Multiple sequence alignment - TraesCS1D01G282900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G282900 chr1D 100.000 7753 0 0 1 7753 381009183 381016935 0.000000e+00 14318.0
1 TraesCS1D01G282900 chr1D 91.089 101 9 0 6902 7002 381016184 381016084 3.770000e-28 137.0
2 TraesCS1D01G282900 chr1D 83.810 105 13 3 1903 2006 470186057 470185956 6.400000e-16 97.1
3 TraesCS1D01G282900 chr1A 96.218 1798 53 6 2952 4743 481651240 481653028 0.000000e+00 2929.0
4 TraesCS1D01G282900 chr1A 94.130 937 42 7 5827 6751 481654299 481655234 0.000000e+00 1413.0
5 TraesCS1D01G282900 chr1A 95.782 806 32 2 4771 5576 481653115 481653918 0.000000e+00 1299.0
6 TraesCS1D01G282900 chr1A 89.989 939 68 12 1938 2855 481650043 481650976 0.000000e+00 1190.0
7 TraesCS1D01G282900 chr1A 91.798 634 25 14 7094 7719 481671131 481671745 0.000000e+00 857.0
8 TraesCS1D01G282900 chr1A 91.121 642 35 5 1327 1949 481649382 481650020 0.000000e+00 850.0
9 TraesCS1D01G282900 chr1A 88.399 431 23 17 195 613 481648371 481648786 1.940000e-135 494.0
10 TraesCS1D01G282900 chr1A 91.837 294 20 2 6998 7290 481655314 481655604 2.600000e-109 407.0
11 TraesCS1D01G282900 chr1A 93.000 200 9 3 836 1033 481648937 481649133 3.540000e-73 287.0
12 TraesCS1D01G282900 chr1A 93.578 109 5 2 5627 5734 481654021 481654128 2.240000e-35 161.0
13 TraesCS1D01G282900 chr1A 93.519 108 5 1 2853 2958 481651099 481651206 8.050000e-35 159.0
14 TraesCS1D01G282900 chr1A 90.265 113 10 1 5717 5828 481654140 481654252 6.270000e-31 147.0
15 TraesCS1D01G282900 chr1A 88.350 103 10 2 22 123 481648270 481648371 1.060000e-23 122.0
16 TraesCS1D01G282900 chr1A 86.777 121 3 5 7276 7396 481655812 481655919 1.060000e-23 122.0
17 TraesCS1D01G282900 chr1A 96.154 52 2 0 5577 5628 481653943 481653994 1.390000e-12 86.1
18 TraesCS1D01G282900 chr1A 81.818 99 5 4 6903 7001 18309782 18309697 3.880000e-08 71.3
19 TraesCS1D01G282900 chr1A 81.818 99 5 6 6903 7001 18309697 18309782 3.880000e-08 71.3
20 TraesCS1D01G282900 chr1A 86.364 66 8 1 6838 6902 481655248 481655313 3.880000e-08 71.3
21 TraesCS1D01G282900 chr1B 93.575 1790 75 15 2959 4743 510799275 510801029 0.000000e+00 2632.0
22 TraesCS1D01G282900 chr1B 90.246 1220 60 26 763 1968 510796959 510798133 0.000000e+00 1539.0
23 TraesCS1D01G282900 chr1B 91.376 1090 44 26 4771 5826 510801114 510802187 0.000000e+00 1447.0
24 TraesCS1D01G282900 chr1B 93.578 981 46 6 5827 6792 510802236 510803214 0.000000e+00 1447.0
25 TraesCS1D01G282900 chr1B 91.339 762 32 11 7005 7753 510803621 510804361 0.000000e+00 1011.0
26 TraesCS1D01G282900 chr1B 85.030 835 74 19 2109 2900 510798269 510799095 0.000000e+00 802.0
27 TraesCS1D01G282900 chr1B 89.419 482 22 15 22 490 510796262 510796727 1.450000e-161 580.0
28 TraesCS1D01G282900 chr1B 81.553 103 15 4 6901 7002 20568357 20568456 1.790000e-11 82.4
29 TraesCS1D01G282900 chr3D 82.971 781 129 4 3675 4453 465075520 465074742 0.000000e+00 702.0
30 TraesCS1D01G282900 chr3D 84.536 97 2 6 6902 6998 605319414 605319497 4.990000e-12 84.2
31 TraesCS1D01G282900 chr3A 82.759 783 127 7 3675 4453 608381901 608381123 0.000000e+00 691.0
32 TraesCS1D01G282900 chr3A 85.897 78 8 2 1933 2007 420739436 420739359 6.450000e-11 80.5
33 TraesCS1D01G282900 chr3A 83.784 74 7 3 1898 1966 149572064 149571991 1.810000e-06 65.8
34 TraesCS1D01G282900 chr7A 81.029 875 107 31 2109 2954 25374427 25373583 6.560000e-180 641.0
35 TraesCS1D01G282900 chr7A 88.010 392 35 7 2959 3348 25373538 25373157 3.300000e-123 453.0
36 TraesCS1D01G282900 chr6B 85.377 212 29 2 3520 3729 628813840 628813629 1.310000e-52 219.0
37 TraesCS1D01G282900 chr6B 85.106 94 9 3 1903 1996 704888024 704888112 2.980000e-14 91.6
38 TraesCS1D01G282900 chr6B 86.667 60 6 1 1903 1962 39206794 39206737 1.810000e-06 65.8
39 TraesCS1D01G282900 chr3B 91.045 67 6 0 1933 1999 525155810 525155876 2.980000e-14 91.6
40 TraesCS1D01G282900 chr3B 87.179 78 7 2 1933 2007 409544008 409543931 1.390000e-12 86.1
41 TraesCS1D01G282900 chr3B 90.000 50 3 1 1900 1949 821043031 821043078 6.490000e-06 63.9
42 TraesCS1D01G282900 chr5B 94.737 57 3 0 1938 1994 387741671 387741727 1.070000e-13 89.8
43 TraesCS1D01G282900 chr2B 83.178 107 5 2 6895 7001 214312121 214312028 1.390000e-12 86.1
44 TraesCS1D01G282900 chr2B 90.164 61 6 0 1933 1993 572791116 572791176 6.450000e-11 80.5
45 TraesCS1D01G282900 chr2B 94.231 52 2 1 6902 6953 37716883 37716833 2.320000e-10 78.7
46 TraesCS1D01G282900 chr2B 95.652 46 2 0 6903 6948 659780771 659780816 3.000000e-09 75.0
47 TraesCS1D01G282900 chr2B 95.556 45 2 0 6957 7001 659780815 659780771 1.080000e-08 73.1
48 TraesCS1D01G282900 chrUn 83.495 103 4 6 6902 7004 258942004 258941915 4.990000e-12 84.2
49 TraesCS1D01G282900 chr2A 100.000 42 0 0 6903 6944 651829781 651829740 2.320000e-10 78.7
50 TraesCS1D01G282900 chr2A 81.905 105 5 7 6897 7001 618434137 618434227 8.340000e-10 76.8
51 TraesCS1D01G282900 chr2A 85.135 74 6 4 1898 1966 639281135 639281062 3.880000e-08 71.3
52 TraesCS1D01G282900 chr2A 87.931 58 5 1 1903 1960 54460590 54460645 5.020000e-07 67.6
53 TraesCS1D01G282900 chr2A 95.238 42 2 0 6960 7001 651829740 651829781 5.020000e-07 67.6
54 TraesCS1D01G282900 chr5D 95.745 47 2 0 6956 7002 108560178 108560224 8.340000e-10 76.8
55 TraesCS1D01G282900 chr5D 95.652 46 2 0 6902 6947 108560224 108560179 3.000000e-09 75.0
56 TraesCS1D01G282900 chr6D 97.674 43 1 0 6902 6944 97351880 97351838 3.000000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G282900 chr1D 381009183 381016935 7752 False 14318.000000 14318 100.000000 1 7753 1 chr1D.!!$F1 7752
1 TraesCS1D01G282900 chr1A 481671131 481671745 614 False 857.000000 857 91.798000 7094 7719 1 chr1A.!!$F2 625
2 TraesCS1D01G282900 chr1A 481648270 481655919 7649 False 649.160000 2929 91.698867 22 7396 15 chr1A.!!$F3 7374
3 TraesCS1D01G282900 chr1B 510796262 510804361 8099 False 1351.142857 2632 90.651857 22 7753 7 chr1B.!!$F2 7731
4 TraesCS1D01G282900 chr3D 465074742 465075520 778 True 702.000000 702 82.971000 3675 4453 1 chr3D.!!$R1 778
5 TraesCS1D01G282900 chr3A 608381123 608381901 778 True 691.000000 691 82.759000 3675 4453 1 chr3A.!!$R3 778
6 TraesCS1D01G282900 chr7A 25373157 25374427 1270 True 547.000000 641 84.519500 2109 3348 2 chr7A.!!$R1 1239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 1035 0.037734 CCCCGGTAAAAACAGAGGCT 59.962 55.0 0.0 0.0 0.00 4.58 F
1621 1690 0.035881 TCTCCTGGCACTGCTGAAAG 59.964 55.0 0.0 0.0 0.00 2.62 F
1873 1960 0.179020 TCCTTGCCCTATGAATGCCG 60.179 55.0 0.0 0.0 0.00 5.69 F
2502 2624 0.249120 TATGCAAGCTGTACGCACCT 59.751 50.0 11.3 0.0 42.61 4.00 F
2515 2638 1.167851 CGCACCTGTCACATCCAATT 58.832 50.0 0.0 0.0 0.00 2.32 F
3661 4090 2.350863 ATCTCCCTGACAACTCCCTT 57.649 50.0 0.0 0.0 0.00 3.95 F
4500 4929 1.024271 GCAGAAGGACAACACTTGCA 58.976 50.0 0.0 0.0 0.00 4.08 F
4787 5280 0.179004 TGGGTCATCTTTTGCGTGGT 60.179 50.0 0.0 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 1955 0.247185 CATCAAAAACTGCCCGGCAT 59.753 50.000 13.86 0.0 38.13 4.40 R
3145 3570 0.617413 CCTGTCTGCCTGGAACATCT 59.383 55.000 0.00 0.0 38.20 2.90 R
3797 4226 0.539051 CAGGAGGACCTACAAGCAGG 59.461 60.000 6.47 0.0 45.94 4.85 R
3908 4337 0.611200 TGGATGGTCCAACACCTACG 59.389 55.000 0.00 0.0 45.00 3.51 R
4486 4915 1.956477 GGAACATGCAAGTGTTGTCCT 59.044 47.619 10.33 0.0 42.08 3.85 R
4768 5232 0.179004 ACCACGCAAAAGATGACCCA 60.179 50.000 0.00 0.0 0.00 4.51 R
6359 6999 0.107703 CATTCTTGGCGGGCTCTGTA 60.108 55.000 2.38 0.0 0.00 2.74 R
6774 7419 0.320374 TCCAACTCGTTCGGCTTGAT 59.680 50.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.441244 GCTTTTGCCCTTATGCACC 57.559 52.632 0.00 0.00 41.88 5.01
24 25 0.108186 GCTTTTGCCCTTATGCACCC 60.108 55.000 0.00 0.00 41.88 4.61
25 26 1.560505 CTTTTGCCCTTATGCACCCT 58.439 50.000 0.00 0.00 41.88 4.34
26 27 1.478105 CTTTTGCCCTTATGCACCCTC 59.522 52.381 0.00 0.00 41.88 4.30
38 39 2.036256 ACCCTCCATGCACCTTGC 59.964 61.111 0.00 0.00 45.29 4.01
51 52 0.540365 ACCTTGCCAATCACACCCTG 60.540 55.000 0.00 0.00 0.00 4.45
123 125 0.856982 TCCCAAGGAGGCAAAGGAAA 59.143 50.000 0.00 0.00 35.39 3.13
170 172 2.890474 GCCCACACGCAGATACGG 60.890 66.667 0.00 0.00 37.37 4.02
171 173 2.890474 CCCACACGCAGATACGGC 60.890 66.667 0.00 0.00 37.37 5.68
172 174 2.125713 CCACACGCAGATACGGCA 60.126 61.111 0.00 0.00 37.37 5.69
173 175 2.452813 CCACACGCAGATACGGCAC 61.453 63.158 0.00 0.00 37.37 5.01
188 190 4.012895 CACGCACGCACAGTTCCC 62.013 66.667 0.00 0.00 0.00 3.97
189 191 4.539083 ACGCACGCACAGTTCCCA 62.539 61.111 0.00 0.00 0.00 4.37
190 192 4.012895 CGCACGCACAGTTCCCAC 62.013 66.667 0.00 0.00 0.00 4.61
193 195 3.168528 ACGCACAGTTCCCACCCT 61.169 61.111 0.00 0.00 0.00 4.34
260 263 2.633509 GGCAAGCCAAGTCTGCCTG 61.634 63.158 6.14 0.00 41.99 4.85
261 264 2.960170 CAAGCCAAGTCTGCCTGC 59.040 61.111 0.00 0.00 0.00 4.85
262 265 2.282745 AAGCCAAGTCTGCCTGCC 60.283 61.111 0.00 0.00 0.00 4.85
263 266 3.137385 AAGCCAAGTCTGCCTGCCA 62.137 57.895 0.00 0.00 0.00 4.92
264 267 3.060615 GCCAAGTCTGCCTGCCAG 61.061 66.667 0.00 0.00 43.17 4.85
370 377 1.739707 GCTGTCTCTGTCAGATGCTGG 60.740 57.143 2.22 0.00 35.20 4.85
455 467 5.253330 TCAGAAAGAACAAACAGTTGGACT 58.747 37.500 0.00 0.00 41.51 3.85
482 494 0.376852 TGACACGTTTCAGCTTGCAC 59.623 50.000 0.00 0.00 0.00 4.57
522 534 8.990163 ACCTAAAAAGGTGAAAAACTGATCTA 57.010 30.769 0.00 0.00 41.33 1.98
523 535 8.847196 ACCTAAAAAGGTGAAAAACTGATCTAC 58.153 33.333 0.00 0.00 41.33 2.59
524 536 9.067986 CCTAAAAAGGTGAAAAACTGATCTACT 57.932 33.333 0.00 0.00 0.00 2.57
526 538 8.519799 AAAAAGGTGAAAAACTGATCTACTCA 57.480 30.769 0.00 0.00 0.00 3.41
530 542 9.793259 AAGGTGAAAAACTGATCTACTCATAAA 57.207 29.630 0.00 0.00 32.10 1.40
550 562 9.012161 TCATAAATCACAATCACAATCACAAGA 57.988 29.630 0.00 0.00 0.00 3.02
551 563 9.285770 CATAAATCACAATCACAATCACAAGAG 57.714 33.333 0.00 0.00 0.00 2.85
567 579 7.792374 TCACAAGAGGCTGATATTTATGTTC 57.208 36.000 0.00 0.00 0.00 3.18
590 609 6.766429 TCTATACTTGGAGTACTATCTCGCA 58.234 40.000 0.00 0.00 32.84 5.10
604 623 3.123620 CGCAGTCAGCTCCCTTGC 61.124 66.667 0.00 0.00 42.61 4.01
612 631 2.039418 TCAGCTCCCTTGCATACGTAT 58.961 47.619 1.14 1.14 34.99 3.06
613 632 3.005472 GTCAGCTCCCTTGCATACGTATA 59.995 47.826 7.96 0.00 34.99 1.47
617 636 6.154534 TCAGCTCCCTTGCATACGTATATTAT 59.845 38.462 7.96 0.00 34.99 1.28
618 637 6.477033 CAGCTCCCTTGCATACGTATATTATC 59.523 42.308 7.96 0.00 34.99 1.75
619 638 5.753921 GCTCCCTTGCATACGTATATTATCC 59.246 44.000 7.96 0.00 0.00 2.59
622 641 8.777578 TCCCTTGCATACGTATATTATCCTAT 57.222 34.615 7.96 0.00 0.00 2.57
623 642 8.638873 TCCCTTGCATACGTATATTATCCTATG 58.361 37.037 7.96 0.00 0.00 2.23
624 643 7.872993 CCCTTGCATACGTATATTATCCTATGG 59.127 40.741 7.96 0.74 0.00 2.74
625 644 8.421784 CCTTGCATACGTATATTATCCTATGGT 58.578 37.037 7.96 0.00 0.00 3.55
659 678 3.377346 ACTAATCTCGGCTGCAGTATG 57.623 47.619 16.64 5.61 40.87 2.39
661 680 0.833287 AATCTCGGCTGCAGTATGGT 59.167 50.000 16.64 0.00 35.86 3.55
662 681 1.704641 ATCTCGGCTGCAGTATGGTA 58.295 50.000 16.64 0.00 35.86 3.25
663 682 1.704641 TCTCGGCTGCAGTATGGTAT 58.295 50.000 16.64 0.00 35.86 2.73
664 683 2.871453 TCTCGGCTGCAGTATGGTATA 58.129 47.619 16.64 0.00 35.86 1.47
665 684 3.227614 TCTCGGCTGCAGTATGGTATAA 58.772 45.455 16.64 0.00 35.86 0.98
666 685 3.639561 TCTCGGCTGCAGTATGGTATAAA 59.360 43.478 16.64 0.00 35.86 1.40
667 686 4.100344 TCTCGGCTGCAGTATGGTATAAAA 59.900 41.667 16.64 0.00 35.86 1.52
668 687 4.771903 TCGGCTGCAGTATGGTATAAAAA 58.228 39.130 16.64 0.00 35.86 1.94
669 688 4.814234 TCGGCTGCAGTATGGTATAAAAAG 59.186 41.667 16.64 0.00 35.86 2.27
670 689 4.814234 CGGCTGCAGTATGGTATAAAAAGA 59.186 41.667 16.64 0.00 35.86 2.52
671 690 5.470098 CGGCTGCAGTATGGTATAAAAAGAT 59.530 40.000 16.64 0.00 35.86 2.40
672 691 6.649141 CGGCTGCAGTATGGTATAAAAAGATA 59.351 38.462 16.64 0.00 35.86 1.98
673 692 7.172532 CGGCTGCAGTATGGTATAAAAAGATAA 59.827 37.037 16.64 0.00 35.86 1.75
674 693 8.846211 GGCTGCAGTATGGTATAAAAAGATAAA 58.154 33.333 16.64 0.00 35.86 1.40
689 708 7.812309 AAAAGATAAAACTAATTTCGGCTGC 57.188 32.000 0.00 0.00 32.27 5.25
690 709 6.509418 AAGATAAAACTAATTTCGGCTGCA 57.491 33.333 0.50 0.00 32.27 4.41
691 710 6.124088 AGATAAAACTAATTTCGGCTGCAG 57.876 37.500 10.11 10.11 32.27 4.41
692 711 5.648092 AGATAAAACTAATTTCGGCTGCAGT 59.352 36.000 16.64 0.00 32.27 4.40
693 712 6.821665 AGATAAAACTAATTTCGGCTGCAGTA 59.178 34.615 16.64 0.00 32.27 2.74
694 713 5.897377 AAAACTAATTTCGGCTGCAGTAT 57.103 34.783 16.64 0.00 0.00 2.12
695 714 5.485662 AAACTAATTTCGGCTGCAGTATC 57.514 39.130 16.64 4.73 0.00 2.24
696 715 4.137116 ACTAATTTCGGCTGCAGTATCA 57.863 40.909 16.64 0.00 0.00 2.15
701 720 1.725641 TCGGCTGCAGTATCAAACAG 58.274 50.000 16.64 0.00 0.00 3.16
703 722 0.453390 GGCTGCAGTATCAAACAGGC 59.547 55.000 16.64 0.00 46.45 4.85
707 726 1.073763 TGCAGTATCAAACAGGCAGGT 59.926 47.619 0.00 0.00 36.22 4.00
718 737 2.260822 ACAGGCAGGTAGTTCATCACT 58.739 47.619 0.00 0.00 39.87 3.41
724 743 3.775202 CAGGTAGTTCATCACTCGGAAG 58.225 50.000 0.00 0.00 36.88 3.46
731 750 2.416747 TCATCACTCGGAAGCAAACAG 58.583 47.619 0.00 0.00 0.00 3.16
750 791 1.092348 GCCCCTATTTTCGTCCACAC 58.908 55.000 0.00 0.00 0.00 3.82
973 1028 1.300971 GGTCTCGCCCCGGTAAAAAC 61.301 60.000 0.00 0.00 0.00 2.43
975 1030 0.320946 TCTCGCCCCGGTAAAAACAG 60.321 55.000 0.00 0.00 0.00 3.16
976 1031 0.320946 CTCGCCCCGGTAAAAACAGA 60.321 55.000 0.00 0.00 0.00 3.41
979 1034 1.592400 GCCCCGGTAAAAACAGAGGC 61.592 60.000 0.00 0.00 0.00 4.70
980 1035 0.037734 CCCCGGTAAAAACAGAGGCT 59.962 55.000 0.00 0.00 0.00 4.58
981 1036 1.450025 CCCGGTAAAAACAGAGGCTC 58.550 55.000 6.34 6.34 0.00 4.70
1024 1081 4.208686 CGGCGCCTCCTACACCTC 62.209 72.222 26.68 0.00 0.00 3.85
1025 1082 3.851128 GGCGCCTCCTACACCTCC 61.851 72.222 22.15 0.00 0.00 4.30
1026 1083 3.075005 GCGCCTCCTACACCTCCA 61.075 66.667 0.00 0.00 0.00 3.86
1027 1084 2.893398 CGCCTCCTACACCTCCAC 59.107 66.667 0.00 0.00 0.00 4.02
1028 1085 2.722201 CGCCTCCTACACCTCCACC 61.722 68.421 0.00 0.00 0.00 4.61
1029 1086 1.306226 GCCTCCTACACCTCCACCT 60.306 63.158 0.00 0.00 0.00 4.00
1030 1087 1.331399 GCCTCCTACACCTCCACCTC 61.331 65.000 0.00 0.00 0.00 3.85
1031 1088 0.688087 CCTCCTACACCTCCACCTCC 60.688 65.000 0.00 0.00 0.00 4.30
1032 1089 0.041238 CTCCTACACCTCCACCTCCA 59.959 60.000 0.00 0.00 0.00 3.86
1098 1155 2.704065 ACCGGAACAAGAAGAGGAGAAA 59.296 45.455 9.46 0.00 0.00 2.52
1099 1156 3.135895 ACCGGAACAAGAAGAGGAGAAAA 59.864 43.478 9.46 0.00 0.00 2.29
1106 1163 5.126779 ACAAGAAGAGGAGAAAAAGGACAC 58.873 41.667 0.00 0.00 0.00 3.67
1185 1242 2.202623 CGTCGTGGTCCTAGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
1186 1243 2.970639 GTCGTGGTCCTAGCAGCA 59.029 61.111 0.00 0.00 0.00 4.41
1187 1244 1.153745 GTCGTGGTCCTAGCAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
1278 1341 4.838486 CCGCACGCCGTCTCTCTC 62.838 72.222 0.00 0.00 34.38 3.20
1285 1348 2.830285 GCCGTCTCTCTCTCTCCGC 61.830 68.421 0.00 0.00 0.00 5.54
1321 1384 2.115910 TGGGCCAGGCTCACAAAG 59.884 61.111 11.14 0.00 32.27 2.77
1322 1385 2.677875 GGGCCAGGCTCACAAAGG 60.678 66.667 12.43 0.00 0.00 3.11
1323 1386 2.116125 GGCCAGGCTCACAAAGGT 59.884 61.111 12.43 0.00 0.00 3.50
1324 1387 1.973812 GGCCAGGCTCACAAAGGTC 60.974 63.158 12.43 0.00 0.00 3.85
1325 1388 1.073897 GCCAGGCTCACAAAGGTCT 59.926 57.895 3.29 0.00 0.00 3.85
1581 1650 1.297378 GCCGTCGCGCCTTATTTTC 60.297 57.895 0.00 0.00 0.00 2.29
1621 1690 0.035881 TCTCCTGGCACTGCTGAAAG 59.964 55.000 0.00 0.00 0.00 2.62
1623 1692 0.250467 TCCTGGCACTGCTGAAAGAC 60.250 55.000 0.00 0.00 34.07 3.01
1740 1809 2.817423 CGCCGCCTTTCTCATCTGC 61.817 63.158 0.00 0.00 0.00 4.26
1746 1815 2.139118 GCCTTTCTCATCTGCGTATCC 58.861 52.381 0.00 0.00 0.00 2.59
1752 1821 3.023832 TCTCATCTGCGTATCCTGTTCA 58.976 45.455 0.00 0.00 0.00 3.18
1772 1842 5.447624 TCATGTAGAGAAGTTGTGTCGAA 57.552 39.130 0.00 0.00 0.00 3.71
1781 1851 3.685139 AGTTGTGTCGAATCCAGTGAT 57.315 42.857 0.00 0.00 0.00 3.06
1868 1955 4.722220 CAATGATCTCCTTGCCCTATGAA 58.278 43.478 0.00 0.00 0.00 2.57
1873 1960 0.179020 TCCTTGCCCTATGAATGCCG 60.179 55.000 0.00 0.00 0.00 5.69
1883 1971 0.975887 ATGAATGCCGGGCAGTTTTT 59.024 45.000 27.62 16.42 43.65 1.94
1914 2002 5.132144 ACAATGGAATAATACTCCCTCCGTT 59.868 40.000 0.00 0.00 36.12 4.44
1934 2022 8.223177 TCCGTTCCAAATTACTTGTCTTAAAA 57.777 30.769 0.00 0.00 32.65 1.52
1935 2023 8.684520 TCCGTTCCAAATTACTTGTCTTAAAAA 58.315 29.630 0.00 0.00 32.65 1.94
1936 2024 8.748582 CCGTTCCAAATTACTTGTCTTAAAAAC 58.251 33.333 0.00 0.00 32.65 2.43
1939 2027 8.844441 TCCAAATTACTTGTCTTAAAAACGTG 57.156 30.769 0.00 0.00 32.65 4.49
1941 2029 8.739461 CCAAATTACTTGTCTTAAAAACGTGTC 58.261 33.333 0.00 0.00 32.65 3.67
1945 2064 9.754382 ATTACTTGTCTTAAAAACGTGTCTAGA 57.246 29.630 0.00 0.00 0.00 2.43
2012 2131 7.342284 ACGGAGGTAATAGGATATAACTGGATG 59.658 40.741 0.00 0.00 0.00 3.51
2064 2183 6.017357 GGTAGTTTAACTTGTCAGTTCCAAGG 60.017 42.308 1.94 0.00 42.66 3.61
2073 2192 1.531602 AGTTCCAAGGGCTGCCAAC 60.532 57.895 22.05 15.24 0.00 3.77
2079 2198 0.752054 CAAGGGCTGCCAACTTCAAA 59.248 50.000 22.05 0.00 0.00 2.69
2092 2211 5.390145 GCCAACTTCAAATGTGATGAAATGC 60.390 40.000 5.80 0.24 36.43 3.56
2131 2250 5.536554 ACTTCTAGTGTGATGAAATTGCG 57.463 39.130 0.00 0.00 0.00 4.85
2137 2256 5.633830 AGTGTGATGAAATTGCGATTCTT 57.366 34.783 0.00 0.00 0.00 2.52
2293 2412 6.023603 AGACCAGAAGGAGGTAGTTTTCATA 58.976 40.000 0.00 0.00 40.09 2.15
2324 2443 4.926860 GCAAATTGGCCATAAAGTGTTC 57.073 40.909 6.09 0.00 0.00 3.18
2353 2474 9.436957 AACTGTTCACTAATATGTTTACTCTGG 57.563 33.333 0.00 0.00 0.00 3.86
2400 2521 9.979578 TTTGTTCTGTTGTCAAATATATTTGCT 57.020 25.926 26.67 0.00 45.06 3.91
2429 2551 8.801882 TTTGTCGAATCCCTAAATCATTACTT 57.198 30.769 0.00 0.00 0.00 2.24
2456 2578 2.504175 TCGAGAACCCCAGGAAAATAGG 59.496 50.000 0.00 0.00 0.00 2.57
2498 2620 0.931005 GGACTATGCAAGCTGTACGC 59.069 55.000 0.00 2.08 39.57 4.42
2502 2624 0.249120 TATGCAAGCTGTACGCACCT 59.751 50.000 11.30 0.00 42.61 4.00
2503 2625 1.300971 ATGCAAGCTGTACGCACCTG 61.301 55.000 11.30 7.08 42.61 4.00
2504 2626 1.961277 GCAAGCTGTACGCACCTGT 60.961 57.895 11.30 0.00 42.61 4.00
2508 2631 1.300620 GCTGTACGCACCTGTCACA 60.301 57.895 5.07 0.00 38.92 3.58
2515 2638 1.167851 CGCACCTGTCACATCCAATT 58.832 50.000 0.00 0.00 0.00 2.32
2652 2802 9.639601 CTCTGTAGATGTTTAAGTAATGTGTGA 57.360 33.333 0.00 0.00 0.00 3.58
2697 2847 7.662669 AGCACACTGTGATCAATATGCAATATA 59.337 33.333 15.86 0.00 35.35 0.86
2846 3022 3.753842 CAATATGTTAACGTGCGCCTTT 58.246 40.909 10.68 0.00 0.00 3.11
2866 3167 9.285770 CGCCTTTTATTTGTAGTTTTCTATTCC 57.714 33.333 0.00 0.00 34.69 3.01
3579 4008 5.869579 ACTGAAAAGTAATTCTGGAGCTCA 58.130 37.500 17.19 0.61 33.88 4.26
3583 4012 5.966742 AAAGTAATTCTGGAGCTCAAACC 57.033 39.130 17.19 0.00 0.00 3.27
3603 4032 5.182169 ACCGTCCCCATTGTTTAGATTTA 57.818 39.130 0.00 0.00 0.00 1.40
3637 4066 6.569179 AGCTTTTGGTTTACACGATATTGT 57.431 33.333 0.00 0.00 0.00 2.71
3661 4090 2.350863 ATCTCCCTGACAACTCCCTT 57.649 50.000 0.00 0.00 0.00 3.95
3673 4102 3.295973 CAACTCCCTTTCTTTGGTTGGA 58.704 45.455 0.00 0.00 32.96 3.53
3908 4337 5.102313 GGTTCCGATTTCATGGAAATGTTC 58.898 41.667 8.78 0.00 45.35 3.18
3950 4379 6.599638 CCAGGGTAAGAAACTTATTCCAAGAG 59.400 42.308 0.00 0.00 0.00 2.85
4471 4900 9.944663 GGTAACATGATCGAATGCTATTTTAAA 57.055 29.630 0.00 0.00 0.00 1.52
4486 4915 8.140628 TGCTATTTTAAACATTTGTGAGCAGAA 58.859 29.630 0.00 0.00 32.73 3.02
4498 4927 2.289002 GTGAGCAGAAGGACAACACTTG 59.711 50.000 0.00 0.00 0.00 3.16
4499 4928 1.265365 GAGCAGAAGGACAACACTTGC 59.735 52.381 0.00 0.00 0.00 4.01
4500 4929 1.024271 GCAGAAGGACAACACTTGCA 58.976 50.000 0.00 0.00 0.00 4.08
4501 4930 1.610522 GCAGAAGGACAACACTTGCAT 59.389 47.619 0.00 0.00 0.00 3.96
4502 4931 2.606308 GCAGAAGGACAACACTTGCATG 60.606 50.000 0.00 0.00 0.00 4.06
4503 4932 2.620115 CAGAAGGACAACACTTGCATGT 59.380 45.455 0.00 0.00 0.00 3.21
4504 4933 3.067180 CAGAAGGACAACACTTGCATGTT 59.933 43.478 1.83 0.71 43.67 2.71
4505 4934 3.316308 AGAAGGACAACACTTGCATGTTC 59.684 43.478 1.83 0.00 40.89 3.18
4554 4983 7.561251 ACAAAAGTTGTAGGGTAAAATTTGCT 58.439 30.769 0.00 0.00 43.27 3.91
4636 5065 6.316140 TGATACATGCCTGATTTACACACTTC 59.684 38.462 0.00 0.00 0.00 3.01
4703 5135 3.444742 TGCTTTCATGTGAGCAAATAGGG 59.555 43.478 18.74 0.00 45.19 3.53
4705 5137 4.640201 GCTTTCATGTGAGCAAATAGGGTA 59.360 41.667 15.09 0.00 38.73 3.69
4755 5219 4.535526 ACATGGAATAAAAAGTGTGGCC 57.464 40.909 0.00 0.00 0.00 5.36
4766 5230 1.125711 AGTGTGGCCCGGTTTCTAGT 61.126 55.000 0.00 0.00 0.00 2.57
4768 5232 1.373812 GTGGCCCGGTTTCTAGTGT 59.626 57.895 0.00 0.00 0.00 3.55
4769 5233 0.953960 GTGGCCCGGTTTCTAGTGTG 60.954 60.000 0.00 0.00 0.00 3.82
4787 5280 0.179004 TGGGTCATCTTTTGCGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
4889 5382 5.639506 TGTTGTAGCTTGATTTCTAGCAGAC 59.360 40.000 14.74 12.17 45.01 3.51
5025 5520 0.822164 GCCTCATGCTCCATTTTGCT 59.178 50.000 0.00 0.00 36.87 3.91
5229 5726 3.055385 AGGTAATTAGCAAACTGGAGCGA 60.055 43.478 16.53 0.00 35.48 4.93
5453 5950 1.694693 GGAGGTATGCCCTTCCCTACA 60.695 57.143 0.00 0.00 46.51 2.74
5468 5965 7.448469 CCCTTCCCTACATATTTTTAGTGATGG 59.552 40.741 0.00 0.00 0.00 3.51
5531 6028 7.201145 TCGAAATCTGTACTATTTAGCTCCAC 58.799 38.462 0.00 0.00 0.00 4.02
5547 6044 3.558674 CACTGGTGGATTGTCTCCC 57.441 57.895 0.00 0.00 44.23 4.30
5561 6058 2.906389 TGTCTCCCATCACTAAAGCAGT 59.094 45.455 0.00 0.00 38.32 4.40
5576 6073 7.587757 CACTAAAGCAGTTGTTCAAGTGAATAC 59.412 37.037 20.24 6.21 36.13 1.89
5577 6074 6.449635 AAAGCAGTTGTTCAAGTGAATACA 57.550 33.333 20.24 0.00 36.33 2.29
5578 6075 5.679734 AGCAGTTGTTCAAGTGAATACAG 57.320 39.130 20.24 0.00 36.33 2.74
5581 6078 4.821805 CAGTTGTTCAAGTGAATACAGGGT 59.178 41.667 13.22 0.00 36.33 4.34
5582 6079 5.049405 CAGTTGTTCAAGTGAATACAGGGTC 60.049 44.000 13.22 0.00 36.33 4.46
5583 6080 4.698201 TGTTCAAGTGAATACAGGGTCA 57.302 40.909 0.00 0.00 36.33 4.02
5587 6109 7.227873 TGTTCAAGTGAATACAGGGTCATTTA 58.772 34.615 0.00 0.00 36.33 1.40
5656 6206 4.770795 AGGTTAATCATTCACCTCTTCCG 58.229 43.478 0.00 0.00 35.99 4.30
5681 6231 7.308169 CGTTATGGTGAATCTGTGAATATGCAT 60.308 37.037 3.79 3.79 0.00 3.96
5687 6237 8.019669 GGTGAATCTGTGAATATGCATAATGTC 58.980 37.037 11.13 9.18 0.00 3.06
5722 6272 5.374071 ACGGGCCTAGGTAAATCAAAATAG 58.626 41.667 11.31 0.00 0.00 1.73
5793 6374 8.579850 TTGACATTTATTCTACTTGCATTCCT 57.420 30.769 0.00 0.00 0.00 3.36
5794 6375 8.579850 TGACATTTATTCTACTTGCATTCCTT 57.420 30.769 0.00 0.00 0.00 3.36
6047 6687 3.820557 AGTTGCTGTGTATGGTTTCAGT 58.179 40.909 0.00 0.00 0.00 3.41
6119 6759 1.609208 ACAAGCCTTACAGCAACCAG 58.391 50.000 0.00 0.00 34.23 4.00
6182 6822 3.253432 CCAAGGCCTACAAAAGAACAGTC 59.747 47.826 5.16 0.00 0.00 3.51
6185 6825 2.479275 GGCCTACAAAAGAACAGTCGAC 59.521 50.000 7.70 7.70 0.00 4.20
6188 6828 4.560108 GCCTACAAAAGAACAGTCGACCTA 60.560 45.833 13.01 0.00 0.00 3.08
6191 6831 7.318141 CCTACAAAAGAACAGTCGACCTATTA 58.682 38.462 13.01 0.00 0.00 0.98
6194 6834 7.215085 ACAAAAGAACAGTCGACCTATTAACT 58.785 34.615 13.01 0.31 0.00 2.24
6212 6852 9.495572 CTATTAACTGAGAAGAAGGAACAAGTT 57.504 33.333 0.00 0.00 0.00 2.66
6359 6999 0.543174 AGGACGAAGAGGGCAAGACT 60.543 55.000 0.00 0.00 0.00 3.24
6377 7017 0.179000 CTACAGAGCCCGCCAAGAAT 59.821 55.000 0.00 0.00 0.00 2.40
6389 7029 1.377725 CAAGAATGCCGAGGTGCCT 60.378 57.895 0.00 0.00 0.00 4.75
6495 7135 2.605030 GCATGCTCTCATCCGATAGAC 58.395 52.381 11.37 0.00 39.76 2.59
6496 7136 2.029560 GCATGCTCTCATCCGATAGACA 60.030 50.000 11.37 0.00 39.76 3.41
6558 7199 0.319083 TCAGCGCCCTCGTCTAAAAA 59.681 50.000 2.29 0.00 38.14 1.94
6614 7255 1.026718 ATGCAGTAGGCTTTCCGCAC 61.027 55.000 0.00 0.00 45.15 5.34
6751 7396 7.545489 ACTATAAAGAAGATTTCGTCGACCTT 58.455 34.615 10.58 6.85 34.02 3.50
6772 7417 0.394565 AAGCAGCAGAGTTCGAACCT 59.605 50.000 24.22 17.39 0.00 3.50
6774 7419 1.618837 AGCAGCAGAGTTCGAACCTTA 59.381 47.619 24.22 0.00 0.00 2.69
6780 7425 3.062774 GCAGAGTTCGAACCTTATCAAGC 59.937 47.826 24.22 17.43 0.00 4.01
6781 7426 3.619038 CAGAGTTCGAACCTTATCAAGCC 59.381 47.826 24.22 0.00 0.00 4.35
6792 7437 2.004583 TATCAAGCCGAACGAGTTGG 57.995 50.000 0.00 0.00 0.00 3.77
6794 7439 0.599204 TCAAGCCGAACGAGTTGGAC 60.599 55.000 0.00 0.00 0.00 4.02
6795 7440 0.878523 CAAGCCGAACGAGTTGGACA 60.879 55.000 0.00 0.00 0.00 4.02
6797 7442 1.593209 GCCGAACGAGTTGGACACA 60.593 57.895 0.00 0.00 0.00 3.72
6798 7443 1.828331 GCCGAACGAGTTGGACACAC 61.828 60.000 0.00 0.00 0.00 3.82
6799 7444 1.545614 CCGAACGAGTTGGACACACG 61.546 60.000 0.00 0.00 44.31 4.49
6800 7445 1.563173 GAACGAGTTGGACACACGC 59.437 57.895 0.00 0.00 42.69 5.34
6801 7446 2.142418 GAACGAGTTGGACACACGCG 62.142 60.000 3.53 3.53 42.69 6.01
6803 7448 2.964925 GAGTTGGACACACGCGCA 60.965 61.111 5.73 0.00 0.00 6.09
6804 7449 3.223435 GAGTTGGACACACGCGCAC 62.223 63.158 5.73 0.00 0.00 5.34
6805 7450 3.568743 GTTGGACACACGCGCACA 61.569 61.111 5.73 0.00 0.00 4.57
6807 7452 4.821589 TGGACACACGCGCACACA 62.822 61.111 5.73 0.00 0.00 3.72
6808 7453 3.568743 GGACACACGCGCACACAA 61.569 61.111 5.73 0.00 0.00 3.33
6809 7454 2.401592 GACACACGCGCACACAAA 59.598 55.556 5.73 0.00 0.00 2.83
6810 7455 1.226156 GACACACGCGCACACAAAA 60.226 52.632 5.73 0.00 0.00 2.44
6811 7456 0.794981 GACACACGCGCACACAAAAA 60.795 50.000 5.73 0.00 0.00 1.94
6812 7457 1.068287 ACACACGCGCACACAAAAAC 61.068 50.000 5.73 0.00 0.00 2.43
6813 7458 1.515304 ACACGCGCACACAAAAACC 60.515 52.632 5.73 0.00 0.00 3.27
6817 7462 0.926846 CGCGCACACAAAAACCAATT 59.073 45.000 8.75 0.00 0.00 2.32
6820 7465 3.600460 CGCGCACACAAAAACCAATTTAC 60.600 43.478 8.75 0.00 0.00 2.01
6821 7466 3.307242 GCGCACACAAAAACCAATTTACA 59.693 39.130 0.30 0.00 0.00 2.41
6823 7468 5.503194 GCGCACACAAAAACCAATTTACATT 60.503 36.000 0.30 0.00 0.00 2.71
6824 7469 6.126079 CGCACACAAAAACCAATTTACATTC 58.874 36.000 0.00 0.00 0.00 2.67
6825 7470 6.426327 GCACACAAAAACCAATTTACATTCC 58.574 36.000 0.00 0.00 0.00 3.01
6826 7471 6.037610 GCACACAAAAACCAATTTACATTCCA 59.962 34.615 0.00 0.00 0.00 3.53
6827 7472 7.629130 CACACAAAAACCAATTTACATTCCAG 58.371 34.615 0.00 0.00 0.00 3.86
6828 7473 7.493971 CACACAAAAACCAATTTACATTCCAGA 59.506 33.333 0.00 0.00 0.00 3.86
6829 7474 8.043710 ACACAAAAACCAATTTACATTCCAGAA 58.956 29.630 0.00 0.00 0.00 3.02
6830 7475 8.550376 CACAAAAACCAATTTACATTCCAGAAG 58.450 33.333 0.00 0.00 0.00 2.85
6832 7477 6.994421 AAACCAATTTACATTCCAGAAGGT 57.006 33.333 3.00 3.00 38.90 3.50
6870 7660 3.660865 CGGAGGTACAAAGCACTTAACT 58.339 45.455 0.00 0.00 0.00 2.24
6871 7661 3.678548 CGGAGGTACAAAGCACTTAACTC 59.321 47.826 0.00 0.00 0.00 3.01
6914 7710 3.461085 TGGTATCTACTACTCCCTCCGTT 59.539 47.826 0.00 0.00 0.00 4.44
6915 7711 4.079558 TGGTATCTACTACTCCCTCCGTTT 60.080 45.833 0.00 0.00 0.00 3.60
6916 7712 4.518590 GGTATCTACTACTCCCTCCGTTTC 59.481 50.000 0.00 0.00 0.00 2.78
6917 7713 3.726557 TCTACTACTCCCTCCGTTTCA 57.273 47.619 0.00 0.00 0.00 2.69
6918 7714 4.246712 TCTACTACTCCCTCCGTTTCAT 57.753 45.455 0.00 0.00 0.00 2.57
6920 7716 5.950023 TCTACTACTCCCTCCGTTTCATAT 58.050 41.667 0.00 0.00 0.00 1.78
6929 7725 4.506654 CCCTCCGTTTCATATTACTTGTCG 59.493 45.833 0.00 0.00 0.00 4.35
6930 7726 4.025979 CCTCCGTTTCATATTACTTGTCGC 60.026 45.833 0.00 0.00 0.00 5.19
6931 7727 4.751060 TCCGTTTCATATTACTTGTCGCT 58.249 39.130 0.00 0.00 0.00 4.93
6932 7728 4.565166 TCCGTTTCATATTACTTGTCGCTG 59.435 41.667 0.00 0.00 0.00 5.18
6934 7730 5.234329 CCGTTTCATATTACTTGTCGCTGAT 59.766 40.000 0.00 0.00 0.00 2.90
6935 7731 6.238103 CCGTTTCATATTACTTGTCGCTGATT 60.238 38.462 0.00 0.00 0.00 2.57
6938 7734 9.638300 GTTTCATATTACTTGTCGCTGATTTAG 57.362 33.333 0.00 0.00 0.00 1.85
6939 7735 8.942338 TTCATATTACTTGTCGCTGATTTAGT 57.058 30.769 0.00 0.00 0.00 2.24
6946 7742 9.865321 TTACTTGTCGCTGATTTAGTATAAAGT 57.135 29.630 0.00 0.00 0.00 2.66
6948 7744 9.517609 ACTTGTCGCTGATTTAGTATAAAGTAG 57.482 33.333 0.00 0.00 0.00 2.57
6949 7745 7.925703 TGTCGCTGATTTAGTATAAAGTAGC 57.074 36.000 9.02 9.02 0.00 3.58
6950 7746 7.713750 TGTCGCTGATTTAGTATAAAGTAGCT 58.286 34.615 13.76 0.00 0.00 3.32
6951 7747 8.843262 TGTCGCTGATTTAGTATAAAGTAGCTA 58.157 33.333 13.76 0.00 0.00 3.32
6953 7749 9.894783 TCGCTGATTTAGTATAAAGTAGCTAAG 57.105 33.333 0.00 0.00 0.00 2.18
6954 7750 9.680315 CGCTGATTTAGTATAAAGTAGCTAAGT 57.320 33.333 0.00 0.00 0.00 2.24
6973 7769 8.192110 AGCTAAGTAACTTTGTACTAGATCAGC 58.808 37.037 0.00 0.00 33.05 4.26
6975 7771 6.754702 AGTAACTTTGTACTAGATCAGCGA 57.245 37.500 0.00 0.00 32.42 4.93
6976 7772 6.553524 AGTAACTTTGTACTAGATCAGCGAC 58.446 40.000 0.00 0.00 32.42 5.19
6977 7773 5.386958 AACTTTGTACTAGATCAGCGACA 57.613 39.130 0.00 0.00 0.00 4.35
6978 7774 5.386958 ACTTTGTACTAGATCAGCGACAA 57.613 39.130 0.00 2.98 33.66 3.18
6979 7775 5.403246 ACTTTGTACTAGATCAGCGACAAG 58.597 41.667 0.00 0.00 35.77 3.16
6980 7776 5.047943 ACTTTGTACTAGATCAGCGACAAGT 60.048 40.000 0.00 0.00 35.77 3.16
6981 7777 6.150641 ACTTTGTACTAGATCAGCGACAAGTA 59.849 38.462 0.00 0.00 35.77 2.24
6984 7780 7.797038 TGTACTAGATCAGCGACAAGTAATA 57.203 36.000 0.00 0.00 0.00 0.98
6986 7782 8.290325 TGTACTAGATCAGCGACAAGTAATATG 58.710 37.037 0.00 0.00 0.00 1.78
6987 7783 7.511959 ACTAGATCAGCGACAAGTAATATGA 57.488 36.000 0.00 0.00 0.00 2.15
6988 7784 7.941919 ACTAGATCAGCGACAAGTAATATGAA 58.058 34.615 0.00 0.00 0.00 2.57
6989 7785 8.414003 ACTAGATCAGCGACAAGTAATATGAAA 58.586 33.333 0.00 0.00 0.00 2.69
6990 7786 7.470289 AGATCAGCGACAAGTAATATGAAAC 57.530 36.000 0.00 0.00 0.00 2.78
6991 7787 5.696260 TCAGCGACAAGTAATATGAAACG 57.304 39.130 0.00 0.00 0.00 3.60
6993 7789 4.565166 CAGCGACAAGTAATATGAAACGGA 59.435 41.667 0.00 0.00 0.00 4.69
6994 7790 4.804139 AGCGACAAGTAATATGAAACGGAG 59.196 41.667 0.00 0.00 0.00 4.63
6995 7791 4.025979 GCGACAAGTAATATGAAACGGAGG 60.026 45.833 0.00 0.00 0.00 4.30
6996 7792 4.506654 CGACAAGTAATATGAAACGGAGGG 59.493 45.833 0.00 0.00 0.00 4.30
7040 7879 4.065088 ACGGTAGTCAGTTCGTACTACAA 58.935 43.478 13.03 0.00 46.45 2.41
7048 7887 6.432162 AGTCAGTTCGTACTACAATAGAACCA 59.568 38.462 0.00 0.00 41.28 3.67
7051 7890 7.972277 TCAGTTCGTACTACAATAGAACCAATC 59.028 37.037 0.00 0.00 41.28 2.67
7115 7954 0.249120 TAACCGTGGCATCCTGTCAG 59.751 55.000 0.00 0.00 29.65 3.51
7146 7985 2.420022 GCTGGACACCACATTATCACAC 59.580 50.000 0.00 0.00 0.00 3.82
7159 7999 5.105473 ACATTATCACACGTAGCCAAGTAGT 60.105 40.000 0.00 0.00 0.00 2.73
7160 8000 6.095860 ACATTATCACACGTAGCCAAGTAGTA 59.904 38.462 0.00 0.00 0.00 1.82
7161 8001 4.634184 ATCACACGTAGCCAAGTAGTAG 57.366 45.455 0.00 0.00 0.00 2.57
7174 8014 1.094785 GTAGTAGGGGTTGTACGCGA 58.905 55.000 15.93 0.00 31.02 5.87
7179 8019 0.683504 AGGGGTTGTACGCGATCTCT 60.684 55.000 15.93 0.00 31.02 3.10
7200 8040 6.262496 TCTCTAGAAAAAGAGTTGTCGAGTGA 59.738 38.462 0.00 0.00 43.02 3.41
7210 8050 0.950555 TGTCGAGTGAGTGCATTGCC 60.951 55.000 6.12 0.00 0.00 4.52
7264 8164 4.380444 GGAGGACGCTATCTGAATCTGATC 60.380 50.000 5.90 0.00 0.00 2.92
7358 8421 1.001293 GCTGGAAAGGCAAAAGGGAAG 59.999 52.381 0.00 0.00 0.00 3.46
7359 8422 2.597455 CTGGAAAGGCAAAAGGGAAGA 58.403 47.619 0.00 0.00 0.00 2.87
7487 8550 2.040412 GGCTTGGAAGAGGAGGAAAAGA 59.960 50.000 0.00 0.00 0.00 2.52
7515 8578 2.434359 GCCGTGTGAGTACCTGCC 60.434 66.667 0.00 0.00 0.00 4.85
7722 8792 2.348104 CCCGATCTGGTCACGTCCA 61.348 63.158 0.00 0.00 35.15 4.02
7738 8808 0.684535 TCCATGTCTTCACGAAGCCA 59.315 50.000 1.75 0.00 38.28 4.75
7743 8813 2.210116 TGTCTTCACGAAGCCACTTTC 58.790 47.619 1.75 0.00 38.28 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.550072 GCATAAGGGCAAAAGCTTCCA 59.450 47.619 0.00 0.00 0.00 3.53
1 2 1.550072 TGCATAAGGGCAAAAGCTTCC 59.450 47.619 0.00 0.00 41.65 3.46
2 3 2.610433 GTGCATAAGGGCAAAAGCTTC 58.390 47.619 0.00 0.00 46.93 3.86
3 4 1.276138 GGTGCATAAGGGCAAAAGCTT 59.724 47.619 0.00 0.00 46.93 3.74
4 5 0.897621 GGTGCATAAGGGCAAAAGCT 59.102 50.000 0.00 0.00 46.93 3.74
5 6 0.108186 GGGTGCATAAGGGCAAAAGC 60.108 55.000 0.00 0.00 46.93 3.51
6 7 1.478105 GAGGGTGCATAAGGGCAAAAG 59.522 52.381 0.00 0.00 46.93 2.27
7 8 1.555967 GAGGGTGCATAAGGGCAAAA 58.444 50.000 0.00 0.00 46.93 2.44
8 9 0.324275 GGAGGGTGCATAAGGGCAAA 60.324 55.000 0.00 0.00 46.93 3.68
10 11 1.288508 ATGGAGGGTGCATAAGGGCA 61.289 55.000 0.00 0.00 42.53 5.36
11 12 0.825010 CATGGAGGGTGCATAAGGGC 60.825 60.000 0.00 0.00 0.00 5.19
12 13 0.825010 GCATGGAGGGTGCATAAGGG 60.825 60.000 0.00 0.00 42.08 3.95
13 14 0.106569 TGCATGGAGGGTGCATAAGG 60.107 55.000 0.00 0.00 46.76 2.69
14 15 3.500331 TGCATGGAGGGTGCATAAG 57.500 52.632 0.00 0.00 46.76 1.73
19 20 2.036256 AAGGTGCATGGAGGGTGC 59.964 61.111 0.00 0.00 42.81 5.01
20 21 2.345760 GCAAGGTGCATGGAGGGTG 61.346 63.158 0.00 0.00 44.26 4.61
21 22 2.036256 GCAAGGTGCATGGAGGGT 59.964 61.111 0.00 0.00 44.26 4.34
38 39 1.815003 GCTTCTTCAGGGTGTGATTGG 59.185 52.381 0.00 0.00 34.17 3.16
164 166 4.204891 GTGCGTGCGTGCCGTATC 62.205 66.667 0.00 0.00 0.00 2.24
170 172 4.666532 GGAACTGTGCGTGCGTGC 62.667 66.667 0.00 0.00 0.00 5.34
171 173 4.012895 GGGAACTGTGCGTGCGTG 62.013 66.667 0.00 0.00 0.00 5.34
172 174 4.539083 TGGGAACTGTGCGTGCGT 62.539 61.111 0.00 0.00 0.00 5.24
173 175 4.012895 GTGGGAACTGTGCGTGCG 62.013 66.667 0.00 0.00 0.00 5.34
176 178 1.839747 TAGGGTGGGAACTGTGCGT 60.840 57.895 0.00 0.00 0.00 5.24
177 179 1.375523 GTAGGGTGGGAACTGTGCG 60.376 63.158 0.00 0.00 0.00 5.34
178 180 1.375523 CGTAGGGTGGGAACTGTGC 60.376 63.158 0.00 0.00 0.00 4.57
179 181 0.037605 GACGTAGGGTGGGAACTGTG 60.038 60.000 0.00 0.00 0.00 3.66
180 182 0.470456 TGACGTAGGGTGGGAACTGT 60.470 55.000 0.00 0.00 0.00 3.55
181 183 0.037605 GTGACGTAGGGTGGGAACTG 60.038 60.000 0.00 0.00 0.00 3.16
182 184 0.178941 AGTGACGTAGGGTGGGAACT 60.179 55.000 0.00 0.00 0.00 3.01
184 186 1.823169 GCAGTGACGTAGGGTGGGAA 61.823 60.000 0.00 0.00 0.00 3.97
188 190 1.148310 CAAAGCAGTGACGTAGGGTG 58.852 55.000 0.00 0.00 0.00 4.61
189 191 0.602905 GCAAAGCAGTGACGTAGGGT 60.603 55.000 0.00 0.00 0.00 4.34
190 192 0.320771 AGCAAAGCAGTGACGTAGGG 60.321 55.000 0.00 0.00 0.00 3.53
193 195 4.143200 CGAAAATAGCAAAGCAGTGACGTA 60.143 41.667 0.00 0.00 0.00 3.57
260 263 3.251972 GGCTGATGCTTAATTAGTCTGGC 59.748 47.826 0.00 0.00 39.59 4.85
261 264 4.712476 AGGCTGATGCTTAATTAGTCTGG 58.288 43.478 0.00 0.00 35.62 3.86
262 265 6.541641 AGAAAGGCTGATGCTTAATTAGTCTG 59.458 38.462 0.00 0.00 35.88 3.51
263 266 6.657875 AGAAAGGCTGATGCTTAATTAGTCT 58.342 36.000 0.00 0.00 38.42 3.24
264 267 6.934048 AGAAAGGCTGATGCTTAATTAGTC 57.066 37.500 0.00 0.00 39.59 2.59
370 377 7.307455 GGGCAATTCATCTAGAAAACGAGATAC 60.307 40.741 0.00 0.00 40.22 2.24
441 453 1.750682 GCCAGGAGTCCAACTGTTTGT 60.751 52.381 12.86 0.00 32.90 2.83
443 455 0.178990 GGCCAGGAGTCCAACTGTTT 60.179 55.000 12.86 0.00 32.90 2.83
455 467 1.070786 GAAACGTGTCAGGCCAGGA 59.929 57.895 5.01 0.00 0.00 3.86
482 494 2.898920 TAGGTGGGTACGAGAGGCGG 62.899 65.000 0.00 0.00 46.49 6.13
515 527 9.538508 TGTGATTGTGATTTATGAGTAGATCAG 57.461 33.333 0.00 0.00 42.53 2.90
519 531 9.889128 TGATTGTGATTGTGATTTATGAGTAGA 57.111 29.630 0.00 0.00 0.00 2.59
520 532 9.926751 GTGATTGTGATTGTGATTTATGAGTAG 57.073 33.333 0.00 0.00 0.00 2.57
522 534 8.339344 TGTGATTGTGATTGTGATTTATGAGT 57.661 30.769 0.00 0.00 0.00 3.41
523 535 9.285770 CTTGTGATTGTGATTGTGATTTATGAG 57.714 33.333 0.00 0.00 0.00 2.90
524 536 9.012161 TCTTGTGATTGTGATTGTGATTTATGA 57.988 29.630 0.00 0.00 0.00 2.15
525 537 9.285770 CTCTTGTGATTGTGATTGTGATTTATG 57.714 33.333 0.00 0.00 0.00 1.90
526 538 8.464404 CCTCTTGTGATTGTGATTGTGATTTAT 58.536 33.333 0.00 0.00 0.00 1.40
530 542 4.157289 GCCTCTTGTGATTGTGATTGTGAT 59.843 41.667 0.00 0.00 0.00 3.06
550 562 9.950496 CCAAGTATAGAACATAAATATCAGCCT 57.050 33.333 0.00 0.00 0.00 4.58
551 563 9.944376 TCCAAGTATAGAACATAAATATCAGCC 57.056 33.333 0.00 0.00 0.00 4.85
567 579 6.651643 ACTGCGAGATAGTACTCCAAGTATAG 59.348 42.308 0.00 0.00 32.65 1.31
590 609 0.176680 CGTATGCAAGGGAGCTGACT 59.823 55.000 0.00 0.00 34.99 3.41
627 646 8.395633 GCAGCCGAGATTAGTTTTATCTTTTTA 58.604 33.333 0.00 0.00 32.64 1.52
629 648 6.374333 TGCAGCCGAGATTAGTTTTATCTTTT 59.626 34.615 0.00 0.00 32.64 2.27
633 652 4.811557 ACTGCAGCCGAGATTAGTTTTATC 59.188 41.667 15.27 0.00 0.00 1.75
635 654 4.202245 ACTGCAGCCGAGATTAGTTTTA 57.798 40.909 15.27 0.00 0.00 1.52
663 682 9.349145 GCAGCCGAAATTAGTTTTATCTTTTTA 57.651 29.630 0.00 0.00 0.00 1.52
664 683 7.870445 TGCAGCCGAAATTAGTTTTATCTTTTT 59.130 29.630 0.00 0.00 0.00 1.94
665 684 7.375053 TGCAGCCGAAATTAGTTTTATCTTTT 58.625 30.769 0.00 0.00 0.00 2.27
666 685 6.919721 TGCAGCCGAAATTAGTTTTATCTTT 58.080 32.000 0.00 0.00 0.00 2.52
667 686 6.151144 ACTGCAGCCGAAATTAGTTTTATCTT 59.849 34.615 15.27 0.00 0.00 2.40
668 687 5.648092 ACTGCAGCCGAAATTAGTTTTATCT 59.352 36.000 15.27 0.00 0.00 1.98
669 688 5.880341 ACTGCAGCCGAAATTAGTTTTATC 58.120 37.500 15.27 0.00 0.00 1.75
670 689 5.897377 ACTGCAGCCGAAATTAGTTTTAT 57.103 34.783 15.27 0.00 0.00 1.40
671 690 6.596106 TGATACTGCAGCCGAAATTAGTTTTA 59.404 34.615 15.27 0.00 0.00 1.52
672 691 5.414454 TGATACTGCAGCCGAAATTAGTTTT 59.586 36.000 15.27 0.00 0.00 2.43
673 692 4.941263 TGATACTGCAGCCGAAATTAGTTT 59.059 37.500 15.27 0.00 0.00 2.66
674 693 4.513442 TGATACTGCAGCCGAAATTAGTT 58.487 39.130 15.27 0.00 0.00 2.24
675 694 4.137116 TGATACTGCAGCCGAAATTAGT 57.863 40.909 15.27 0.00 0.00 2.24
676 695 5.163764 TGTTTGATACTGCAGCCGAAATTAG 60.164 40.000 15.27 0.00 0.00 1.73
677 696 4.697828 TGTTTGATACTGCAGCCGAAATTA 59.302 37.500 15.27 0.00 0.00 1.40
678 697 3.505680 TGTTTGATACTGCAGCCGAAATT 59.494 39.130 15.27 0.00 0.00 1.82
679 698 3.081061 TGTTTGATACTGCAGCCGAAAT 58.919 40.909 15.27 0.00 0.00 2.17
680 699 2.483877 CTGTTTGATACTGCAGCCGAAA 59.516 45.455 15.27 5.18 0.00 3.46
681 700 2.076100 CTGTTTGATACTGCAGCCGAA 58.924 47.619 15.27 6.78 0.00 4.30
682 701 1.675714 CCTGTTTGATACTGCAGCCGA 60.676 52.381 15.27 0.00 0.00 5.54
683 702 0.729116 CCTGTTTGATACTGCAGCCG 59.271 55.000 15.27 0.00 0.00 5.52
684 703 0.453390 GCCTGTTTGATACTGCAGCC 59.547 55.000 15.27 3.87 0.00 4.85
685 704 1.131883 CTGCCTGTTTGATACTGCAGC 59.868 52.381 15.27 0.00 42.26 5.25
686 705 1.741706 CCTGCCTGTTTGATACTGCAG 59.258 52.381 13.48 13.48 45.16 4.41
687 706 1.073763 ACCTGCCTGTTTGATACTGCA 59.926 47.619 0.00 0.00 35.14 4.41
688 707 1.826385 ACCTGCCTGTTTGATACTGC 58.174 50.000 0.00 0.00 0.00 4.40
689 708 4.207891 ACTACCTGCCTGTTTGATACTG 57.792 45.455 0.00 0.00 0.00 2.74
690 709 4.286032 TGAACTACCTGCCTGTTTGATACT 59.714 41.667 0.00 0.00 0.00 2.12
691 710 4.575885 TGAACTACCTGCCTGTTTGATAC 58.424 43.478 0.00 0.00 0.00 2.24
692 711 4.901197 TGAACTACCTGCCTGTTTGATA 57.099 40.909 0.00 0.00 0.00 2.15
693 712 3.788227 TGAACTACCTGCCTGTTTGAT 57.212 42.857 0.00 0.00 0.00 2.57
694 713 3.072330 TGATGAACTACCTGCCTGTTTGA 59.928 43.478 0.00 0.00 0.00 2.69
695 714 3.189287 GTGATGAACTACCTGCCTGTTTG 59.811 47.826 0.00 0.00 0.00 2.93
696 715 3.073062 AGTGATGAACTACCTGCCTGTTT 59.927 43.478 0.00 0.00 37.36 2.83
701 720 1.471676 CCGAGTGATGAACTACCTGCC 60.472 57.143 0.00 0.00 40.07 4.85
703 722 3.775202 CTTCCGAGTGATGAACTACCTG 58.225 50.000 0.00 0.00 40.07 4.00
707 726 3.953712 TTGCTTCCGAGTGATGAACTA 57.046 42.857 0.00 0.00 40.07 2.24
718 737 1.485294 TAGGGGCTGTTTGCTTCCGA 61.485 55.000 0.00 0.00 42.39 4.55
724 743 1.544246 ACGAAAATAGGGGCTGTTTGC 59.456 47.619 0.00 0.00 41.94 3.68
731 750 1.092348 GTGTGGACGAAAATAGGGGC 58.908 55.000 0.00 0.00 0.00 5.80
733 752 1.280998 AGGGTGTGGACGAAAATAGGG 59.719 52.381 0.00 0.00 0.00 3.53
734 753 2.027561 TCAGGGTGTGGACGAAAATAGG 60.028 50.000 0.00 0.00 0.00 2.57
735 754 3.328382 TCAGGGTGTGGACGAAAATAG 57.672 47.619 0.00 0.00 0.00 1.73
736 755 3.773418 TTCAGGGTGTGGACGAAAATA 57.227 42.857 0.00 0.00 0.00 1.40
737 756 2.649531 TTCAGGGTGTGGACGAAAAT 57.350 45.000 0.00 0.00 0.00 1.82
750 791 0.533755 GGCGTGGATCAGATTCAGGG 60.534 60.000 12.48 0.20 0.00 4.45
1019 1076 2.294078 GGAGGTGGAGGTGGAGGTG 61.294 68.421 0.00 0.00 0.00 4.00
1020 1077 2.122954 GGAGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
1021 1078 2.122729 TGGAGGTGGAGGTGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
1022 1079 2.294078 GGTGGAGGTGGAGGTGGAG 61.294 68.421 0.00 0.00 0.00 3.86
1023 1080 2.203938 GGTGGAGGTGGAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
1024 1081 2.203998 AGGTGGAGGTGGAGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
1025 1082 2.294078 GGAGGTGGAGGTGGAGGTG 61.294 68.421 0.00 0.00 0.00 4.00
1026 1083 2.122954 GGAGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
1027 1084 2.122729 TGGAGGTGGAGGTGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
1028 1085 2.294078 GGTGGAGGTGGAGGTGGAG 61.294 68.421 0.00 0.00 0.00 3.86
1029 1086 2.203938 GGTGGAGGTGGAGGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
1030 1087 2.203998 AGGTGGAGGTGGAGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
1031 1088 2.294078 GGAGGTGGAGGTGGAGGTG 61.294 68.421 0.00 0.00 0.00 4.00
1032 1089 2.122954 GGAGGTGGAGGTGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
1070 1127 1.440938 TTCTTGTTCCGGTTGCGTGG 61.441 55.000 0.00 0.00 0.00 4.94
1098 1155 0.953960 GTTCCGCCGATGTGTCCTTT 60.954 55.000 0.00 0.00 0.00 3.11
1099 1156 1.375523 GTTCCGCCGATGTGTCCTT 60.376 57.895 0.00 0.00 0.00 3.36
1187 1244 4.925861 GGAGGCGAGGCTCATGGC 62.926 72.222 24.61 11.43 40.90 4.40
1261 1318 4.838486 GAGAGAGACGGCGTGCGG 62.838 72.222 21.19 0.00 0.00 5.69
1263 1320 2.101380 GAGAGAGAGACGGCGTGC 59.899 66.667 21.19 9.66 0.00 5.34
1265 1322 1.450669 GGAGAGAGAGAGACGGCGT 60.451 63.158 14.65 14.65 0.00 5.68
1267 1324 2.830285 GCGGAGAGAGAGAGACGGC 61.830 68.421 0.00 0.00 0.00 5.68
1270 1327 0.951558 GGATGCGGAGAGAGAGAGAC 59.048 60.000 0.00 0.00 0.00 3.36
1271 1328 0.179004 GGGATGCGGAGAGAGAGAGA 60.179 60.000 0.00 0.00 0.00 3.10
1311 1374 2.934083 GGTCAGACCTTTGTGAGCC 58.066 57.895 12.94 0.00 37.51 4.70
1338 1401 1.232119 ACCCTAACGAACGGCAAAAG 58.768 50.000 0.00 0.00 0.00 2.27
1340 1403 1.603326 GAAACCCTAACGAACGGCAAA 59.397 47.619 0.00 0.00 0.00 3.68
1621 1690 2.287547 TGAAAGCACAAAAGGATGCGTC 60.288 45.455 0.00 0.00 46.74 5.19
1623 1692 2.030893 TCTGAAAGCACAAAAGGATGCG 60.031 45.455 0.00 0.00 46.74 4.73
1740 1809 6.137794 ACTTCTCTACATGAACAGGATACG 57.862 41.667 0.00 0.00 46.39 3.06
1746 1815 5.117745 CGACACAACTTCTCTACATGAACAG 59.882 44.000 0.00 0.00 0.00 3.16
1752 1821 5.047306 TGGATTCGACACAACTTCTCTACAT 60.047 40.000 0.00 0.00 0.00 2.29
1868 1955 0.247185 CATCAAAAACTGCCCGGCAT 59.753 50.000 13.86 0.00 38.13 4.40
1873 1960 4.690280 CCATTGTTACATCAAAAACTGCCC 59.310 41.667 0.00 0.00 0.00 5.36
1883 1971 8.723365 AGGGAGTATTATTCCATTGTTACATCA 58.277 33.333 7.46 0.00 36.40 3.07
1914 2002 8.460428 ACACGTTTTTAAGACAAGTAATTTGGA 58.540 29.630 0.00 0.00 41.25 3.53
1962 2081 7.532546 CGTCGCAAATTACTTGTCTTCAATTTA 59.467 33.333 0.00 0.00 37.36 1.40
1967 2086 3.185594 CCGTCGCAAATTACTTGTCTTCA 59.814 43.478 0.00 0.00 37.36 3.02
1968 2087 3.430895 TCCGTCGCAAATTACTTGTCTTC 59.569 43.478 0.00 0.00 37.36 2.87
1984 2103 6.183360 CCAGTTATATCCTATTACCTCCGTCG 60.183 46.154 0.00 0.00 0.00 5.12
2012 2131 4.380867 GGACATGGTTGTGACAAATCCATC 60.381 45.833 15.20 8.22 36.86 3.51
2020 2139 1.610363 CCATCGGACATGGTTGTGACA 60.610 52.381 0.00 0.00 35.79 3.58
2064 2183 1.340889 TCACATTTGAAGTTGGCAGCC 59.659 47.619 3.66 3.66 0.00 4.85
2073 2192 5.716094 TGGAGCATTTCATCACATTTGAAG 58.284 37.500 0.00 0.00 34.76 3.02
2079 2198 3.362706 AGCTTGGAGCATTTCATCACAT 58.637 40.909 2.47 0.00 45.56 3.21
2109 2228 5.237815 TCGCAATTTCATCACACTAGAAGT 58.762 37.500 0.00 0.00 0.00 3.01
2110 2229 5.784750 TCGCAATTTCATCACACTAGAAG 57.215 39.130 0.00 0.00 0.00 2.85
2112 2231 6.108687 AGAATCGCAATTTCATCACACTAGA 58.891 36.000 0.00 0.00 0.00 2.43
2113 2232 6.355397 AGAATCGCAATTTCATCACACTAG 57.645 37.500 0.00 0.00 0.00 2.57
2114 2233 6.741992 AAGAATCGCAATTTCATCACACTA 57.258 33.333 0.00 0.00 0.00 2.74
2131 2250 6.128336 CGGATTCCTCTGCATATCAAAGAATC 60.128 42.308 0.30 0.00 35.70 2.52
2137 2256 4.897509 ATCGGATTCCTCTGCATATCAA 57.102 40.909 0.30 0.00 0.00 2.57
2429 2551 1.191535 CCTGGGGTTCTCGACACATA 58.808 55.000 0.00 0.00 31.36 2.29
2498 2620 7.585286 CAAATTTAATTGGATGTGACAGGTG 57.415 36.000 0.00 0.00 0.00 4.00
2550 2674 3.748048 GTCTGCTTCTGCTTGTCACAATA 59.252 43.478 0.00 0.00 40.48 1.90
2652 2802 7.042335 GTGTGCTATCTGTTTTCTGGTATAGT 58.958 38.462 0.00 0.00 0.00 2.12
2656 2806 5.221641 ACAGTGTGCTATCTGTTTTCTGGTA 60.222 40.000 0.00 0.00 41.33 3.25
2663 2813 4.898320 TGATCACAGTGTGCTATCTGTTT 58.102 39.130 18.80 0.00 42.05 2.83
2697 2847 0.894141 TTGCAAACATGCCGCCTTAT 59.106 45.000 0.00 0.00 0.00 1.73
2757 2909 9.066892 TCAATGGGCTATAGAATTAAACATCAC 57.933 33.333 3.21 0.00 0.00 3.06
2866 3167 2.423185 TGGCATTTGCATTCGAAGGTAG 59.577 45.455 11.90 0.00 44.36 3.18
2957 3382 5.914635 ACAAGCACACAATCTTTTCATAACG 59.085 36.000 0.00 0.00 0.00 3.18
2971 3396 3.882288 TCTGCAGAAATTACAAGCACACA 59.118 39.130 15.67 0.00 0.00 3.72
2972 3397 4.488126 TCTGCAGAAATTACAAGCACAC 57.512 40.909 15.67 0.00 0.00 3.82
3145 3570 0.617413 CCTGTCTGCCTGGAACATCT 59.383 55.000 0.00 0.00 38.20 2.90
3205 3630 6.345882 CCTCTAACTTTTCTTCAAACGACTCG 60.346 42.308 0.00 0.00 0.00 4.18
3481 3906 8.997323 AGAATGATACAGAACAAGAAAGAACTG 58.003 33.333 0.00 0.00 0.00 3.16
3508 3933 9.379791 CTCTTTAATGGAGTATAAAAGGAACGT 57.620 33.333 0.00 0.00 0.00 3.99
3509 3934 8.827677 CCTCTTTAATGGAGTATAAAAGGAACG 58.172 37.037 5.60 0.00 0.00 3.95
3579 4008 3.512219 TCTAAACAATGGGGACGGTTT 57.488 42.857 0.00 0.00 36.26 3.27
3583 4012 5.646360 ACTGTAAATCTAAACAATGGGGACG 59.354 40.000 0.00 0.00 0.00 4.79
3637 4066 2.834549 GGAGTTGTCAGGGAGATTCAGA 59.165 50.000 0.00 0.00 0.00 3.27
3661 4090 1.064017 ACACCTGCTCCAACCAAAGAA 60.064 47.619 0.00 0.00 0.00 2.52
3797 4226 0.539051 CAGGAGGACCTACAAGCAGG 59.461 60.000 6.47 0.00 45.94 4.85
3908 4337 0.611200 TGGATGGTCCAACACCTACG 59.389 55.000 0.00 0.00 45.00 3.51
4471 4900 3.213206 TGTCCTTCTGCTCACAAATGT 57.787 42.857 0.00 0.00 0.00 2.71
4486 4915 1.956477 GGAACATGCAAGTGTTGTCCT 59.044 47.619 10.33 0.00 42.08 3.85
4560 4989 9.642327 TGCAACAGTAATACTATTACGAGAAAA 57.358 29.630 11.64 0.00 0.00 2.29
4590 5019 5.376625 TCAACTTTCTTAGGTTGCATGTCT 58.623 37.500 0.00 0.00 41.53 3.41
4636 5065 4.916983 TGTGTGAATTTTCTCCACAAGG 57.083 40.909 11.40 0.00 41.71 3.61
4755 5219 0.682852 TGACCCACACTAGAAACCGG 59.317 55.000 0.00 0.00 0.00 5.28
4766 5230 0.950836 CACGCAAAAGATGACCCACA 59.049 50.000 0.00 0.00 0.00 4.17
4768 5232 0.179004 ACCACGCAAAAGATGACCCA 60.179 50.000 0.00 0.00 0.00 4.51
4769 5233 0.958822 AACCACGCAAAAGATGACCC 59.041 50.000 0.00 0.00 0.00 4.46
4889 5382 2.724977 TCCAGAGCACTTAGTTGACG 57.275 50.000 0.00 0.00 0.00 4.35
4948 5443 7.416777 CCCTCTCTTGCCCTTGTTTATTTAATC 60.417 40.741 0.00 0.00 0.00 1.75
4995 5490 2.827190 ATGAGGCATGCCAGTGCG 60.827 61.111 37.18 0.00 45.97 5.34
5229 5726 3.671008 TCATGGTAAGCAACAGTACGT 57.329 42.857 0.00 0.00 0.00 3.57
5364 5861 6.703165 GCTGTTCCTTTGTCATCAAAAGATTT 59.297 34.615 0.00 0.00 42.02 2.17
5385 5882 4.520179 TGCATGTCATATCAAAGAGCTGT 58.480 39.130 0.00 0.00 0.00 4.40
5547 6044 5.911280 CACTTGAACAACTGCTTTAGTGATG 59.089 40.000 0.00 0.00 40.26 3.07
5561 6058 5.042463 TGACCCTGTATTCACTTGAACAA 57.958 39.130 0.00 0.00 36.80 2.83
5576 6073 2.357009 GCAGCACTCATAAATGACCCTG 59.643 50.000 0.00 0.00 32.50 4.45
5577 6074 2.025981 TGCAGCACTCATAAATGACCCT 60.026 45.455 0.00 0.00 32.50 4.34
5578 6075 2.368439 TGCAGCACTCATAAATGACCC 58.632 47.619 0.00 0.00 32.50 4.46
5581 6078 4.573607 GTCAGATGCAGCACTCATAAATGA 59.426 41.667 4.07 0.00 35.16 2.57
5582 6079 4.334481 TGTCAGATGCAGCACTCATAAATG 59.666 41.667 4.07 0.00 0.00 2.32
5583 6080 4.520179 TGTCAGATGCAGCACTCATAAAT 58.480 39.130 4.07 0.00 0.00 1.40
5587 6109 2.027469 TCTTGTCAGATGCAGCACTCAT 60.027 45.455 4.07 0.00 0.00 2.90
5656 6206 7.263100 TGCATATTCACAGATTCACCATAAC 57.737 36.000 0.00 0.00 0.00 1.89
5681 6231 3.504134 CCCGTCAAATTGTGGTGACATTA 59.496 43.478 8.35 0.00 46.14 1.90
5687 6237 1.178534 AGGCCCGTCAAATTGTGGTG 61.179 55.000 0.00 0.96 0.00 4.17
5722 6272 7.168637 TGTCGAGAAACTTGTGATAACAGTAAC 59.831 37.037 0.00 0.00 0.00 2.50
5736 6317 4.307432 CAGTGGTGTATGTCGAGAAACTT 58.693 43.478 0.00 0.00 0.00 2.66
5895 6535 4.637977 TGCACTTTCATCGGCAATATTGTA 59.362 37.500 16.61 3.84 32.54 2.41
5949 6589 6.003950 AGATTCTTCCGATCAAAACCTGAAA 58.996 36.000 0.00 0.00 37.67 2.69
5963 6603 1.914634 CACCAGTCGAGATTCTTCCG 58.085 55.000 0.00 0.00 0.00 4.30
6047 6687 6.099845 GGAAGGATAGAAGACCAACCTTATCA 59.900 42.308 0.00 0.00 37.77 2.15
6119 6759 2.094494 AGTATCGATGATGGATGCGGTC 60.094 50.000 8.54 0.00 32.60 4.79
6182 6822 6.452494 TCCTTCTTCTCAGTTAATAGGTCG 57.548 41.667 0.00 0.00 0.00 4.79
6185 6825 8.097662 ACTTGTTCCTTCTTCTCAGTTAATAGG 58.902 37.037 0.00 0.00 0.00 2.57
6188 6828 7.255277 GCAACTTGTTCCTTCTTCTCAGTTAAT 60.255 37.037 0.00 0.00 0.00 1.40
6191 6831 4.336713 GCAACTTGTTCCTTCTTCTCAGTT 59.663 41.667 0.00 0.00 0.00 3.16
6194 6834 4.130118 GAGCAACTTGTTCCTTCTTCTCA 58.870 43.478 0.00 0.00 0.00 3.27
6212 6852 1.153765 CAACTCCGCGATGAGAGCA 60.154 57.895 17.62 0.00 36.22 4.26
6359 6999 0.107703 CATTCTTGGCGGGCTCTGTA 60.108 55.000 2.38 0.00 0.00 2.74
6377 7017 3.002583 TCATCAGGCACCTCGGCA 61.003 61.111 0.00 0.00 44.47 5.69
6410 7050 1.446099 GACGACATCAGGAAGCGCA 60.446 57.895 11.47 0.00 0.00 6.09
6495 7135 1.660104 GCTGCAACAACAAAACCAGTG 59.340 47.619 0.00 0.00 0.00 3.66
6496 7136 1.274728 TGCTGCAACAACAAAACCAGT 59.725 42.857 0.00 0.00 0.00 4.00
6558 7199 5.425196 AAATAAAACTGGCATGGCTGATT 57.575 34.783 28.93 21.45 0.00 2.57
6620 7261 1.145738 ACTGAAGAACAACAGGGCCAT 59.854 47.619 6.18 0.00 38.30 4.40
6751 7396 1.502231 GTTCGAACTCTGCTGCTTGA 58.498 50.000 20.97 0.00 0.00 3.02
6772 7417 2.028839 TCCAACTCGTTCGGCTTGATAA 60.029 45.455 0.00 0.00 0.00 1.75
6774 7419 0.320374 TCCAACTCGTTCGGCTTGAT 59.680 50.000 0.00 0.00 0.00 2.57
6780 7425 1.545614 CGTGTGTCCAACTCGTTCGG 61.546 60.000 0.00 0.00 40.13 4.30
6781 7426 1.844003 CGTGTGTCCAACTCGTTCG 59.156 57.895 0.00 0.00 40.13 3.95
6792 7437 0.794981 TTTTTGTGTGCGCGTGTGTC 60.795 50.000 8.43 0.00 0.00 3.67
6794 7439 1.623295 GTTTTTGTGTGCGCGTGTG 59.377 52.632 8.43 0.00 0.00 3.82
6795 7440 1.515304 GGTTTTTGTGTGCGCGTGT 60.515 52.632 8.43 0.00 0.00 4.49
6797 7442 0.179124 ATTGGTTTTTGTGTGCGCGT 60.179 45.000 8.43 0.00 0.00 6.01
6798 7443 0.926846 AATTGGTTTTTGTGTGCGCG 59.073 45.000 0.00 0.00 0.00 6.86
6799 7444 3.307242 TGTAAATTGGTTTTTGTGTGCGC 59.693 39.130 0.00 0.00 0.00 6.09
6800 7445 5.649602 ATGTAAATTGGTTTTTGTGTGCG 57.350 34.783 0.00 0.00 0.00 5.34
6801 7446 6.037610 TGGAATGTAAATTGGTTTTTGTGTGC 59.962 34.615 0.00 0.00 0.00 4.57
6803 7448 7.560368 TCTGGAATGTAAATTGGTTTTTGTGT 58.440 30.769 0.00 0.00 0.00 3.72
6804 7449 8.430801 TTCTGGAATGTAAATTGGTTTTTGTG 57.569 30.769 0.00 0.00 0.00 3.33
6805 7450 7.714813 CCTTCTGGAATGTAAATTGGTTTTTGT 59.285 33.333 0.00 0.00 34.57 2.83
6807 7452 7.801104 ACCTTCTGGAATGTAAATTGGTTTTT 58.199 30.769 0.00 0.00 37.04 1.94
6808 7453 7.373617 ACCTTCTGGAATGTAAATTGGTTTT 57.626 32.000 0.00 0.00 37.04 2.43
6809 7454 6.994421 ACCTTCTGGAATGTAAATTGGTTT 57.006 33.333 0.00 0.00 37.04 3.27
6810 7455 6.994421 AACCTTCTGGAATGTAAATTGGTT 57.006 33.333 0.00 0.00 37.04 3.67
6811 7456 6.994421 AAACCTTCTGGAATGTAAATTGGT 57.006 33.333 0.00 0.00 37.04 3.67
6812 7457 8.585018 AGTAAAACCTTCTGGAATGTAAATTGG 58.415 33.333 0.00 0.00 37.04 3.16
6813 7458 9.981114 AAGTAAAACCTTCTGGAATGTAAATTG 57.019 29.630 0.00 0.00 37.04 2.32
6820 7465 9.231297 TGAAGATAAGTAAAACCTTCTGGAATG 57.769 33.333 0.00 0.00 35.53 2.67
6821 7466 9.454859 CTGAAGATAAGTAAAACCTTCTGGAAT 57.545 33.333 0.00 0.00 35.53 3.01
6823 7468 6.879458 GCTGAAGATAAGTAAAACCTTCTGGA 59.121 38.462 0.00 0.00 35.53 3.86
6824 7469 6.094186 GGCTGAAGATAAGTAAAACCTTCTGG 59.906 42.308 0.00 0.00 35.53 3.86
6825 7470 6.183360 CGGCTGAAGATAAGTAAAACCTTCTG 60.183 42.308 0.00 0.00 35.53 3.02
6826 7471 5.875359 CGGCTGAAGATAAGTAAAACCTTCT 59.125 40.000 0.00 0.00 35.53 2.85
6827 7472 5.064834 CCGGCTGAAGATAAGTAAAACCTTC 59.935 44.000 0.00 0.00 35.18 3.46
6828 7473 4.941873 CCGGCTGAAGATAAGTAAAACCTT 59.058 41.667 0.00 0.00 0.00 3.50
6829 7474 4.224370 TCCGGCTGAAGATAAGTAAAACCT 59.776 41.667 0.00 0.00 0.00 3.50
6830 7475 4.510571 TCCGGCTGAAGATAAGTAAAACC 58.489 43.478 0.00 0.00 0.00 3.27
6832 7477 4.224370 ACCTCCGGCTGAAGATAAGTAAAA 59.776 41.667 0.00 0.00 0.00 1.52
6865 7655 8.908786 ACACATCATCTCAAGAAAAGAGTTAA 57.091 30.769 0.00 0.00 34.73 2.01
6868 7658 7.255381 CCAAACACATCATCTCAAGAAAAGAGT 60.255 37.037 0.00 0.00 34.73 3.24
6869 7659 7.082602 CCAAACACATCATCTCAAGAAAAGAG 58.917 38.462 0.00 0.00 34.42 2.85
6870 7660 6.547141 ACCAAACACATCATCTCAAGAAAAGA 59.453 34.615 0.00 0.00 0.00 2.52
6871 7661 6.742109 ACCAAACACATCATCTCAAGAAAAG 58.258 36.000 0.00 0.00 0.00 2.27
6914 7710 8.942338 ACTAAATCAGCGACAAGTAATATGAA 57.058 30.769 0.00 0.00 0.00 2.57
6920 7716 9.865321 ACTTTATACTAAATCAGCGACAAGTAA 57.135 29.630 0.00 0.00 0.00 2.24
6948 7744 7.166142 CGCTGATCTAGTACAAAGTTACTTAGC 59.834 40.741 0.00 0.00 0.00 3.09
6949 7745 8.396390 TCGCTGATCTAGTACAAAGTTACTTAG 58.604 37.037 0.00 0.00 0.00 2.18
6950 7746 8.180267 GTCGCTGATCTAGTACAAAGTTACTTA 58.820 37.037 0.00 0.00 0.00 2.24
6951 7747 7.028361 GTCGCTGATCTAGTACAAAGTTACTT 58.972 38.462 0.00 0.00 0.00 2.24
6953 7749 6.320171 TGTCGCTGATCTAGTACAAAGTTAC 58.680 40.000 0.00 0.00 0.00 2.50
6954 7750 6.505044 TGTCGCTGATCTAGTACAAAGTTA 57.495 37.500 0.00 0.00 0.00 2.24
6955 7751 5.386958 TGTCGCTGATCTAGTACAAAGTT 57.613 39.130 0.00 0.00 0.00 2.66
6957 7753 5.403246 ACTTGTCGCTGATCTAGTACAAAG 58.597 41.667 0.00 0.00 35.46 2.77
6958 7754 5.386958 ACTTGTCGCTGATCTAGTACAAA 57.613 39.130 0.00 0.00 35.46 2.83
6960 7756 6.694877 ATTACTTGTCGCTGATCTAGTACA 57.305 37.500 0.00 0.00 0.00 2.90
6961 7757 8.504815 TCATATTACTTGTCGCTGATCTAGTAC 58.495 37.037 0.00 0.00 0.00 2.73
6962 7758 8.617290 TCATATTACTTGTCGCTGATCTAGTA 57.383 34.615 0.00 0.00 0.00 1.82
6963 7759 7.511959 TCATATTACTTGTCGCTGATCTAGT 57.488 36.000 0.00 0.00 0.00 2.57
6964 7760 8.695284 GTTTCATATTACTTGTCGCTGATCTAG 58.305 37.037 0.00 0.00 0.00 2.43
6965 7761 7.378728 CGTTTCATATTACTTGTCGCTGATCTA 59.621 37.037 0.00 0.00 0.00 1.98
6967 7763 6.347881 CGTTTCATATTACTTGTCGCTGATC 58.652 40.000 0.00 0.00 0.00 2.92
6968 7764 5.234329 CCGTTTCATATTACTTGTCGCTGAT 59.766 40.000 0.00 0.00 0.00 2.90
6969 7765 4.565166 CCGTTTCATATTACTTGTCGCTGA 59.435 41.667 0.00 0.00 0.00 4.26
6970 7766 4.565166 TCCGTTTCATATTACTTGTCGCTG 59.435 41.667 0.00 0.00 0.00 5.18
6971 7767 4.751060 TCCGTTTCATATTACTTGTCGCT 58.249 39.130 0.00 0.00 0.00 4.93
6972 7768 4.025979 CCTCCGTTTCATATTACTTGTCGC 60.026 45.833 0.00 0.00 0.00 5.19
6973 7769 4.506654 CCCTCCGTTTCATATTACTTGTCG 59.493 45.833 0.00 0.00 0.00 4.35
6975 7771 5.189145 ACTCCCTCCGTTTCATATTACTTGT 59.811 40.000 0.00 0.00 0.00 3.16
6976 7772 5.671493 ACTCCCTCCGTTTCATATTACTTG 58.329 41.667 0.00 0.00 0.00 3.16
6977 7773 5.952347 ACTCCCTCCGTTTCATATTACTT 57.048 39.130 0.00 0.00 0.00 2.24
6978 7774 5.010820 GCTACTCCCTCCGTTTCATATTACT 59.989 44.000 0.00 0.00 0.00 2.24
6979 7775 5.010820 AGCTACTCCCTCCGTTTCATATTAC 59.989 44.000 0.00 0.00 0.00 1.89
6980 7776 5.010719 CAGCTACTCCCTCCGTTTCATATTA 59.989 44.000 0.00 0.00 0.00 0.98
6981 7777 3.967987 AGCTACTCCCTCCGTTTCATATT 59.032 43.478 0.00 0.00 0.00 1.28
6984 7780 1.482593 CAGCTACTCCCTCCGTTTCAT 59.517 52.381 0.00 0.00 0.00 2.57
6986 7782 1.135333 CTCAGCTACTCCCTCCGTTTC 59.865 57.143 0.00 0.00 0.00 2.78
6987 7783 1.187087 CTCAGCTACTCCCTCCGTTT 58.813 55.000 0.00 0.00 0.00 3.60
6988 7784 0.039911 ACTCAGCTACTCCCTCCGTT 59.960 55.000 0.00 0.00 0.00 4.44
6989 7785 0.917533 TACTCAGCTACTCCCTCCGT 59.082 55.000 0.00 0.00 0.00 4.69
6990 7786 1.134037 AGTACTCAGCTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
6991 7787 2.740506 AGTACTCAGCTACTCCCTCC 57.259 55.000 0.00 0.00 0.00 4.30
6993 7789 3.100671 CCAAAGTACTCAGCTACTCCCT 58.899 50.000 0.00 0.00 0.00 4.20
6994 7790 2.832733 ACCAAAGTACTCAGCTACTCCC 59.167 50.000 0.00 0.00 0.00 4.30
6995 7791 3.427773 CGACCAAAGTACTCAGCTACTCC 60.428 52.174 0.00 0.00 0.00 3.85
6996 7792 3.439476 TCGACCAAAGTACTCAGCTACTC 59.561 47.826 0.00 0.00 0.00 2.59
7029 7868 7.833786 ACAGATTGGTTCTATTGTAGTACGAA 58.166 34.615 0.00 0.00 31.77 3.85
7040 7879 5.581085 GCGTTGAACTACAGATTGGTTCTAT 59.419 40.000 0.00 0.00 39.73 1.98
7048 7887 1.726791 CGCTGCGTTGAACTACAGATT 59.273 47.619 14.93 0.00 31.67 2.40
7051 7890 1.693467 TACGCTGCGTTGAACTACAG 58.307 50.000 33.52 9.90 41.54 2.74
7115 7954 1.071699 TGGTGTCCAGCAAAGGTAGAC 59.928 52.381 0.00 0.00 35.69 2.59
7146 7985 1.772836 ACCCCTACTACTTGGCTACG 58.227 55.000 0.00 0.00 0.00 3.51
7159 7999 1.027357 GAGATCGCGTACAACCCCTA 58.973 55.000 5.77 0.00 0.00 3.53
7160 8000 0.683504 AGAGATCGCGTACAACCCCT 60.684 55.000 5.77 0.00 0.00 4.79
7161 8001 1.001597 CTAGAGATCGCGTACAACCCC 60.002 57.143 5.77 0.00 0.00 4.95
7174 8014 7.040340 TCACTCGACAACTCTTTTTCTAGAGAT 60.040 37.037 7.59 0.00 43.54 2.75
7179 8019 5.977725 CACTCACTCGACAACTCTTTTTCTA 59.022 40.000 0.00 0.00 0.00 2.10
7200 8040 0.893270 TTTGGTAGCGGCAATGCACT 60.893 50.000 7.79 6.39 37.31 4.40
7210 8050 2.068837 TAGGTCGTTGTTTGGTAGCG 57.931 50.000 0.00 0.00 0.00 4.26
7358 8421 2.630317 CGCGCCATGCATCTTCTC 59.370 61.111 0.00 0.00 46.97 2.87
7359 8422 2.898840 CCGCGCCATGCATCTTCT 60.899 61.111 0.00 0.00 46.97 2.85
7515 8578 1.900585 CTCCGTGTGCGTGATGGTTG 61.901 60.000 0.00 0.00 36.15 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.