
62
0
0
1111
1172
228102956
228102895
7.470000e-22
115
9
TraesCS1D01G283500
chr4D
98.387
62
1
0
1111
1172
41791145
41791084
3.480000e-20
110
10
TraesCS1D01G283500
chr4D
98.387
62
1
0
1111
1172
41798805
41798744
3.480000e-20
110
11
TraesCS1D01G283500
chr4A
78.497
772
125
25
1275
2038
597458292
597457554
4.980000e-128
468
12
TraesCS1D01G283500
chr4A
78.165
774
131
19
1275
2041
597590707
597589965
3.000000e-125
459
13
TraesCS1D01G283500
chr4A
83.453
139
23
0
1275
1413
597617490
597617352
2.670000e-26
130
14
TraesCS1D01G283500
chr7D
100.000
61
0
0
1111
1171
334651341
334651281
2.690000e-21
113
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G283500
chr1D
381312940
381316235
3295
False
6087
6087
100.000
1
3296
1
chr1D.!!$F1
3295
1
TraesCS1D01G283500
chr1A
481931923
481935257
3334
False
3908
3908
88.374
4
3294
1
chr1A.!!$F1
3290
2
TraesCS1D01G283500
chr1B
511450569
511454060
3491
False
2249
3740
90.369
1
3294
2
chr1B.!!$F1
3293
3
TraesCS1D01G283500
chr3B
617267790
617268771
981
True
1005
1005
85.238
1057
2038
1
chr3B.!!$R1
981
4
TraesCS1D01G283500
chr3A
606829512
606830515
1003
True
970
970
84.524
1057
2039
1
chr3A.!!$R1
982
5
TraesCS1D01G283500
chr3D
463810416
463811404
988
True
957
957
84.337
1057
2039
1
chr3D.!!$R1
982
6
TraesCS1D01G283500
chr4D
42237570
42238308
738
True
512
512
79.507
1275
2038
1
chr4D.!!$R3
763
7
TraesCS1D01G283500
chr4A
597457554
597458292
738
True
468
468
78.497
1275
2038
1
chr4A.!!$R1
763
8
TraesCS1D01G283500
chr4A
597589965
597590707
742
True
459
459
78.165
1275
2041
1
chr4A.!!$R2
766
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
208
229
0.103937
GAGCTCTGGAGAACCGATGG
59.896
60.0
6.43
0.00
39.42
3.51
F
676
844
0.250295
GCTTGGTCACTGGCAGTGTA
60.250
55.0
38.27
25.65
46.03
2.90
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1038
1262
2.046314
CCGGCCACCACTACAAGG
60.046
66.667
2.24
0.0
0.0
3.61
R
2630
2908
0.036199
GCAAAATGGCCATGGAAGCA
60.036
50.000
21.63
0.0
0.0
3.91
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
29
30
9.276590
TGATCCAAATCATCACACTATACATTC
57.723
33.333
0.00
0.00
36.98
2.67
69
73
2.111041
GCATTATCTGCCGTTCTTGC
57.889
50.000
0.00
0.00
45.66
4.01
201
222
2.364317
CCCGGGAGCTCTGGAGAA
60.364
66.667
18.48
0.00
44.90
2.87
208
229
0.103937
GAGCTCTGGAGAACCGATGG
59.896
60.000
6.43
0.00
39.42
3.51
220
241
4.010349
AGAACCGATGGGAAACATTCTTC
58.990
43.478
0.00
0.00
40.72
2.87
254
279
5.657474
TGATCGGTTCCAATACAACTCTAC
58.343
41.667
0.00
0.00
0.00
2.59
262
287
5.891451
TCCAATACAACTCTACACGATCTG
58.109
41.667
0.00
0.00
0.00
2.90
265
290
6.638873
CCAATACAACTCTACACGATCTGATC
59.361
42.308
7.60
7.60
0.00
2.92
266
291
6.944234
ATACAACTCTACACGATCTGATCA
57.056
37.500
17.19
0.00
0.00
2.92
267
292
5.644977
ACAACTCTACACGATCTGATCAA
57.355
39.130
17.19
0.00
0.00
2.57
268
293
5.645624
ACAACTCTACACGATCTGATCAAG
58.354
41.667
17.19
10.80
0.00
3.02
269
294
5.184096
ACAACTCTACACGATCTGATCAAGT
59.816
40.000
17.19
15.41
0.00
3.16
270
295
5.906113
ACTCTACACGATCTGATCAAGTT
57.094
39.130
17.19
1.66
0.00
2.66
272
297
5.416013
ACTCTACACGATCTGATCAAGTTCA
59.584
40.000
17.19
4.79
0.00
3.18
285
315
8.807118
TCTGATCAAGTTCATAGTATATCACCC
58.193
37.037
0.00
0.00
0.00
4.61
406
436
3.687698
TCATTTTACGGCAAAGCTACTCC
59.312
43.478
0.00
0.00
0.00
3.85
407
437
3.412237
TTTTACGGCAAAGCTACTCCT
57.588
42.857
0.00
0.00
0.00
3.69
408
438
2.667473
TTACGGCAAAGCTACTCCTC
57.333
50.000
0.00
0.00
0.00
3.71
409
439
1.848652
TACGGCAAAGCTACTCCTCT
58.151
50.000
0.00
0.00
0.00
3.69
411
441
0.532573
CGGCAAAGCTACTCCTCTCA
59.467
55.000
0.00
0.00
0.00
3.27
413
443
2.362397
CGGCAAAGCTACTCCTCTCATA
59.638
50.000
0.00
0.00
0.00
2.15
415
445
3.386402
GGCAAAGCTACTCCTCTCATACT
59.614
47.826
0.00
0.00
0.00
2.12
443
474
4.688879
TGTTTTTATCCACGCAGAGTACTG
59.311
41.667
0.00
0.00
45.91
2.74
446
478
1.257750
ATCCACGCAGAGTACTGGCA
61.258
55.000
0.00
0.00
43.62
4.92
451
483
0.458543
CGCAGAGTACTGGCATCGTT
60.459
55.000
0.00
0.00
43.62
3.85
549
584
0.815213
GCACAGAGCCACAACAGTGA
60.815
55.000
0.00
0.00
37.23
3.41
564
599
1.472480
CAGTGAGCAATTAAACCCGGG
59.528
52.381
22.25
22.25
0.00
5.73
565
600
1.074889
AGTGAGCAATTAAACCCGGGT
59.925
47.619
24.16
24.16
0.00
5.28
566
601
1.471287
GTGAGCAATTAAACCCGGGTC
59.529
52.381
30.40
12.96
0.00
4.46
567
602
0.730840
GAGCAATTAAACCCGGGTCG
59.269
55.000
30.40
12.44
0.00
4.79
587
622
4.415150
CCGGGCCAGCATGACAGT
62.415
66.667
4.39
0.00
39.69
3.55
591
626
2.753043
GCCAGCATGACAGTGGGG
60.753
66.667
0.00
0.00
39.69
4.96
671
839
2.431683
GGAGCTTGGTCACTGGCA
59.568
61.111
2.24
0.00
0.00
4.92
673
841
1.072159
GAGCTTGGTCACTGGCAGT
59.928
57.895
15.88
15.88
0.00
4.40
675
843
1.526917
GCTTGGTCACTGGCAGTGT
60.527
57.895
38.27
10.61
46.03
3.55
676
844
0.250295
GCTTGGTCACTGGCAGTGTA
60.250
55.000
38.27
25.65
46.03
2.90
677
845
1.800805
CTTGGTCACTGGCAGTGTAG
58.199
55.000
38.27
27.47
46.03
2.74
678
846
1.070758
CTTGGTCACTGGCAGTGTAGT
59.929
52.381
38.27
9.04
46.03
2.73
679
847
2.003937
TGGTCACTGGCAGTGTAGTA
57.996
50.000
38.27
22.29
46.03
1.82
680
848
1.893137
TGGTCACTGGCAGTGTAGTAG
59.107
52.381
38.27
18.85
46.03
2.57
681
849
1.893801
GGTCACTGGCAGTGTAGTAGT
59.106
52.381
38.27
6.73
46.03
2.73
825
1016
2.282180
CAACCAGACCCAACCCCG
60.282
66.667
0.00
0.00
0.00
5.73
840
1034
1.208535
ACCCCGCAGATGTTTAATCGA
59.791
47.619
0.00
0.00
0.00
3.59
1044
1268
2.642254
CCGGCTGGTCGTCCTTGTA
61.642
63.158
2.29
0.00
34.23
2.41
2019
2285
2.435059
GCCGTCTCCAAGGTGCTC
60.435
66.667
0.00
0.00
0.00
4.26
2255
2521
1.502690
ATTGGGCGGTGGTGTATAGA
58.497
50.000
0.00
0.00
0.00
1.98
2394
2661
6.959639
ATTGTTTCTTCTTTGTTGCTCCTA
57.040
33.333
0.00
0.00
0.00
2.94
2441
2712
5.269505
TGTACACAATGGGTTTGAAAAGG
57.730
39.130
0.00
0.00
38.76
3.11
2442
2713
4.712337
TGTACACAATGGGTTTGAAAAGGT
59.288
37.500
0.00
0.00
38.76
3.50
2513
2791
0.947244
CAGCGTTCTTTTCACTGCCT
59.053
50.000
0.00
0.00
0.00
4.75
2516
2794
0.662619
CGTTCTTTTCACTGCCTGCA
59.337
50.000
0.00
0.00
0.00
4.41
2572
2850
1.058695
GTAAAGAATCACACGCGACCG
59.941
52.381
15.93
2.72
41.14
4.79
2627
2905
0.934496
CTGTTTCTTCGTGGACGCAA
59.066
50.000
0.00
0.00
39.60
4.85
2629
2907
0.384353
GTTTCTTCGTGGACGCAAGC
60.384
55.000
0.00
0.00
45.62
4.01
2630
2908
0.531974
TTTCTTCGTGGACGCAAGCT
60.532
50.000
0.00
0.00
45.62
3.74
2631
2909
1.221466
TTCTTCGTGGACGCAAGCTG
61.221
55.000
0.00
0.00
45.62
4.24
2632
2910
3.300667
CTTCGTGGACGCAAGCTGC
62.301
63.158
0.00
0.00
45.62
5.25
2633
2911
3.807631
TTCGTGGACGCAAGCTGCT
62.808
57.895
0.00
0.00
42.25
4.24
2634
2912
3.349006
CGTGGACGCAAGCTGCTT
61.349
61.111
9.53
9.53
42.25
3.91
2635
2913
2.558313
GTGGACGCAAGCTGCTTC
59.442
61.111
12.82
6.83
42.25
3.86
2639
2917
1.136147
GACGCAAGCTGCTTCCATG
59.864
57.895
12.82
3.06
42.25
3.66
2640
2918
2.262471
GACGCAAGCTGCTTCCATGG
62.262
60.000
12.82
4.97
42.25
3.66
2656
2944
2.557317
CATGGCCATTTTGCTGAATCC
58.443
47.619
17.92
0.00
0.00
3.01
2681
2975
1.002011
GGAAGTGGGGAAGTGGAGC
60.002
63.158
0.00
0.00
0.00
4.70
2691
2985
2.232298
GAAGTGGAGCGGAGGTGGAG
62.232
65.000
0.00
0.00
39.88
3.86
2696
2990
4.787280
AGCGGAGGTGGAGGGAGG
62.787
72.222
0.00
0.00
36.17
4.30
2698
2992
2.284699
CGGAGGTGGAGGGAGGTT
60.285
66.667
0.00
0.00
0.00
3.50
2942
3279
1.279840
GACACGACTTGCTTGTGGC
59.720
57.895
0.00
0.00
38.50
5.01
3091
3428
2.752238
ACCTCCTCGAGCCTGACG
60.752
66.667
6.99
0.00
0.00
4.35
3117
3454
3.073735
AGCTCGAGCCCACCTCTG
61.074
66.667
32.94
0.00
43.38
3.35
3118
3455
4.828925
GCTCGAGCCCACCTCTGC
62.829
72.222
27.22
0.00
38.49
4.26
3119
3456
4.504916
CTCGAGCCCACCTCTGCG
62.505
72.222
0.00
0.00
38.49
5.18
3128
3465
2.203640
ACCTCTGCGTGGACTCCA
60.204
61.111
0.00
0.00
0.00
3.86
3129
3466
2.279069
ACCTCTGCGTGGACTCCAG
61.279
63.158
0.00
0.00
32.34
3.86
3130
3467
2.125753
CTCTGCGTGGACTCCAGC
60.126
66.667
0.00
5.38
32.34
4.85
3131
3468
3.978723
CTCTGCGTGGACTCCAGCG
62.979
68.421
0.00
6.83
32.34
5.18
3132
3469
4.056125
CTGCGTGGACTCCAGCGA
62.056
66.667
18.56
7.41
32.34
4.93
3133
3470
3.362399
CTGCGTGGACTCCAGCGAT
62.362
63.158
18.56
0.00
32.34
4.58
3136
3473
2.105128
GTGGACTCCAGCGATCGG
59.895
66.667
18.30
1.63
32.34
4.18
3137
3474
3.838271
TGGACTCCAGCGATCGGC
61.838
66.667
18.30
9.32
44.05
5.54
3138
3475
4.593864
GGACTCCAGCGATCGGCC
62.594
72.222
18.30
0.22
45.17
6.13
3139
3476
3.532155
GACTCCAGCGATCGGCCT
61.532
66.667
18.30
3.01
45.17
5.19
3140
3477
3.492311
GACTCCAGCGATCGGCCTC
62.492
68.421
18.30
0.00
45.17
4.70
3141
3478
3.531207
CTCCAGCGATCGGCCTCA
61.531
66.667
18.30
0.00
45.17
3.86
3142
3479
3.781770
CTCCAGCGATCGGCCTCAC
62.782
68.421
18.30
0.00
45.17
3.51
3155
3492
1.739049
CCTCACTCGATCTCCCTGC
59.261
63.158
0.00
0.00
0.00
4.85
3245
3591
2.983592
GGCAACAACGGGACTGGG
60.984
66.667
0.00
0.00
0.00
4.45
3294
3640
0.320160
GGTACCACGGCTTCGAGTTT
60.320
55.000
7.15
0.00
37.63
2.66
3295
3641
0.788391
GTACCACGGCTTCGAGTTTG
59.212
55.000
0.00
0.00
37.63
2.93
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
29
30
6.862944
TGCGTGTTTAGAAAAGAAAACAAG
57.137
33.333
8.76
8.76
44.64
3.16
69
73
0.317770
AATGCACCAACGCAGAAACG
60.318
50.000
0.00
0.00
46.99
3.60
135
150
9.563748
AATCCTCTATGTAGTAAGTACTGACTC
57.436
37.037
16.66
9.10
37.10
3.36
137
152
9.953697
CAAATCCTCTATGTAGTAAGTACTGAC
57.046
37.037
1.60
1.60
37.10
3.51
193
214
1.278127
GTTTCCCATCGGTTCTCCAGA
59.722
52.381
0.00
0.00
0.00
3.86
194
215
1.003118
TGTTTCCCATCGGTTCTCCAG
59.997
52.381
0.00
0.00
0.00
3.86
201
222
2.723273
GGAAGAATGTTTCCCATCGGT
58.277
47.619
0.00
0.00
40.64
4.69
208
229
2.159379
GCGTGATGGGAAGAATGTTTCC
60.159
50.000
0.80
0.80
44.82
3.13
262
287
8.140112
AGGGGTGATATACTATGAACTTGATC
57.860
38.462
0.00
0.00
0.00
2.92
265
290
6.390721
CGAGGGGTGATATACTATGAACTTG
58.609
44.000
0.00
0.00
0.00
3.16
266
291
5.047235
GCGAGGGGTGATATACTATGAACTT
60.047
44.000
0.00
0.00
0.00
2.66
267
292
4.463186
GCGAGGGGTGATATACTATGAACT
59.537
45.833
0.00
0.00
0.00
3.01
268
293
4.463186
AGCGAGGGGTGATATACTATGAAC
59.537
45.833
0.00
0.00
0.00
3.18
269
294
4.673968
AGCGAGGGGTGATATACTATGAA
58.326
43.478
0.00
0.00
0.00
2.57
270
295
4.317530
AGCGAGGGGTGATATACTATGA
57.682
45.455
0.00
0.00
0.00
2.15
272
297
3.195825
GCAAGCGAGGGGTGATATACTAT
59.804
47.826
0.00
0.00
0.00
2.12
285
315
1.727022
CAAAAGCACGCAAGCGAGG
60.727
57.895
22.30
13.30
42.83
4.63
407
437
9.146984
CGTGGATAAAAACAGTTAAGTATGAGA
57.853
33.333
0.00
0.00
0.00
3.27
408
438
7.903431
GCGTGGATAAAAACAGTTAAGTATGAG
59.097
37.037
0.00
0.00
0.00
2.90
409
439
7.388224
TGCGTGGATAAAAACAGTTAAGTATGA
59.612
33.333
0.00
0.00
0.00
2.15
411
441
7.604927
TCTGCGTGGATAAAAACAGTTAAGTAT
59.395
33.333
0.00
0.00
0.00
2.12
413
443
5.761234
TCTGCGTGGATAAAAACAGTTAAGT
59.239
36.000
0.00
0.00
0.00
2.24
415
445
5.761234
ACTCTGCGTGGATAAAAACAGTTAA
59.239
36.000
0.00
0.00
0.00
2.01
432
463
0.458543
AACGATGCCAGTACTCTGCG
60.459
55.000
8.87
4.56
40.09
5.18
443
474
3.466836
TGAGATAACATGGAACGATGCC
58.533
45.455
0.00
0.00
0.00
4.40
446
478
4.993584
GCTGATGAGATAACATGGAACGAT
59.006
41.667
0.00
0.00
0.00
3.73
451
483
3.181451
GGGTGCTGATGAGATAACATGGA
60.181
47.826
0.00
0.00
0.00
3.41
549
584
0.678684
CCGACCCGGGTTTAATTGCT
60.679
55.000
30.89
0.00
44.15
3.91
671
839
2.634600
CAGCGAGGAGACTACTACACT
58.365
52.381
0.00
0.00
44.43
3.55
673
841
1.558294
TCCAGCGAGGAGACTACTACA
59.442
52.381
0.00
0.00
43.07
2.74
674
842
2.328819
TCCAGCGAGGAGACTACTAC
57.671
55.000
0.00
0.00
43.07
2.73
773
964
2.101415
GGAAGTGCAAAGCCTTTGTTCT
59.899
45.455
17.88
13.06
42.56
3.01
825
1016
1.332028
CGCGGTCGATTAAACATCTGC
60.332
52.381
0.00
0.00
38.10
4.26
840
1034
0.238289
CTCAGCACAAAAATCGCGGT
59.762
50.000
6.13
0.00
0.00
5.68
1038
1262
2.046314
CCGGCCACCACTACAAGG
60.046
66.667
2.24
0.00
0.00
3.61
1330
1566
3.637273
GGTGACCAGCTTCCCGGT
61.637
66.667
0.00
0.00
38.56
5.28
2218
2484
1.747325
ATTGCTGTTGCCTTTGCCGT
61.747
50.000
0.00
0.00
38.71
5.68
2441
2712
2.696187
GAGTCATCTACCTTCTCCCCAC
59.304
54.545
0.00
0.00
0.00
4.61
2442
2713
2.687014
CGAGTCATCTACCTTCTCCCCA
60.687
54.545
0.00
0.00
0.00
4.96
2572
2850
2.160813
ACATTTAACATTGTCGTCGGCC
59.839
45.455
0.00
0.00
0.00
6.13
2605
2883
0.934496
CGTCCACGAAGAAACAGCAA
59.066
50.000
0.00
0.00
43.02
3.91
2627
2905
0.616679
AAATGGCCATGGAAGCAGCT
60.617
50.000
21.63
0.00
0.00
4.24
2628
2906
0.251073
AAAATGGCCATGGAAGCAGC
59.749
50.000
21.63
0.00
0.00
5.25
2629
2907
2.010043
GCAAAATGGCCATGGAAGCAG
61.010
52.381
21.63
6.60
0.00
4.24
2630
2908
0.036199
GCAAAATGGCCATGGAAGCA
60.036
50.000
21.63
0.00
0.00
3.91
2631
2909
0.251073
AGCAAAATGGCCATGGAAGC
59.749
50.000
21.63
20.20
0.00
3.86
2632
2910
1.551430
TCAGCAAAATGGCCATGGAAG
59.449
47.619
21.63
11.05
0.00
3.46
2633
2911
1.642112
TCAGCAAAATGGCCATGGAA
58.358
45.000
21.63
2.28
0.00
3.53
2634
2912
1.642112
TTCAGCAAAATGGCCATGGA
58.358
45.000
21.63
7.64
0.00
3.41
2635
2913
2.557317
GATTCAGCAAAATGGCCATGG
58.443
47.619
21.63
13.37
0.00
3.66
2636
2914
2.557317
GGATTCAGCAAAATGGCCATG
58.443
47.619
21.63
10.13
0.00
3.66
2637
2915
1.137479
CGGATTCAGCAAAATGGCCAT
59.863
47.619
14.09
14.09
0.00
4.40
2639
2917
0.179103
CCGGATTCAGCAAAATGGCC
60.179
55.000
0.00
0.00
0.00
5.36
2640
2918
0.807275
GCCGGATTCAGCAAAATGGC
60.807
55.000
5.05
0.00
0.00
4.40
2681
2975
2.284699
AACCTCCCTCCACCTCCG
60.285
66.667
0.00
0.00
0.00
4.63
2880
3193
2.261671
GGAGGCGACAAGAAGCGA
59.738
61.111
0.00
0.00
0.00
4.93
3083
3420
1.094073
GCTCATTCATGCGTCAGGCT
61.094
55.000
0.00
0.00
44.05
4.58
3091
3428
1.505477
GGGCTCGAGCTCATTCATGC
61.505
60.000
34.46
15.76
42.27
4.06
3117
3454
2.583593
GATCGCTGGAGTCCACGC
60.584
66.667
21.91
20.19
31.68
5.34
3118
3455
2.278206
CGATCGCTGGAGTCCACG
60.278
66.667
21.13
21.13
32.42
4.94
3119
3456
2.105128
CCGATCGCTGGAGTCCAC
59.895
66.667
8.12
4.72
0.00
4.02
3120
3457
3.838271
GCCGATCGCTGGAGTCCA
61.838
66.667
12.40
12.40
0.00
4.02
3121
3458
4.593864
GGCCGATCGCTGGAGTCC
62.594
72.222
10.32
0.73
37.74
3.85
3123
3460
3.532155
GAGGCCGATCGCTGGAGT
61.532
66.667
10.32
0.00
37.74
3.85
3124
3461
3.531207
TGAGGCCGATCGCTGGAG
61.531
66.667
10.32
0.00
37.74
3.86
3125
3462
3.838271
GTGAGGCCGATCGCTGGA
61.838
66.667
10.32
0.00
37.74
3.86
3126
3463
3.781770
GAGTGAGGCCGATCGCTGG
62.782
68.421
12.47
0.00
40.08
4.85
3128
3465
3.893763
CGAGTGAGGCCGATCGCT
61.894
66.667
10.32
7.74
42.62
4.93
3129
3466
3.200887
ATCGAGTGAGGCCGATCGC
62.201
63.158
10.32
5.23
41.05
4.58
3130
3467
3.034878
ATCGAGTGAGGCCGATCG
58.965
61.111
8.51
8.51
41.05
3.69
3132
3469
1.175983
GGAGATCGAGTGAGGCCGAT
61.176
60.000
0.00
0.00
46.67
4.18
3133
3470
1.824329
GGAGATCGAGTGAGGCCGA
60.824
63.158
0.00
0.00
39.25
5.54
3136
3473
1.739049
CAGGGAGATCGAGTGAGGC
59.261
63.158
0.00
0.00
0.00
4.70
3137
3474
1.039785
TGCAGGGAGATCGAGTGAGG
61.040
60.000
0.00
0.00
0.00
3.86
3138
3475
0.102120
GTGCAGGGAGATCGAGTGAG
59.898
60.000
0.00
0.00
0.00
3.51
3139
3476
0.611896
TGTGCAGGGAGATCGAGTGA
60.612
55.000
0.00
0.00
0.00
3.41
3140
3477
0.463204
ATGTGCAGGGAGATCGAGTG
59.537
55.000
0.00
0.00
0.00
3.51
3141
3478
0.749649
GATGTGCAGGGAGATCGAGT
59.250
55.000
0.00
0.00
0.00
4.18
3142
3479
0.318529
CGATGTGCAGGGAGATCGAG
60.319
60.000
13.67
0.00
40.06
4.04
3155
3492
1.807165
CTCGCCTGGTGACGATGTG
60.807
63.158
5.70
0.00
37.72
3.21
3245
3591
1.377333
CAGGCCGGAAGAAGGGTTC
60.377
63.158
5.05
0.00
0.00
3.62
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.