Multiple sequence alignment - TraesCS1D01G283000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G283000 chr1D 100.000 4422 0 0 1 4422 381017551 381021972 0.000000e+00 8167.0
1 TraesCS1D01G283000 chr1D 78.105 1119 187 42 1899 3000 379912116 379911039 0.000000e+00 656.0
2 TraesCS1D01G283000 chr1D 96.875 64 2 0 3926 3989 381021392 381021455 1.680000e-19 108.0
3 TraesCS1D01G283000 chr1D 96.875 64 2 0 3842 3905 381021476 381021539 1.680000e-19 108.0
4 TraesCS1D01G283000 chr1D 94.737 57 2 1 3900 3956 430664183 430664128 2.190000e-13 87.9
5 TraesCS1D01G283000 chr1B 92.621 3659 165 55 61 3659 510807403 510811016 0.000000e+00 5164.0
6 TraesCS1D01G283000 chr1B 77.489 1115 201 32 1899 3000 509902455 509901378 1.350000e-174 623.0
7 TraesCS1D01G283000 chr1B 80.300 467 67 16 3958 4421 510811650 510812094 3.300000e-86 329.0
8 TraesCS1D01G283000 chr1A 91.101 3551 201 45 196 3662 481672636 481676155 0.000000e+00 4700.0
9 TraesCS1D01G283000 chr1A 77.946 1120 187 41 1899 3000 480935277 480934200 0.000000e+00 645.0
10 TraesCS1D01G283000 chr1A 86.777 121 8 3 4302 4422 481686390 481686502 1.290000e-25 128.0
11 TraesCS1D01G283000 chr3D 83.700 1000 131 22 2011 3000 465027150 465026173 0.000000e+00 915.0
12 TraesCS1D01G283000 chr3D 79.203 1255 191 48 2011 3247 464808955 464807753 0.000000e+00 808.0
13 TraesCS1D01G283000 chr3D 83.636 385 61 2 1500 1883 465027850 465027467 1.170000e-95 361.0
14 TraesCS1D01G283000 chr3D 82.635 167 24 5 1482 1645 464810272 464810108 4.610000e-30 143.0
15 TraesCS1D01G283000 chr3D 96.552 58 2 0 3900 3957 579255937 579255994 3.640000e-16 97.1
16 TraesCS1D01G283000 chr3D 95.000 60 1 1 3900 3959 608045968 608045911 4.710000e-15 93.5
17 TraesCS1D01G283000 chr3D 94.828 58 2 1 3900 3957 539350737 539350681 6.090000e-14 89.8
18 TraesCS1D01G283000 chr3B 80.509 1257 177 49 2011 3249 618442173 618440967 0.000000e+00 902.0
19 TraesCS1D01G283000 chr3B 82.597 385 65 2 1500 1883 618442878 618442495 5.480000e-89 339.0
20 TraesCS1D01G283000 chr3B 74.168 511 116 13 1501 2003 597545462 597545964 9.700000e-47 198.0
21 TraesCS1D01G283000 chr3B 82.036 167 25 5 1482 1645 618157116 618156952 2.150000e-28 137.0
22 TraesCS1D01G283000 chr3A 83.317 1001 133 23 2011 3000 608347363 608346386 0.000000e+00 893.0
23 TraesCS1D01G283000 chr3A 80.459 1003 155 25 2011 3000 608195753 608194779 0.000000e+00 728.0
24 TraesCS1D01G283000 chr3A 83.377 385 62 2 1500 1883 608348068 608347685 5.440000e-94 355.0
25 TraesCS1D01G283000 chr3A 74.560 511 114 13 1501 2003 596794327 596794829 4.480000e-50 209.0
26 TraesCS1D01G283000 chr3A 89.189 74 4 4 3900 3971 745296362 745296433 6.090000e-14 89.8
27 TraesCS1D01G283000 chr2B 76.869 1003 194 28 2011 3000 232290698 232289721 2.340000e-147 532.0
28 TraesCS1D01G283000 chr2B 76.214 1009 190 37 2011 3000 232262133 232263110 5.140000e-134 488.0
29 TraesCS1D01G283000 chr2B 76.842 285 47 15 3956 4224 674738362 674738643 4.610000e-30 143.0
30 TraesCS1D01G283000 chr2D 76.747 1002 197 26 2011 3000 165484722 165483745 1.090000e-145 527.0
31 TraesCS1D01G283000 chr2D 76.395 466 86 19 2011 2463 165334256 165334710 3.440000e-56 230.0
32 TraesCS1D01G283000 chr2D 86.250 80 6 4 3 82 59466878 59466804 1.020000e-11 82.4
33 TraesCS1D01G283000 chr4B 76.115 1009 179 41 2011 3000 445229989 445230954 5.180000e-129 472.0
34 TraesCS1D01G283000 chr2A 77.883 529 103 11 1482 2003 185264917 185265438 2.570000e-82 316.0
35 TraesCS1D01G283000 chr2A 91.667 60 5 0 3 62 107183803 107183862 2.830000e-12 84.2
36 TraesCS1D01G283000 chr2A 91.667 60 5 0 3 62 670308709 670308768 2.830000e-12 84.2
37 TraesCS1D01G283000 chr5A 75.978 358 72 13 1501 1851 19542008 19541658 5.880000e-39 172.0
38 TraesCS1D01G283000 chr5A 94.915 59 2 1 3900 3957 515328432 515328490 1.690000e-14 91.6
39 TraesCS1D01G283000 chr5A 93.333 60 4 0 3 62 362159337 362159278 6.090000e-14 89.8
40 TraesCS1D01G283000 chr7D 93.846 65 4 0 3 67 117242112 117242048 1.010000e-16 99.0
41 TraesCS1D01G283000 chr7D 96.364 55 1 1 3900 3954 589019755 589019808 6.090000e-14 89.8
42 TraesCS1D01G283000 chr7D 93.220 59 4 0 6 64 44291900 44291842 2.190000e-13 87.9
43 TraesCS1D01G283000 chrUn 93.333 60 4 0 1 60 29525859 29525800 6.090000e-14 89.8
44 TraesCS1D01G283000 chr7A 98.039 51 1 0 3900 3950 305430449 305430499 6.090000e-14 89.8
45 TraesCS1D01G283000 chr4D 93.103 58 4 0 3 60 54056547 54056604 7.880000e-13 86.1
46 TraesCS1D01G283000 chr4D 78.846 104 22 0 3956 4059 3324394 3324497 2.210000e-08 71.3
47 TraesCS1D01G283000 chr4D 75.000 176 22 17 3956 4119 503964141 503964306 1.330000e-05 62.1
48 TraesCS1D01G283000 chr7B 89.062 64 7 0 3 66 49028361 49028298 3.670000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G283000 chr1D 381017551 381021972 4421 False 2794.333333 8167 97.916667 1 4422 3 chr1D.!!$F1 4421
1 TraesCS1D01G283000 chr1D 379911039 379912116 1077 True 656.000000 656 78.105000 1899 3000 1 chr1D.!!$R1 1101
2 TraesCS1D01G283000 chr1B 510807403 510812094 4691 False 2746.500000 5164 86.460500 61 4421 2 chr1B.!!$F1 4360
3 TraesCS1D01G283000 chr1B 509901378 509902455 1077 True 623.000000 623 77.489000 1899 3000 1 chr1B.!!$R1 1101
4 TraesCS1D01G283000 chr1A 481672636 481676155 3519 False 4700.000000 4700 91.101000 196 3662 1 chr1A.!!$F1 3466
5 TraesCS1D01G283000 chr1A 480934200 480935277 1077 True 645.000000 645 77.946000 1899 3000 1 chr1A.!!$R1 1101
6 TraesCS1D01G283000 chr3D 465026173 465027850 1677 True 638.000000 915 83.668000 1500 3000 2 chr3D.!!$R4 1500
7 TraesCS1D01G283000 chr3D 464807753 464810272 2519 True 475.500000 808 80.919000 1482 3247 2 chr3D.!!$R3 1765
8 TraesCS1D01G283000 chr3B 618440967 618442878 1911 True 620.500000 902 81.553000 1500 3249 2 chr3B.!!$R2 1749
9 TraesCS1D01G283000 chr3A 608194779 608195753 974 True 728.000000 728 80.459000 2011 3000 1 chr3A.!!$R1 989
10 TraesCS1D01G283000 chr3A 608346386 608348068 1682 True 624.000000 893 83.347000 1500 3000 2 chr3A.!!$R2 1500
11 TraesCS1D01G283000 chr3A 596794327 596794829 502 False 209.000000 209 74.560000 1501 2003 1 chr3A.!!$F1 502
12 TraesCS1D01G283000 chr2B 232289721 232290698 977 True 532.000000 532 76.869000 2011 3000 1 chr2B.!!$R1 989
13 TraesCS1D01G283000 chr2B 232262133 232263110 977 False 488.000000 488 76.214000 2011 3000 1 chr2B.!!$F1 989
14 TraesCS1D01G283000 chr2D 165483745 165484722 977 True 527.000000 527 76.747000 2011 3000 1 chr2D.!!$R2 989
15 TraesCS1D01G283000 chr4B 445229989 445230954 965 False 472.000000 472 76.115000 2011 3000 1 chr4B.!!$F1 989
16 TraesCS1D01G283000 chr2A 185264917 185265438 521 False 316.000000 316 77.883000 1482 2003 1 chr2A.!!$F2 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.107410 ACAAAGGCAACCACTGTCGA 60.107 50.000 0.00 0.0 33.6 4.20 F
937 1019 0.773644 GGGCCCCACTCATCATACAT 59.226 55.000 12.23 0.0 0.0 2.29 F
1271 1373 0.598065 GTGAAATCCCTGCGCAAACT 59.402 50.000 13.05 0.0 0.0 2.66 F
3014 3973 1.067974 CCAGGTCCGTTCGCACATATA 59.932 52.381 0.00 0.0 0.0 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1206 1297 0.901827 AGCCGGACACATGTACATCA 59.098 50.0 5.05 0.0 0.0 3.07 R
2381 3316 0.667487 CGCTGGTGTCGTTGATCTGT 60.667 55.0 0.00 0.0 0.0 3.41 R
3110 4075 0.322456 TGAACCATACACCTGCCAGC 60.322 55.0 0.00 0.0 0.0 4.85 R
3983 5386 0.035458 CTCAACCACCCTCCACTGTC 59.965 60.0 0.00 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.962964 TTTATGTCACTTGACTAAGACTTGG 57.037 36.000 10.63 0.00 44.99 3.61
26 27 5.552870 ATGTCACTTGACTAAGACTTGGT 57.447 39.130 3.54 3.54 44.99 3.67
27 28 5.353394 TGTCACTTGACTAAGACTTGGTT 57.647 39.130 5.60 0.00 44.99 3.67
28 29 6.474140 TGTCACTTGACTAAGACTTGGTTA 57.526 37.500 5.60 0.00 44.99 2.85
29 30 6.880484 TGTCACTTGACTAAGACTTGGTTAA 58.120 36.000 5.60 7.15 44.99 2.01
30 31 7.332557 TGTCACTTGACTAAGACTTGGTTAAA 58.667 34.615 5.60 3.65 44.99 1.52
31 32 7.990886 TGTCACTTGACTAAGACTTGGTTAAAT 59.009 33.333 5.60 0.00 44.99 1.40
32 33 8.496751 GTCACTTGACTAAGACTTGGTTAAATC 58.503 37.037 5.60 0.00 41.65 2.17
33 34 8.429641 TCACTTGACTAAGACTTGGTTAAATCT 58.570 33.333 5.60 0.00 37.36 2.40
34 35 8.713271 CACTTGACTAAGACTTGGTTAAATCTC 58.287 37.037 5.60 0.00 37.36 2.75
35 36 8.429641 ACTTGACTAAGACTTGGTTAAATCTCA 58.570 33.333 5.60 0.00 37.36 3.27
36 37 9.273016 CTTGACTAAGACTTGGTTAAATCTCAA 57.727 33.333 5.60 3.22 35.92 3.02
37 38 9.793259 TTGACTAAGACTTGGTTAAATCTCAAT 57.207 29.630 5.60 0.00 0.00 2.57
38 39 9.436957 TGACTAAGACTTGGTTAAATCTCAATC 57.563 33.333 5.60 0.00 0.00 2.67
39 40 8.480643 ACTAAGACTTGGTTAAATCTCAATCG 57.519 34.615 0.00 0.00 0.00 3.34
40 41 8.311836 ACTAAGACTTGGTTAAATCTCAATCGA 58.688 33.333 0.00 0.00 0.00 3.59
41 42 6.969828 AGACTTGGTTAAATCTCAATCGAC 57.030 37.500 0.00 0.00 0.00 4.20
42 43 6.702329 AGACTTGGTTAAATCTCAATCGACT 58.298 36.000 0.00 0.00 0.00 4.18
43 44 6.591834 AGACTTGGTTAAATCTCAATCGACTG 59.408 38.462 0.00 0.00 0.00 3.51
44 45 6.464222 ACTTGGTTAAATCTCAATCGACTGA 58.536 36.000 0.00 0.00 0.00 3.41
45 46 6.591834 ACTTGGTTAAATCTCAATCGACTGAG 59.408 38.462 17.55 17.55 43.62 3.35
53 54 5.312120 TCTCAATCGACTGAGACCTAAAC 57.688 43.478 21.83 0.00 45.45 2.01
54 55 4.765339 TCTCAATCGACTGAGACCTAAACA 59.235 41.667 21.83 0.00 45.45 2.83
55 56 4.806330 TCAATCGACTGAGACCTAAACAC 58.194 43.478 0.00 0.00 0.00 3.32
56 57 4.279922 TCAATCGACTGAGACCTAAACACA 59.720 41.667 0.00 0.00 0.00 3.72
57 58 3.637998 TCGACTGAGACCTAAACACAC 57.362 47.619 0.00 0.00 0.00 3.82
58 59 2.295349 TCGACTGAGACCTAAACACACC 59.705 50.000 0.00 0.00 0.00 4.16
59 60 2.609737 CGACTGAGACCTAAACACACCC 60.610 54.545 0.00 0.00 0.00 4.61
96 97 2.143876 AGAACAAAGGCAACCACTGT 57.856 45.000 0.00 0.00 37.17 3.55
98 99 0.738389 AACAAAGGCAACCACTGTCG 59.262 50.000 0.00 0.00 33.60 4.35
99 100 0.107410 ACAAAGGCAACCACTGTCGA 60.107 50.000 0.00 0.00 33.60 4.20
100 101 1.021202 CAAAGGCAACCACTGTCGAA 58.979 50.000 0.00 0.00 33.60 3.71
110 112 2.631062 ACCACTGTCGAACCATACAAGA 59.369 45.455 0.00 0.00 0.00 3.02
127 129 9.663904 CCATACAAGATATGAAATTAACGGTTG 57.336 33.333 3.07 0.00 0.00 3.77
129 131 7.151999 ACAAGATATGAAATTAACGGTTGCA 57.848 32.000 3.07 0.00 0.00 4.08
138 140 2.605837 TAACGGTTGCAACTGAGTCA 57.394 45.000 38.38 19.78 38.65 3.41
149 151 3.555956 GCAACTGAGTCAACTTCTTTCGA 59.444 43.478 0.00 0.00 0.00 3.71
158 160 4.095932 GTCAACTTCTTTCGAAACAACCCT 59.904 41.667 6.47 0.00 0.00 4.34
168 170 5.761165 TCGAAACAACCCTTTTAAGAAGG 57.239 39.130 8.60 8.60 37.17 3.46
219 246 9.750125 GCCAAGAATTTTTATCCTAATTACCAG 57.250 33.333 0.00 0.00 0.00 4.00
276 303 1.908066 GACAACGCGCTTAACAGGGG 61.908 60.000 5.73 0.00 33.44 4.79
287 314 4.750098 CGCTTAACAGGGGTAATGATGTAG 59.250 45.833 0.00 0.00 0.00 2.74
349 376 2.710096 ATTGGTAACCCCGACATGAG 57.290 50.000 0.00 0.00 35.15 2.90
445 480 3.196254 TGGGACGTCTTTCCACCTTATAC 59.804 47.826 16.46 0.00 37.40 1.47
458 493 5.124457 TCCACCTTATACTACGATAATCGCC 59.876 44.000 0.00 0.00 45.12 5.54
459 494 5.106038 CCACCTTATACTACGATAATCGCCA 60.106 44.000 0.00 0.00 45.12 5.69
483 518 9.595823 CCAGAGATGAATTTCTGCATTTAATTT 57.404 29.630 5.52 0.00 39.54 1.82
567 607 0.949397 GTTCGTCCTTTGGGTGGAAC 59.051 55.000 0.00 0.00 38.03 3.62
671 720 3.601443 ACAAGAGGACACAGCTCATAC 57.399 47.619 0.00 0.00 0.00 2.39
718 777 2.810400 GCCACACTCCAAAGCTACAAGA 60.810 50.000 0.00 0.00 0.00 3.02
821 881 1.354705 CCCCCATGCTCATCATCATCT 59.645 52.381 0.00 0.00 31.79 2.90
884 966 5.061808 CCACCAAACGATCGAAAGTAACTAG 59.938 44.000 24.34 1.50 0.00 2.57
905 987 3.626217 AGACAGGACCGAAAACAAAAGTC 59.374 43.478 0.00 0.00 0.00 3.01
934 1016 0.846015 CTTGGGCCCCACTCATCATA 59.154 55.000 22.27 0.00 30.78 2.15
937 1019 0.773644 GGGCCCCACTCATCATACAT 59.226 55.000 12.23 0.00 0.00 2.29
984 1075 7.364851 GGTTTTCCAGTATATATAGAGAGCCCC 60.365 44.444 0.00 0.00 40.31 5.80
1051 1142 0.835543 ACACCAGAGAGGAAGCAGCT 60.836 55.000 0.00 0.00 41.22 4.24
1052 1143 1.189752 CACCAGAGAGGAAGCAGCTA 58.810 55.000 0.00 0.00 41.22 3.32
1096 1187 1.430228 GTCTCTTCTCCTCGTCGCC 59.570 63.158 0.00 0.00 0.00 5.54
1231 1322 2.489938 ACATGTGTCCGGCTACATTT 57.510 45.000 17.42 10.93 35.46 2.32
1232 1323 2.356135 ACATGTGTCCGGCTACATTTC 58.644 47.619 17.42 0.00 35.46 2.17
1263 1365 4.344102 TCCTATTCCTACGTGAAATCCCTG 59.656 45.833 0.00 0.00 0.00 4.45
1271 1373 0.598065 GTGAAATCCCTGCGCAAACT 59.402 50.000 13.05 0.00 0.00 2.66
1279 1381 1.394697 CCTGCGCAAACTTTTACGTG 58.605 50.000 13.05 0.00 29.99 4.49
1291 1397 7.357287 GCAAACTTTTACGTGCTAGTTGATTTC 60.357 37.037 0.00 0.00 34.13 2.17
1324 1430 1.135831 TGTTGTTGAGTGTTGCACGTG 60.136 47.619 12.28 12.28 39.64 4.49
1379 1485 6.377996 ACCACTGCTCTGCAATTATTATTGAA 59.622 34.615 8.58 0.00 43.12 2.69
1426 1532 2.451990 CGATCGACCGTGCATGCAA 61.452 57.895 24.58 5.85 0.00 4.08
1427 1533 1.765161 CGATCGACCGTGCATGCAAT 61.765 55.000 24.58 11.34 0.00 3.56
1459 1568 2.182825 CAGCGACGTACTGACCATAAC 58.817 52.381 11.68 0.00 37.32 1.89
1670 1921 2.903357 CTGCTCAGCGGGTGGTAT 59.097 61.111 7.42 0.00 0.00 2.73
1676 1927 4.157120 AGCGGGTGGTATGACGGC 62.157 66.667 0.00 0.00 0.00 5.68
1751 2002 4.498520 CAGATCGTCGGGCAGCGT 62.499 66.667 0.00 0.00 0.00 5.07
2420 3355 2.369629 CGTGTCCAACTACACCGCG 61.370 63.158 0.00 0.00 45.66 6.46
3014 3973 1.067974 CCAGGTCCGTTCGCACATATA 59.932 52.381 0.00 0.00 0.00 0.86
3018 3977 3.570975 AGGTCCGTTCGCACATATACATA 59.429 43.478 0.00 0.00 0.00 2.29
3019 3978 3.671928 GGTCCGTTCGCACATATACATAC 59.328 47.826 0.00 0.00 0.00 2.39
3021 3980 4.921515 GTCCGTTCGCACATATACATACAT 59.078 41.667 0.00 0.00 0.00 2.29
3022 3981 6.088173 GTCCGTTCGCACATATACATACATA 58.912 40.000 0.00 0.00 0.00 2.29
3023 3982 6.033196 GTCCGTTCGCACATATACATACATAC 59.967 42.308 0.00 0.00 0.00 2.39
3110 4075 8.411318 TGCTCGTATGAATATATGCATTACTG 57.589 34.615 11.60 2.62 0.00 2.74
3255 4229 1.546923 TCCCGAAATGCTAGACGTGAA 59.453 47.619 0.00 0.00 0.00 3.18
3256 4230 1.927174 CCCGAAATGCTAGACGTGAAG 59.073 52.381 0.00 0.00 0.00 3.02
3286 4260 3.119602 TCGATCGTCGGTGAAGAAGATTT 60.120 43.478 15.94 0.00 38.96 2.17
3299 4277 5.469760 TGAAGAAGATTTGTCGCTTCATTGA 59.530 36.000 0.00 0.00 42.21 2.57
3316 4294 2.509336 ATTCGCTTCCGCCTCACG 60.509 61.111 0.00 0.00 43.15 4.35
3322 4300 1.782028 GCTTCCGCCTCACGTTGTTT 61.782 55.000 0.00 0.00 41.42 2.83
3324 4302 1.064952 CTTCCGCCTCACGTTGTTTTT 59.935 47.619 0.00 0.00 41.42 1.94
3374 4354 4.030134 AGTTCGTCGTCATTATCTCCAC 57.970 45.455 0.00 0.00 0.00 4.02
3377 4357 4.808077 TCGTCGTCATTATCTCCACTAC 57.192 45.455 0.00 0.00 0.00 2.73
3435 4415 2.074942 CGATTCGCCGTGCTTGTTA 58.925 52.632 0.00 0.00 0.00 2.41
3436 4416 0.247145 CGATTCGCCGTGCTTGTTAC 60.247 55.000 0.00 0.00 0.00 2.50
3467 4447 1.681538 TAATTGCCACGGTGTTGTGT 58.318 45.000 7.45 0.00 38.20 3.72
3488 4468 5.009610 GTGTGGAGTTTTCTTAATTGGCTGA 59.990 40.000 0.00 0.00 0.00 4.26
3682 4832 7.688478 ACAAATAACGGTTTTGCTAAACTTC 57.312 32.000 20.43 6.80 42.61 3.01
3685 4835 3.349488 ACGGTTTTGCTAAACTTCAGC 57.651 42.857 20.43 5.55 42.61 4.26
3691 4841 3.417069 TTGCTAAACTTCAGCTGCCTA 57.583 42.857 9.47 0.00 39.83 3.93
3692 4842 3.417069 TGCTAAACTTCAGCTGCCTAA 57.583 42.857 9.47 0.00 39.83 2.69
3694 4844 4.335416 TGCTAAACTTCAGCTGCCTAAAT 58.665 39.130 9.47 0.00 39.83 1.40
3730 4880 3.211045 CGACACTTTTTCCTTCTTCCCA 58.789 45.455 0.00 0.00 0.00 4.37
3732 4882 4.261197 CGACACTTTTTCCTTCTTCCCAAG 60.261 45.833 0.00 0.00 0.00 3.61
3740 4890 1.079819 TTCTTCCCAAGCGAGCGAG 60.080 57.895 0.00 0.00 0.00 5.03
3768 4918 2.035940 AGACCTCGCCGGAGAAGT 59.964 61.111 9.40 9.40 43.27 3.01
3771 4921 1.001145 ACCTCGCCGGAGAAGTAGT 60.001 57.895 7.77 0.99 43.27 2.73
3772 4922 1.031029 ACCTCGCCGGAGAAGTAGTC 61.031 60.000 7.77 0.00 43.27 2.59
3773 4923 1.726533 CCTCGCCGGAGAAGTAGTCC 61.727 65.000 9.83 0.00 43.27 3.85
3775 4925 2.050350 CGCCGGAGAAGTAGTCCCA 61.050 63.158 5.05 0.00 0.00 4.37
3776 4926 1.516423 GCCGGAGAAGTAGTCCCAC 59.484 63.158 5.05 0.00 0.00 4.61
3777 4927 0.971447 GCCGGAGAAGTAGTCCCACT 60.971 60.000 5.05 0.00 0.00 4.00
3778 4928 1.684248 GCCGGAGAAGTAGTCCCACTA 60.684 57.143 5.05 0.00 0.00 2.74
3779 4929 2.946785 CCGGAGAAGTAGTCCCACTAT 58.053 52.381 0.00 0.00 32.65 2.12
3781 4931 3.435313 CCGGAGAAGTAGTCCCACTATCT 60.435 52.174 0.00 0.00 32.65 1.98
3783 4933 5.515184 CCGGAGAAGTAGTCCCACTATCTAT 60.515 48.000 0.00 0.00 32.65 1.98
3784 4934 6.005198 CGGAGAAGTAGTCCCACTATCTATT 58.995 44.000 0.00 0.00 32.65 1.73
3785 4935 6.490721 CGGAGAAGTAGTCCCACTATCTATTT 59.509 42.308 0.00 0.00 32.65 1.40
3786 4936 7.014422 CGGAGAAGTAGTCCCACTATCTATTTT 59.986 40.741 0.00 0.00 32.65 1.82
3787 4937 8.706521 GGAGAAGTAGTCCCACTATCTATTTTT 58.293 37.037 0.00 0.00 32.65 1.94
3790 4940 9.984190 GAAGTAGTCCCACTATCTATTTTTAGG 57.016 37.037 0.00 0.00 32.65 2.69
3791 4941 8.493787 AGTAGTCCCACTATCTATTTTTAGGG 57.506 38.462 0.00 0.00 32.65 3.53
3792 4942 8.294690 AGTAGTCCCACTATCTATTTTTAGGGA 58.705 37.037 0.00 0.00 41.55 4.20
3793 4943 9.102453 GTAGTCCCACTATCTATTTTTAGGGAT 57.898 37.037 0.00 0.00 45.10 3.85
3794 4944 7.978925 AGTCCCACTATCTATTTTTAGGGATG 58.021 38.462 0.00 0.00 45.10 3.51
3795 4945 7.572861 AGTCCCACTATCTATTTTTAGGGATGT 59.427 37.037 0.00 0.00 45.10 3.06
3796 4946 7.661847 GTCCCACTATCTATTTTTAGGGATGTG 59.338 40.741 0.00 0.00 45.10 3.21
3797 4947 7.570982 TCCCACTATCTATTTTTAGGGATGTGA 59.429 37.037 0.00 0.00 39.06 3.58
3798 4948 7.880195 CCCACTATCTATTTTTAGGGATGTGAG 59.120 40.741 0.00 0.00 37.22 3.51
3799 4949 7.880195 CCACTATCTATTTTTAGGGATGTGAGG 59.120 40.741 0.00 0.00 0.00 3.86
3800 4950 8.432805 CACTATCTATTTTTAGGGATGTGAGGT 58.567 37.037 0.00 0.00 0.00 3.85
3801 4951 8.432805 ACTATCTATTTTTAGGGATGTGAGGTG 58.567 37.037 0.00 0.00 0.00 4.00
3802 4952 5.437060 TCTATTTTTAGGGATGTGAGGTGC 58.563 41.667 0.00 0.00 0.00 5.01
3803 4953 3.517296 TTTTTAGGGATGTGAGGTGCA 57.483 42.857 0.00 0.00 0.00 4.57
3804 4954 2.787473 TTTAGGGATGTGAGGTGCAG 57.213 50.000 0.00 0.00 0.00 4.41
3805 4955 0.911769 TTAGGGATGTGAGGTGCAGG 59.088 55.000 0.00 0.00 0.00 4.85
3806 4956 0.252696 TAGGGATGTGAGGTGCAGGT 60.253 55.000 0.00 0.00 0.00 4.00
3807 4957 1.136329 AGGGATGTGAGGTGCAGGTT 61.136 55.000 0.00 0.00 0.00 3.50
3808 4958 0.678048 GGGATGTGAGGTGCAGGTTC 60.678 60.000 0.00 0.00 0.00 3.62
3809 4959 1.021390 GGATGTGAGGTGCAGGTTCG 61.021 60.000 0.00 0.00 0.00 3.95
3810 4960 0.320771 GATGTGAGGTGCAGGTTCGT 60.321 55.000 0.00 0.00 0.00 3.85
3811 4961 0.320771 ATGTGAGGTGCAGGTTCGTC 60.321 55.000 0.00 0.00 0.00 4.20
3812 4962 1.069090 GTGAGGTGCAGGTTCGTCA 59.931 57.895 0.00 0.00 0.00 4.35
3813 4963 1.069090 TGAGGTGCAGGTTCGTCAC 59.931 57.895 0.00 0.00 0.00 3.67
3814 4964 1.069090 GAGGTGCAGGTTCGTCACA 59.931 57.895 0.00 0.00 32.69 3.58
3815 4965 0.531974 GAGGTGCAGGTTCGTCACAA 60.532 55.000 0.00 0.00 32.69 3.33
3816 4966 0.107410 AGGTGCAGGTTCGTCACAAA 60.107 50.000 0.00 0.00 32.69 2.83
3817 4967 0.736053 GGTGCAGGTTCGTCACAAAA 59.264 50.000 0.00 0.00 32.69 2.44
3818 4968 1.268539 GGTGCAGGTTCGTCACAAAAG 60.269 52.381 0.00 0.00 32.69 2.27
3819 4969 0.380378 TGCAGGTTCGTCACAAAAGC 59.620 50.000 0.00 0.00 0.00 3.51
3820 4970 0.380378 GCAGGTTCGTCACAAAAGCA 59.620 50.000 0.00 0.00 0.00 3.91
3821 4971 1.597937 GCAGGTTCGTCACAAAAGCAG 60.598 52.381 0.00 0.00 0.00 4.24
3822 4972 0.663153 AGGTTCGTCACAAAAGCAGC 59.337 50.000 0.00 0.00 0.00 5.25
3823 4973 0.380378 GGTTCGTCACAAAAGCAGCA 59.620 50.000 0.00 0.00 0.00 4.41
3824 4974 1.202245 GGTTCGTCACAAAAGCAGCAA 60.202 47.619 0.00 0.00 0.00 3.91
3825 4975 1.846175 GTTCGTCACAAAAGCAGCAAC 59.154 47.619 0.00 0.00 0.00 4.17
3826 4976 0.380378 TCGTCACAAAAGCAGCAACC 59.620 50.000 0.00 0.00 0.00 3.77
3827 4977 0.594796 CGTCACAAAAGCAGCAACCC 60.595 55.000 0.00 0.00 0.00 4.11
3828 4978 0.249447 GTCACAAAAGCAGCAACCCC 60.249 55.000 0.00 0.00 0.00 4.95
3829 4979 0.685785 TCACAAAAGCAGCAACCCCA 60.686 50.000 0.00 0.00 0.00 4.96
3830 4980 0.530431 CACAAAAGCAGCAACCCCAC 60.530 55.000 0.00 0.00 0.00 4.61
3831 4981 0.687427 ACAAAAGCAGCAACCCCACT 60.687 50.000 0.00 0.00 0.00 4.00
3832 4982 1.327303 CAAAAGCAGCAACCCCACTA 58.673 50.000 0.00 0.00 0.00 2.74
3833 4983 1.895131 CAAAAGCAGCAACCCCACTAT 59.105 47.619 0.00 0.00 0.00 2.12
3834 4984 1.839424 AAAGCAGCAACCCCACTATC 58.161 50.000 0.00 0.00 0.00 2.08
3835 4985 0.995024 AAGCAGCAACCCCACTATCT 59.005 50.000 0.00 0.00 0.00 1.98
3836 4986 0.995024 AGCAGCAACCCCACTATCTT 59.005 50.000 0.00 0.00 0.00 2.40
3837 4987 2.196595 AGCAGCAACCCCACTATCTTA 58.803 47.619 0.00 0.00 0.00 2.10
3838 4988 2.171448 AGCAGCAACCCCACTATCTTAG 59.829 50.000 0.00 0.00 0.00 2.18
3839 4989 2.565841 CAGCAACCCCACTATCTTAGC 58.434 52.381 0.00 0.00 0.00 3.09
3840 4990 2.171448 CAGCAACCCCACTATCTTAGCT 59.829 50.000 0.00 0.00 0.00 3.32
3841 4991 3.388024 CAGCAACCCCACTATCTTAGCTA 59.612 47.826 0.00 0.00 0.00 3.32
3842 4992 4.037927 AGCAACCCCACTATCTTAGCTAA 58.962 43.478 5.94 5.94 0.00 3.09
3843 4993 4.473559 AGCAACCCCACTATCTTAGCTAAA 59.526 41.667 7.74 0.00 0.00 1.85
3844 4994 5.132816 AGCAACCCCACTATCTTAGCTAAAT 59.867 40.000 7.74 6.95 0.00 1.40
3845 4995 5.239525 GCAACCCCACTATCTTAGCTAAATG 59.760 44.000 7.74 0.00 0.00 2.32
3846 4996 6.591935 CAACCCCACTATCTTAGCTAAATGA 58.408 40.000 7.74 2.72 0.00 2.57
3847 4997 6.176014 ACCCCACTATCTTAGCTAAATGAC 57.824 41.667 7.74 0.00 0.00 3.06
3848 4998 5.071923 ACCCCACTATCTTAGCTAAATGACC 59.928 44.000 7.74 0.00 0.00 4.02
3849 4999 5.513267 CCCCACTATCTTAGCTAAATGACCC 60.513 48.000 7.74 0.00 0.00 4.46
3850 5000 5.308237 CCCACTATCTTAGCTAAATGACCCT 59.692 44.000 7.74 0.00 0.00 4.34
3851 5001 6.183361 CCCACTATCTTAGCTAAATGACCCTT 60.183 42.308 7.74 0.00 0.00 3.95
3852 5002 7.283329 CCACTATCTTAGCTAAATGACCCTTT 58.717 38.462 7.74 0.00 0.00 3.11
3853 5003 7.775561 CCACTATCTTAGCTAAATGACCCTTTT 59.224 37.037 7.74 0.00 0.00 2.27
3854 5004 9.178758 CACTATCTTAGCTAAATGACCCTTTTT 57.821 33.333 7.74 0.00 0.00 1.94
3855 5005 9.397280 ACTATCTTAGCTAAATGACCCTTTTTC 57.603 33.333 7.74 0.00 0.00 2.29
3856 5006 9.620259 CTATCTTAGCTAAATGACCCTTTTTCT 57.380 33.333 7.74 0.00 0.00 2.52
3858 5008 8.788325 TCTTAGCTAAATGACCCTTTTTCTAC 57.212 34.615 7.74 0.00 0.00 2.59
3859 5009 8.603304 TCTTAGCTAAATGACCCTTTTTCTACT 58.397 33.333 7.74 0.00 0.00 2.57
3860 5010 9.886132 CTTAGCTAAATGACCCTTTTTCTACTA 57.114 33.333 7.74 0.00 0.00 1.82
3861 5011 9.886132 TTAGCTAAATGACCCTTTTTCTACTAG 57.114 33.333 2.97 0.00 0.00 2.57
3862 5012 7.919151 AGCTAAATGACCCTTTTTCTACTAGT 58.081 34.615 0.00 0.00 0.00 2.57
3863 5013 7.824779 AGCTAAATGACCCTTTTTCTACTAGTG 59.175 37.037 5.39 0.00 0.00 2.74
3864 5014 7.606839 GCTAAATGACCCTTTTTCTACTAGTGT 59.393 37.037 5.39 0.00 0.00 3.55
3882 5285 1.459539 TAGAGGAAGGGATGGCCGG 60.460 63.158 0.00 0.00 33.83 6.13
3905 5308 2.972505 CGGCCAGCAACGACAGTT 60.973 61.111 2.24 0.00 42.15 3.16
3915 5318 1.821216 AACGACAGTTGGGCCTTATG 58.179 50.000 4.53 2.76 39.48 1.90
3916 5319 0.981183 ACGACAGTTGGGCCTTATGA 59.019 50.000 4.53 0.00 0.00 2.15
3917 5320 1.349688 ACGACAGTTGGGCCTTATGAA 59.650 47.619 4.53 0.00 0.00 2.57
3918 5321 1.737793 CGACAGTTGGGCCTTATGAAC 59.262 52.381 4.53 0.00 0.00 3.18
3919 5322 2.092323 GACAGTTGGGCCTTATGAACC 58.908 52.381 4.53 0.00 0.00 3.62
3920 5323 1.094785 CAGTTGGGCCTTATGAACCG 58.905 55.000 4.53 0.00 0.00 4.44
3921 5324 0.034477 AGTTGGGCCTTATGAACCGG 60.034 55.000 4.53 0.00 0.00 5.28
3922 5325 1.035385 GTTGGGCCTTATGAACCGGG 61.035 60.000 6.32 0.00 0.00 5.73
3923 5326 1.208844 TTGGGCCTTATGAACCGGGA 61.209 55.000 6.32 0.00 0.00 5.14
3924 5327 1.153025 GGGCCTTATGAACCGGGAC 60.153 63.158 6.32 0.00 0.00 4.46
3925 5328 1.605453 GGCCTTATGAACCGGGACA 59.395 57.895 6.32 5.75 0.00 4.02
3926 5329 0.034863 GGCCTTATGAACCGGGACAA 60.035 55.000 6.32 0.00 0.00 3.18
3927 5330 1.614850 GGCCTTATGAACCGGGACAAA 60.615 52.381 6.32 2.62 0.00 2.83
3928 5331 2.375146 GCCTTATGAACCGGGACAAAT 58.625 47.619 6.32 0.00 0.00 2.32
3929 5332 2.099098 GCCTTATGAACCGGGACAAATG 59.901 50.000 6.32 0.20 0.00 2.32
3930 5333 2.687935 CCTTATGAACCGGGACAAATGG 59.312 50.000 6.32 5.49 0.00 3.16
3931 5334 1.757682 TATGAACCGGGACAAATGGC 58.242 50.000 6.32 0.00 0.00 4.40
3932 5335 0.970427 ATGAACCGGGACAAATGGCC 60.970 55.000 6.32 0.00 44.61 5.36
3942 5345 4.188247 GGACAAATGGCCCTTTTTCTAC 57.812 45.455 16.22 1.38 37.19 2.59
3943 5346 3.832490 GGACAAATGGCCCTTTTTCTACT 59.168 43.478 16.22 0.00 37.19 2.57
3944 5347 5.014202 GGACAAATGGCCCTTTTTCTACTA 58.986 41.667 16.22 0.00 37.19 1.82
3945 5348 5.125578 GGACAAATGGCCCTTTTTCTACTAG 59.874 44.000 16.22 1.81 37.19 2.57
3946 5349 5.641155 ACAAATGGCCCTTTTTCTACTAGT 58.359 37.500 2.87 0.00 0.00 2.57
3947 5350 5.476945 ACAAATGGCCCTTTTTCTACTAGTG 59.523 40.000 5.39 0.00 0.00 2.74
3948 5351 4.929146 ATGGCCCTTTTTCTACTAGTGT 57.071 40.909 5.39 0.00 0.00 3.55
3949 5352 6.382919 AATGGCCCTTTTTCTACTAGTGTA 57.617 37.500 5.39 0.00 0.00 2.90
3950 5353 5.416271 TGGCCCTTTTTCTACTAGTGTAG 57.584 43.478 5.39 0.00 45.56 2.74
3962 5365 3.917300 ACTAGTGTAGAGGAAGGGATGG 58.083 50.000 0.00 0.00 0.00 3.51
3963 5366 2.950990 AGTGTAGAGGAAGGGATGGT 57.049 50.000 0.00 0.00 0.00 3.55
3964 5367 2.753247 AGTGTAGAGGAAGGGATGGTC 58.247 52.381 0.00 0.00 0.00 4.02
3965 5368 1.409427 GTGTAGAGGAAGGGATGGTCG 59.591 57.143 0.00 0.00 0.00 4.79
3966 5369 1.041437 GTAGAGGAAGGGATGGTCGG 58.959 60.000 0.00 0.00 0.00 4.79
3967 5370 0.105658 TAGAGGAAGGGATGGTCGGG 60.106 60.000 0.00 0.00 0.00 5.14
3968 5371 2.366972 AGGAAGGGATGGTCGGGG 60.367 66.667 0.00 0.00 0.00 5.73
3969 5372 4.191015 GGAAGGGATGGTCGGGGC 62.191 72.222 0.00 0.00 0.00 5.80
3970 5373 4.547367 GAAGGGATGGTCGGGGCG 62.547 72.222 0.00 0.00 0.00 6.13
3989 5392 3.716006 CGGCCAGCAACGACAGTG 61.716 66.667 2.24 0.00 0.00 3.66
3990 5393 3.357079 GGCCAGCAACGACAGTGG 61.357 66.667 0.00 0.00 0.00 4.00
3991 5394 2.280797 GCCAGCAACGACAGTGGA 60.281 61.111 0.00 0.00 31.04 4.02
3995 5398 2.140792 AGCAACGACAGTGGAGGGT 61.141 57.895 0.00 0.00 0.00 4.34
4009 5412 4.048470 GGGTGGTTGAGGGGAGGC 62.048 72.222 0.00 0.00 0.00 4.70
4011 5414 4.410400 GTGGTTGAGGGGAGGCCG 62.410 72.222 0.00 0.00 0.00 6.13
4090 5493 2.272146 GGCATGCGGGAGGAAGAA 59.728 61.111 12.44 0.00 0.00 2.52
4091 5494 1.821332 GGCATGCGGGAGGAAGAAG 60.821 63.158 12.44 0.00 0.00 2.85
4094 5497 1.070758 GCATGCGGGAGGAAGAAGATA 59.929 52.381 0.00 0.00 0.00 1.98
4095 5498 2.869636 GCATGCGGGAGGAAGAAGATAG 60.870 54.545 0.00 0.00 0.00 2.08
4096 5499 1.414158 TGCGGGAGGAAGAAGATAGG 58.586 55.000 0.00 0.00 0.00 2.57
4097 5500 1.063190 TGCGGGAGGAAGAAGATAGGA 60.063 52.381 0.00 0.00 0.00 2.94
4103 5506 3.141272 GGAGGAAGAAGATAGGAGGGAGA 59.859 52.174 0.00 0.00 0.00 3.71
4123 5526 8.997734 AGGGAGAAAGAAGATGAACAATACTAT 58.002 33.333 0.00 0.00 0.00 2.12
4150 5553 7.581476 TCTATTTTGAACGTTTGGATGAAGAC 58.419 34.615 0.46 0.00 0.00 3.01
4151 5554 5.828299 TTTTGAACGTTTGGATGAAGACT 57.172 34.783 0.46 0.00 0.00 3.24
4155 5558 2.767505 ACGTTTGGATGAAGACTGGAC 58.232 47.619 0.00 0.00 0.00 4.02
4174 5577 5.996644 TGGACGGTCCATATAAAAAGTGAT 58.003 37.500 25.53 0.00 42.67 3.06
4179 5582 7.930217 ACGGTCCATATAAAAAGTGATTGATG 58.070 34.615 0.00 0.00 0.00 3.07
4229 5632 6.966534 ATAGAGGCTCCCAACAAATAATTG 57.033 37.500 11.71 0.00 42.46 2.32
4231 5634 2.501316 AGGCTCCCAACAAATAATTGCC 59.499 45.455 0.00 0.00 40.34 4.52
4232 5635 2.419990 GGCTCCCAACAAATAATTGCCC 60.420 50.000 0.00 0.00 40.34 5.36
4242 5645 7.382218 CCAACAAATAATTGCCCGATAAATCTC 59.618 37.037 0.00 0.00 40.34 2.75
4255 5658 7.148340 GCCCGATAAATCTCAAAGATCCATTAG 60.148 40.741 0.00 0.00 32.89 1.73
4266 5669 5.649782 AAGATCCATTAGTGTTTGCTTGG 57.350 39.130 0.00 0.00 0.00 3.61
4272 5675 3.921119 TTAGTGTTTGCTTGGCATCTG 57.079 42.857 0.00 0.00 38.76 2.90
4274 5677 1.005294 GTGTTTGCTTGGCATCTGCG 61.005 55.000 0.00 0.00 43.26 5.18
4275 5678 1.171549 TGTTTGCTTGGCATCTGCGA 61.172 50.000 0.00 0.00 43.26 5.10
4276 5679 0.455633 GTTTGCTTGGCATCTGCGAG 60.456 55.000 0.00 0.00 43.26 5.03
4281 5684 0.585357 CTTGGCATCTGCGAGTATGC 59.415 55.000 7.52 7.52 46.20 3.14
4288 5691 4.299155 GCATCTGCGAGTATGCTTTAGTA 58.701 43.478 8.50 0.00 44.08 1.82
4289 5692 4.926238 GCATCTGCGAGTATGCTTTAGTAT 59.074 41.667 8.50 0.00 44.08 2.12
4295 5698 6.338146 TGCGAGTATGCTTTAGTATGACTTT 58.662 36.000 0.00 0.00 35.36 2.66
4296 5699 6.255670 TGCGAGTATGCTTTAGTATGACTTTG 59.744 38.462 0.00 0.00 35.36 2.77
4297 5700 6.475727 GCGAGTATGCTTTAGTATGACTTTGA 59.524 38.462 0.00 0.00 0.00 2.69
4298 5701 7.010183 GCGAGTATGCTTTAGTATGACTTTGAA 59.990 37.037 0.00 0.00 0.00 2.69
4322 5725 1.986882 AAACTTGCAGAGTGAAGGGG 58.013 50.000 2.88 0.00 39.00 4.79
4323 5726 1.140312 AACTTGCAGAGTGAAGGGGA 58.860 50.000 2.88 0.00 39.00 4.81
4324 5727 0.689623 ACTTGCAGAGTGAAGGGGAG 59.310 55.000 1.44 0.00 37.17 4.30
4325 5728 0.979665 CTTGCAGAGTGAAGGGGAGA 59.020 55.000 0.00 0.00 0.00 3.71
4326 5729 1.558756 CTTGCAGAGTGAAGGGGAGAT 59.441 52.381 0.00 0.00 0.00 2.75
4327 5730 0.907486 TGCAGAGTGAAGGGGAGATG 59.093 55.000 0.00 0.00 0.00 2.90
4328 5731 1.198713 GCAGAGTGAAGGGGAGATGA 58.801 55.000 0.00 0.00 0.00 2.92
4329 5732 1.138661 GCAGAGTGAAGGGGAGATGAG 59.861 57.143 0.00 0.00 0.00 2.90
4330 5733 2.465813 CAGAGTGAAGGGGAGATGAGT 58.534 52.381 0.00 0.00 0.00 3.41
4331 5734 2.430332 CAGAGTGAAGGGGAGATGAGTC 59.570 54.545 0.00 0.00 0.00 3.36
4346 5749 5.911752 AGATGAGTCATGAGTGGAACATAC 58.088 41.667 11.20 0.79 44.52 2.39
4347 5750 4.471904 TGAGTCATGAGTGGAACATACC 57.528 45.455 8.05 0.00 44.52 2.73
4349 5752 4.471025 TGAGTCATGAGTGGAACATACCAT 59.529 41.667 8.05 0.00 44.52 3.55
4355 5758 8.184192 GTCATGAGTGGAACATACCATAAAAAG 58.816 37.037 0.00 0.00 44.52 2.27
4356 5759 8.106462 TCATGAGTGGAACATACCATAAAAAGA 58.894 33.333 0.00 0.00 44.52 2.52
4357 5760 7.681939 TGAGTGGAACATACCATAAAAAGAC 57.318 36.000 0.00 0.00 44.52 3.01
4358 5761 7.458397 TGAGTGGAACATACCATAAAAAGACT 58.542 34.615 0.00 0.00 44.52 3.24
4361 5764 7.393515 AGTGGAACATACCATAAAAAGACTTCC 59.606 37.037 0.00 0.00 44.52 3.46
4393 5797 7.523709 GCTCCTTAGAGAATGAGAAGATGTAGG 60.524 44.444 0.00 0.00 43.39 3.18
4410 5814 9.632638 AAGATGTAGGAATAATTTATGTGTGCT 57.367 29.630 0.00 0.00 0.00 4.40
4413 5817 6.481976 TGTAGGAATAATTTATGTGTGCTCGG 59.518 38.462 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.781548 TTTAACCAAGTCTTAGTCAAGTGAC 57.218 36.000 3.12 3.12 45.08 3.67
7 8 8.429641 AGATTTAACCAAGTCTTAGTCAAGTGA 58.570 33.333 0.00 0.00 33.20 3.41
8 9 8.608844 AGATTTAACCAAGTCTTAGTCAAGTG 57.391 34.615 0.00 0.00 33.20 3.16
9 10 8.429641 TGAGATTTAACCAAGTCTTAGTCAAGT 58.570 33.333 0.00 0.00 31.40 3.16
10 11 8.833231 TGAGATTTAACCAAGTCTTAGTCAAG 57.167 34.615 0.00 0.00 31.40 3.02
11 12 9.793259 ATTGAGATTTAACCAAGTCTTAGTCAA 57.207 29.630 0.00 0.00 31.40 3.18
12 13 9.436957 GATTGAGATTTAACCAAGTCTTAGTCA 57.563 33.333 0.00 0.00 31.40 3.41
13 14 8.596380 CGATTGAGATTTAACCAAGTCTTAGTC 58.404 37.037 0.00 0.00 31.40 2.59
14 15 8.311836 TCGATTGAGATTTAACCAAGTCTTAGT 58.688 33.333 0.00 0.00 31.40 2.24
15 16 8.596380 GTCGATTGAGATTTAACCAAGTCTTAG 58.404 37.037 0.00 0.00 31.40 2.18
16 17 8.311836 AGTCGATTGAGATTTAACCAAGTCTTA 58.688 33.333 0.00 0.00 31.40 2.10
17 18 7.118390 CAGTCGATTGAGATTTAACCAAGTCTT 59.882 37.037 0.86 0.00 31.40 3.01
18 19 6.591834 CAGTCGATTGAGATTTAACCAAGTCT 59.408 38.462 0.86 0.00 33.74 3.24
19 20 6.590292 TCAGTCGATTGAGATTTAACCAAGTC 59.410 38.462 6.51 0.00 0.00 3.01
20 21 6.464222 TCAGTCGATTGAGATTTAACCAAGT 58.536 36.000 6.51 0.00 0.00 3.16
21 22 6.813649 TCTCAGTCGATTGAGATTTAACCAAG 59.186 38.462 30.21 7.61 46.42 3.61
22 23 6.697395 TCTCAGTCGATTGAGATTTAACCAA 58.303 36.000 30.21 10.52 46.42 3.67
23 24 6.280855 TCTCAGTCGATTGAGATTTAACCA 57.719 37.500 30.21 11.16 46.42 3.67
32 33 4.859798 GTGTTTAGGTCTCAGTCGATTGAG 59.140 45.833 27.00 27.00 44.74 3.02
33 34 4.279922 TGTGTTTAGGTCTCAGTCGATTGA 59.720 41.667 10.44 10.44 0.00 2.57
34 35 4.386049 GTGTGTTTAGGTCTCAGTCGATTG 59.614 45.833 0.68 0.68 0.00 2.67
35 36 4.557205 GTGTGTTTAGGTCTCAGTCGATT 58.443 43.478 0.00 0.00 0.00 3.34
36 37 3.056749 GGTGTGTTTAGGTCTCAGTCGAT 60.057 47.826 0.00 0.00 0.00 3.59
37 38 2.295349 GGTGTGTTTAGGTCTCAGTCGA 59.705 50.000 0.00 0.00 0.00 4.20
38 39 2.609737 GGGTGTGTTTAGGTCTCAGTCG 60.610 54.545 0.00 0.00 0.00 4.18
39 40 2.633481 AGGGTGTGTTTAGGTCTCAGTC 59.367 50.000 0.00 0.00 0.00 3.51
40 41 2.690840 AGGGTGTGTTTAGGTCTCAGT 58.309 47.619 0.00 0.00 0.00 3.41
41 42 3.771577 AAGGGTGTGTTTAGGTCTCAG 57.228 47.619 0.00 0.00 0.00 3.35
42 43 5.836024 ATTAAGGGTGTGTTTAGGTCTCA 57.164 39.130 0.00 0.00 0.00 3.27
43 44 9.895138 TTAATATTAAGGGTGTGTTTAGGTCTC 57.105 33.333 3.71 0.00 0.00 3.36
46 47 9.810870 TGTTTAATATTAAGGGTGTGTTTAGGT 57.189 29.630 7.91 0.00 0.00 3.08
50 51 9.582648 ACTCTGTTTAATATTAAGGGTGTGTTT 57.417 29.630 7.91 0.00 0.00 2.83
52 53 9.886132 CTACTCTGTTTAATATTAAGGGTGTGT 57.114 33.333 7.91 9.07 0.00 3.72
73 74 3.251004 CAGTGGTTGCCTTTGTTCTACTC 59.749 47.826 0.00 0.00 0.00 2.59
86 87 1.463444 GTATGGTTCGACAGTGGTTGC 59.537 52.381 0.00 0.00 0.00 4.17
98 99 9.878599 CCGTTAATTTCATATCTTGTATGGTTC 57.121 33.333 0.00 0.00 0.00 3.62
99 100 9.403583 ACCGTTAATTTCATATCTTGTATGGTT 57.596 29.630 0.00 0.00 0.00 3.67
100 101 8.974060 ACCGTTAATTTCATATCTTGTATGGT 57.026 30.769 0.00 0.00 0.00 3.55
110 112 7.094377 ACTCAGTTGCAACCGTTAATTTCATAT 60.094 33.333 25.62 0.00 0.00 1.78
127 129 3.555956 TCGAAAGAAGTTGACTCAGTTGC 59.444 43.478 0.00 0.00 37.03 4.17
168 170 7.579726 CAACGATGAAATGAGGAGATTTATCC 58.420 38.462 0.00 0.00 39.89 2.59
176 178 2.358957 TGGCAACGATGAAATGAGGAG 58.641 47.619 0.00 0.00 42.51 3.69
180 182 5.389859 AATTCTTGGCAACGATGAAATGA 57.610 34.783 0.00 0.00 42.51 2.57
184 186 6.811170 GGATAAAAATTCTTGGCAACGATGAA 59.189 34.615 0.00 0.00 42.51 2.57
219 246 1.903183 ACCTTCTTCACTAGCTGGTCC 59.097 52.381 0.00 0.00 0.00 4.46
276 303 4.667519 AGGGACGAACCTACATCATTAC 57.332 45.455 0.83 0.00 39.65 1.89
287 314 2.493501 GGTCGCTAGGGACGAACC 59.506 66.667 27.68 14.99 41.35 3.62
349 376 0.165944 CTGTCGTCAAAATCACCGCC 59.834 55.000 0.00 0.00 0.00 6.13
406 433 1.966451 CACCGGTGCCTTTCTGTCC 60.966 63.158 24.02 0.00 0.00 4.02
445 480 4.686839 TCATCTCTGGCGATTATCGTAG 57.313 45.455 16.18 13.98 42.81 3.51
537 577 1.179814 AGGACGAACTCGAGGCTGTT 61.180 55.000 18.41 1.92 43.02 3.16
567 607 7.184800 TGTACTAAGCACGGCATTTATAATG 57.815 36.000 0.00 0.00 0.00 1.90
671 720 8.025445 CCAAATTAAAGTCAACCTGATCTTCTG 58.975 37.037 0.00 0.00 0.00 3.02
718 777 3.902261 CATGCACGCATATTACATGGT 57.098 42.857 3.80 0.00 35.57 3.55
821 881 3.923827 TTTACGACGACGACGATGATA 57.076 42.857 25.15 5.30 42.66 2.15
884 966 3.375922 TGACTTTTGTTTTCGGTCCTGTC 59.624 43.478 0.00 0.00 0.00 3.51
905 987 1.329913 GGGGCCCAAGCAACCTAATG 61.330 60.000 26.86 0.00 42.56 1.90
934 1016 7.038729 ACCATTGGTCGATGAGATATCTAATGT 60.039 37.037 7.36 0.00 0.00 2.71
937 1019 6.918067 ACCATTGGTCGATGAGATATCTAA 57.082 37.500 4.89 0.00 0.00 2.10
984 1075 1.517694 GATTGCAATGGTGGCGCTG 60.518 57.895 18.59 0.00 0.00 5.18
1051 1142 1.057275 TGGGGACGGCCATTGCTATA 61.057 55.000 11.00 0.00 37.74 1.31
1052 1143 2.343475 CTGGGGACGGCCATTGCTAT 62.343 60.000 11.00 0.00 37.74 2.97
1147 1238 1.538512 TCGAACTGGTACTTCCTCGTG 59.461 52.381 0.00 0.00 34.44 4.35
1203 1294 2.159156 GCCGGACACATGTACATCAGTA 60.159 50.000 5.05 0.00 0.00 2.74
1204 1295 1.405526 GCCGGACACATGTACATCAGT 60.406 52.381 5.05 7.40 0.00 3.41
1205 1296 1.134699 AGCCGGACACATGTACATCAG 60.135 52.381 5.05 3.93 0.00 2.90
1206 1297 0.901827 AGCCGGACACATGTACATCA 59.098 50.000 5.05 0.00 0.00 3.07
1207 1298 2.159156 TGTAGCCGGACACATGTACATC 60.159 50.000 5.05 0.00 0.00 3.06
1271 1373 8.997621 ATCTAGAAATCAACTAGCACGTAAAA 57.002 30.769 0.00 0.00 37.73 1.52
1279 1381 4.811557 ACGGCAATCTAGAAATCAACTAGC 59.188 41.667 0.00 0.00 37.73 3.42
1291 1397 3.325870 TCAACAACAGACGGCAATCTAG 58.674 45.455 0.00 0.00 0.00 2.43
1324 1430 9.061610 CATACGTAAAAGTTTGATGGAATTGTC 57.938 33.333 0.00 0.00 0.00 3.18
1355 1461 6.381481 TCAATAATAATTGCAGAGCAGTGG 57.619 37.500 0.00 0.00 41.96 4.00
1379 1485 1.269413 GCATGTCTGCTTGCAACAACT 60.269 47.619 0.00 0.00 45.32 3.16
1670 1921 4.371417 ACGTAGGAGGGGCCGTCA 62.371 66.667 26.04 5.36 43.43 4.35
1676 1927 3.064987 CTGCGTGACGTAGGAGGGG 62.065 68.421 15.33 0.00 36.04 4.79
2381 3316 0.667487 CGCTGGTGTCGTTGATCTGT 60.667 55.000 0.00 0.00 0.00 3.41
3014 3973 9.662947 CAAGATCCATGTATGATGTATGTATGT 57.337 33.333 0.00 0.00 0.00 2.29
3018 3977 9.445878 GATTCAAGATCCATGTATGATGTATGT 57.554 33.333 0.00 0.00 0.00 2.29
3019 3978 8.890718 GGATTCAAGATCCATGTATGATGTATG 58.109 37.037 0.28 0.00 38.09 2.39
3021 3980 8.211030 AGGATTCAAGATCCATGTATGATGTA 57.789 34.615 7.71 0.00 40.61 2.29
3022 3981 7.087895 AGGATTCAAGATCCATGTATGATGT 57.912 36.000 7.71 0.00 40.61 3.06
3023 3982 7.166167 TGAGGATTCAAGATCCATGTATGATG 58.834 38.462 7.71 0.00 40.61 3.07
3095 4060 4.703575 CCTGCCAGCAGTAATGCATATATT 59.296 41.667 18.53 0.00 42.15 1.28
3097 4062 3.072915 ACCTGCCAGCAGTAATGCATATA 59.927 43.478 18.53 0.12 42.15 0.86
3110 4075 0.322456 TGAACCATACACCTGCCAGC 60.322 55.000 0.00 0.00 0.00 4.85
3255 4229 2.031595 CACCGACGATCGATCTTGATCT 60.032 50.000 24.34 0.00 43.74 2.75
3256 4230 2.031944 TCACCGACGATCGATCTTGATC 60.032 50.000 24.34 13.15 43.74 2.92
3286 4260 1.725641 AGCGAATCAATGAAGCGACA 58.274 45.000 11.31 0.00 0.00 4.35
3363 4342 9.416794 GAATACATCACTGTAGTGGAGATAATG 57.583 37.037 11.76 9.18 45.65 1.90
3394 4374 7.528307 TCGCCTGAAAAATTAATTAGCGTAAA 58.472 30.769 17.33 4.71 41.60 2.01
3467 4447 4.218417 GCTCAGCCAATTAAGAAAACTCCA 59.782 41.667 0.00 0.00 0.00 3.86
3488 4468 7.859325 TTCTGTTACAACTTACAAAGAAGCT 57.141 32.000 0.00 0.00 0.00 3.74
3699 4849 0.745128 AAAAGTGTCGGACGCCAACA 60.745 50.000 17.47 0.00 0.00 3.33
3709 4859 3.211045 TGGGAAGAAGGAAAAAGTGTCG 58.789 45.455 0.00 0.00 0.00 4.35
3730 4880 1.142748 CCTTCCATCTCGCTCGCTT 59.857 57.895 0.00 0.00 0.00 4.68
3732 4882 2.964389 GCCTTCCATCTCGCTCGC 60.964 66.667 0.00 0.00 0.00 5.03
3761 4911 7.842887 AAATAGATAGTGGGACTACTTCTCC 57.157 40.000 0.00 0.00 32.84 3.71
3764 4914 9.984190 CCTAAAAATAGATAGTGGGACTACTTC 57.016 37.037 0.00 0.00 32.84 3.01
3768 4918 9.101325 CATCCCTAAAAATAGATAGTGGGACTA 57.899 37.037 0.00 0.00 44.14 2.59
3771 4921 7.570982 TCACATCCCTAAAAATAGATAGTGGGA 59.429 37.037 0.00 0.00 45.22 4.37
3772 4922 7.745717 TCACATCCCTAAAAATAGATAGTGGG 58.254 38.462 0.00 0.00 34.98 4.61
3773 4923 7.880195 CCTCACATCCCTAAAAATAGATAGTGG 59.120 40.741 0.00 0.00 0.00 4.00
3775 4925 8.432805 CACCTCACATCCCTAAAAATAGATAGT 58.567 37.037 0.00 0.00 0.00 2.12
3776 4926 7.389053 GCACCTCACATCCCTAAAAATAGATAG 59.611 40.741 0.00 0.00 0.00 2.08
3777 4927 7.147391 TGCACCTCACATCCCTAAAAATAGATA 60.147 37.037 0.00 0.00 0.00 1.98
3778 4928 6.064717 GCACCTCACATCCCTAAAAATAGAT 58.935 40.000 0.00 0.00 0.00 1.98
3779 4929 5.045213 TGCACCTCACATCCCTAAAAATAGA 60.045 40.000 0.00 0.00 0.00 1.98
3781 4931 5.186256 TGCACCTCACATCCCTAAAAATA 57.814 39.130 0.00 0.00 0.00 1.40
3783 4933 3.420893 CTGCACCTCACATCCCTAAAAA 58.579 45.455 0.00 0.00 0.00 1.94
3784 4934 2.290896 CCTGCACCTCACATCCCTAAAA 60.291 50.000 0.00 0.00 0.00 1.52
3785 4935 1.281867 CCTGCACCTCACATCCCTAAA 59.718 52.381 0.00 0.00 0.00 1.85
3786 4936 0.911769 CCTGCACCTCACATCCCTAA 59.088 55.000 0.00 0.00 0.00 2.69
3787 4937 0.252696 ACCTGCACCTCACATCCCTA 60.253 55.000 0.00 0.00 0.00 3.53
3788 4938 1.136329 AACCTGCACCTCACATCCCT 61.136 55.000 0.00 0.00 0.00 4.20
3789 4939 0.678048 GAACCTGCACCTCACATCCC 60.678 60.000 0.00 0.00 0.00 3.85
3790 4940 1.021390 CGAACCTGCACCTCACATCC 61.021 60.000 0.00 0.00 0.00 3.51
3791 4941 0.320771 ACGAACCTGCACCTCACATC 60.321 55.000 0.00 0.00 0.00 3.06
3792 4942 0.320771 GACGAACCTGCACCTCACAT 60.321 55.000 0.00 0.00 0.00 3.21
3793 4943 1.069090 GACGAACCTGCACCTCACA 59.931 57.895 0.00 0.00 0.00 3.58
3794 4944 1.069090 TGACGAACCTGCACCTCAC 59.931 57.895 0.00 0.00 0.00 3.51
3795 4945 1.069090 GTGACGAACCTGCACCTCA 59.931 57.895 0.00 0.00 0.00 3.86
3796 4946 0.531974 TTGTGACGAACCTGCACCTC 60.532 55.000 0.00 0.00 0.00 3.85
3797 4947 0.107410 TTTGTGACGAACCTGCACCT 60.107 50.000 0.00 0.00 0.00 4.00
3798 4948 0.736053 TTTTGTGACGAACCTGCACC 59.264 50.000 0.00 0.00 0.00 5.01
3799 4949 1.859998 GCTTTTGTGACGAACCTGCAC 60.860 52.381 0.00 0.00 0.00 4.57
3800 4950 0.380378 GCTTTTGTGACGAACCTGCA 59.620 50.000 0.00 0.00 0.00 4.41
3801 4951 0.380378 TGCTTTTGTGACGAACCTGC 59.620 50.000 0.00 0.00 0.00 4.85
3802 4952 1.597937 GCTGCTTTTGTGACGAACCTG 60.598 52.381 0.00 0.00 0.00 4.00
3803 4953 0.663153 GCTGCTTTTGTGACGAACCT 59.337 50.000 0.00 0.00 0.00 3.50
3804 4954 0.380378 TGCTGCTTTTGTGACGAACC 59.620 50.000 0.00 0.00 0.00 3.62
3805 4955 1.846175 GTTGCTGCTTTTGTGACGAAC 59.154 47.619 0.00 0.00 0.00 3.95
3806 4956 1.202245 GGTTGCTGCTTTTGTGACGAA 60.202 47.619 0.00 0.00 0.00 3.85
3807 4957 0.380378 GGTTGCTGCTTTTGTGACGA 59.620 50.000 0.00 0.00 0.00 4.20
3808 4958 0.594796 GGGTTGCTGCTTTTGTGACG 60.595 55.000 0.00 0.00 0.00 4.35
3809 4959 0.249447 GGGGTTGCTGCTTTTGTGAC 60.249 55.000 0.00 0.00 0.00 3.67
3810 4960 0.685785 TGGGGTTGCTGCTTTTGTGA 60.686 50.000 0.00 0.00 0.00 3.58
3811 4961 0.530431 GTGGGGTTGCTGCTTTTGTG 60.530 55.000 0.00 0.00 0.00 3.33
3812 4962 0.687427 AGTGGGGTTGCTGCTTTTGT 60.687 50.000 0.00 0.00 0.00 2.83
3813 4963 1.327303 TAGTGGGGTTGCTGCTTTTG 58.673 50.000 0.00 0.00 0.00 2.44
3814 4964 2.171003 GATAGTGGGGTTGCTGCTTTT 58.829 47.619 0.00 0.00 0.00 2.27
3815 4965 1.355720 AGATAGTGGGGTTGCTGCTTT 59.644 47.619 0.00 0.00 0.00 3.51
3816 4966 0.995024 AGATAGTGGGGTTGCTGCTT 59.005 50.000 0.00 0.00 0.00 3.91
3817 4967 0.995024 AAGATAGTGGGGTTGCTGCT 59.005 50.000 0.00 0.00 0.00 4.24
3818 4968 2.565841 CTAAGATAGTGGGGTTGCTGC 58.434 52.381 0.00 0.00 0.00 5.25
3819 4969 2.171448 AGCTAAGATAGTGGGGTTGCTG 59.829 50.000 0.00 0.00 0.00 4.41
3820 4970 2.482494 AGCTAAGATAGTGGGGTTGCT 58.518 47.619 0.00 0.00 0.00 3.91
3821 4971 4.417426 TTAGCTAAGATAGTGGGGTTGC 57.583 45.455 0.86 0.00 0.00 4.17
3822 4972 6.483640 GTCATTTAGCTAAGATAGTGGGGTTG 59.516 42.308 6.24 0.00 0.00 3.77
3823 4973 6.409349 GGTCATTTAGCTAAGATAGTGGGGTT 60.409 42.308 6.24 0.00 0.00 4.11
3824 4974 5.071923 GGTCATTTAGCTAAGATAGTGGGGT 59.928 44.000 6.24 0.00 0.00 4.95
3825 4975 5.513267 GGGTCATTTAGCTAAGATAGTGGGG 60.513 48.000 6.24 0.00 0.00 4.96
3826 4976 5.308237 AGGGTCATTTAGCTAAGATAGTGGG 59.692 44.000 6.24 0.00 0.00 4.61
3827 4977 6.426646 AGGGTCATTTAGCTAAGATAGTGG 57.573 41.667 6.24 0.00 0.00 4.00
3828 4978 8.738645 AAAAGGGTCATTTAGCTAAGATAGTG 57.261 34.615 6.24 3.05 0.00 2.74
3829 4979 9.397280 GAAAAAGGGTCATTTAGCTAAGATAGT 57.603 33.333 6.24 0.00 0.00 2.12
3830 4980 9.620259 AGAAAAAGGGTCATTTAGCTAAGATAG 57.380 33.333 6.24 0.00 0.00 2.08
3832 4982 9.397280 GTAGAAAAAGGGTCATTTAGCTAAGAT 57.603 33.333 6.24 1.27 0.00 2.40
3833 4983 8.603304 AGTAGAAAAAGGGTCATTTAGCTAAGA 58.397 33.333 6.24 0.00 0.00 2.10
3834 4984 8.794335 AGTAGAAAAAGGGTCATTTAGCTAAG 57.206 34.615 6.24 0.00 0.00 2.18
3835 4985 9.886132 CTAGTAGAAAAAGGGTCATTTAGCTAA 57.114 33.333 0.86 0.86 0.00 3.09
3836 4986 9.043548 ACTAGTAGAAAAAGGGTCATTTAGCTA 57.956 33.333 3.59 0.00 0.00 3.32
3837 4987 7.824779 CACTAGTAGAAAAAGGGTCATTTAGCT 59.175 37.037 3.59 0.00 0.00 3.32
3838 4988 7.606839 ACACTAGTAGAAAAAGGGTCATTTAGC 59.393 37.037 3.59 0.00 0.00 3.09
3856 5006 4.691935 GCCATCCCTTCCTCTACACTAGTA 60.692 50.000 0.00 0.00 0.00 1.82
3857 5007 3.917300 CCATCCCTTCCTCTACACTAGT 58.083 50.000 0.00 0.00 0.00 2.57
3858 5008 2.630580 GCCATCCCTTCCTCTACACTAG 59.369 54.545 0.00 0.00 0.00 2.57
3859 5009 2.679082 GCCATCCCTTCCTCTACACTA 58.321 52.381 0.00 0.00 0.00 2.74
3860 5010 1.501582 GCCATCCCTTCCTCTACACT 58.498 55.000 0.00 0.00 0.00 3.55
3861 5011 0.470341 GGCCATCCCTTCCTCTACAC 59.530 60.000 0.00 0.00 0.00 2.90
3862 5012 1.048724 CGGCCATCCCTTCCTCTACA 61.049 60.000 2.24 0.00 0.00 2.74
3863 5013 1.749033 CGGCCATCCCTTCCTCTAC 59.251 63.158 2.24 0.00 0.00 2.59
3864 5014 1.459539 CCGGCCATCCCTTCCTCTA 60.460 63.158 2.24 0.00 0.00 2.43
3865 5015 2.770048 CCGGCCATCCCTTCCTCT 60.770 66.667 2.24 0.00 0.00 3.69
3866 5016 3.878667 CCCGGCCATCCCTTCCTC 61.879 72.222 2.24 0.00 0.00 3.71
3903 5306 1.035385 CCCGGTTCATAAGGCCCAAC 61.035 60.000 0.00 0.00 0.00 3.77
3905 5308 1.616930 TCCCGGTTCATAAGGCCCA 60.617 57.895 0.00 0.00 0.00 5.36
3908 5311 1.828979 TTTGTCCCGGTTCATAAGGC 58.171 50.000 0.00 0.00 0.00 4.35
3909 5312 2.687935 CCATTTGTCCCGGTTCATAAGG 59.312 50.000 0.00 0.00 0.00 2.69
3910 5313 2.099098 GCCATTTGTCCCGGTTCATAAG 59.901 50.000 0.00 0.00 0.00 1.73
3911 5314 2.096248 GCCATTTGTCCCGGTTCATAA 58.904 47.619 0.00 0.00 0.00 1.90
3912 5315 1.683629 GGCCATTTGTCCCGGTTCATA 60.684 52.381 0.00 0.00 0.00 2.15
3913 5316 0.970427 GGCCATTTGTCCCGGTTCAT 60.970 55.000 0.00 0.00 0.00 2.57
3914 5317 1.605165 GGCCATTTGTCCCGGTTCA 60.605 57.895 0.00 0.00 0.00 3.18
3915 5318 2.348104 GGGCCATTTGTCCCGGTTC 61.348 63.158 4.39 0.00 32.00 3.62
3916 5319 2.283604 GGGCCATTTGTCCCGGTT 60.284 61.111 4.39 0.00 32.00 4.44
3920 5323 1.977854 AGAAAAAGGGCCATTTGTCCC 59.022 47.619 25.73 11.52 42.94 4.46
3921 5324 3.832490 AGTAGAAAAAGGGCCATTTGTCC 59.168 43.478 25.73 13.84 28.13 4.02
3922 5325 5.710567 ACTAGTAGAAAAAGGGCCATTTGTC 59.289 40.000 22.82 22.82 0.00 3.18
3923 5326 5.476945 CACTAGTAGAAAAAGGGCCATTTGT 59.523 40.000 17.44 11.46 0.00 2.83
3924 5327 5.476945 ACACTAGTAGAAAAAGGGCCATTTG 59.523 40.000 17.44 3.54 0.00 2.32
3925 5328 5.641155 ACACTAGTAGAAAAAGGGCCATTT 58.359 37.500 10.16 10.16 0.00 2.32
3926 5329 5.256806 ACACTAGTAGAAAAAGGGCCATT 57.743 39.130 6.18 0.00 0.00 3.16
3927 5330 4.929146 ACACTAGTAGAAAAAGGGCCAT 57.071 40.909 6.18 0.00 0.00 4.40
3940 5343 4.481280 ACCATCCCTTCCTCTACACTAGTA 59.519 45.833 0.00 0.00 0.00 1.82
3941 5344 3.272551 ACCATCCCTTCCTCTACACTAGT 59.727 47.826 0.00 0.00 0.00 2.57
3942 5345 3.892588 GACCATCCCTTCCTCTACACTAG 59.107 52.174 0.00 0.00 0.00 2.57
3943 5346 3.687551 CGACCATCCCTTCCTCTACACTA 60.688 52.174 0.00 0.00 0.00 2.74
3944 5347 2.753247 GACCATCCCTTCCTCTACACT 58.247 52.381 0.00 0.00 0.00 3.55
3945 5348 1.409427 CGACCATCCCTTCCTCTACAC 59.591 57.143 0.00 0.00 0.00 2.90
3946 5349 1.688311 CCGACCATCCCTTCCTCTACA 60.688 57.143 0.00 0.00 0.00 2.74
3947 5350 1.041437 CCGACCATCCCTTCCTCTAC 58.959 60.000 0.00 0.00 0.00 2.59
3948 5351 0.105658 CCCGACCATCCCTTCCTCTA 60.106 60.000 0.00 0.00 0.00 2.43
3949 5352 1.383248 CCCGACCATCCCTTCCTCT 60.383 63.158 0.00 0.00 0.00 3.69
3950 5353 2.444256 CCCCGACCATCCCTTCCTC 61.444 68.421 0.00 0.00 0.00 3.71
3951 5354 2.366972 CCCCGACCATCCCTTCCT 60.367 66.667 0.00 0.00 0.00 3.36
3952 5355 4.191015 GCCCCGACCATCCCTTCC 62.191 72.222 0.00 0.00 0.00 3.46
3953 5356 4.547367 CGCCCCGACCATCCCTTC 62.547 72.222 0.00 0.00 0.00 3.46
3972 5375 3.716006 CACTGTCGTTGCTGGCCG 61.716 66.667 0.00 0.00 0.00 6.13
3973 5376 3.357079 CCACTGTCGTTGCTGGCC 61.357 66.667 0.00 0.00 0.00 5.36
3974 5377 2.280797 TCCACTGTCGTTGCTGGC 60.281 61.111 0.00 0.00 0.00 4.85
3975 5378 1.669115 CCTCCACTGTCGTTGCTGG 60.669 63.158 0.00 0.00 0.00 4.85
3976 5379 1.669115 CCCTCCACTGTCGTTGCTG 60.669 63.158 0.00 0.00 0.00 4.41
3977 5380 2.140792 ACCCTCCACTGTCGTTGCT 61.141 57.895 0.00 0.00 0.00 3.91
3978 5381 1.961277 CACCCTCCACTGTCGTTGC 60.961 63.158 0.00 0.00 0.00 4.17
3979 5382 1.301716 CCACCCTCCACTGTCGTTG 60.302 63.158 0.00 0.00 0.00 4.10
3980 5383 1.342672 AACCACCCTCCACTGTCGTT 61.343 55.000 0.00 0.00 0.00 3.85
3981 5384 1.764854 AACCACCCTCCACTGTCGT 60.765 57.895 0.00 0.00 0.00 4.34
3982 5385 1.301716 CAACCACCCTCCACTGTCG 60.302 63.158 0.00 0.00 0.00 4.35
3983 5386 0.035458 CTCAACCACCCTCCACTGTC 59.965 60.000 0.00 0.00 0.00 3.51
3984 5387 1.418908 CCTCAACCACCCTCCACTGT 61.419 60.000 0.00 0.00 0.00 3.55
3985 5388 1.376466 CCTCAACCACCCTCCACTG 59.624 63.158 0.00 0.00 0.00 3.66
3986 5389 1.847968 CCCTCAACCACCCTCCACT 60.848 63.158 0.00 0.00 0.00 4.00
3987 5390 2.757077 CCCTCAACCACCCTCCAC 59.243 66.667 0.00 0.00 0.00 4.02
3988 5391 2.531685 CCCCTCAACCACCCTCCA 60.532 66.667 0.00 0.00 0.00 3.86
3989 5392 2.204090 TCCCCTCAACCACCCTCC 60.204 66.667 0.00 0.00 0.00 4.30
3990 5393 2.301738 CCTCCCCTCAACCACCCTC 61.302 68.421 0.00 0.00 0.00 4.30
3991 5394 2.204151 CCTCCCCTCAACCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
4076 5479 1.974236 CCTATCTTCTTCCTCCCGCAT 59.026 52.381 0.00 0.00 0.00 4.73
4077 5480 1.063190 TCCTATCTTCTTCCTCCCGCA 60.063 52.381 0.00 0.00 0.00 5.69
4079 5482 2.243810 CCTCCTATCTTCTTCCTCCCG 58.756 57.143 0.00 0.00 0.00 5.14
4080 5483 2.180308 TCCCTCCTATCTTCTTCCTCCC 59.820 54.545 0.00 0.00 0.00 4.30
4081 5484 3.141272 TCTCCCTCCTATCTTCTTCCTCC 59.859 52.174 0.00 0.00 0.00 4.30
4082 5485 4.463050 TCTCCCTCCTATCTTCTTCCTC 57.537 50.000 0.00 0.00 0.00 3.71
4083 5486 4.909355 TTCTCCCTCCTATCTTCTTCCT 57.091 45.455 0.00 0.00 0.00 3.36
4084 5487 5.212745 TCTTTCTCCCTCCTATCTTCTTCC 58.787 45.833 0.00 0.00 0.00 3.46
4085 5488 6.609616 TCTTCTTTCTCCCTCCTATCTTCTTC 59.390 42.308 0.00 0.00 0.00 2.87
4086 5489 6.507568 TCTTCTTTCTCCCTCCTATCTTCTT 58.492 40.000 0.00 0.00 0.00 2.52
4087 5490 6.098716 TCTTCTTTCTCCCTCCTATCTTCT 57.901 41.667 0.00 0.00 0.00 2.85
4090 5493 6.036926 TCATCTTCTTTCTCCCTCCTATCT 57.963 41.667 0.00 0.00 0.00 1.98
4091 5494 6.098982 TGTTCATCTTCTTTCTCCCTCCTATC 59.901 42.308 0.00 0.00 0.00 2.08
4094 5497 4.171234 TGTTCATCTTCTTTCTCCCTCCT 58.829 43.478 0.00 0.00 0.00 3.69
4095 5498 4.559862 TGTTCATCTTCTTTCTCCCTCC 57.440 45.455 0.00 0.00 0.00 4.30
4096 5499 7.334858 AGTATTGTTCATCTTCTTTCTCCCTC 58.665 38.462 0.00 0.00 0.00 4.30
4097 5500 7.264294 AGTATTGTTCATCTTCTTTCTCCCT 57.736 36.000 0.00 0.00 0.00 4.20
4123 5526 9.443323 TCTTCATCCAAACGTTCAAAATAGATA 57.557 29.630 0.00 0.00 0.00 1.98
4134 5537 3.139077 GTCCAGTCTTCATCCAAACGTT 58.861 45.455 0.00 0.00 0.00 3.99
4135 5538 2.767505 GTCCAGTCTTCATCCAAACGT 58.232 47.619 0.00 0.00 0.00 3.99
4138 5541 1.697432 ACCGTCCAGTCTTCATCCAAA 59.303 47.619 0.00 0.00 0.00 3.28
4139 5542 1.275291 GACCGTCCAGTCTTCATCCAA 59.725 52.381 0.00 0.00 33.79 3.53
4155 5558 8.153479 TCATCAATCACTTTTTATATGGACCG 57.847 34.615 0.00 0.00 0.00 4.79
4188 5591 5.710099 CCTCTATTTGTTAGGTGCCTGAAAA 59.290 40.000 0.12 0.00 0.00 2.29
4198 5601 4.200092 GTTGGGAGCCTCTATTTGTTAGG 58.800 47.826 0.00 0.00 0.00 2.69
4201 5604 3.806949 TGTTGGGAGCCTCTATTTGTT 57.193 42.857 0.00 0.00 0.00 2.83
4203 5606 6.773976 TTATTTGTTGGGAGCCTCTATTTG 57.226 37.500 0.00 0.00 0.00 2.32
4229 5632 4.389374 TGGATCTTTGAGATTTATCGGGC 58.611 43.478 0.00 0.00 34.53 6.13
4231 5634 8.715998 CACTAATGGATCTTTGAGATTTATCGG 58.284 37.037 0.00 0.00 34.53 4.18
4232 5635 9.265901 ACACTAATGGATCTTTGAGATTTATCG 57.734 33.333 0.00 0.00 34.53 2.92
4242 5645 5.865552 CCAAGCAAACACTAATGGATCTTTG 59.134 40.000 0.00 0.00 0.00 2.77
4255 5658 1.005294 CGCAGATGCCAAGCAAACAC 61.005 55.000 0.00 0.00 43.62 3.32
4272 5675 6.475727 TCAAAGTCATACTAAAGCATACTCGC 59.524 38.462 0.00 0.00 0.00 5.03
4318 5721 2.396608 CACTCATGACTCATCTCCCCT 58.603 52.381 0.00 0.00 0.00 4.79
4322 5725 4.462508 TGTTCCACTCATGACTCATCTC 57.537 45.455 0.00 0.00 0.00 2.75
4323 5726 5.163364 GGTATGTTCCACTCATGACTCATCT 60.163 44.000 0.00 0.00 0.00 2.90
4324 5727 5.053145 GGTATGTTCCACTCATGACTCATC 58.947 45.833 0.00 0.00 0.00 2.92
4325 5728 4.471025 TGGTATGTTCCACTCATGACTCAT 59.529 41.667 0.00 0.00 31.96 2.90
4326 5729 3.837731 TGGTATGTTCCACTCATGACTCA 59.162 43.478 0.00 0.00 31.96 3.41
4327 5730 4.471904 TGGTATGTTCCACTCATGACTC 57.528 45.455 0.00 0.00 31.96 3.36
4328 5731 6.560003 TTATGGTATGTTCCACTCATGACT 57.440 37.500 0.00 0.00 40.51 3.41
4329 5732 7.624360 TTTTATGGTATGTTCCACTCATGAC 57.376 36.000 0.00 0.00 40.51 3.06
4330 5733 8.106462 TCTTTTTATGGTATGTTCCACTCATGA 58.894 33.333 0.00 0.00 40.51 3.07
4331 5734 8.184192 GTCTTTTTATGGTATGTTCCACTCATG 58.816 37.037 0.00 0.00 40.51 3.07
4346 5749 3.670627 GCTGTGCGGAAGTCTTTTTATGG 60.671 47.826 0.00 0.00 0.00 2.74
4347 5750 3.189287 AGCTGTGCGGAAGTCTTTTTATG 59.811 43.478 0.00 0.00 0.00 1.90
4349 5752 2.806244 GAGCTGTGCGGAAGTCTTTTTA 59.194 45.455 0.00 0.00 0.00 1.52
4355 5758 0.246635 TAAGGAGCTGTGCGGAAGTC 59.753 55.000 0.00 0.00 0.00 3.01
4356 5759 0.247736 CTAAGGAGCTGTGCGGAAGT 59.752 55.000 0.00 0.00 0.00 3.01
4357 5760 0.532573 TCTAAGGAGCTGTGCGGAAG 59.467 55.000 0.00 0.00 0.00 3.46
4358 5761 0.532573 CTCTAAGGAGCTGTGCGGAA 59.467 55.000 0.00 0.00 32.43 4.30
4361 5764 2.159184 TCATTCTCTAAGGAGCTGTGCG 60.159 50.000 0.00 0.00 39.31 5.34
4393 5797 5.432157 CGACCGAGCACACATAAATTATTC 58.568 41.667 0.00 0.00 0.00 1.75
4402 5806 2.125912 GAGCGACCGAGCACACAT 60.126 61.111 0.00 0.00 40.15 3.21
4403 5807 4.700365 CGAGCGACCGAGCACACA 62.700 66.667 0.00 0.00 40.15 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.