Multiple sequence alignment - TraesCS1D01G283400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G283400 chr1D 100.000 5021 0 0 3945 8965 381307532 381312552 0.000000e+00 9273.0
1 TraesCS1D01G283400 chr1D 100.000 3550 0 0 1 3550 381303588 381307137 0.000000e+00 6556.0
2 TraesCS1D01G283400 chr1D 86.136 339 37 8 4650 4984 47331086 47330754 3.080000e-94 357.0
3 TraesCS1D01G283400 chr1D 93.814 97 6 0 3405 3501 313208276 313208372 7.250000e-31 147.0
4 TraesCS1D01G283400 chr1D 93.878 98 4 2 3405 3501 381307088 381306992 7.250000e-31 147.0
5 TraesCS1D01G283400 chr1D 93.333 90 6 0 4996 5085 316618832 316618921 5.650000e-27 134.0
6 TraesCS1D01G283400 chr1D 94.915 59 3 0 402 460 476713243 476713301 9.580000e-15 93.5
7 TraesCS1D01G283400 chr1A 93.804 3099 95 37 520 3550 481921497 481924566 0.000000e+00 4569.0
8 TraesCS1D01G283400 chr1A 93.114 2614 88 35 6222 8780 481928404 481930980 0.000000e+00 3746.0
9 TraesCS1D01G283400 chr1A 94.705 982 48 3 3945 4925 481924835 481925813 0.000000e+00 1522.0
10 TraesCS1D01G283400 chr1A 94.309 738 27 8 5474 6197 481927322 481928058 0.000000e+00 1116.0
11 TraesCS1D01G283400 chr1A 92.366 393 20 5 4846 5238 481925768 481926150 1.320000e-152 551.0
12 TraesCS1D01G283400 chr1A 96.694 242 8 0 5229 5470 481926561 481926802 3.900000e-108 403.0
13 TraesCS1D01G283400 chr1A 86.136 339 36 8 4650 4984 47213009 47212678 1.110000e-93 355.0
14 TraesCS1D01G283400 chr1A 91.216 148 11 2 8811 8957 481931416 481931562 5.490000e-47 200.0
15 TraesCS1D01G283400 chr1A 94.898 98 3 2 3405 3501 481924517 481924421 1.560000e-32 152.0
16 TraesCS1D01G283400 chr1A 90.196 102 6 1 4995 5092 397737840 397737941 7.300000e-26 130.0
17 TraesCS1D01G283400 chr1A 88.073 109 13 0 138 246 481921304 481921412 7.300000e-26 130.0
18 TraesCS1D01G283400 chr1B 93.514 2544 93 24 6220 8732 511447241 511449743 0.000000e+00 3718.0
19 TraesCS1D01G283400 chr1B 96.244 2183 76 2 3945 6127 511444761 511446937 0.000000e+00 3572.0
20 TraesCS1D01G283400 chr1B 93.676 2119 73 20 571 2666 511441691 511443771 0.000000e+00 3114.0
21 TraesCS1D01G283400 chr1B 97.026 908 16 5 2652 3550 511443791 511444696 0.000000e+00 1517.0
22 TraesCS1D01G283400 chr1B 86.391 338 39 5 4650 4984 67055288 67054955 6.620000e-96 363.0
23 TraesCS1D01G283400 chr1B 89.143 175 13 2 8779 8947 511449976 511450150 7.050000e-51 213.0
24 TraesCS1D01G283400 chr1B 93.878 98 4 2 3405 3501 511444647 511444551 7.250000e-31 147.0
25 TraesCS1D01G283400 chr1B 95.238 63 0 3 8721 8780 511449890 511449952 7.410000e-16 97.1
26 TraesCS1D01G283400 chr1B 94.545 55 3 0 402 456 552952387 552952441 1.600000e-12 86.1
27 TraesCS1D01G283400 chr7A 87.220 313 32 7 4675 4985 692498623 692498317 5.150000e-92 350.0
28 TraesCS1D01G283400 chr7A 90.625 96 5 1 5001 5092 692371746 692371841 3.400000e-24 124.0
29 TraesCS1D01G283400 chr7A 90.625 96 5 1 5001 5092 692395592 692395687 3.400000e-24 124.0
30 TraesCS1D01G283400 chr3A 85.886 333 41 4 4650 4982 40521 40195 5.150000e-92 350.0
31 TraesCS1D01G283400 chr3A 85.285 333 43 4 4650 4982 63438 63112 1.110000e-88 339.0
32 TraesCS1D01G283400 chr3A 82.667 225 36 3 4328 4550 607058039 607057816 7.100000e-46 196.0
33 TraesCS1D01G283400 chr3A 83.511 188 27 4 6898 7083 607057404 607057219 1.200000e-38 172.0
34 TraesCS1D01G283400 chr3A 94.737 76 4 0 2814 2889 607059265 607059190 1.580000e-22 119.0
35 TraesCS1D01G283400 chr5A 83.929 336 47 4 4650 4984 653942880 653942551 1.880000e-81 315.0
36 TraesCS1D01G283400 chr5A 94.444 54 3 0 402 455 374665696 374665643 5.770000e-12 84.2
37 TraesCS1D01G283400 chr3D 82.589 224 38 1 4328 4550 464042965 464042742 7.100000e-46 196.0
38 TraesCS1D01G283400 chr3D 81.683 202 31 6 6898 7097 464042318 464042121 7.200000e-36 163.0
39 TraesCS1D01G283400 chr3D 92.857 84 5 1 2814 2897 464043940 464043858 4.400000e-23 121.0
40 TraesCS1D01G283400 chr3B 82.589 224 38 1 4328 4550 617410757 617410534 7.100000e-46 196.0
41 TraesCS1D01G283400 chr3B 82.468 154 18 7 5224 5372 305527654 305527803 9.450000e-25 126.0
42 TraesCS1D01G283400 chr3B 96.226 53 2 0 404 456 107640645 107640593 4.460000e-13 87.9
43 TraesCS1D01G283400 chr3B 92.982 57 4 0 404 460 670028679 670028623 5.770000e-12 84.2
44 TraesCS1D01G283400 chr4D 95.000 100 5 0 3405 3504 210457768 210457867 3.350000e-34 158.0
45 TraesCS1D01G283400 chr4D 94.737 57 3 0 402 458 503564402 503564458 1.240000e-13 89.8
46 TraesCS1D01G283400 chr4B 93.000 100 7 0 3405 3504 253703925 253704024 7.250000e-31 147.0
47 TraesCS1D01G283400 chr4B 91.304 92 4 3 4996 5083 71586830 71586921 1.220000e-23 122.0
48 TraesCS1D01G283400 chr4A 93.000 100 7 0 3405 3504 300455737 300455638 7.250000e-31 147.0
49 TraesCS1D01G283400 chr5D 80.198 202 26 6 255 456 379225753 379225940 1.210000e-28 139.0
50 TraesCS1D01G283400 chr5D 89.109 101 7 2 4996 5092 52281159 52281059 1.220000e-23 122.0
51 TraesCS1D01G283400 chr5D 82.143 112 16 4 5225 5334 37647702 37647593 9.580000e-15 93.5
52 TraesCS1D01G283400 chr2B 87.619 105 9 3 4993 5093 216462806 216462910 1.580000e-22 119.0
53 TraesCS1D01G283400 chr2B 96.296 54 2 0 402 455 760299978 760300031 1.240000e-13 89.8
54 TraesCS1D01G283400 chr2B 94.545 55 3 0 402 456 495146617 495146563 1.600000e-12 86.1
55 TraesCS1D01G283400 chr2D 81.720 93 14 3 5244 5334 106628779 106628688 3.470000e-09 75.0
56 TraesCS1D01G283400 chr6B 85.938 64 9 0 5224 5287 96881432 96881495 1.620000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G283400 chr1D 381303588 381312552 8964 False 7914.500000 9273 100.000000 1 8965 2 chr1D.!!$F4 8964
1 TraesCS1D01G283400 chr1A 481921304 481931562 10258 False 1529.625000 4569 93.035125 138 8957 8 chr1A.!!$F2 8819
2 TraesCS1D01G283400 chr1B 511441691 511450150 8459 False 2038.516667 3718 94.140167 571 8947 6 chr1B.!!$F2 8376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.040067 GTGGCAGCAGCTAACAACAC 60.040 55.000 0.00 0.0 41.70 3.32 F
246 247 0.171455 AAAGTTTCACGCGGTTGCAA 59.829 45.000 12.47 0.0 42.97 4.08 F
694 718 0.178813 TTTCCTCCCCTTAGGCCCTT 60.179 55.000 0.00 0.0 36.51 3.95 F
697 721 0.259065 CCTCCCCTTAGGCCCTTTTC 59.741 60.000 0.00 0.0 34.51 2.29 F
2376 2485 1.065053 CCACATGTCGATAAACCCCCA 60.065 52.381 0.00 0.0 0.00 4.96 F
2590 2700 3.181458 TGAGTTCCCTGCGAAAACTTACT 60.181 43.478 0.00 0.0 33.54 2.24 F
4351 4504 0.885196 TTGGGTACAGCAAATTCCGC 59.115 50.000 0.00 0.0 0.00 5.54 F
5087 5276 1.279271 AGCGTCAACTAATTCCAGCCT 59.721 47.619 0.00 0.0 0.00 4.58 F
6204 7343 0.105778 TGCATTCACACAGTCGGTCA 59.894 50.000 0.00 0.0 0.00 4.02 F
6215 7354 0.546598 AGTCGGTCATGATTTCCCCC 59.453 55.000 0.00 0.0 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1646 0.467290 TCAACCAAGCCAACCCACTC 60.467 55.000 0.00 0.00 0.00 3.51 R
1887 1993 1.202348 GCAAACCAAGGTGCACTATCC 59.798 52.381 17.98 0.00 40.58 2.59 R
2273 2379 2.561569 ACAAACGGCAGGTATAGATGC 58.438 47.619 1.23 1.23 41.80 3.91 R
2590 2700 4.761227 TCAGAATGTTTTCATGCAGTGCTA 59.239 37.500 17.60 3.01 40.79 3.49 R
4021 4174 1.557832 CCCTTTTCGGAGTGATACCCA 59.442 52.381 0.00 0.00 33.16 4.51 R
4416 4569 3.498397 ACGCTCCATTATAAAATCAGGCG 59.502 43.478 14.48 14.48 38.21 5.52 R
5420 6029 0.329596 GGTGAAGAGATGCCCCAACT 59.670 55.000 0.00 0.00 0.00 3.16 R
6559 8021 2.325583 AACTTCAGGAACAGTCGCAA 57.674 45.000 0.00 0.00 0.00 4.85 R
7171 8637 0.035056 AACTGGGCAGAGCATGGTAC 60.035 55.000 0.00 0.00 0.00 3.34 R
8111 9592 0.106819 ATCTGAGGCATCCCTGTTGC 60.107 55.000 0.00 0.00 43.12 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.057627 TGCTATGCTACTTAGAACGACTAC 57.942 41.667 0.00 0.00 0.00 2.73
24 25 5.587443 TGCTATGCTACTTAGAACGACTACA 59.413 40.000 0.00 0.00 0.00 2.74
25 26 6.094464 TGCTATGCTACTTAGAACGACTACAA 59.906 38.462 0.00 0.00 0.00 2.41
26 27 6.414402 GCTATGCTACTTAGAACGACTACAAC 59.586 42.308 0.00 0.00 0.00 3.32
27 28 5.694231 TGCTACTTAGAACGACTACAACA 57.306 39.130 0.00 0.00 0.00 3.33
28 29 5.455392 TGCTACTTAGAACGACTACAACAC 58.545 41.667 0.00 0.00 0.00 3.32
29 30 4.552660 GCTACTTAGAACGACTACAACACG 59.447 45.833 0.00 0.00 0.00 4.49
30 31 3.893720 ACTTAGAACGACTACAACACGG 58.106 45.455 0.00 0.00 0.00 4.94
31 32 2.995466 TAGAACGACTACAACACGGG 57.005 50.000 0.00 0.00 0.00 5.28
32 33 0.319297 AGAACGACTACAACACGGGC 60.319 55.000 0.00 0.00 0.00 6.13
33 34 1.611592 GAACGACTACAACACGGGCG 61.612 60.000 0.00 0.00 0.00 6.13
34 35 2.074230 AACGACTACAACACGGGCGA 62.074 55.000 0.00 0.00 0.00 5.54
35 36 1.800315 CGACTACAACACGGGCGAG 60.800 63.158 0.00 0.00 0.00 5.03
36 37 1.445582 GACTACAACACGGGCGAGG 60.446 63.158 0.00 0.00 0.00 4.63
37 38 2.813908 CTACAACACGGGCGAGGC 60.814 66.667 0.00 0.00 0.00 4.70
38 39 3.583276 CTACAACACGGGCGAGGCA 62.583 63.158 0.00 0.00 0.00 4.75
39 40 3.583276 TACAACACGGGCGAGGCAG 62.583 63.158 0.00 0.00 0.00 4.85
66 67 3.188786 CAGACGGCAGCGGCTAAC 61.189 66.667 9.17 0.00 40.87 2.34
67 68 3.691342 AGACGGCAGCGGCTAACA 61.691 61.111 9.17 0.00 40.87 2.41
68 69 3.188786 GACGGCAGCGGCTAACAG 61.189 66.667 9.17 1.20 40.87 3.16
71 72 3.804193 GGCAGCGGCTAACAGCAC 61.804 66.667 9.17 0.00 44.75 4.40
72 73 4.152625 GCAGCGGCTAACAGCACG 62.153 66.667 0.26 3.02 44.75 5.34
73 74 3.490759 CAGCGGCTAACAGCACGG 61.491 66.667 0.26 0.00 44.75 4.94
74 75 4.760047 AGCGGCTAACAGCACGGG 62.760 66.667 0.00 0.00 44.75 5.28
77 78 4.752879 GGCTAACAGCACGGGCGA 62.753 66.667 2.77 0.00 44.75 5.54
103 104 3.127533 CGGGTGGCAGCAGCTAAC 61.128 66.667 19.48 0.00 41.70 2.34
104 105 2.034066 GGGTGGCAGCAGCTAACA 59.966 61.111 19.48 0.00 41.33 2.41
105 106 1.603455 GGGTGGCAGCAGCTAACAA 60.603 57.895 19.48 0.00 41.33 2.83
106 107 1.581447 GGTGGCAGCAGCTAACAAC 59.419 57.895 12.58 0.00 39.02 3.32
107 108 1.172180 GGTGGCAGCAGCTAACAACA 61.172 55.000 12.58 0.00 39.02 3.33
108 109 0.040067 GTGGCAGCAGCTAACAACAC 60.040 55.000 0.00 0.00 41.70 3.32
109 110 1.207593 GGCAGCAGCTAACAACACG 59.792 57.895 0.00 0.00 41.70 4.49
110 111 1.207593 GCAGCAGCTAACAACACGG 59.792 57.895 0.00 0.00 37.91 4.94
111 112 1.207593 CAGCAGCTAACAACACGGC 59.792 57.895 0.00 0.00 0.00 5.68
112 113 1.966451 AGCAGCTAACAACACGGCC 60.966 57.895 0.00 0.00 0.00 6.13
113 114 2.860293 CAGCTAACAACACGGCCG 59.140 61.111 26.86 26.86 0.00 6.13
114 115 1.666553 CAGCTAACAACACGGCCGA 60.667 57.895 35.90 6.13 0.00 5.54
115 116 1.374252 AGCTAACAACACGGCCGAG 60.374 57.895 35.90 28.39 0.00 4.63
116 117 2.388232 GCTAACAACACGGCCGAGG 61.388 63.158 35.90 25.30 0.00 4.63
117 118 2.357760 TAACAACACGGCCGAGGC 60.358 61.111 35.90 5.37 41.06 4.70
118 119 3.166490 TAACAACACGGCCGAGGCA 62.166 57.895 35.90 6.79 44.11 4.75
119 120 4.988598 ACAACACGGCCGAGGCAG 62.989 66.667 35.90 19.92 44.11 4.85
126 127 4.221422 GGCCGAGGCAGCGACATA 62.221 66.667 16.65 0.00 44.11 2.29
127 128 2.962253 GCCGAGGCAGCGACATAC 60.962 66.667 9.58 0.00 41.49 2.39
128 129 2.655364 CCGAGGCAGCGACATACG 60.655 66.667 1.22 0.00 45.66 3.06
129 130 2.655364 CGAGGCAGCGACATACGG 60.655 66.667 0.00 0.00 42.83 4.02
130 131 2.962253 GAGGCAGCGACATACGGC 60.962 66.667 0.00 0.00 42.83 5.68
131 132 4.873129 AGGCAGCGACATACGGCG 62.873 66.667 4.80 4.80 42.83 6.46
133 134 3.913573 GCAGCGACATACGGCGTG 61.914 66.667 24.86 9.67 42.83 5.34
134 135 3.254654 CAGCGACATACGGCGTGG 61.255 66.667 24.86 17.13 42.83 4.94
135 136 4.508128 AGCGACATACGGCGTGGG 62.508 66.667 24.86 16.75 42.83 4.61
136 137 4.807039 GCGACATACGGCGTGGGT 62.807 66.667 24.86 20.07 42.83 4.51
139 140 4.770874 ACATACGGCGTGGGTGGC 62.771 66.667 24.86 0.00 0.00 5.01
157 158 2.964925 GGCGGCGCGACATCATTA 60.965 61.111 26.95 0.00 33.63 1.90
160 161 1.942223 CGGCGCGACATCATTACGA 60.942 57.895 14.85 0.00 0.00 3.43
224 225 4.592426 GTTCTAGACGGTGGCACC 57.408 61.111 26.95 26.95 34.05 5.01
236 237 1.067060 GGTGGCACCTGAAAGTTTCAC 59.933 52.381 29.22 4.93 34.73 3.18
237 238 1.021202 TGGCACCTGAAAGTTTCACG 58.979 50.000 14.35 12.79 35.46 4.35
246 247 0.171455 AAAGTTTCACGCGGTTGCAA 59.829 45.000 12.47 0.00 42.97 4.08
249 250 1.001745 GTTTCACGCGGTTGCAATCC 61.002 55.000 12.47 5.17 42.97 3.01
252 253 2.596046 ACGCGGTTGCAATCCCAA 60.596 55.556 12.47 0.00 42.97 4.12
253 254 2.196925 ACGCGGTTGCAATCCCAAA 61.197 52.632 12.47 0.00 42.97 3.28
256 257 0.670239 GCGGTTGCAATCCCAAAAGG 60.670 55.000 0.59 0.00 42.15 3.11
257 258 3.035295 GCGGTTGCAATCCCAAAAGGA 62.035 52.381 0.59 0.00 45.73 3.36
269 270 4.985538 TCCCAAAAGGATGTGGCTATATC 58.014 43.478 0.00 0.00 40.93 1.63
270 271 4.665009 TCCCAAAAGGATGTGGCTATATCT 59.335 41.667 6.76 0.00 40.93 1.98
271 272 5.006386 CCCAAAAGGATGTGGCTATATCTC 58.994 45.833 6.76 0.00 38.24 2.75
273 274 5.704515 CCAAAAGGATGTGGCTATATCTCAG 59.295 44.000 6.76 0.00 0.00 3.35
274 275 6.294473 CAAAAGGATGTGGCTATATCTCAGT 58.706 40.000 6.76 0.00 0.00 3.41
275 276 5.736951 AAGGATGTGGCTATATCTCAGTC 57.263 43.478 6.76 0.00 0.00 3.51
276 277 3.761218 AGGATGTGGCTATATCTCAGTCG 59.239 47.826 6.76 0.00 0.00 4.18
277 278 3.759086 GGATGTGGCTATATCTCAGTCGA 59.241 47.826 6.76 0.00 0.00 4.20
278 279 4.380023 GGATGTGGCTATATCTCAGTCGAC 60.380 50.000 7.70 7.70 0.00 4.20
279 280 3.821748 TGTGGCTATATCTCAGTCGACT 58.178 45.455 13.58 13.58 0.00 4.18
281 282 5.374071 TGTGGCTATATCTCAGTCGACTAA 58.626 41.667 19.57 1.94 0.00 2.24
284 285 6.637658 GTGGCTATATCTCAGTCGACTAAAAC 59.362 42.308 19.57 1.13 0.00 2.43
286 287 7.068348 TGGCTATATCTCAGTCGACTAAAACTT 59.932 37.037 19.57 5.16 0.00 2.66
288 289 9.947669 GCTATATCTCAGTCGACTAAAACTTAA 57.052 33.333 19.57 0.00 0.00 1.85
292 293 8.745464 ATCTCAGTCGACTAAAACTTAAAGTC 57.255 34.615 19.57 0.00 36.99 3.01
293 294 7.938715 TCTCAGTCGACTAAAACTTAAAGTCT 58.061 34.615 19.57 0.00 37.97 3.24
294 295 8.074972 TCTCAGTCGACTAAAACTTAAAGTCTC 58.925 37.037 19.57 0.00 37.97 3.36
295 296 7.709947 TCAGTCGACTAAAACTTAAAGTCTCA 58.290 34.615 19.57 0.00 37.97 3.27
296 297 7.861372 TCAGTCGACTAAAACTTAAAGTCTCAG 59.139 37.037 19.57 0.00 37.97 3.35
297 298 7.648510 CAGTCGACTAAAACTTAAAGTCTCAGT 59.351 37.037 19.57 0.00 37.97 3.41
298 299 7.861872 AGTCGACTAAAACTTAAAGTCTCAGTC 59.138 37.037 18.46 0.00 37.97 3.51
299 300 7.646922 GTCGACTAAAACTTAAAGTCTCAGTCA 59.353 37.037 8.70 0.20 37.97 3.41
303 304 5.659048 AAACTTAAAGTCTCAGTCAAGCG 57.341 39.130 0.00 0.00 0.00 4.68
304 305 4.585955 ACTTAAAGTCTCAGTCAAGCGA 57.414 40.909 0.00 0.00 0.00 4.93
305 306 4.299978 ACTTAAAGTCTCAGTCAAGCGAC 58.700 43.478 0.00 0.00 42.95 5.19
306 307 2.890808 AAAGTCTCAGTCAAGCGACA 57.109 45.000 0.00 0.00 45.23 4.35
307 308 2.430546 AAGTCTCAGTCAAGCGACAG 57.569 50.000 0.00 0.00 45.23 3.51
308 309 1.610363 AGTCTCAGTCAAGCGACAGA 58.390 50.000 0.00 0.00 45.23 3.41
309 310 1.957177 AGTCTCAGTCAAGCGACAGAA 59.043 47.619 0.00 0.00 45.23 3.02
310 311 2.055100 GTCTCAGTCAAGCGACAGAAC 58.945 52.381 0.00 0.00 45.23 3.01
311 312 1.681264 TCTCAGTCAAGCGACAGAACA 59.319 47.619 0.00 0.00 45.23 3.18
312 313 2.297315 TCTCAGTCAAGCGACAGAACAT 59.703 45.455 0.00 0.00 45.23 2.71
313 314 3.506067 TCTCAGTCAAGCGACAGAACATA 59.494 43.478 0.00 0.00 45.23 2.29
314 315 4.158579 TCTCAGTCAAGCGACAGAACATAT 59.841 41.667 0.00 0.00 45.23 1.78
315 316 5.357032 TCTCAGTCAAGCGACAGAACATATA 59.643 40.000 0.00 0.00 45.23 0.86
316 317 5.961272 TCAGTCAAGCGACAGAACATATAA 58.039 37.500 0.00 0.00 45.23 0.98
317 318 6.394809 TCAGTCAAGCGACAGAACATATAAA 58.605 36.000 0.00 0.00 45.23 1.40
318 319 6.871492 TCAGTCAAGCGACAGAACATATAAAA 59.129 34.615 0.00 0.00 45.23 1.52
319 320 7.386573 TCAGTCAAGCGACAGAACATATAAAAA 59.613 33.333 0.00 0.00 45.23 1.94
320 321 7.689812 CAGTCAAGCGACAGAACATATAAAAAG 59.310 37.037 0.00 0.00 45.23 2.27
321 322 7.602644 AGTCAAGCGACAGAACATATAAAAAGA 59.397 33.333 0.00 0.00 45.23 2.52
322 323 8.227791 GTCAAGCGACAGAACATATAAAAAGAA 58.772 33.333 0.00 0.00 42.13 2.52
323 324 8.443160 TCAAGCGACAGAACATATAAAAAGAAG 58.557 33.333 0.00 0.00 0.00 2.85
324 325 8.443160 CAAGCGACAGAACATATAAAAAGAAGA 58.557 33.333 0.00 0.00 0.00 2.87
325 326 8.547967 AGCGACAGAACATATAAAAAGAAGAA 57.452 30.769 0.00 0.00 0.00 2.52
326 327 8.999431 AGCGACAGAACATATAAAAAGAAGAAA 58.001 29.630 0.00 0.00 0.00 2.52
327 328 9.607285 GCGACAGAACATATAAAAAGAAGAAAA 57.393 29.630 0.00 0.00 0.00 2.29
356 357 9.750125 AATTAAAGAAAATTTCACACAGGTCTC 57.250 29.630 8.55 0.00 0.00 3.36
357 358 5.774498 AAGAAAATTTCACACAGGTCTCC 57.226 39.130 8.55 0.00 0.00 3.71
358 359 4.792068 AGAAAATTTCACACAGGTCTCCA 58.208 39.130 8.55 0.00 0.00 3.86
359 360 4.580580 AGAAAATTTCACACAGGTCTCCAC 59.419 41.667 8.55 0.00 0.00 4.02
360 361 2.169832 ATTTCACACAGGTCTCCACG 57.830 50.000 0.00 0.00 0.00 4.94
361 362 0.828022 TTTCACACAGGTCTCCACGT 59.172 50.000 0.00 0.00 0.00 4.49
362 363 1.694844 TTCACACAGGTCTCCACGTA 58.305 50.000 0.00 0.00 0.00 3.57
363 364 1.694844 TCACACAGGTCTCCACGTAA 58.305 50.000 0.00 0.00 0.00 3.18
365 366 1.611977 CACACAGGTCTCCACGTAAGA 59.388 52.381 0.00 0.00 43.62 2.10
366 367 2.231478 CACACAGGTCTCCACGTAAGAT 59.769 50.000 3.42 0.00 43.62 2.40
367 368 2.492484 ACACAGGTCTCCACGTAAGATC 59.508 50.000 3.42 3.13 43.62 2.75
368 369 2.755655 CACAGGTCTCCACGTAAGATCT 59.244 50.000 7.01 7.01 43.62 2.75
369 370 3.018149 ACAGGTCTCCACGTAAGATCTC 58.982 50.000 9.37 1.68 43.62 2.75
370 371 3.017442 CAGGTCTCCACGTAAGATCTCA 58.983 50.000 9.37 0.00 43.62 3.27
371 372 3.018149 AGGTCTCCACGTAAGATCTCAC 58.982 50.000 7.01 0.00 43.62 3.51
372 373 2.223294 GGTCTCCACGTAAGATCTCACG 60.223 54.545 17.00 17.00 43.63 4.35
373 374 2.676839 GTCTCCACGTAAGATCTCACGA 59.323 50.000 25.04 1.63 40.56 4.35
374 375 3.126514 GTCTCCACGTAAGATCTCACGAA 59.873 47.826 25.04 8.77 40.56 3.85
375 376 3.945921 TCTCCACGTAAGATCTCACGAAT 59.054 43.478 25.04 0.00 40.56 3.34
376 377 5.007430 GTCTCCACGTAAGATCTCACGAATA 59.993 44.000 25.04 8.08 40.56 1.75
377 378 5.007430 TCTCCACGTAAGATCTCACGAATAC 59.993 44.000 25.04 7.61 40.56 1.89
378 379 4.637091 TCCACGTAAGATCTCACGAATACA 59.363 41.667 25.04 1.23 40.56 2.29
379 380 5.124297 TCCACGTAAGATCTCACGAATACAA 59.876 40.000 25.04 1.55 40.56 2.41
380 381 5.229469 CCACGTAAGATCTCACGAATACAAC 59.771 44.000 25.04 0.00 40.56 3.32
381 382 5.798434 CACGTAAGATCTCACGAATACAACA 59.202 40.000 25.04 0.00 40.56 3.33
382 383 6.472486 CACGTAAGATCTCACGAATACAACAT 59.528 38.462 25.04 0.00 40.56 2.71
383 384 6.691818 ACGTAAGATCTCACGAATACAACATC 59.308 38.462 25.04 0.00 40.56 3.06
384 385 6.913132 CGTAAGATCTCACGAATACAACATCT 59.087 38.462 13.42 0.00 40.56 2.90
385 386 7.432545 CGTAAGATCTCACGAATACAACATCTT 59.567 37.037 13.42 0.00 40.56 2.40
386 387 9.088512 GTAAGATCTCACGAATACAACATCTTT 57.911 33.333 0.00 0.00 32.79 2.52
387 388 8.553459 AAGATCTCACGAATACAACATCTTTT 57.447 30.769 0.00 0.00 0.00 2.27
388 389 8.190888 AGATCTCACGAATACAACATCTTTTC 57.809 34.615 0.00 0.00 0.00 2.29
389 390 8.037758 AGATCTCACGAATACAACATCTTTTCT 58.962 33.333 0.00 0.00 0.00 2.52
390 391 7.962964 TCTCACGAATACAACATCTTTTCTT 57.037 32.000 0.00 0.00 0.00 2.52
391 392 8.378172 TCTCACGAATACAACATCTTTTCTTT 57.622 30.769 0.00 0.00 0.00 2.52
392 393 8.836413 TCTCACGAATACAACATCTTTTCTTTT 58.164 29.630 0.00 0.00 0.00 2.27
393 394 9.450807 CTCACGAATACAACATCTTTTCTTTTT 57.549 29.630 0.00 0.00 0.00 1.94
394 395 9.232082 TCACGAATACAACATCTTTTCTTTTTG 57.768 29.630 0.00 0.00 0.00 2.44
395 396 7.998212 CACGAATACAACATCTTTTCTTTTTGC 59.002 33.333 0.00 0.00 0.00 3.68
396 397 7.096640 ACGAATACAACATCTTTTCTTTTTGCG 60.097 33.333 0.00 0.00 0.00 4.85
397 398 7.406799 AATACAACATCTTTTCTTTTTGCGG 57.593 32.000 0.00 0.00 0.00 5.69
398 399 4.119136 ACAACATCTTTTCTTTTTGCGGG 58.881 39.130 0.00 0.00 0.00 6.13
399 400 4.119136 CAACATCTTTTCTTTTTGCGGGT 58.881 39.130 0.00 0.00 0.00 5.28
400 401 4.400529 ACATCTTTTCTTTTTGCGGGTT 57.599 36.364 0.00 0.00 0.00 4.11
401 402 5.523438 ACATCTTTTCTTTTTGCGGGTTA 57.477 34.783 0.00 0.00 0.00 2.85
402 403 6.096673 ACATCTTTTCTTTTTGCGGGTTAT 57.903 33.333 0.00 0.00 0.00 1.89
403 404 7.222000 ACATCTTTTCTTTTTGCGGGTTATA 57.778 32.000 0.00 0.00 0.00 0.98
404 405 7.836842 ACATCTTTTCTTTTTGCGGGTTATAT 58.163 30.769 0.00 0.00 0.00 0.86
405 406 8.962679 ACATCTTTTCTTTTTGCGGGTTATATA 58.037 29.630 0.00 0.00 0.00 0.86
406 407 9.450807 CATCTTTTCTTTTTGCGGGTTATATAG 57.549 33.333 0.00 0.00 0.00 1.31
407 408 7.477494 TCTTTTCTTTTTGCGGGTTATATAGC 58.523 34.615 0.00 0.00 0.00 2.97
408 409 6.761099 TTTCTTTTTGCGGGTTATATAGCA 57.239 33.333 0.00 0.00 37.89 3.49
409 410 6.952773 TTCTTTTTGCGGGTTATATAGCAT 57.047 33.333 0.00 0.00 39.50 3.79
410 411 6.554334 TCTTTTTGCGGGTTATATAGCATC 57.446 37.500 0.00 0.00 39.50 3.91
411 412 5.178623 TCTTTTTGCGGGTTATATAGCATCG 59.821 40.000 0.00 3.63 39.50 3.84
412 413 3.945981 TTGCGGGTTATATAGCATCGA 57.054 42.857 12.95 0.00 39.50 3.59
413 414 3.226346 TGCGGGTTATATAGCATCGAC 57.774 47.619 12.95 7.11 34.39 4.20
414 415 2.823747 TGCGGGTTATATAGCATCGACT 59.176 45.455 12.95 0.00 34.39 4.18
415 416 3.179830 GCGGGTTATATAGCATCGACTG 58.820 50.000 12.95 0.00 0.00 3.51
416 417 3.119602 GCGGGTTATATAGCATCGACTGA 60.120 47.826 12.95 0.00 0.00 3.41
417 418 4.663166 CGGGTTATATAGCATCGACTGAG 58.337 47.826 0.00 0.00 0.00 3.35
418 419 4.395231 CGGGTTATATAGCATCGACTGAGA 59.605 45.833 0.00 0.00 0.00 3.27
419 420 5.106277 CGGGTTATATAGCATCGACTGAGAA 60.106 44.000 0.00 0.00 0.00 2.87
420 421 6.404844 CGGGTTATATAGCATCGACTGAGAAT 60.405 42.308 0.00 0.00 0.00 2.40
421 422 7.324178 GGGTTATATAGCATCGACTGAGAATT 58.676 38.462 0.00 0.00 0.00 2.17
422 423 7.489757 GGGTTATATAGCATCGACTGAGAATTC 59.510 40.741 0.00 0.00 0.00 2.17
423 424 7.219154 GGTTATATAGCATCGACTGAGAATTCG 59.781 40.741 0.00 0.00 36.55 3.34
424 425 2.949451 AGCATCGACTGAGAATTCGT 57.051 45.000 0.00 0.00 36.60 3.85
425 426 3.238108 AGCATCGACTGAGAATTCGTT 57.762 42.857 0.00 0.00 36.60 3.85
426 427 4.371855 AGCATCGACTGAGAATTCGTTA 57.628 40.909 0.00 0.00 36.60 3.18
427 428 4.744570 AGCATCGACTGAGAATTCGTTAA 58.255 39.130 0.00 0.00 36.60 2.01
428 429 4.800993 AGCATCGACTGAGAATTCGTTAAG 59.199 41.667 0.00 0.00 36.60 1.85
429 430 4.563184 GCATCGACTGAGAATTCGTTAAGT 59.437 41.667 0.00 2.71 36.60 2.24
430 431 5.275974 GCATCGACTGAGAATTCGTTAAGTC 60.276 44.000 16.42 16.42 36.60 3.01
431 432 5.624344 TCGACTGAGAATTCGTTAAGTCT 57.376 39.130 20.50 0.00 42.48 3.24
438 439 5.624344 AGAATTCGTTAAGTCTCAGTCGA 57.376 39.130 0.00 0.00 35.14 4.20
439 440 5.392286 AGAATTCGTTAAGTCTCAGTCGAC 58.608 41.667 7.70 7.70 35.14 4.20
440 441 5.181622 AGAATTCGTTAAGTCTCAGTCGACT 59.818 40.000 13.58 13.58 45.73 4.18
441 442 3.808116 TCGTTAAGTCTCAGTCGACTG 57.192 47.619 34.76 34.76 43.14 3.51
454 455 5.633996 CAGTCGACTGAGATTTAGCAATC 57.366 43.478 36.73 0.00 46.59 2.67
455 456 4.505922 CAGTCGACTGAGATTTAGCAATCC 59.494 45.833 36.73 0.00 46.59 3.01
456 457 4.404073 AGTCGACTGAGATTTAGCAATCCT 59.596 41.667 19.30 0.00 39.95 3.24
457 458 4.505922 GTCGACTGAGATTTAGCAATCCTG 59.494 45.833 8.70 0.00 39.95 3.86
458 459 4.402474 TCGACTGAGATTTAGCAATCCTGA 59.598 41.667 0.00 0.00 39.95 3.86
459 460 5.069648 TCGACTGAGATTTAGCAATCCTGAT 59.930 40.000 0.00 0.00 39.95 2.90
460 461 5.404968 CGACTGAGATTTAGCAATCCTGATC 59.595 44.000 0.00 0.00 39.95 2.92
461 462 6.497624 ACTGAGATTTAGCAATCCTGATCT 57.502 37.500 0.00 0.00 39.95 2.75
462 463 6.523840 ACTGAGATTTAGCAATCCTGATCTC 58.476 40.000 0.00 0.00 39.95 2.75
463 464 6.099413 ACTGAGATTTAGCAATCCTGATCTCA 59.901 38.462 11.86 11.86 44.00 3.27
464 465 6.892485 TGAGATTTAGCAATCCTGATCTCAA 58.108 36.000 10.44 0.00 43.67 3.02
465 466 6.765036 TGAGATTTAGCAATCCTGATCTCAAC 59.235 38.462 10.44 0.00 43.67 3.18
466 467 6.656902 AGATTTAGCAATCCTGATCTCAACA 58.343 36.000 0.00 0.00 39.95 3.33
467 468 7.114754 AGATTTAGCAATCCTGATCTCAACAA 58.885 34.615 0.00 0.00 39.95 2.83
468 469 6.748333 TTTAGCAATCCTGATCTCAACAAG 57.252 37.500 0.00 0.00 0.00 3.16
469 470 4.564782 AGCAATCCTGATCTCAACAAGA 57.435 40.909 0.00 0.00 38.72 3.02
471 472 6.244552 AGCAATCCTGATCTCAACAAGATA 57.755 37.500 0.00 0.00 45.06 1.98
472 473 6.054295 AGCAATCCTGATCTCAACAAGATAC 58.946 40.000 0.00 0.00 45.06 2.24
473 474 5.050499 GCAATCCTGATCTCAACAAGATACG 60.050 44.000 0.00 0.00 45.06 3.06
474 475 4.655762 TCCTGATCTCAACAAGATACGG 57.344 45.455 0.00 0.00 45.06 4.02
475 476 3.384789 TCCTGATCTCAACAAGATACGGG 59.615 47.826 0.00 0.00 45.06 5.28
476 477 3.384789 CCTGATCTCAACAAGATACGGGA 59.615 47.826 0.00 0.00 45.06 5.14
477 478 4.141937 CCTGATCTCAACAAGATACGGGAA 60.142 45.833 0.00 0.00 45.06 3.97
478 479 5.011090 TGATCTCAACAAGATACGGGAAG 57.989 43.478 0.00 0.00 45.06 3.46
479 480 3.887621 TCTCAACAAGATACGGGAAGG 57.112 47.619 0.00 0.00 0.00 3.46
480 481 2.093658 TCTCAACAAGATACGGGAAGGC 60.094 50.000 0.00 0.00 0.00 4.35
481 482 1.065709 TCAACAAGATACGGGAAGGCC 60.066 52.381 0.00 0.00 0.00 5.19
482 483 0.988832 AACAAGATACGGGAAGGCCA 59.011 50.000 5.01 0.00 35.15 5.36
483 484 1.213296 ACAAGATACGGGAAGGCCAT 58.787 50.000 5.01 0.00 35.15 4.40
484 485 1.141053 ACAAGATACGGGAAGGCCATC 59.859 52.381 5.01 0.92 35.15 3.51
485 486 1.417890 CAAGATACGGGAAGGCCATCT 59.582 52.381 5.01 0.00 35.15 2.90
486 487 1.807814 AGATACGGGAAGGCCATCTT 58.192 50.000 5.01 0.00 38.65 2.40
487 488 1.417890 AGATACGGGAAGGCCATCTTG 59.582 52.381 5.01 1.60 35.50 3.02
488 489 1.416401 GATACGGGAAGGCCATCTTGA 59.584 52.381 5.01 0.00 35.50 3.02
489 490 0.830648 TACGGGAAGGCCATCTTGAG 59.169 55.000 5.01 0.00 35.50 3.02
490 491 0.909610 ACGGGAAGGCCATCTTGAGA 60.910 55.000 5.01 0.00 35.50 3.27
491 492 0.253044 CGGGAAGGCCATCTTGAGAA 59.747 55.000 5.01 0.00 35.50 2.87
492 493 1.340017 CGGGAAGGCCATCTTGAGAAA 60.340 52.381 5.01 0.00 35.50 2.52
493 494 2.373224 GGGAAGGCCATCTTGAGAAAG 58.627 52.381 5.01 0.00 35.50 2.62
494 495 2.025887 GGGAAGGCCATCTTGAGAAAGA 60.026 50.000 5.01 0.00 35.50 2.52
495 496 3.562176 GGGAAGGCCATCTTGAGAAAGAA 60.562 47.826 5.01 0.00 35.50 2.52
496 497 4.082125 GGAAGGCCATCTTGAGAAAGAAA 58.918 43.478 5.01 0.00 35.50 2.52
497 498 4.157472 GGAAGGCCATCTTGAGAAAGAAAG 59.843 45.833 5.01 0.00 35.50 2.62
498 499 3.694926 AGGCCATCTTGAGAAAGAAAGG 58.305 45.455 5.01 6.15 33.66 3.11
499 500 3.331889 AGGCCATCTTGAGAAAGAAAGGA 59.668 43.478 5.01 0.00 32.82 3.36
500 501 3.441922 GGCCATCTTGAGAAAGAAAGGAC 59.558 47.826 0.00 7.23 32.82 3.85
501 502 3.441922 GCCATCTTGAGAAAGAAAGGACC 59.558 47.826 12.06 0.00 32.82 4.46
502 503 4.809007 GCCATCTTGAGAAAGAAAGGACCT 60.809 45.833 12.06 0.00 32.82 3.85
503 504 4.699257 CCATCTTGAGAAAGAAAGGACCTG 59.301 45.833 0.00 0.00 32.82 4.00
537 549 8.567948 GGATTCTGAAGTCAATTTACAAGAACA 58.432 33.333 0.00 0.00 0.00 3.18
539 551 8.506168 TTCTGAAGTCAATTTACAAGAACAGT 57.494 30.769 0.00 0.00 0.00 3.55
549 561 8.836413 CAATTTACAAGAACAGTTGAAGAGGTA 58.164 33.333 0.00 0.00 0.00 3.08
553 565 7.881775 ACAAGAACAGTTGAAGAGGTATTTT 57.118 32.000 0.00 0.00 0.00 1.82
555 567 8.406297 ACAAGAACAGTTGAAGAGGTATTTTTC 58.594 33.333 0.00 0.00 0.00 2.29
556 568 7.511959 AGAACAGTTGAAGAGGTATTTTTCC 57.488 36.000 0.00 0.00 0.00 3.13
557 569 5.941948 ACAGTTGAAGAGGTATTTTTCCG 57.058 39.130 0.00 0.00 0.00 4.30
559 571 4.215399 CAGTTGAAGAGGTATTTTTCCGCA 59.785 41.667 0.00 0.00 0.00 5.69
560 572 4.825085 AGTTGAAGAGGTATTTTTCCGCAA 59.175 37.500 0.00 0.00 0.00 4.85
561 573 4.759516 TGAAGAGGTATTTTTCCGCAAC 57.240 40.909 0.00 0.00 0.00 4.17
562 574 4.394729 TGAAGAGGTATTTTTCCGCAACT 58.605 39.130 0.00 0.00 0.00 3.16
563 575 4.825085 TGAAGAGGTATTTTTCCGCAACTT 59.175 37.500 0.00 0.00 0.00 2.66
601 613 3.190953 AGACGTTGGAGTTGCTCTACTAC 59.809 47.826 0.00 0.00 31.13 2.73
626 650 1.215655 ATTCGTAAGCTCATCGCGGC 61.216 55.000 6.13 0.43 45.59 6.53
631 655 2.421877 TAAGCTCATCGCGGCTAGGC 62.422 60.000 6.13 6.15 45.59 3.93
687 711 0.619543 CCGTCCCTTTCCTCCCCTTA 60.620 60.000 0.00 0.00 0.00 2.69
688 712 0.831307 CGTCCCTTTCCTCCCCTTAG 59.169 60.000 0.00 0.00 0.00 2.18
689 713 1.214217 GTCCCTTTCCTCCCCTTAGG 58.786 60.000 0.00 0.00 38.06 2.69
690 714 0.623617 TCCCTTTCCTCCCCTTAGGC 60.624 60.000 0.00 0.00 36.51 3.93
691 715 1.646367 CCCTTTCCTCCCCTTAGGCC 61.646 65.000 0.00 0.00 36.51 5.19
692 716 1.646367 CCTTTCCTCCCCTTAGGCCC 61.646 65.000 0.00 0.00 36.51 5.80
693 717 0.624795 CTTTCCTCCCCTTAGGCCCT 60.625 60.000 0.00 0.00 36.51 5.19
694 718 0.178813 TTTCCTCCCCTTAGGCCCTT 60.179 55.000 0.00 0.00 36.51 3.95
695 719 0.178813 TTCCTCCCCTTAGGCCCTTT 60.179 55.000 0.00 0.00 36.51 3.11
696 720 0.178813 TCCTCCCCTTAGGCCCTTTT 60.179 55.000 0.00 0.00 36.51 2.27
697 721 0.259065 CCTCCCCTTAGGCCCTTTTC 59.741 60.000 0.00 0.00 34.51 2.29
1498 1600 2.044650 AATGTGGGCGCAGATGCT 60.045 55.556 14.36 0.00 39.32 3.79
1541 1646 1.959226 AACTGTGCCGCTGTTACCG 60.959 57.895 0.00 0.00 37.46 4.02
1569 1674 1.282875 GCTTGGTTGACTTGGCGTC 59.717 57.895 0.00 0.00 43.14 5.19
1679 1785 6.649557 AGTTTAGTCCAAGTTGATTAGTTCGG 59.350 38.462 3.87 0.00 0.00 4.30
1751 1857 2.778299 TGACCTGTCGGATTTTCCTTG 58.222 47.619 0.00 0.00 33.30 3.61
1756 1862 2.939103 CTGTCGGATTTTCCTTGGCTAG 59.061 50.000 0.00 0.00 33.30 3.42
1779 1885 6.299141 AGTTCCTACTTCATGTGATTGTTGT 58.701 36.000 0.00 0.00 0.00 3.32
1877 1983 2.171840 TCTAGTCAGTCCTGCTTGACC 58.828 52.381 1.34 0.00 35.83 4.02
1878 1984 2.175202 CTAGTCAGTCCTGCTTGACCT 58.825 52.381 1.34 0.00 35.83 3.85
1887 1993 2.149578 CCTGCTTGACCTCTTGAGTTG 58.850 52.381 0.00 0.00 0.00 3.16
2029 2135 5.880332 TCTGAATTTAATACACCTGCCTGAC 59.120 40.000 0.00 0.00 0.00 3.51
2085 2191 5.232463 TGGTTTATTCCACTCTACGTGTTC 58.768 41.667 0.00 0.00 42.20 3.18
2087 2193 5.347907 GGTTTATTCCACTCTACGTGTTCTG 59.652 44.000 0.00 0.00 42.20 3.02
2124 2230 5.711506 TGCTTCATCCACATAATTGTCTTGT 59.288 36.000 0.00 0.00 32.34 3.16
2133 2239 6.863126 CCACATAATTGTCTTGTTCACCTTTC 59.137 38.462 0.00 0.00 32.34 2.62
2144 2250 8.660373 GTCTTGTTCACCTTTCTACAATCTATG 58.340 37.037 0.00 0.00 30.87 2.23
2146 2252 9.653287 CTTGTTCACCTTTCTACAATCTATGTA 57.347 33.333 0.00 0.00 43.63 2.29
2170 2276 7.836358 ATATTTATTTTGCATACACGCTTCG 57.164 32.000 0.00 0.00 0.00 3.79
2173 2279 3.341857 TTTTGCATACACGCTTCGTTT 57.658 38.095 0.00 0.00 38.32 3.60
2273 2379 3.807622 ACACAATCTGACAAACAGTACGG 59.192 43.478 0.00 0.00 45.86 4.02
2376 2485 1.065053 CCACATGTCGATAAACCCCCA 60.065 52.381 0.00 0.00 0.00 4.96
2408 2517 7.979786 TCAGATTTATGGTAGAGAAGACCTT 57.020 36.000 0.00 0.00 37.88 3.50
2476 2585 4.455877 GGATTTGTTGGTCAGGAGTTACAG 59.544 45.833 0.00 0.00 0.00 2.74
2590 2700 3.181458 TGAGTTCCCTGCGAAAACTTACT 60.181 43.478 0.00 0.00 33.54 2.24
2705 2849 7.164230 ACACATTTCTGACCAAGTTTAACAA 57.836 32.000 0.00 0.00 0.00 2.83
2707 2851 8.091449 ACACATTTCTGACCAAGTTTAACAAAA 58.909 29.630 0.00 0.00 0.00 2.44
2752 2896 7.093322 AGTTTTAGAGAATTCACATGGATGC 57.907 36.000 8.44 0.00 0.00 3.91
2769 2913 4.237724 GGATGCCTTCTTAAGTTTGCAAC 58.762 43.478 15.62 13.51 31.81 4.17
2892 3038 4.062293 CAACAAAGGACATCGGTAGTTGA 58.938 43.478 0.00 0.00 37.80 3.18
3113 3260 3.796111 TCCAAGGTCTCCTCATTTCTCT 58.204 45.455 0.00 0.00 30.89 3.10
4329 4482 7.337689 AGAACAAATATGCTTGCTGATGTCTTA 59.662 33.333 0.00 0.00 0.00 2.10
4349 4502 6.811665 GTCTTATTTTGGGTACAGCAAATTCC 59.188 38.462 0.00 0.00 0.00 3.01
4351 4504 0.885196 TTGGGTACAGCAAATTCCGC 59.115 50.000 0.00 0.00 0.00 5.54
4416 4569 6.462073 TGATGTTCGAGTAGTTAACAAAGC 57.538 37.500 8.61 0.00 36.75 3.51
4497 4650 7.114866 AGATAAAGGCTTGGTCTTCTAGTAC 57.885 40.000 0.00 0.00 0.00 2.73
4548 4701 9.106070 GAAGTTAGTTGAAGAAAGGTGAGTTAA 57.894 33.333 0.00 0.00 0.00 2.01
4549 4702 9.457436 AAGTTAGTTGAAGAAAGGTGAGTTAAA 57.543 29.630 0.00 0.00 0.00 1.52
4620 4773 4.806640 ATTTTGGCTGTATCCTGGTTTG 57.193 40.909 0.00 0.00 0.00 2.93
4661 4818 8.297426 TGCCGTGTTATCTTAACTAGATGATAG 58.703 37.037 0.00 0.00 43.52 2.08
4662 4819 8.512956 GCCGTGTTATCTTAACTAGATGATAGA 58.487 37.037 0.00 0.00 43.52 1.98
4781 4938 9.916397 CCAACATAAAAGATACATTCGACTTAC 57.084 33.333 0.00 0.00 0.00 2.34
4972 5161 8.637281 CATGCTTGCATGTTGAGATAAATAAA 57.363 30.769 23.00 0.00 0.00 1.40
4973 5162 9.256477 CATGCTTGCATGTTGAGATAAATAAAT 57.744 29.630 23.00 0.00 0.00 1.40
4974 5163 9.826574 ATGCTTGCATGTTGAGATAAATAAATT 57.173 25.926 7.35 0.00 0.00 1.82
5062 5251 6.737720 AGCACTGAAATCTAGATACATCCA 57.262 37.500 5.46 0.00 0.00 3.41
5083 5272 4.155826 CCATTTGAGCGTCAACTAATTCCA 59.844 41.667 0.76 0.00 35.89 3.53
5085 5274 2.346803 TGAGCGTCAACTAATTCCAGC 58.653 47.619 0.00 0.00 0.00 4.85
5087 5276 1.279271 AGCGTCAACTAATTCCAGCCT 59.721 47.619 0.00 0.00 0.00 4.58
5093 5282 3.782523 TCAACTAATTCCAGCCTGAGGAT 59.217 43.478 0.65 0.00 34.56 3.24
5160 5349 9.613428 ACTATGTAAGTTATATGCTTCTGCAAA 57.387 29.630 2.60 0.00 44.28 3.68
5466 6075 4.185394 TCGTGCTCAGTTTTGTTAGTGAA 58.815 39.130 0.00 0.00 0.00 3.18
5524 6649 3.035363 TGTTGTGGTGACTCAGTTCCTA 58.965 45.455 2.39 0.00 34.92 2.94
5525 6650 3.452990 TGTTGTGGTGACTCAGTTCCTAA 59.547 43.478 2.39 0.00 34.92 2.69
5803 6942 9.642327 TGGAAATGATCTTCATTATTTGTGTTG 57.358 29.630 3.34 0.00 45.57 3.33
5900 7039 3.890147 ACCTGGGTAGTAGATTCGCTTAG 59.110 47.826 0.00 0.00 0.00 2.18
6050 7189 6.227298 TCTCTAGCTTCAAATTCCTACCTG 57.773 41.667 0.00 0.00 0.00 4.00
6198 7337 3.099002 TGTGCTGCATTCACACAGT 57.901 47.368 15.36 0.00 39.29 3.55
6199 7338 0.946528 TGTGCTGCATTCACACAGTC 59.053 50.000 15.36 0.00 39.29 3.51
6200 7339 0.110509 GTGCTGCATTCACACAGTCG 60.111 55.000 5.27 0.00 36.26 4.18
6201 7340 1.229975 TGCTGCATTCACACAGTCGG 61.230 55.000 0.00 0.00 36.26 4.79
6202 7341 1.230635 GCTGCATTCACACAGTCGGT 61.231 55.000 0.00 0.00 36.26 4.69
6203 7342 0.792640 CTGCATTCACACAGTCGGTC 59.207 55.000 0.00 0.00 0.00 4.79
6204 7343 0.105778 TGCATTCACACAGTCGGTCA 59.894 50.000 0.00 0.00 0.00 4.02
6205 7344 1.270785 TGCATTCACACAGTCGGTCAT 60.271 47.619 0.00 0.00 0.00 3.06
6206 7345 1.129251 GCATTCACACAGTCGGTCATG 59.871 52.381 0.00 0.00 0.00 3.07
6207 7346 2.687370 CATTCACACAGTCGGTCATGA 58.313 47.619 0.00 0.00 0.00 3.07
6208 7347 3.264947 CATTCACACAGTCGGTCATGAT 58.735 45.455 0.00 0.00 0.00 2.45
6209 7348 3.401033 TTCACACAGTCGGTCATGATT 57.599 42.857 0.00 0.00 0.00 2.57
6210 7349 3.401033 TCACACAGTCGGTCATGATTT 57.599 42.857 0.00 0.00 0.00 2.17
6211 7350 3.325870 TCACACAGTCGGTCATGATTTC 58.674 45.455 0.00 0.00 0.00 2.17
6212 7351 2.416547 CACACAGTCGGTCATGATTTCC 59.583 50.000 0.00 0.00 0.00 3.13
6213 7352 2.009774 CACAGTCGGTCATGATTTCCC 58.990 52.381 0.00 0.00 0.00 3.97
6214 7353 1.065418 ACAGTCGGTCATGATTTCCCC 60.065 52.381 0.00 0.00 0.00 4.81
6215 7354 0.546598 AGTCGGTCATGATTTCCCCC 59.453 55.000 0.00 0.00 0.00 5.40
6408 7868 5.191727 TGAATCTGCAATTTTAGAGGGGA 57.808 39.130 0.00 0.00 0.00 4.81
6418 7878 6.183360 GCAATTTTAGAGGGGACTTGAATACC 60.183 42.308 0.00 0.00 44.43 2.73
6467 7928 6.694445 AATTAAATGTTGATTTGGTCCCCA 57.306 33.333 0.00 0.00 33.63 4.96
6500 7961 1.863454 GATTGCATCGTAGCACCTCAG 59.137 52.381 4.13 0.00 45.61 3.35
6818 8280 6.582636 GTTTTGAGGAGGTTTGATTTCCTTT 58.417 36.000 0.00 0.00 41.32 3.11
7012 8474 2.178912 TGGCGAGGGAAGTTTACAAG 57.821 50.000 0.00 0.00 0.00 3.16
7038 8500 2.512476 GGGAAGGTAATAAGGCCAGGAA 59.488 50.000 5.01 0.00 0.00 3.36
7102 8564 7.547370 GGAGGTATGTCTGCATCTAATATGAAC 59.453 40.741 0.00 0.00 36.58 3.18
7116 8578 1.730501 ATGAACACAGATGCTCACCG 58.269 50.000 0.00 0.00 33.81 4.94
7169 8635 8.424133 ACTCCTTTATTTCTTCAGCACATTTTT 58.576 29.630 0.00 0.00 0.00 1.94
7171 8637 7.656948 TCCTTTATTTCTTCAGCACATTTTTGG 59.343 33.333 0.00 0.00 0.00 3.28
7172 8638 7.442062 CCTTTATTTCTTCAGCACATTTTTGGT 59.558 33.333 0.00 0.00 0.00 3.67
7173 8639 9.474920 CTTTATTTCTTCAGCACATTTTTGGTA 57.525 29.630 0.00 0.00 0.00 3.25
7304 8771 4.142469 GGGATGGGTTTCAACAATAAGACG 60.142 45.833 0.00 0.00 0.00 4.18
7307 8774 2.413634 GGGTTTCAACAATAAGACGGCG 60.414 50.000 4.80 4.80 0.00 6.46
7439 8907 6.245408 ACTTGCTCCATTTAAGGTATTGTCA 58.755 36.000 0.00 0.00 0.00 3.58
7440 8908 6.375455 ACTTGCTCCATTTAAGGTATTGTCAG 59.625 38.462 0.00 0.00 0.00 3.51
7443 8911 5.652452 GCTCCATTTAAGGTATTGTCAGGTT 59.348 40.000 0.00 0.00 0.00 3.50
7449 8917 3.268023 AGGTATTGTCAGGTTAGCTGC 57.732 47.619 6.54 2.98 0.00 5.25
7451 8919 2.678336 GGTATTGTCAGGTTAGCTGCAC 59.322 50.000 6.54 6.78 0.00 4.57
7472 8943 4.023291 ACGCTTTGGAATTTCATATGGGT 58.977 39.130 2.13 0.00 0.00 4.51
7498 8969 6.424176 TGTTCTAAAACGACACATTGTTGA 57.576 33.333 0.40 0.00 38.28 3.18
7531 9002 2.104451 CTCAAGGATGGCTGCACTAGAT 59.896 50.000 0.50 0.00 0.00 1.98
7761 9232 5.041940 AGCATTTACGACTCGTATTCTTCC 58.958 41.667 11.99 0.58 41.97 3.46
7787 9259 5.967088 TCTGTAGTCTTTAGTCATGCCTTC 58.033 41.667 0.00 0.00 0.00 3.46
7973 9448 7.362487 CCCATACACACTAGATAGTATCAGCAG 60.362 44.444 12.66 8.48 34.13 4.24
8003 9478 4.530710 ACTAACGTATTTCTCTGGCACA 57.469 40.909 0.00 0.00 0.00 4.57
8108 9589 6.052360 TCGATTTATGTATAGCTTGTGCCAA 58.948 36.000 0.00 0.00 40.80 4.52
8109 9590 6.018262 TCGATTTATGTATAGCTTGTGCCAAC 60.018 38.462 0.00 0.00 40.80 3.77
8110 9591 6.238347 CGATTTATGTATAGCTTGTGCCAACA 60.238 38.462 0.00 0.00 40.80 3.33
8111 9592 6.435430 TTTATGTATAGCTTGTGCCAACAG 57.565 37.500 0.00 0.00 40.80 3.16
8112 9593 2.083774 TGTATAGCTTGTGCCAACAGC 58.916 47.619 0.00 0.00 40.80 4.40
8155 9646 4.502259 CCCTAGTCTTGCTGCTAACCATAG 60.502 50.000 0.00 0.00 0.00 2.23
8236 9727 5.808366 TGAAGTTCCAGACAGATTAGTGT 57.192 39.130 0.00 0.00 0.00 3.55
8237 9728 6.174720 TGAAGTTCCAGACAGATTAGTGTT 57.825 37.500 0.00 0.00 0.00 3.32
8244 9735 5.538813 TCCAGACAGATTAGTGTTGTAGTGT 59.461 40.000 0.00 0.00 0.00 3.55
8302 9793 5.533154 TCGTACACAAATTTTGATGGAAGGT 59.467 36.000 15.81 4.98 0.00 3.50
8353 9844 3.724478 TCCCCTCTTGCTCTAGAAATGA 58.276 45.455 0.00 0.00 0.00 2.57
8387 9878 4.041938 TGTCTTGTTTACCGGGGTCTTATT 59.958 41.667 6.32 0.00 0.00 1.40
8459 9950 2.416547 CTGTATGGAGCAAACGTTGGAG 59.583 50.000 6.92 0.00 0.00 3.86
8503 9997 1.897398 GCTTTGTCACCGTACAGCCG 61.897 60.000 0.00 0.00 0.00 5.52
8562 10060 3.428045 GCTTACTGCATCCAACCATCAAC 60.428 47.826 0.00 0.00 42.31 3.18
8582 10080 2.039480 ACTGGTGCATGATCAGTTGAGT 59.961 45.455 0.09 0.00 44.22 3.41
8600 10109 6.893554 AGTTGAGTAGGTAAACCCTTGTTTTT 59.106 34.615 0.00 0.00 42.73 1.94
8609 10118 8.255206 AGGTAAACCCTTGTTTTTCTAAAACAG 58.745 33.333 14.93 8.68 42.73 3.16
8613 10122 7.654022 ACCCTTGTTTTTCTAAAACAGATCA 57.346 32.000 14.93 3.44 40.70 2.92
8617 10126 9.237846 CCTTGTTTTTCTAAAACAGATCAGTTC 57.762 33.333 14.93 0.00 40.70 3.01
8690 10203 0.322546 AGGGCCGAACATTCAAGTCC 60.323 55.000 0.00 0.00 0.00 3.85
8795 10497 3.842925 GAACGACAAGGCCCTGGCA 62.843 63.158 8.24 0.00 44.11 4.92
8808 10510 1.377994 CTGGCAAAGGGAGAGCAGT 59.622 57.895 0.00 0.00 0.00 4.40
8809 10511 0.676151 CTGGCAAAGGGAGAGCAGTC 60.676 60.000 0.00 0.00 0.00 3.51
8813 10896 1.433534 CAAAGGGAGAGCAGTCGAAC 58.566 55.000 0.00 0.00 0.00 3.95
8829 10912 3.059529 GTCGAACAGCCTTCTCTTGAAAC 60.060 47.826 0.00 0.00 0.00 2.78
8868 10954 0.402121 GGAGCACCACTTTTCCTCCT 59.598 55.000 0.00 0.00 39.15 3.69
8913 10999 3.490759 CGCGTCGCTGATGGCTTT 61.491 61.111 16.36 0.00 39.13 3.51
8954 11043 1.001406 CCGAAGAGGCAAGAGAACAGT 59.999 52.381 0.00 0.00 0.00 3.55
8955 11044 2.064762 CGAAGAGGCAAGAGAACAGTG 58.935 52.381 0.00 0.00 0.00 3.66
8958 11047 0.322008 GAGGCAAGAGAACAGTGGGG 60.322 60.000 0.00 0.00 0.00 4.96
8959 11048 1.303643 GGCAAGAGAACAGTGGGGG 60.304 63.158 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.587443 TGTAGTCGTTCTAAGTAGCATAGCA 59.413 40.000 0.00 0.00 0.00 3.49
1 2 6.057627 TGTAGTCGTTCTAAGTAGCATAGC 57.942 41.667 0.00 0.00 0.00 2.97
2 3 7.428761 GTGTTGTAGTCGTTCTAAGTAGCATAG 59.571 40.741 0.00 0.00 0.00 2.23
3 4 7.246311 GTGTTGTAGTCGTTCTAAGTAGCATA 58.754 38.462 0.00 0.00 0.00 3.14
4 5 6.091437 GTGTTGTAGTCGTTCTAAGTAGCAT 58.909 40.000 0.00 0.00 0.00 3.79
5 6 5.455392 GTGTTGTAGTCGTTCTAAGTAGCA 58.545 41.667 0.00 0.00 0.00 3.49
6 7 4.552660 CGTGTTGTAGTCGTTCTAAGTAGC 59.447 45.833 0.00 0.00 0.00 3.58
7 8 5.084722 CCGTGTTGTAGTCGTTCTAAGTAG 58.915 45.833 0.00 0.00 0.00 2.57
8 9 4.083324 CCCGTGTTGTAGTCGTTCTAAGTA 60.083 45.833 0.00 0.00 0.00 2.24
9 10 3.304928 CCCGTGTTGTAGTCGTTCTAAGT 60.305 47.826 0.00 0.00 0.00 2.24
10 11 3.240069 CCCGTGTTGTAGTCGTTCTAAG 58.760 50.000 0.00 0.00 0.00 2.18
11 12 2.607771 GCCCGTGTTGTAGTCGTTCTAA 60.608 50.000 0.00 0.00 0.00 2.10
12 13 1.068333 GCCCGTGTTGTAGTCGTTCTA 60.068 52.381 0.00 0.00 0.00 2.10
13 14 0.319297 GCCCGTGTTGTAGTCGTTCT 60.319 55.000 0.00 0.00 0.00 3.01
14 15 1.611592 CGCCCGTGTTGTAGTCGTTC 61.612 60.000 0.00 0.00 0.00 3.95
15 16 1.662446 CGCCCGTGTTGTAGTCGTT 60.662 57.895 0.00 0.00 0.00 3.85
16 17 2.049802 CGCCCGTGTTGTAGTCGT 60.050 61.111 0.00 0.00 0.00 4.34
17 18 1.800315 CTCGCCCGTGTTGTAGTCG 60.800 63.158 0.00 0.00 0.00 4.18
18 19 1.445582 CCTCGCCCGTGTTGTAGTC 60.446 63.158 0.00 0.00 0.00 2.59
19 20 2.654877 CCTCGCCCGTGTTGTAGT 59.345 61.111 0.00 0.00 0.00 2.73
20 21 2.813908 GCCTCGCCCGTGTTGTAG 60.814 66.667 0.00 0.00 0.00 2.74
21 22 3.583276 CTGCCTCGCCCGTGTTGTA 62.583 63.158 0.00 0.00 0.00 2.41
22 23 4.988598 CTGCCTCGCCCGTGTTGT 62.989 66.667 0.00 0.00 0.00 3.32
49 50 3.188786 GTTAGCCGCTGCCGTCTG 61.189 66.667 2.16 0.00 38.69 3.51
50 51 3.649277 CTGTTAGCCGCTGCCGTCT 62.649 63.158 2.16 0.00 38.69 4.18
51 52 3.188786 CTGTTAGCCGCTGCCGTC 61.189 66.667 2.16 0.00 38.69 4.79
54 55 3.804193 GTGCTGTTAGCCGCTGCC 61.804 66.667 2.16 0.00 41.51 4.85
55 56 4.152625 CGTGCTGTTAGCCGCTGC 62.153 66.667 2.16 0.00 41.51 5.25
56 57 3.490759 CCGTGCTGTTAGCCGCTG 61.491 66.667 2.16 0.00 41.51 5.18
57 58 4.760047 CCCGTGCTGTTAGCCGCT 62.760 66.667 0.00 0.00 41.51 5.52
60 61 4.752879 TCGCCCGTGCTGTTAGCC 62.753 66.667 0.00 0.00 41.51 3.93
61 62 3.188786 CTCGCCCGTGCTGTTAGC 61.189 66.667 0.00 0.00 42.82 3.09
62 63 2.509336 CCTCGCCCGTGCTGTTAG 60.509 66.667 0.00 0.00 34.43 2.34
63 64 4.752879 GCCTCGCCCGTGCTGTTA 62.753 66.667 0.00 0.00 34.43 2.41
86 87 3.127533 GTTAGCTGCTGCCACCCG 61.128 66.667 13.43 0.00 40.80 5.28
87 88 1.603455 TTGTTAGCTGCTGCCACCC 60.603 57.895 13.43 0.00 40.80 4.61
88 89 1.172180 TGTTGTTAGCTGCTGCCACC 61.172 55.000 13.43 1.76 40.80 4.61
89 90 0.040067 GTGTTGTTAGCTGCTGCCAC 60.040 55.000 13.43 9.99 40.80 5.01
90 91 1.506309 CGTGTTGTTAGCTGCTGCCA 61.506 55.000 13.43 5.68 40.80 4.92
91 92 1.207593 CGTGTTGTTAGCTGCTGCC 59.792 57.895 13.43 2.81 40.80 4.85
92 93 1.207593 CCGTGTTGTTAGCTGCTGC 59.792 57.895 13.43 7.62 40.05 5.25
93 94 1.207593 GCCGTGTTGTTAGCTGCTG 59.792 57.895 13.43 0.00 0.00 4.41
94 95 1.966451 GGCCGTGTTGTTAGCTGCT 60.966 57.895 7.57 7.57 0.00 4.24
95 96 2.561373 GGCCGTGTTGTTAGCTGC 59.439 61.111 0.00 0.00 0.00 5.25
96 97 1.626654 CTCGGCCGTGTTGTTAGCTG 61.627 60.000 27.15 0.00 0.00 4.24
97 98 1.374252 CTCGGCCGTGTTGTTAGCT 60.374 57.895 27.15 0.00 0.00 3.32
98 99 2.388232 CCTCGGCCGTGTTGTTAGC 61.388 63.158 27.15 0.00 0.00 3.09
99 100 2.388232 GCCTCGGCCGTGTTGTTAG 61.388 63.158 27.15 13.14 34.56 2.34
100 101 2.357760 GCCTCGGCCGTGTTGTTA 60.358 61.111 27.15 1.93 34.56 2.41
101 102 4.555709 TGCCTCGGCCGTGTTGTT 62.556 61.111 27.15 0.00 41.09 2.83
102 103 4.988598 CTGCCTCGGCCGTGTTGT 62.989 66.667 27.15 0.00 41.09 3.32
109 110 4.221422 TATGTCGCTGCCTCGGCC 62.221 66.667 5.33 0.00 41.09 6.13
110 111 2.962253 GTATGTCGCTGCCTCGGC 60.962 66.667 0.00 0.00 42.35 5.54
111 112 2.655364 CGTATGTCGCTGCCTCGG 60.655 66.667 0.00 0.00 0.00 4.63
112 113 2.655364 CCGTATGTCGCTGCCTCG 60.655 66.667 0.00 0.00 38.35 4.63
113 114 2.962253 GCCGTATGTCGCTGCCTC 60.962 66.667 0.00 0.00 38.35 4.70
114 115 4.873129 CGCCGTATGTCGCTGCCT 62.873 66.667 0.00 0.00 38.35 4.75
116 117 3.913573 CACGCCGTATGTCGCTGC 61.914 66.667 0.00 0.00 38.35 5.25
117 118 3.254654 CCACGCCGTATGTCGCTG 61.255 66.667 0.00 0.00 38.35 5.18
118 119 4.508128 CCCACGCCGTATGTCGCT 62.508 66.667 0.00 0.00 38.35 4.93
119 120 4.807039 ACCCACGCCGTATGTCGC 62.807 66.667 0.00 0.00 38.35 5.19
120 121 2.883730 CACCCACGCCGTATGTCG 60.884 66.667 0.00 0.00 39.52 4.35
121 122 2.510691 CCACCCACGCCGTATGTC 60.511 66.667 0.00 0.00 0.00 3.06
122 123 4.770874 GCCACCCACGCCGTATGT 62.771 66.667 0.00 0.00 0.00 2.29
154 155 2.657296 CGCCGTCCGCATCGTAAT 60.657 61.111 0.00 0.00 37.30 1.89
171 172 0.034476 AACTTCGTCGGAAAGTCCCC 59.966 55.000 0.34 0.00 31.13 4.81
208 209 0.541063 TCAGGTGCCACCGTCTAGAA 60.541 55.000 8.52 0.00 44.90 2.10
219 220 0.317854 GCGTGAAACTTTCAGGTGCC 60.318 55.000 20.11 5.67 44.89 5.01
224 225 1.741993 CAACCGCGTGAAACTTTCAG 58.258 50.000 4.92 1.47 41.01 3.02
236 237 1.006805 TTTTGGGATTGCAACCGCG 60.007 52.632 0.00 0.00 42.97 6.46
237 238 0.670239 CCTTTTGGGATTGCAACCGC 60.670 55.000 0.00 0.00 37.23 5.68
249 250 5.624159 TGAGATATAGCCACATCCTTTTGG 58.376 41.667 0.00 0.00 42.21 3.28
252 253 5.279206 CGACTGAGATATAGCCACATCCTTT 60.279 44.000 0.00 0.00 0.00 3.11
253 254 4.219507 CGACTGAGATATAGCCACATCCTT 59.780 45.833 0.00 0.00 0.00 3.36
256 257 4.457603 AGTCGACTGAGATATAGCCACATC 59.542 45.833 19.30 0.00 0.00 3.06
257 258 4.402829 AGTCGACTGAGATATAGCCACAT 58.597 43.478 19.30 0.00 0.00 3.21
258 259 3.821748 AGTCGACTGAGATATAGCCACA 58.178 45.455 19.30 0.00 0.00 4.17
259 260 5.943706 TTAGTCGACTGAGATATAGCCAC 57.056 43.478 28.12 0.00 0.00 5.01
261 262 6.972722 AGTTTTAGTCGACTGAGATATAGCC 58.027 40.000 28.12 2.31 0.00 3.93
262 263 9.947669 TTAAGTTTTAGTCGACTGAGATATAGC 57.052 33.333 28.12 6.53 0.00 2.97
266 267 9.837525 GACTTTAAGTTTTAGTCGACTGAGATA 57.162 33.333 28.12 4.38 0.00 1.98
268 269 7.938715 AGACTTTAAGTTTTAGTCGACTGAGA 58.061 34.615 28.12 12.62 42.35 3.27
269 270 7.861372 TGAGACTTTAAGTTTTAGTCGACTGAG 59.139 37.037 28.12 7.79 42.35 3.35
270 271 7.709947 TGAGACTTTAAGTTTTAGTCGACTGA 58.290 34.615 28.12 17.78 42.35 3.41
271 272 7.648510 ACTGAGACTTTAAGTTTTAGTCGACTG 59.351 37.037 28.12 9.38 42.35 3.51
273 274 7.646922 TGACTGAGACTTTAAGTTTTAGTCGAC 59.353 37.037 24.46 7.70 43.96 4.20
274 275 7.709947 TGACTGAGACTTTAAGTTTTAGTCGA 58.290 34.615 24.46 16.01 43.96 4.20
275 276 7.925703 TGACTGAGACTTTAAGTTTTAGTCG 57.074 36.000 24.46 5.91 43.96 4.18
276 277 8.277018 GCTTGACTGAGACTTTAAGTTTTAGTC 58.723 37.037 23.89 23.89 42.48 2.59
277 278 7.042658 CGCTTGACTGAGACTTTAAGTTTTAGT 60.043 37.037 11.72 11.72 32.99 2.24
278 279 7.169308 TCGCTTGACTGAGACTTTAAGTTTTAG 59.831 37.037 0.00 2.46 0.00 1.85
279 280 6.982141 TCGCTTGACTGAGACTTTAAGTTTTA 59.018 34.615 0.00 0.00 0.00 1.52
281 282 5.234543 GTCGCTTGACTGAGACTTTAAGTTT 59.765 40.000 0.00 0.00 39.61 2.66
284 285 4.299155 TGTCGCTTGACTGAGACTTTAAG 58.701 43.478 0.00 0.00 43.29 1.85
286 287 3.568430 TCTGTCGCTTGACTGAGACTTTA 59.432 43.478 1.51 0.00 43.17 1.85
288 289 1.957177 TCTGTCGCTTGACTGAGACTT 59.043 47.619 1.51 0.00 43.17 3.01
289 290 1.610363 TCTGTCGCTTGACTGAGACT 58.390 50.000 1.51 0.00 43.17 3.24
290 291 2.055100 GTTCTGTCGCTTGACTGAGAC 58.945 52.381 5.39 0.00 46.80 3.36
291 292 1.681264 TGTTCTGTCGCTTGACTGAGA 59.319 47.619 5.39 0.00 46.80 3.27
292 293 2.140065 TGTTCTGTCGCTTGACTGAG 57.860 50.000 5.39 0.00 46.80 3.35
293 294 2.820059 ATGTTCTGTCGCTTGACTGA 57.180 45.000 1.51 1.51 45.37 3.41
294 295 6.647212 TTTATATGTTCTGTCGCTTGACTG 57.353 37.500 0.00 0.00 43.29 3.51
295 296 7.602644 TCTTTTTATATGTTCTGTCGCTTGACT 59.397 33.333 0.00 0.00 43.29 3.41
296 297 7.739295 TCTTTTTATATGTTCTGTCGCTTGAC 58.261 34.615 0.00 0.00 43.19 3.18
297 298 7.899178 TCTTTTTATATGTTCTGTCGCTTGA 57.101 32.000 0.00 0.00 0.00 3.02
298 299 8.443160 TCTTCTTTTTATATGTTCTGTCGCTTG 58.557 33.333 0.00 0.00 0.00 4.01
299 300 8.547967 TCTTCTTTTTATATGTTCTGTCGCTT 57.452 30.769 0.00 0.00 0.00 4.68
330 331 9.750125 GAGACCTGTGTGAAATTTTCTTTAATT 57.250 29.630 10.33 0.00 0.00 1.40
331 332 8.360390 GGAGACCTGTGTGAAATTTTCTTTAAT 58.640 33.333 10.33 0.00 0.00 1.40
332 333 7.340743 TGGAGACCTGTGTGAAATTTTCTTTAA 59.659 33.333 10.33 0.00 0.00 1.52
333 334 6.831353 TGGAGACCTGTGTGAAATTTTCTTTA 59.169 34.615 10.33 0.00 0.00 1.85
334 335 5.656416 TGGAGACCTGTGTGAAATTTTCTTT 59.344 36.000 10.33 0.00 0.00 2.52
335 336 5.067805 GTGGAGACCTGTGTGAAATTTTCTT 59.932 40.000 10.33 0.00 0.00 2.52
336 337 4.580580 GTGGAGACCTGTGTGAAATTTTCT 59.419 41.667 10.33 0.00 0.00 2.52
337 338 4.554723 CGTGGAGACCTGTGTGAAATTTTC 60.555 45.833 2.05 2.05 0.00 2.29
338 339 3.315191 CGTGGAGACCTGTGTGAAATTTT 59.685 43.478 0.00 0.00 0.00 1.82
339 340 2.878406 CGTGGAGACCTGTGTGAAATTT 59.122 45.455 0.00 0.00 0.00 1.82
340 341 2.158813 ACGTGGAGACCTGTGTGAAATT 60.159 45.455 0.00 0.00 0.00 1.82
341 342 1.416401 ACGTGGAGACCTGTGTGAAAT 59.584 47.619 0.00 0.00 0.00 2.17
342 343 0.828022 ACGTGGAGACCTGTGTGAAA 59.172 50.000 0.00 0.00 0.00 2.69
343 344 1.694844 TACGTGGAGACCTGTGTGAA 58.305 50.000 0.00 0.00 0.00 3.18
344 345 1.611977 CTTACGTGGAGACCTGTGTGA 59.388 52.381 0.00 0.00 0.00 3.58
345 346 1.611977 TCTTACGTGGAGACCTGTGTG 59.388 52.381 0.00 0.00 0.00 3.82
346 347 1.991121 TCTTACGTGGAGACCTGTGT 58.009 50.000 0.00 0.00 0.00 3.72
347 348 2.755655 AGATCTTACGTGGAGACCTGTG 59.244 50.000 0.00 0.00 0.00 3.66
348 349 3.018149 GAGATCTTACGTGGAGACCTGT 58.982 50.000 0.00 0.00 0.00 4.00
349 350 3.017442 TGAGATCTTACGTGGAGACCTG 58.983 50.000 0.00 0.00 0.00 4.00
350 351 3.018149 GTGAGATCTTACGTGGAGACCT 58.982 50.000 1.38 0.00 0.00 3.85
351 352 2.223294 CGTGAGATCTTACGTGGAGACC 60.223 54.545 26.80 0.00 37.72 3.85
352 353 2.676839 TCGTGAGATCTTACGTGGAGAC 59.323 50.000 31.40 2.23 42.22 3.36
353 354 2.981898 TCGTGAGATCTTACGTGGAGA 58.018 47.619 31.40 15.13 42.22 3.71
354 355 3.759527 TTCGTGAGATCTTACGTGGAG 57.240 47.619 31.40 10.65 42.22 3.86
355 356 4.637091 TGTATTCGTGAGATCTTACGTGGA 59.363 41.667 31.40 21.47 42.22 4.02
356 357 4.916870 TGTATTCGTGAGATCTTACGTGG 58.083 43.478 31.40 11.30 42.22 4.94
357 358 5.798434 TGTTGTATTCGTGAGATCTTACGTG 59.202 40.000 31.40 11.93 42.22 4.49
358 359 5.946298 TGTTGTATTCGTGAGATCTTACGT 58.054 37.500 31.40 20.00 42.22 3.57
359 360 6.913132 AGATGTTGTATTCGTGAGATCTTACG 59.087 38.462 28.58 28.58 42.82 3.18
360 361 8.635877 AAGATGTTGTATTCGTGAGATCTTAC 57.364 34.615 7.56 7.56 41.60 2.34
361 362 9.653287 AAAAGATGTTGTATTCGTGAGATCTTA 57.347 29.630 0.00 0.00 41.60 2.10
362 363 8.553459 AAAAGATGTTGTATTCGTGAGATCTT 57.447 30.769 0.00 0.00 41.60 2.40
363 364 8.037758 AGAAAAGATGTTGTATTCGTGAGATCT 58.962 33.333 0.00 0.00 41.60 2.75
364 365 8.190888 AGAAAAGATGTTGTATTCGTGAGATC 57.809 34.615 0.00 0.00 41.60 2.75
365 366 8.553459 AAGAAAAGATGTTGTATTCGTGAGAT 57.447 30.769 0.00 0.00 41.60 2.75
366 367 7.962964 AAGAAAAGATGTTGTATTCGTGAGA 57.037 32.000 0.00 0.00 39.20 3.27
367 368 9.450807 AAAAAGAAAAGATGTTGTATTCGTGAG 57.549 29.630 0.00 0.00 0.00 3.51
368 369 9.232082 CAAAAAGAAAAGATGTTGTATTCGTGA 57.768 29.630 0.00 0.00 0.00 4.35
369 370 7.998212 GCAAAAAGAAAAGATGTTGTATTCGTG 59.002 33.333 0.00 0.00 0.00 4.35
370 371 7.096640 CGCAAAAAGAAAAGATGTTGTATTCGT 60.097 33.333 0.00 0.00 0.00 3.85
371 372 7.213139 CGCAAAAAGAAAAGATGTTGTATTCG 58.787 34.615 0.00 0.00 0.00 3.34
372 373 7.359181 CCCGCAAAAAGAAAAGATGTTGTATTC 60.359 37.037 0.00 0.00 0.00 1.75
373 374 6.423604 CCCGCAAAAAGAAAAGATGTTGTATT 59.576 34.615 0.00 0.00 0.00 1.89
374 375 5.925969 CCCGCAAAAAGAAAAGATGTTGTAT 59.074 36.000 0.00 0.00 0.00 2.29
375 376 5.163499 ACCCGCAAAAAGAAAAGATGTTGTA 60.163 36.000 0.00 0.00 0.00 2.41
376 377 4.119136 CCCGCAAAAAGAAAAGATGTTGT 58.881 39.130 0.00 0.00 0.00 3.32
377 378 4.119136 ACCCGCAAAAAGAAAAGATGTTG 58.881 39.130 0.00 0.00 0.00 3.33
378 379 4.400529 ACCCGCAAAAAGAAAAGATGTT 57.599 36.364 0.00 0.00 0.00 2.71
379 380 4.400529 AACCCGCAAAAAGAAAAGATGT 57.599 36.364 0.00 0.00 0.00 3.06
380 381 9.450807 CTATATAACCCGCAAAAAGAAAAGATG 57.549 33.333 0.00 0.00 0.00 2.90
381 382 8.135529 GCTATATAACCCGCAAAAAGAAAAGAT 58.864 33.333 0.00 0.00 0.00 2.40
382 383 7.121463 TGCTATATAACCCGCAAAAAGAAAAGA 59.879 33.333 0.00 0.00 0.00 2.52
383 384 7.254852 TGCTATATAACCCGCAAAAAGAAAAG 58.745 34.615 0.00 0.00 0.00 2.27
384 385 7.159322 TGCTATATAACCCGCAAAAAGAAAA 57.841 32.000 0.00 0.00 0.00 2.29
385 386 6.761099 TGCTATATAACCCGCAAAAAGAAA 57.239 33.333 0.00 0.00 0.00 2.52
386 387 6.293190 CGATGCTATATAACCCGCAAAAAGAA 60.293 38.462 0.00 0.00 35.83 2.52
387 388 5.178623 CGATGCTATATAACCCGCAAAAAGA 59.821 40.000 0.00 0.00 35.83 2.52
388 389 5.178623 TCGATGCTATATAACCCGCAAAAAG 59.821 40.000 0.00 0.00 35.83 2.27
389 390 5.049954 GTCGATGCTATATAACCCGCAAAAA 60.050 40.000 0.00 0.00 35.83 1.94
390 391 4.449743 GTCGATGCTATATAACCCGCAAAA 59.550 41.667 0.00 0.00 35.83 2.44
391 392 3.991773 GTCGATGCTATATAACCCGCAAA 59.008 43.478 0.00 0.00 35.83 3.68
392 393 3.257375 AGTCGATGCTATATAACCCGCAA 59.743 43.478 0.00 0.00 35.83 4.85
393 394 2.823747 AGTCGATGCTATATAACCCGCA 59.176 45.455 0.00 0.00 36.75 5.69
394 395 3.119602 TCAGTCGATGCTATATAACCCGC 60.120 47.826 0.00 0.00 0.00 6.13
395 396 4.395231 TCTCAGTCGATGCTATATAACCCG 59.605 45.833 0.00 0.00 0.00 5.28
396 397 5.899120 TCTCAGTCGATGCTATATAACCC 57.101 43.478 0.00 0.00 0.00 4.11
397 398 7.219154 CGAATTCTCAGTCGATGCTATATAACC 59.781 40.741 3.52 0.00 43.25 2.85
398 399 7.751348 ACGAATTCTCAGTCGATGCTATATAAC 59.249 37.037 3.52 0.00 43.25 1.89
399 400 7.817641 ACGAATTCTCAGTCGATGCTATATAA 58.182 34.615 3.52 0.00 43.25 0.98
400 401 7.379098 ACGAATTCTCAGTCGATGCTATATA 57.621 36.000 3.52 0.00 43.25 0.86
401 402 6.260870 ACGAATTCTCAGTCGATGCTATAT 57.739 37.500 3.52 0.00 43.25 0.86
402 403 5.690997 ACGAATTCTCAGTCGATGCTATA 57.309 39.130 3.52 0.00 43.25 1.31
403 404 4.576216 ACGAATTCTCAGTCGATGCTAT 57.424 40.909 3.52 0.00 43.25 2.97
404 405 4.371855 AACGAATTCTCAGTCGATGCTA 57.628 40.909 3.52 0.00 43.25 3.49
405 406 2.949451 ACGAATTCTCAGTCGATGCT 57.051 45.000 3.52 0.00 43.25 3.79
406 407 4.563184 ACTTAACGAATTCTCAGTCGATGC 59.437 41.667 3.52 0.00 43.25 3.91
407 408 6.030849 AGACTTAACGAATTCTCAGTCGATG 58.969 40.000 3.52 0.00 43.25 3.84
408 409 6.127980 TGAGACTTAACGAATTCTCAGTCGAT 60.128 38.462 3.52 0.00 42.99 3.59
409 410 5.180680 TGAGACTTAACGAATTCTCAGTCGA 59.819 40.000 3.52 0.00 42.99 4.20
410 411 5.391449 TGAGACTTAACGAATTCTCAGTCG 58.609 41.667 3.52 0.00 42.99 4.18
414 415 5.180680 TCGACTGAGACTTAACGAATTCTCA 59.819 40.000 3.52 7.31 44.62 3.27
415 416 5.508922 GTCGACTGAGACTTAACGAATTCTC 59.491 44.000 8.70 0.00 40.24 2.87
416 417 5.392286 GTCGACTGAGACTTAACGAATTCT 58.608 41.667 8.70 0.00 38.09 2.40
417 418 5.667978 GTCGACTGAGACTTAACGAATTC 57.332 43.478 8.70 0.00 38.09 2.17
432 433 4.505922 GGATTGCTAAATCTCAGTCGACTG 59.494 45.833 34.76 34.76 41.74 3.51
433 434 4.404073 AGGATTGCTAAATCTCAGTCGACT 59.596 41.667 13.58 13.58 41.74 4.18
434 435 4.505922 CAGGATTGCTAAATCTCAGTCGAC 59.494 45.833 7.70 7.70 41.74 4.20
435 436 4.402474 TCAGGATTGCTAAATCTCAGTCGA 59.598 41.667 0.00 0.00 41.74 4.20
436 437 4.686972 TCAGGATTGCTAAATCTCAGTCG 58.313 43.478 0.00 0.00 41.74 4.18
437 438 6.523840 AGATCAGGATTGCTAAATCTCAGTC 58.476 40.000 0.00 0.00 41.74 3.51
438 439 6.099413 TGAGATCAGGATTGCTAAATCTCAGT 59.901 38.462 19.67 0.00 42.36 3.41
439 440 6.522946 TGAGATCAGGATTGCTAAATCTCAG 58.477 40.000 19.67 0.00 42.36 3.35
440 441 6.490241 TGAGATCAGGATTGCTAAATCTCA 57.510 37.500 19.67 19.67 44.00 3.27
441 442 6.765036 TGTTGAGATCAGGATTGCTAAATCTC 59.235 38.462 16.47 16.47 41.74 2.75
442 443 6.656902 TGTTGAGATCAGGATTGCTAAATCT 58.343 36.000 0.00 2.99 41.74 2.40
443 444 6.932356 TGTTGAGATCAGGATTGCTAAATC 57.068 37.500 0.00 0.00 41.37 2.17
444 445 7.114754 TCTTGTTGAGATCAGGATTGCTAAAT 58.885 34.615 0.00 0.00 0.00 1.40
445 446 6.475504 TCTTGTTGAGATCAGGATTGCTAAA 58.524 36.000 0.00 0.00 0.00 1.85
446 447 6.053632 TCTTGTTGAGATCAGGATTGCTAA 57.946 37.500 0.00 0.00 0.00 3.09
447 448 5.682234 TCTTGTTGAGATCAGGATTGCTA 57.318 39.130 0.00 0.00 0.00 3.49
448 449 4.564782 TCTTGTTGAGATCAGGATTGCT 57.435 40.909 0.00 0.00 0.00 3.91
449 450 5.050499 CGTATCTTGTTGAGATCAGGATTGC 60.050 44.000 0.00 0.00 44.04 3.56
450 451 5.464722 CCGTATCTTGTTGAGATCAGGATTG 59.535 44.000 0.00 0.00 44.04 2.67
451 452 5.453903 CCCGTATCTTGTTGAGATCAGGATT 60.454 44.000 0.00 0.00 44.04 3.01
452 453 4.039730 CCCGTATCTTGTTGAGATCAGGAT 59.960 45.833 0.00 0.00 44.04 3.24
453 454 3.384789 CCCGTATCTTGTTGAGATCAGGA 59.615 47.826 0.00 0.00 44.04 3.86
454 455 3.384789 TCCCGTATCTTGTTGAGATCAGG 59.615 47.826 0.00 0.00 44.04 3.86
455 456 4.655762 TCCCGTATCTTGTTGAGATCAG 57.344 45.455 0.00 0.00 44.04 2.90
456 457 4.141937 CCTTCCCGTATCTTGTTGAGATCA 60.142 45.833 0.00 0.00 44.04 2.92
457 458 4.372656 CCTTCCCGTATCTTGTTGAGATC 58.627 47.826 0.00 0.00 44.04 2.75
458 459 3.432326 GCCTTCCCGTATCTTGTTGAGAT 60.432 47.826 0.00 0.00 46.74 2.75
459 460 2.093658 GCCTTCCCGTATCTTGTTGAGA 60.094 50.000 0.00 0.00 39.13 3.27
460 461 2.280628 GCCTTCCCGTATCTTGTTGAG 58.719 52.381 0.00 0.00 0.00 3.02
461 462 1.065709 GGCCTTCCCGTATCTTGTTGA 60.066 52.381 0.00 0.00 0.00 3.18
462 463 1.339631 TGGCCTTCCCGTATCTTGTTG 60.340 52.381 3.32 0.00 35.87 3.33
463 464 0.988832 TGGCCTTCCCGTATCTTGTT 59.011 50.000 3.32 0.00 35.87 2.83
464 465 1.141053 GATGGCCTTCCCGTATCTTGT 59.859 52.381 3.32 0.00 35.87 3.16
465 466 1.417890 AGATGGCCTTCCCGTATCTTG 59.582 52.381 14.77 0.00 35.87 3.02
466 467 1.807814 AGATGGCCTTCCCGTATCTT 58.192 50.000 14.77 0.00 35.87 2.40
467 468 1.417890 CAAGATGGCCTTCCCGTATCT 59.582 52.381 14.77 4.38 35.87 1.98
468 469 1.416401 TCAAGATGGCCTTCCCGTATC 59.584 52.381 14.77 1.93 35.87 2.24
469 470 1.417890 CTCAAGATGGCCTTCCCGTAT 59.582 52.381 14.77 0.00 35.87 3.06
470 471 0.830648 CTCAAGATGGCCTTCCCGTA 59.169 55.000 14.77 0.00 35.87 4.02
471 472 0.909610 TCTCAAGATGGCCTTCCCGT 60.910 55.000 14.77 0.00 35.87 5.28
472 473 0.253044 TTCTCAAGATGGCCTTCCCG 59.747 55.000 14.77 6.77 35.87 5.14
473 474 2.025887 TCTTTCTCAAGATGGCCTTCCC 60.026 50.000 14.77 0.00 33.80 3.97
474 475 3.356529 TCTTTCTCAAGATGGCCTTCC 57.643 47.619 14.77 0.00 33.80 3.46
475 476 4.157472 CCTTTCTTTCTCAAGATGGCCTTC 59.843 45.833 10.66 10.66 38.89 3.46
476 477 4.085009 CCTTTCTTTCTCAAGATGGCCTT 58.915 43.478 3.32 0.00 38.89 4.35
477 478 3.331889 TCCTTTCTTTCTCAAGATGGCCT 59.668 43.478 3.32 0.00 38.89 5.19
478 479 3.441922 GTCCTTTCTTTCTCAAGATGGCC 59.558 47.826 0.00 0.00 38.89 5.36
479 480 3.441922 GGTCCTTTCTTTCTCAAGATGGC 59.558 47.826 0.00 0.00 38.89 4.40
480 481 4.699257 CAGGTCCTTTCTTTCTCAAGATGG 59.301 45.833 0.00 0.00 38.89 3.51
481 482 5.312079 ACAGGTCCTTTCTTTCTCAAGATG 58.688 41.667 0.00 0.00 38.89 2.90
482 483 5.574970 ACAGGTCCTTTCTTTCTCAAGAT 57.425 39.130 0.00 0.00 38.89 2.40
483 484 5.373812 AACAGGTCCTTTCTTTCTCAAGA 57.626 39.130 0.00 0.00 37.24 3.02
484 485 6.456795 AAAACAGGTCCTTTCTTTCTCAAG 57.543 37.500 0.00 0.00 0.00 3.02
485 486 6.037830 CGTAAAACAGGTCCTTTCTTTCTCAA 59.962 38.462 0.00 0.00 0.00 3.02
486 487 5.526111 CGTAAAACAGGTCCTTTCTTTCTCA 59.474 40.000 0.00 0.00 0.00 3.27
487 488 5.049612 CCGTAAAACAGGTCCTTTCTTTCTC 60.050 44.000 0.00 0.00 0.00 2.87
488 489 4.820173 CCGTAAAACAGGTCCTTTCTTTCT 59.180 41.667 0.00 0.00 0.00 2.52
489 490 4.023450 CCCGTAAAACAGGTCCTTTCTTTC 60.023 45.833 0.00 0.00 0.00 2.62
490 491 3.887110 CCCGTAAAACAGGTCCTTTCTTT 59.113 43.478 0.00 0.00 0.00 2.52
491 492 3.136992 TCCCGTAAAACAGGTCCTTTCTT 59.863 43.478 0.00 0.00 0.00 2.52
492 493 2.707257 TCCCGTAAAACAGGTCCTTTCT 59.293 45.455 0.00 0.00 0.00 2.52
493 494 3.130280 TCCCGTAAAACAGGTCCTTTC 57.870 47.619 0.00 0.00 0.00 2.62
494 495 3.801307 ATCCCGTAAAACAGGTCCTTT 57.199 42.857 0.00 0.00 0.00 3.11
495 496 3.329814 AGAATCCCGTAAAACAGGTCCTT 59.670 43.478 0.00 0.00 0.00 3.36
496 497 2.910977 AGAATCCCGTAAAACAGGTCCT 59.089 45.455 0.00 0.00 0.00 3.85
497 498 3.007635 CAGAATCCCGTAAAACAGGTCC 58.992 50.000 0.00 0.00 0.00 4.46
498 499 3.934068 TCAGAATCCCGTAAAACAGGTC 58.066 45.455 0.00 0.00 0.00 3.85
499 500 4.202430 ACTTCAGAATCCCGTAAAACAGGT 60.202 41.667 0.00 0.00 0.00 4.00
500 501 4.324267 ACTTCAGAATCCCGTAAAACAGG 58.676 43.478 0.00 0.00 0.00 4.00
501 502 4.994852 TGACTTCAGAATCCCGTAAAACAG 59.005 41.667 0.00 0.00 0.00 3.16
502 503 4.963373 TGACTTCAGAATCCCGTAAAACA 58.037 39.130 0.00 0.00 0.00 2.83
503 504 5.934935 TTGACTTCAGAATCCCGTAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
515 516 8.397906 CAACTGTTCTTGTAAATTGACTTCAGA 58.602 33.333 0.00 0.00 0.00 3.27
516 517 8.397906 TCAACTGTTCTTGTAAATTGACTTCAG 58.602 33.333 0.00 0.00 0.00 3.02
518 519 9.226345 CTTCAACTGTTCTTGTAAATTGACTTC 57.774 33.333 0.00 0.00 0.00 3.01
537 549 4.394729 TGCGGAAAAATACCTCTTCAACT 58.605 39.130 0.00 0.00 0.00 3.16
539 551 4.825085 AGTTGCGGAAAAATACCTCTTCAA 59.175 37.500 0.00 0.00 0.00 2.69
557 569 2.341318 AAAATAACCGCCGAAGTTGC 57.659 45.000 0.00 0.00 0.00 4.17
559 571 4.628766 GTCTCTAAAATAACCGCCGAAGTT 59.371 41.667 0.00 0.00 0.00 2.66
560 572 4.179298 GTCTCTAAAATAACCGCCGAAGT 58.821 43.478 0.00 0.00 0.00 3.01
561 573 3.242248 CGTCTCTAAAATAACCGCCGAAG 59.758 47.826 0.00 0.00 0.00 3.79
562 574 3.181397 CGTCTCTAAAATAACCGCCGAA 58.819 45.455 0.00 0.00 0.00 4.30
563 575 2.164219 ACGTCTCTAAAATAACCGCCGA 59.836 45.455 0.00 0.00 0.00 5.54
601 613 2.470628 CGATGAGCTTACGAATCTGCAG 59.529 50.000 7.63 7.63 0.00 4.41
631 655 4.520846 GCATCCGACGGCGCAAAG 62.521 66.667 19.49 1.82 35.83 2.77
673 697 1.646367 GGGCCTAAGGGGAGGAAAGG 61.646 65.000 0.84 0.00 39.15 3.11
687 711 2.033602 CGGAACCGAAAAGGGCCT 59.966 61.111 0.00 0.00 46.96 5.19
688 712 1.457823 AAACGGAACCGAAAAGGGCC 61.458 55.000 20.14 0.00 46.96 5.80
689 713 0.318360 CAAACGGAACCGAAAAGGGC 60.318 55.000 20.14 0.00 46.96 5.19
690 714 1.265905 CTCAAACGGAACCGAAAAGGG 59.734 52.381 20.14 3.16 46.96 3.95
692 716 1.944709 ACCTCAAACGGAACCGAAAAG 59.055 47.619 20.14 10.48 42.83 2.27
693 717 2.041251 ACCTCAAACGGAACCGAAAA 57.959 45.000 20.14 1.89 42.83 2.29
694 718 2.041251 AACCTCAAACGGAACCGAAA 57.959 45.000 20.14 1.56 42.83 3.46
695 719 1.671845 CAAACCTCAAACGGAACCGAA 59.328 47.619 20.14 1.89 42.83 4.30
696 720 1.134461 TCAAACCTCAAACGGAACCGA 60.134 47.619 20.14 0.00 42.83 4.69
697 721 1.003223 GTCAAACCTCAAACGGAACCG 60.003 52.381 11.83 11.83 46.03 4.44
1460 1555 1.293924 CAGCCGAAGATCGAAATGCT 58.706 50.000 0.58 0.00 43.74 3.79
1493 1591 2.986479 CACTTAAAACGGCCAAAGCATC 59.014 45.455 2.24 0.00 42.56 3.91
1498 1600 3.018149 ACAGTCACTTAAAACGGCCAAA 58.982 40.909 2.24 0.00 0.00 3.28
1541 1646 0.467290 TCAACCAAGCCAACCCACTC 60.467 55.000 0.00 0.00 0.00 3.51
1548 1653 1.733402 CGCCAAGTCAACCAAGCCAA 61.733 55.000 0.00 0.00 0.00 4.52
1569 1674 9.809096 TCTGCTAGATCAGTAAATAACTTTGAG 57.191 33.333 0.00 0.00 35.76 3.02
1679 1785 2.027745 TGAAGGAGACCACAGCTGAATC 60.028 50.000 23.35 14.12 0.00 2.52
1751 1857 4.737855 TCACATGAAGTAGGAACTAGCC 57.262 45.455 0.00 0.00 44.14 3.93
1756 1862 6.560253 ACAACAATCACATGAAGTAGGAAC 57.440 37.500 0.00 0.00 0.00 3.62
1779 1885 2.039787 TGGGTCATCCACGGGCTA 59.960 61.111 0.00 0.00 41.46 3.93
1877 1983 3.055530 AGGTGCACTATCCAACTCAAGAG 60.056 47.826 17.98 0.00 0.00 2.85
1878 1984 2.906389 AGGTGCACTATCCAACTCAAGA 59.094 45.455 17.98 0.00 0.00 3.02
1887 1993 1.202348 GCAAACCAAGGTGCACTATCC 59.798 52.381 17.98 0.00 40.58 2.59
2001 2107 5.125417 GGCAGGTGTATTAAATTCAGAAGCA 59.875 40.000 0.00 0.00 0.00 3.91
2029 2135 4.560819 GTCGCACACTCTTCTTCTATTCAG 59.439 45.833 0.00 0.00 0.00 3.02
2085 2191 6.094464 TGGATGAAGCAACAGAAATATCACAG 59.906 38.462 0.00 0.00 0.00 3.66
2087 2193 6.127925 TGTGGATGAAGCAACAGAAATATCAC 60.128 38.462 0.00 0.00 0.00 3.06
2144 2250 8.827599 CGAAGCGTGTATGCAAAATAAATATAC 58.172 33.333 0.00 0.00 37.31 1.47
2146 2252 7.414436 ACGAAGCGTGTATGCAAAATAAATAT 58.586 30.769 0.00 0.00 39.18 1.28
2149 2255 5.037015 ACGAAGCGTGTATGCAAAATAAA 57.963 34.783 0.00 0.00 39.18 1.40
2150 2256 4.671880 ACGAAGCGTGTATGCAAAATAA 57.328 36.364 0.00 0.00 39.18 1.40
2170 2276 6.589907 ACAAAAACATGACAAGGTGAGAAAAC 59.410 34.615 0.00 0.00 0.00 2.43
2173 2279 5.913137 ACAAAAACATGACAAGGTGAGAA 57.087 34.783 0.00 0.00 0.00 2.87
2273 2379 2.561569 ACAAACGGCAGGTATAGATGC 58.438 47.619 1.23 1.23 41.80 3.91
2376 2485 7.047891 TCTCTACCATAAATCTGAATGCGTTT 58.952 34.615 0.00 0.00 0.00 3.60
2408 2517 9.823647 GTTCCTCATGATAGAATACAAGAAAGA 57.176 33.333 10.53 0.00 0.00 2.52
2590 2700 4.761227 TCAGAATGTTTTCATGCAGTGCTA 59.239 37.500 17.60 3.01 40.79 3.49
2685 2829 9.108284 CCAATTTTGTTAAACTTGGTCAGAAAT 57.892 29.630 12.57 0.00 32.81 2.17
2705 2849 1.608590 CACGCCTGAGTGTTCCAATTT 59.391 47.619 0.00 0.00 37.35 1.82
2707 2851 2.932663 CACGCCTGAGTGTTCCAAT 58.067 52.632 0.00 0.00 37.35 3.16
2769 2913 1.136695 ACAATTTGGTGGTGCTGTGTG 59.863 47.619 0.78 0.00 0.00 3.82
2892 3038 6.710744 ACATATGAAGAACCGTTGAGAAAAGT 59.289 34.615 10.38 0.00 0.00 2.66
3113 3260 9.076781 TCAAAAATGTATTTGAGAATGGAGTGA 57.923 29.630 0.00 0.00 42.68 3.41
3370 3523 3.798202 ACGAGACTGAAGAGCAACTTTT 58.202 40.909 0.00 0.00 39.13 2.27
3371 3524 3.460857 ACGAGACTGAAGAGCAACTTT 57.539 42.857 0.00 0.00 39.13 2.66
3978 4131 4.130118 CAAGAGAGTGTACAAGCCACTTT 58.870 43.478 0.00 0.00 43.00 2.66
4021 4174 1.557832 CCCTTTTCGGAGTGATACCCA 59.442 52.381 0.00 0.00 33.16 4.51
4305 4458 5.909621 AGACATCAGCAAGCATATTTGTT 57.090 34.783 0.00 0.00 0.00 2.83
4329 4482 3.616317 GCGGAATTTGCTGTACCCAAAAT 60.616 43.478 11.34 5.06 35.97 1.82
4349 4502 7.110179 AGTGTTCTTCATCATAAATATCGCG 57.890 36.000 0.00 0.00 0.00 5.87
4416 4569 3.498397 ACGCTCCATTATAAAATCAGGCG 59.502 43.478 14.48 14.48 38.21 5.52
4497 4650 7.330946 TCGGAAGAACAACATCTTTGTAGTATG 59.669 37.037 0.00 0.00 39.70 2.39
4548 4701 6.697019 CGAAGTGACAAGTGATTTGGATTTTT 59.303 34.615 0.00 0.00 41.25 1.94
4549 4702 6.208644 CGAAGTGACAAGTGATTTGGATTTT 58.791 36.000 0.00 0.00 41.25 1.82
4620 4773 4.420168 ACACGGCAAAACATATGCATAAC 58.580 39.130 11.13 0.00 45.60 1.89
4750 4907 9.173021 TCGAATGTATCTTTTATGTTGGTTCAT 57.827 29.630 0.00 0.00 0.00 2.57
4838 4995 5.047802 CCATGCATGGGAATATACTTTCCAC 60.048 44.000 34.31 0.00 45.89 4.02
4972 5161 6.952358 AGTGTATACGTATGATCCCCACTAAT 59.048 38.462 18.37 0.00 0.00 1.73
4973 5162 6.309357 AGTGTATACGTATGATCCCCACTAA 58.691 40.000 18.37 0.00 0.00 2.24
4974 5163 5.884322 AGTGTATACGTATGATCCCCACTA 58.116 41.667 18.37 0.00 0.00 2.74
4975 5164 4.737578 AGTGTATACGTATGATCCCCACT 58.262 43.478 18.37 14.81 0.00 4.00
4994 5183 1.614241 AATTCCGGACGGAGGGAGTG 61.614 60.000 13.64 0.00 46.06 3.51
5062 5251 4.142600 GCTGGAATTAGTTGACGCTCAAAT 60.143 41.667 6.10 6.10 38.22 2.32
5083 5272 1.207791 AAATCCGACATCCTCAGGCT 58.792 50.000 0.00 0.00 0.00 4.58
5085 5274 2.609459 CGAAAAATCCGACATCCTCAGG 59.391 50.000 0.00 0.00 0.00 3.86
5087 5276 3.328382 ACGAAAAATCCGACATCCTCA 57.672 42.857 0.00 0.00 0.00 3.86
5093 5282 6.347888 GGAAGTGAATAACGAAAAATCCGACA 60.348 38.462 0.00 0.00 0.00 4.35
5160 5349 6.444171 AGGTCCATAACTAAGGCTAGAAGTTT 59.556 38.462 13.07 2.45 35.23 2.66
5334 5943 7.427989 AGGGATGCAAATTGATTGTTCTTAT 57.572 32.000 0.00 0.00 41.32 1.73
5420 6029 0.329596 GGTGAAGAGATGCCCCAACT 59.670 55.000 0.00 0.00 0.00 3.16
5466 6075 6.238648 CCAGTTTCCAGTGTAAGAAGGTATT 58.761 40.000 0.00 0.00 0.00 1.89
5524 6649 3.964031 TGGTTATGGCACCTTTGAAAGTT 59.036 39.130 4.02 0.00 37.75 2.66
5525 6650 3.571590 TGGTTATGGCACCTTTGAAAGT 58.428 40.909 4.02 0.00 37.75 2.66
5669 6794 7.780271 ACTAGGTCTTCTGTTTTCATTTTCCTT 59.220 33.333 0.00 0.00 0.00 3.36
5721 6846 4.481368 AAACAGCAGTATCCGGATACAA 57.519 40.909 41.67 18.15 44.58 2.41
5723 6848 4.189231 ACAAAACAGCAGTATCCGGATAC 58.811 43.478 37.10 37.10 42.96 2.24
5728 6853 1.393539 CCGACAAAACAGCAGTATCCG 59.606 52.381 0.00 0.00 0.00 4.18
5803 6942 1.467920 CCTTGCCAGTTCATCCCTTC 58.532 55.000 0.00 0.00 0.00 3.46
5900 7039 3.423996 TCCAAAGTGGCAACGTTAAAC 57.576 42.857 0.00 0.00 37.47 2.01
6197 7336 3.095922 GGGGGAAATCATGACCGAC 57.904 57.895 0.00 0.00 0.00 4.79
6213 7352 6.253946 AGTACATCTAGATTCTTTTGGGGG 57.746 41.667 1.33 0.00 0.00 5.40
6214 7353 7.497249 CAGAAGTACATCTAGATTCTTTTGGGG 59.503 40.741 1.33 0.00 0.00 4.96
6215 7354 8.260818 TCAGAAGTACATCTAGATTCTTTTGGG 58.739 37.037 20.08 6.75 0.00 4.12
6216 7355 9.658799 TTCAGAAGTACATCTAGATTCTTTTGG 57.341 33.333 20.08 7.27 0.00 3.28
6235 7695 5.734720 ACATGGGTAGTGTACATTCAGAAG 58.265 41.667 0.00 0.00 0.00 2.85
6559 8021 2.325583 AACTTCAGGAACAGTCGCAA 57.674 45.000 0.00 0.00 0.00 4.85
7012 8474 2.372504 GGCCTTATTACCTTCCCTCTCC 59.627 54.545 0.00 0.00 0.00 3.71
7038 8500 7.777910 TGGACATTTCCCGTTCATTCTTATAAT 59.222 33.333 0.00 0.00 42.01 1.28
7116 8578 5.409826 AGAGTTTCACTAACATGCTAACAGC 59.590 40.000 0.00 0.00 39.43 4.40
7146 8612 7.442062 ACCAAAAATGTGCTGAAGAAATAAAGG 59.558 33.333 0.00 0.00 0.00 3.11
7169 8635 1.913951 CTGGGCAGAGCATGGTACCA 61.914 60.000 18.99 18.99 0.00 3.25
7171 8637 0.035056 AACTGGGCAGAGCATGGTAC 60.035 55.000 0.00 0.00 0.00 3.34
7172 8638 0.698238 AAACTGGGCAGAGCATGGTA 59.302 50.000 0.00 0.00 0.00 3.25
7173 8639 0.610232 GAAACTGGGCAGAGCATGGT 60.610 55.000 0.00 0.00 0.00 3.55
7220 8687 5.287674 ACATGTAGATCATCAAGACCCTG 57.712 43.478 0.00 0.00 34.09 4.45
7304 8771 1.338020 CCAGAGGCCAAATAAATCGCC 59.662 52.381 5.01 0.00 41.96 5.54
7307 8774 6.721704 ATCTTTCCAGAGGCCAAATAAATC 57.278 37.500 5.01 0.00 30.36 2.17
7449 8917 4.142182 ACCCATATGAAATTCCAAAGCGTG 60.142 41.667 3.65 0.00 0.00 5.34
7451 8919 4.654091 ACCCATATGAAATTCCAAAGCG 57.346 40.909 3.65 0.00 0.00 4.68
7472 8943 8.613482 TCAACAATGTGTCGTTTTAGAACAATA 58.387 29.630 0.00 0.00 35.44 1.90
7531 9002 8.537016 ACTTCACTATAGGTGCAAACACTATAA 58.463 33.333 4.43 0.00 46.57 0.98
7597 9068 7.202001 CCATACAAGTATCTTCTGTGTCCCATA 60.202 40.741 0.00 0.00 0.00 2.74
7761 9232 5.359576 AGGCATGACTAAAGACTACAGAGAG 59.640 44.000 0.00 0.00 0.00 3.20
7787 9259 5.122239 TGACTTCCATCTGCATAAAAACGAG 59.878 40.000 0.00 0.00 0.00 4.18
7973 9448 6.034044 CAGAGAAATACGTTAGTTCACTGAGC 59.966 42.308 19.04 0.00 46.71 4.26
8108 9589 1.001641 GAGGCATCCCTGTTGCTGT 60.002 57.895 0.00 0.00 43.12 4.40
8109 9590 1.001764 TGAGGCATCCCTGTTGCTG 60.002 57.895 0.00 0.00 43.12 4.41
8110 9591 1.203441 TCTGAGGCATCCCTGTTGCT 61.203 55.000 0.00 0.00 43.12 3.91
8111 9592 0.106819 ATCTGAGGCATCCCTGTTGC 60.107 55.000 0.00 0.00 43.12 4.17
8112 9593 2.295885 GAATCTGAGGCATCCCTGTTG 58.704 52.381 0.00 0.00 43.12 3.33
8155 9646 6.678878 TGGTATGTGTTAGATCTAATCGCTC 58.321 40.000 17.95 5.86 0.00 5.03
8236 9727 2.692024 TGTACAAGGGGGACACTACAA 58.308 47.619 0.00 0.00 0.00 2.41
8237 9728 2.402182 TGTACAAGGGGGACACTACA 57.598 50.000 0.00 0.00 0.00 2.74
8244 9735 0.548926 TGAGCCATGTACAAGGGGGA 60.549 55.000 18.34 0.00 0.00 4.81
8353 9844 5.505654 CGGTAAACAAGACAGAAACAATGCT 60.506 40.000 0.00 0.00 0.00 3.79
8387 9878 4.657039 AGTTACAACTTACAACAGAGGGGA 59.343 41.667 0.00 0.00 35.21 4.81
8430 9921 5.593095 ACGTTTGCTCCATACAGAGATAGTA 59.407 40.000 0.00 0.00 35.82 1.82
8431 9922 4.402793 ACGTTTGCTCCATACAGAGATAGT 59.597 41.667 0.00 0.00 35.82 2.12
8432 9923 4.938080 ACGTTTGCTCCATACAGAGATAG 58.062 43.478 0.00 0.00 35.82 2.08
8562 10060 2.708051 ACTCAACTGATCATGCACCAG 58.292 47.619 0.00 0.00 0.00 4.00
8600 10109 5.610398 TGCTGTGAACTGATCTGTTTTAGA 58.390 37.500 17.78 9.08 40.37 2.10
8609 10118 8.375608 ACAAGATATATTGCTGTGAACTGATC 57.624 34.615 9.97 0.00 33.28 2.92
8613 10122 8.340618 ACAAACAAGATATATTGCTGTGAACT 57.659 30.769 14.35 0.00 31.74 3.01
8617 10126 9.874215 CATAGACAAACAAGATATATTGCTGTG 57.126 33.333 18.13 12.42 32.59 3.66
8690 10203 3.420606 CTGCTGACACTGCTGCCG 61.421 66.667 0.00 0.00 32.49 5.69
8795 10497 1.001406 CTGTTCGACTGCTCTCCCTTT 59.999 52.381 0.00 0.00 0.00 3.11
8808 10510 3.131396 GTTTCAAGAGAAGGCTGTTCGA 58.869 45.455 0.00 0.00 34.71 3.71
8809 10511 2.224314 GGTTTCAAGAGAAGGCTGTTCG 59.776 50.000 0.00 0.00 34.71 3.95
8813 10896 1.160137 CCGGTTTCAAGAGAAGGCTG 58.840 55.000 0.00 0.00 34.71 4.85
8829 10912 1.336887 CGAATGACTATACCAGCCCGG 60.337 57.143 0.00 0.00 42.50 5.73
8911 10997 0.905809 TAGGCTGGAGCGTACCCAAA 60.906 55.000 0.00 0.00 43.26 3.28
8912 10998 1.305465 TAGGCTGGAGCGTACCCAA 60.305 57.895 0.00 0.00 43.26 4.12
8913 10999 1.756950 CTAGGCTGGAGCGTACCCA 60.757 63.158 0.00 0.00 43.26 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.