Multiple sequence alignment - TraesCS1D01G282800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G282800 chr1D 100.000 3377 0 0 791 4167 381004599 381007975 0.000000e+00 6237.0
1 TraesCS1D01G282800 chr1D 79.121 1456 221 54 991 2419 456280637 456279238 0.000000e+00 928.0
2 TraesCS1D01G282800 chr1D 100.000 391 0 0 1 391 381003809 381004199 0.000000e+00 723.0
3 TraesCS1D01G282800 chr1D 94.881 293 10 3 1 289 361148994 361149285 1.770000e-123 453.0
4 TraesCS1D01G282800 chr1D 83.230 483 62 11 3495 3960 456278070 456277590 3.850000e-115 425.0
5 TraesCS1D01G282800 chr1D 92.734 289 14 1 1 289 463521982 463522263 1.080000e-110 411.0
6 TraesCS1D01G282800 chr1A 92.348 1921 93 16 973 2871 481627866 481629754 0.000000e+00 2684.0
7 TraesCS1D01G282800 chr1A 97.099 724 21 0 3444 4167 481630309 481631032 0.000000e+00 1221.0
8 TraesCS1D01G282800 chr1A 95.896 536 14 5 2912 3446 481629748 481630276 0.000000e+00 861.0
9 TraesCS1D01G282800 chr1A 94.792 288 15 0 1 288 70780307 70780020 2.280000e-122 449.0
10 TraesCS1D01G282800 chr1A 93.750 288 18 0 1 288 544802686 544802399 2.300000e-117 433.0
11 TraesCS1D01G282800 chr1B 94.805 1463 65 3 990 2447 510790647 510792103 0.000000e+00 2270.0
12 TraesCS1D01G282800 chr1B 95.050 1010 39 6 2446 3446 510792164 510793171 0.000000e+00 1578.0
13 TraesCS1D01G282800 chr1B 94.687 734 29 5 3444 4167 510793204 510793937 0.000000e+00 1131.0
14 TraesCS1D01G282800 chr3D 79.410 1695 257 53 973 2614 28218146 28216491 0.000000e+00 1112.0
15 TraesCS1D01G282800 chr3D 80.621 1450 210 45 991 2419 27662997 27664396 0.000000e+00 1055.0
16 TraesCS1D01G282800 chr3D 80.785 1197 184 25 1169 2335 28124475 28123295 0.000000e+00 894.0
17 TraesCS1D01G282800 chr3D 77.971 1262 225 35 1388 2615 28224566 28223324 0.000000e+00 741.0
18 TraesCS1D01G282800 chr3D 77.768 1192 226 30 1217 2380 28275262 28276442 0.000000e+00 697.0
19 TraesCS1D01G282800 chr3D 74.797 1230 252 39 1218 2402 4995449 4996665 6.220000e-138 501.0
20 TraesCS1D01G282800 chr3D 79.882 676 99 17 3510 4161 28277867 28278529 1.060000e-125 460.0
21 TraesCS1D01G282800 chr3D 83.099 142 21 3 3102 3241 28235108 28235248 4.370000e-25 126.0
22 TraesCS1D01G282800 chr3D 79.646 113 21 2 3888 3999 27885042 27884931 3.450000e-11 80.5
23 TraesCS1D01G282800 chr3A 80.269 1485 220 35 973 2421 38136816 38135369 0.000000e+00 1051.0
24 TraesCS1D01G282800 chr3A 80.116 1212 188 32 1160 2335 38013589 38012395 0.000000e+00 854.0
25 TraesCS1D01G282800 chr3A 80.033 606 115 6 1675 2276 38160008 38159405 1.060000e-120 444.0
26 TraesCS1D01G282800 chr3A 81.179 526 60 18 980 1486 38160590 38160085 1.820000e-103 387.0
27 TraesCS1D01G282800 chr3A 77.632 380 46 25 3003 3377 37802219 37802564 1.180000e-45 195.0
28 TraesCS1D01G282800 chr3A 83.803 142 20 3 3102 3241 38199454 38199594 9.400000e-27 132.0
29 TraesCS1D01G282800 chr3B 80.149 1481 225 43 973 2421 47211301 47209858 0.000000e+00 1042.0
30 TraesCS1D01G282800 chr3B 78.315 1697 278 52 973 2615 47223145 47221485 0.000000e+00 1013.0
31 TraesCS1D01G282800 chr3B 78.031 1229 206 30 1021 2209 46254332 46255536 0.000000e+00 715.0
32 TraesCS1D01G282800 chr3B 79.896 771 131 18 1573 2335 46328528 46329282 1.020000e-150 544.0
33 TraesCS1D01G282800 chr3B 81.333 675 94 17 3510 4167 47272514 47273173 1.720000e-143 520.0
34 TraesCS1D01G282800 chr3B 83.061 490 72 8 1846 2334 46305475 46305954 6.400000e-118 435.0
35 TraesCS1D01G282800 chr3B 81.893 486 62 12 3491 3960 47208716 47208241 1.820000e-103 387.0
36 TraesCS1D01G282800 chr3B 95.385 65 3 0 837 901 46254228 46254292 2.050000e-18 104.0
37 TraesCS1D01G282800 chr2B 94.845 291 14 1 1 291 415929132 415928843 1.770000e-123 453.0
38 TraesCS1D01G282800 chr2B 82.096 229 35 4 2446 2670 787787572 787787798 1.530000e-44 191.0
39 TraesCS1D01G282800 chr2B 81.481 216 32 4 2449 2659 787033791 787033579 1.990000e-38 171.0
40 TraesCS1D01G282800 chr2A 89.547 287 17 3 1 287 207659599 207659326 6.630000e-93 351.0
41 TraesCS1D01G282800 chr2A 79.185 466 57 17 3496 3948 771972095 771972533 1.900000e-73 287.0
42 TraesCS1D01G282800 chr2A 81.905 210 28 5 2423 2624 771970988 771971195 7.160000e-38 169.0
43 TraesCS1D01G282800 chr2D 79.614 466 55 17 3496 3948 650599880 650600318 8.760000e-77 298.0
44 TraesCS1D01G282800 chr2D 85.083 181 23 2 2446 2624 650598802 650598980 9.200000e-42 182.0
45 TraesCS1D01G282800 chrUn 80.117 171 26 5 2511 2674 32289059 32288890 2.030000e-23 121.0
46 TraesCS1D01G282800 chrUn 79.532 171 27 5 2511 2674 225560327 225560158 9.470000e-22 115.0
47 TraesCS1D01G282800 chrUn 79.532 171 27 5 2511 2674 237464043 237464212 9.470000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G282800 chr1D 381003809 381007975 4166 False 3480.000000 6237 100.000000 1 4167 2 chr1D.!!$F3 4166
1 TraesCS1D01G282800 chr1D 456277590 456280637 3047 True 676.500000 928 81.175500 991 3960 2 chr1D.!!$R1 2969
2 TraesCS1D01G282800 chr1A 481627866 481631032 3166 False 1588.666667 2684 95.114333 973 4167 3 chr1A.!!$F1 3194
3 TraesCS1D01G282800 chr1B 510790647 510793937 3290 False 1659.666667 2270 94.847333 990 4167 3 chr1B.!!$F1 3177
4 TraesCS1D01G282800 chr3D 28216491 28218146 1655 True 1112.000000 1112 79.410000 973 2614 1 chr3D.!!$R3 1641
5 TraesCS1D01G282800 chr3D 27662997 27664396 1399 False 1055.000000 1055 80.621000 991 2419 1 chr3D.!!$F2 1428
6 TraesCS1D01G282800 chr3D 28123295 28124475 1180 True 894.000000 894 80.785000 1169 2335 1 chr3D.!!$R2 1166
7 TraesCS1D01G282800 chr3D 28223324 28224566 1242 True 741.000000 741 77.971000 1388 2615 1 chr3D.!!$R4 1227
8 TraesCS1D01G282800 chr3D 28275262 28278529 3267 False 578.500000 697 78.825000 1217 4161 2 chr3D.!!$F4 2944
9 TraesCS1D01G282800 chr3D 4995449 4996665 1216 False 501.000000 501 74.797000 1218 2402 1 chr3D.!!$F1 1184
10 TraesCS1D01G282800 chr3A 38135369 38136816 1447 True 1051.000000 1051 80.269000 973 2421 1 chr3A.!!$R2 1448
11 TraesCS1D01G282800 chr3A 38012395 38013589 1194 True 854.000000 854 80.116000 1160 2335 1 chr3A.!!$R1 1175
12 TraesCS1D01G282800 chr3A 38159405 38160590 1185 True 415.500000 444 80.606000 980 2276 2 chr3A.!!$R3 1296
13 TraesCS1D01G282800 chr3B 47221485 47223145 1660 True 1013.000000 1013 78.315000 973 2615 1 chr3B.!!$R1 1642
14 TraesCS1D01G282800 chr3B 47208241 47211301 3060 True 714.500000 1042 81.021000 973 3960 2 chr3B.!!$R2 2987
15 TraesCS1D01G282800 chr3B 46328528 46329282 754 False 544.000000 544 79.896000 1573 2335 1 chr3B.!!$F2 762
16 TraesCS1D01G282800 chr3B 47272514 47273173 659 False 520.000000 520 81.333000 3510 4167 1 chr3B.!!$F3 657
17 TraesCS1D01G282800 chr3B 46254228 46255536 1308 False 409.500000 715 86.708000 837 2209 2 chr3B.!!$F4 1372
18 TraesCS1D01G282800 chr2A 771970988 771972533 1545 False 228.000000 287 80.545000 2423 3948 2 chr2A.!!$F1 1525
19 TraesCS1D01G282800 chr2D 650598802 650600318 1516 False 240.000000 298 82.348500 2446 3948 2 chr2D.!!$F1 1502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 944 0.038159 ACTCACTGCTACAACTCCGC 60.038 55.0 0.0 0.0 0.0 5.54 F
944 945 0.244994 CTCACTGCTACAACTCCGCT 59.755 55.0 0.0 0.0 0.0 5.52 F
945 946 0.679505 TCACTGCTACAACTCCGCTT 59.320 50.0 0.0 0.0 0.0 4.68 F
1496 1580 0.729116 CGATTCGACTTTGGCAGCAT 59.271 50.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 1955 1.077265 CCAACAAGCATCCCAGGGT 59.923 57.895 5.01 0.0 0.0 4.34 R
2430 2612 3.653344 TGATGACTACGCAATATGGCTC 58.347 45.455 0.00 0.0 0.0 4.70 R
2796 3132 4.691216 GTCAAGAAGCGAAAACTCTACCAT 59.309 41.667 0.00 0.0 0.0 3.55 R
3297 3683 0.896940 AGCAGTTTGAGGGTGCATGG 60.897 55.000 0.00 0.0 39.8 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.988815 ATGGACTCTTTAATAGCAGTTACTATG 57.011 33.333 0.00 0.00 33.12 2.23
27 28 7.926555 TGGACTCTTTAATAGCAGTTACTATGC 59.073 37.037 0.00 0.00 44.18 3.14
37 38 4.697514 GCAGTTACTATGCTCAATGAGGA 58.302 43.478 12.66 9.97 40.59 3.71
38 39 4.749099 GCAGTTACTATGCTCAATGAGGAG 59.251 45.833 12.66 0.86 40.59 3.69
39 40 5.295950 CAGTTACTATGCTCAATGAGGAGG 58.704 45.833 12.66 8.89 32.71 4.30
40 41 5.069648 CAGTTACTATGCTCAATGAGGAGGA 59.930 44.000 12.66 0.82 39.66 3.71
41 42 5.843421 AGTTACTATGCTCAATGAGGAGGAT 59.157 40.000 12.66 1.35 46.11 3.24
42 43 7.013220 AGTTACTATGCTCAATGAGGAGGATA 58.987 38.462 12.66 4.54 43.13 2.59
45 46 2.333069 TGCTCAATGAGGAGGATAGGG 58.667 52.381 12.66 0.00 35.41 3.53
46 47 2.090550 TGCTCAATGAGGAGGATAGGGA 60.091 50.000 12.66 0.00 35.41 4.20
47 48 3.180507 GCTCAATGAGGAGGATAGGGAT 58.819 50.000 12.66 0.00 35.41 3.85
48 49 4.202825 TGCTCAATGAGGAGGATAGGGATA 60.203 45.833 12.66 0.00 35.41 2.59
49 50 4.405358 GCTCAATGAGGAGGATAGGGATAG 59.595 50.000 12.66 0.00 35.41 2.08
50 51 5.812699 GCTCAATGAGGAGGATAGGGATAGA 60.813 48.000 12.66 0.00 35.41 1.98
51 52 6.429239 TCAATGAGGAGGATAGGGATAGAT 57.571 41.667 0.00 0.00 0.00 1.98
52 53 6.439487 TCAATGAGGAGGATAGGGATAGATC 58.561 44.000 0.00 0.00 0.00 2.75
53 54 4.890499 TGAGGAGGATAGGGATAGATCC 57.110 50.000 0.00 0.00 46.41 3.36
66 67 5.240013 GGATAGATCCATCTTTGCTTCCT 57.760 43.478 3.54 0.00 46.38 3.36
67 68 5.629125 GGATAGATCCATCTTTGCTTCCTT 58.371 41.667 3.54 0.00 46.38 3.36
68 69 5.472820 GGATAGATCCATCTTTGCTTCCTTG 59.527 44.000 3.54 0.00 46.38 3.61
69 70 4.581309 AGATCCATCTTTGCTTCCTTGA 57.419 40.909 0.00 0.00 31.97 3.02
70 71 5.126699 AGATCCATCTTTGCTTCCTTGAT 57.873 39.130 0.00 0.00 31.97 2.57
71 72 4.888239 AGATCCATCTTTGCTTCCTTGATG 59.112 41.667 0.00 0.00 31.97 3.07
72 73 2.756760 TCCATCTTTGCTTCCTTGATGC 59.243 45.455 0.00 0.00 34.79 3.91
73 74 2.479049 CCATCTTTGCTTCCTTGATGCG 60.479 50.000 0.00 0.00 35.83 4.73
74 75 1.167851 TCTTTGCTTCCTTGATGCGG 58.832 50.000 0.00 0.00 35.83 5.69
75 76 0.171903 CTTTGCTTCCTTGATGCGGG 59.828 55.000 0.00 0.00 35.83 6.13
76 77 0.251121 TTTGCTTCCTTGATGCGGGA 60.251 50.000 0.00 0.00 35.83 5.14
77 78 0.677731 TTGCTTCCTTGATGCGGGAG 60.678 55.000 0.00 0.00 35.83 4.30
78 79 1.221840 GCTTCCTTGATGCGGGAGA 59.778 57.895 0.00 0.00 32.80 3.71
79 80 0.179034 GCTTCCTTGATGCGGGAGAT 60.179 55.000 0.00 0.00 32.80 2.75
80 81 1.876322 CTTCCTTGATGCGGGAGATC 58.124 55.000 0.00 0.00 32.80 2.75
81 82 1.139654 CTTCCTTGATGCGGGAGATCA 59.860 52.381 0.00 0.00 32.80 2.92
82 83 1.203237 TCCTTGATGCGGGAGATCAA 58.797 50.000 0.00 0.00 37.46 2.57
84 85 0.942962 CTTGATGCGGGAGATCAAGC 59.057 55.000 9.90 0.00 45.96 4.01
85 86 0.543277 TTGATGCGGGAGATCAAGCT 59.457 50.000 0.00 0.00 35.38 3.74
86 87 0.543277 TGATGCGGGAGATCAAGCTT 59.457 50.000 0.00 0.00 0.00 3.74
87 88 1.224965 GATGCGGGAGATCAAGCTTC 58.775 55.000 0.00 0.00 0.00 3.86
88 89 0.835941 ATGCGGGAGATCAAGCTTCT 59.164 50.000 0.00 0.00 0.00 2.85
89 90 0.107993 TGCGGGAGATCAAGCTTCTG 60.108 55.000 0.00 0.00 0.00 3.02
90 91 0.107945 GCGGGAGATCAAGCTTCTGT 60.108 55.000 0.00 0.00 0.00 3.41
91 92 1.677217 GCGGGAGATCAAGCTTCTGTT 60.677 52.381 0.00 0.00 0.00 3.16
92 93 2.005451 CGGGAGATCAAGCTTCTGTTG 58.995 52.381 0.00 0.00 0.00 3.33
93 94 2.354103 CGGGAGATCAAGCTTCTGTTGA 60.354 50.000 0.00 0.00 38.28 3.18
94 95 3.269178 GGGAGATCAAGCTTCTGTTGAG 58.731 50.000 0.00 0.00 37.35 3.02
95 96 3.307339 GGGAGATCAAGCTTCTGTTGAGT 60.307 47.826 0.00 0.00 37.35 3.41
96 97 3.932089 GGAGATCAAGCTTCTGTTGAGTC 59.068 47.826 0.00 0.00 37.35 3.36
97 98 4.322650 GGAGATCAAGCTTCTGTTGAGTCT 60.323 45.833 0.00 0.00 37.35 3.24
98 99 5.226194 AGATCAAGCTTCTGTTGAGTCTT 57.774 39.130 0.00 0.00 37.35 3.01
99 100 5.237048 AGATCAAGCTTCTGTTGAGTCTTC 58.763 41.667 0.00 0.00 37.35 2.87
100 101 3.384668 TCAAGCTTCTGTTGAGTCTTCG 58.615 45.455 0.00 0.00 30.36 3.79
101 102 2.447244 AGCTTCTGTTGAGTCTTCGG 57.553 50.000 0.00 0.00 0.00 4.30
102 103 1.964223 AGCTTCTGTTGAGTCTTCGGA 59.036 47.619 0.00 0.00 0.00 4.55
103 104 2.062519 GCTTCTGTTGAGTCTTCGGAC 58.937 52.381 0.00 0.00 44.75 4.79
112 113 3.582743 GTCTTCGGACGACCTTTGT 57.417 52.632 3.40 0.00 35.10 2.83
113 114 1.137513 GTCTTCGGACGACCTTTGTG 58.862 55.000 3.40 0.00 35.10 3.33
114 115 0.748450 TCTTCGGACGACCTTTGTGT 59.252 50.000 1.72 0.00 0.00 3.72
115 116 1.137513 CTTCGGACGACCTTTGTGTC 58.862 55.000 1.72 0.00 0.00 3.67
116 117 0.460722 TTCGGACGACCTTTGTGTCA 59.539 50.000 1.72 0.00 34.88 3.58
117 118 0.249155 TCGGACGACCTTTGTGTCAC 60.249 55.000 1.72 0.00 34.88 3.67
118 119 0.528901 CGGACGACCTTTGTGTCACA 60.529 55.000 0.18 0.18 34.88 3.58
119 120 1.872237 CGGACGACCTTTGTGTCACAT 60.872 52.381 6.48 0.00 34.88 3.21
120 121 2.608506 CGGACGACCTTTGTGTCACATA 60.609 50.000 6.48 0.76 34.88 2.29
121 122 3.596214 GGACGACCTTTGTGTCACATAT 58.404 45.455 6.48 0.00 34.88 1.78
122 123 4.000988 GGACGACCTTTGTGTCACATATT 58.999 43.478 6.48 0.00 34.88 1.28
123 124 4.454504 GGACGACCTTTGTGTCACATATTT 59.545 41.667 6.48 0.00 34.88 1.40
124 125 5.390567 GGACGACCTTTGTGTCACATATTTC 60.391 44.000 6.48 1.28 34.88 2.17
125 126 5.305585 ACGACCTTTGTGTCACATATTTCT 58.694 37.500 6.48 0.00 34.88 2.52
126 127 5.408604 ACGACCTTTGTGTCACATATTTCTC 59.591 40.000 6.48 0.00 34.88 2.87
127 128 5.444613 CGACCTTTGTGTCACATATTTCTCG 60.445 44.000 6.48 5.39 34.88 4.04
128 129 4.695455 ACCTTTGTGTCACATATTTCTCGG 59.305 41.667 6.48 1.44 0.00 4.63
129 130 4.094887 CCTTTGTGTCACATATTTCTCGGG 59.905 45.833 6.48 0.00 0.00 5.14
130 131 4.545208 TTGTGTCACATATTTCTCGGGA 57.455 40.909 6.48 0.00 0.00 5.14
131 132 3.857052 TGTGTCACATATTTCTCGGGAC 58.143 45.455 0.18 0.00 0.00 4.46
132 133 3.195661 GTGTCACATATTTCTCGGGACC 58.804 50.000 0.00 0.00 0.00 4.46
133 134 2.835156 TGTCACATATTTCTCGGGACCA 59.165 45.455 0.00 0.00 0.00 4.02
134 135 3.118775 TGTCACATATTTCTCGGGACCAG 60.119 47.826 0.00 0.00 0.00 4.00
135 136 3.132289 GTCACATATTTCTCGGGACCAGA 59.868 47.826 0.00 0.00 0.00 3.86
136 137 3.772572 TCACATATTTCTCGGGACCAGAA 59.227 43.478 0.00 0.00 0.00 3.02
137 138 4.408921 TCACATATTTCTCGGGACCAGAAT 59.591 41.667 0.00 0.00 29.89 2.40
138 139 5.104527 TCACATATTTCTCGGGACCAGAATT 60.105 40.000 0.00 0.00 29.89 2.17
139 140 5.590259 CACATATTTCTCGGGACCAGAATTT 59.410 40.000 0.00 0.00 29.89 1.82
140 141 6.095440 CACATATTTCTCGGGACCAGAATTTT 59.905 38.462 0.00 0.00 29.89 1.82
141 142 6.095440 ACATATTTCTCGGGACCAGAATTTTG 59.905 38.462 0.00 1.79 29.89 2.44
142 143 3.502123 TTCTCGGGACCAGAATTTTGT 57.498 42.857 0.00 0.00 0.00 2.83
143 144 3.053831 TCTCGGGACCAGAATTTTGTC 57.946 47.619 0.00 0.00 0.00 3.18
144 145 2.370519 TCTCGGGACCAGAATTTTGTCA 59.629 45.455 0.00 0.00 0.00 3.58
145 146 2.744202 CTCGGGACCAGAATTTTGTCAG 59.256 50.000 0.00 0.00 0.00 3.51
146 147 2.105821 TCGGGACCAGAATTTTGTCAGT 59.894 45.455 0.00 0.00 0.00 3.41
147 148 2.226437 CGGGACCAGAATTTTGTCAGTG 59.774 50.000 0.00 0.00 0.00 3.66
148 149 3.486383 GGGACCAGAATTTTGTCAGTGA 58.514 45.455 0.00 0.00 0.00 3.41
149 150 4.082125 GGGACCAGAATTTTGTCAGTGAT 58.918 43.478 0.00 0.00 0.00 3.06
150 151 4.524328 GGGACCAGAATTTTGTCAGTGATT 59.476 41.667 0.00 0.00 0.00 2.57
151 152 5.011023 GGGACCAGAATTTTGTCAGTGATTT 59.989 40.000 0.00 0.00 0.00 2.17
152 153 6.462909 GGGACCAGAATTTTGTCAGTGATTTT 60.463 38.462 0.00 0.00 0.00 1.82
153 154 6.986231 GGACCAGAATTTTGTCAGTGATTTTT 59.014 34.615 0.00 0.00 0.00 1.94
173 174 6.412362 TTTTTGGCTAAATTTGCTAGGACA 57.588 33.333 0.00 0.00 0.00 4.02
174 175 5.643379 TTTGGCTAAATTTGCTAGGACAG 57.357 39.130 0.00 0.00 0.00 3.51
175 176 4.568072 TGGCTAAATTTGCTAGGACAGA 57.432 40.909 0.00 0.00 0.00 3.41
176 177 4.917385 TGGCTAAATTTGCTAGGACAGAA 58.083 39.130 0.00 0.00 0.00 3.02
177 178 5.321102 TGGCTAAATTTGCTAGGACAGAAA 58.679 37.500 0.00 0.00 0.00 2.52
178 179 5.415701 TGGCTAAATTTGCTAGGACAGAAAG 59.584 40.000 0.00 0.00 0.00 2.62
179 180 5.416013 GGCTAAATTTGCTAGGACAGAAAGT 59.584 40.000 0.00 0.00 0.00 2.66
180 181 6.598064 GGCTAAATTTGCTAGGACAGAAAGTA 59.402 38.462 0.00 0.00 0.00 2.24
181 182 7.201652 GGCTAAATTTGCTAGGACAGAAAGTAG 60.202 40.741 0.00 0.00 0.00 2.57
182 183 7.549488 GCTAAATTTGCTAGGACAGAAAGTAGA 59.451 37.037 0.00 0.00 0.00 2.59
183 184 9.436957 CTAAATTTGCTAGGACAGAAAGTAGAA 57.563 33.333 0.00 0.00 0.00 2.10
184 185 7.674471 AATTTGCTAGGACAGAAAGTAGAAC 57.326 36.000 0.00 0.00 0.00 3.01
185 186 6.420913 TTTGCTAGGACAGAAAGTAGAACT 57.579 37.500 0.00 0.00 0.00 3.01
186 187 7.534723 TTTGCTAGGACAGAAAGTAGAACTA 57.465 36.000 0.00 0.00 0.00 2.24
187 188 7.719871 TTGCTAGGACAGAAAGTAGAACTAT 57.280 36.000 0.00 0.00 0.00 2.12
188 189 8.818622 TTGCTAGGACAGAAAGTAGAACTATA 57.181 34.615 0.00 0.00 0.00 1.31
189 190 8.453238 TGCTAGGACAGAAAGTAGAACTATAG 57.547 38.462 0.00 0.00 0.00 1.31
190 191 8.053963 TGCTAGGACAGAAAGTAGAACTATAGT 58.946 37.037 0.00 0.00 0.00 2.12
191 192 8.905850 GCTAGGACAGAAAGTAGAACTATAGTT 58.094 37.037 18.05 18.05 41.64 2.24
194 195 8.532819 AGGACAGAAAGTAGAACTATAGTTTGG 58.467 37.037 18.96 4.75 38.56 3.28
195 196 8.312564 GGACAGAAAGTAGAACTATAGTTTGGT 58.687 37.037 18.96 9.80 38.56 3.67
196 197 9.708092 GACAGAAAGTAGAACTATAGTTTGGTT 57.292 33.333 18.96 9.43 38.56 3.67
210 211 4.649088 GTTTGGTTAAACTCTGGCTTGT 57.351 40.909 0.00 0.00 42.26 3.16
211 212 4.607955 GTTTGGTTAAACTCTGGCTTGTC 58.392 43.478 0.00 0.00 42.26 3.18
212 213 3.569194 TGGTTAAACTCTGGCTTGTCA 57.431 42.857 0.00 0.00 0.00 3.58
213 214 3.476552 TGGTTAAACTCTGGCTTGTCAG 58.523 45.455 0.00 0.00 36.17 3.51
214 215 3.135712 TGGTTAAACTCTGGCTTGTCAGA 59.864 43.478 4.80 4.80 41.03 3.27
236 237 5.339008 AGGTACTCGATCTTTGTATTGCA 57.661 39.130 0.00 0.00 0.00 4.08
237 238 5.352284 AGGTACTCGATCTTTGTATTGCAG 58.648 41.667 0.00 0.00 0.00 4.41
238 239 5.127194 AGGTACTCGATCTTTGTATTGCAGA 59.873 40.000 0.00 0.00 0.00 4.26
239 240 5.232414 GGTACTCGATCTTTGTATTGCAGAC 59.768 44.000 0.00 0.00 0.00 3.51
240 241 5.078411 ACTCGATCTTTGTATTGCAGACT 57.922 39.130 2.89 0.00 0.00 3.24
241 242 4.867047 ACTCGATCTTTGTATTGCAGACTG 59.133 41.667 0.00 0.00 0.00 3.51
242 243 4.820897 TCGATCTTTGTATTGCAGACTGT 58.179 39.130 3.99 0.00 0.00 3.55
243 244 4.627035 TCGATCTTTGTATTGCAGACTGTG 59.373 41.667 3.99 0.00 0.00 3.66
244 245 4.201753 CGATCTTTGTATTGCAGACTGTGG 60.202 45.833 3.99 0.00 0.00 4.17
245 246 4.085357 TCTTTGTATTGCAGACTGTGGT 57.915 40.909 3.99 0.00 0.00 4.16
246 247 3.814842 TCTTTGTATTGCAGACTGTGGTG 59.185 43.478 3.99 0.00 0.00 4.17
247 248 3.483808 TTGTATTGCAGACTGTGGTGA 57.516 42.857 3.99 0.00 0.00 4.02
248 249 3.701205 TGTATTGCAGACTGTGGTGAT 57.299 42.857 3.99 0.00 0.00 3.06
249 250 4.019792 TGTATTGCAGACTGTGGTGATT 57.980 40.909 3.99 0.00 0.00 2.57
250 251 4.002982 TGTATTGCAGACTGTGGTGATTC 58.997 43.478 3.99 0.00 0.00 2.52
251 252 2.936919 TTGCAGACTGTGGTGATTCT 57.063 45.000 3.99 0.00 0.00 2.40
252 253 2.174363 TGCAGACTGTGGTGATTCTG 57.826 50.000 3.99 0.00 38.83 3.02
254 255 1.446907 CAGACTGTGGTGATTCTGCC 58.553 55.000 0.00 0.00 29.71 4.85
255 256 1.059098 AGACTGTGGTGATTCTGCCA 58.941 50.000 0.00 0.00 0.00 4.92
256 257 1.632409 AGACTGTGGTGATTCTGCCAT 59.368 47.619 4.35 0.00 37.09 4.40
257 258 2.040813 AGACTGTGGTGATTCTGCCATT 59.959 45.455 4.35 0.00 37.09 3.16
258 259 2.821969 GACTGTGGTGATTCTGCCATTT 59.178 45.455 4.35 0.00 37.09 2.32
259 260 2.559668 ACTGTGGTGATTCTGCCATTTG 59.440 45.455 4.35 2.11 37.09 2.32
260 261 2.821378 CTGTGGTGATTCTGCCATTTGA 59.179 45.455 4.35 0.00 37.09 2.69
261 262 2.821378 TGTGGTGATTCTGCCATTTGAG 59.179 45.455 4.35 0.00 37.09 3.02
262 263 2.821969 GTGGTGATTCTGCCATTTGAGT 59.178 45.455 4.35 0.00 37.09 3.41
263 264 4.009675 GTGGTGATTCTGCCATTTGAGTA 58.990 43.478 4.35 0.00 37.09 2.59
264 265 4.458989 GTGGTGATTCTGCCATTTGAGTAA 59.541 41.667 4.35 0.00 37.09 2.24
265 266 5.126061 GTGGTGATTCTGCCATTTGAGTAAT 59.874 40.000 4.35 0.00 37.09 1.89
266 267 6.318648 GTGGTGATTCTGCCATTTGAGTAATA 59.681 38.462 4.35 0.00 37.09 0.98
267 268 6.318648 TGGTGATTCTGCCATTTGAGTAATAC 59.681 38.462 0.00 0.00 0.00 1.89
268 269 6.318648 GGTGATTCTGCCATTTGAGTAATACA 59.681 38.462 0.00 0.00 0.00 2.29
269 270 7.013655 GGTGATTCTGCCATTTGAGTAATACAT 59.986 37.037 0.00 0.00 0.00 2.29
270 271 8.408601 GTGATTCTGCCATTTGAGTAATACATT 58.591 33.333 0.00 0.00 0.00 2.71
271 272 8.970020 TGATTCTGCCATTTGAGTAATACATTT 58.030 29.630 0.00 0.00 0.00 2.32
272 273 9.807649 GATTCTGCCATTTGAGTAATACATTTT 57.192 29.630 0.00 0.00 0.00 1.82
274 275 9.638239 TTCTGCCATTTGAGTAATACATTTTTC 57.362 29.630 0.00 0.00 0.00 2.29
275 276 8.801299 TCTGCCATTTGAGTAATACATTTTTCA 58.199 29.630 0.00 0.00 0.00 2.69
276 277 9.421806 CTGCCATTTGAGTAATACATTTTTCAA 57.578 29.630 0.00 0.00 0.00 2.69
277 278 9.202273 TGCCATTTGAGTAATACATTTTTCAAC 57.798 29.630 0.00 0.00 0.00 3.18
278 279 8.655970 GCCATTTGAGTAATACATTTTTCAACC 58.344 33.333 0.00 0.00 0.00 3.77
279 280 8.859156 CCATTTGAGTAATACATTTTTCAACCG 58.141 33.333 0.00 0.00 0.00 4.44
280 281 7.861176 TTTGAGTAATACATTTTTCAACCGC 57.139 32.000 0.00 0.00 0.00 5.68
281 282 6.561737 TGAGTAATACATTTTTCAACCGCA 57.438 33.333 0.00 0.00 0.00 5.69
282 283 6.971602 TGAGTAATACATTTTTCAACCGCAA 58.028 32.000 0.00 0.00 0.00 4.85
283 284 7.426410 TGAGTAATACATTTTTCAACCGCAAA 58.574 30.769 0.00 0.00 0.00 3.68
284 285 7.921214 TGAGTAATACATTTTTCAACCGCAAAA 59.079 29.630 0.00 0.00 0.00 2.44
285 286 8.649973 AGTAATACATTTTTCAACCGCAAAAA 57.350 26.923 0.00 0.00 37.18 1.94
306 307 5.927281 AAAAATGCAAGCCATGACTCTAT 57.073 34.783 0.00 0.00 33.49 1.98
307 308 5.927281 AAAATGCAAGCCATGACTCTATT 57.073 34.783 0.00 0.00 33.49 1.73
308 309 5.511234 AAATGCAAGCCATGACTCTATTC 57.489 39.130 0.00 0.00 33.49 1.75
309 310 3.632643 TGCAAGCCATGACTCTATTCA 57.367 42.857 0.00 0.00 0.00 2.57
310 311 3.273434 TGCAAGCCATGACTCTATTCAC 58.727 45.455 0.00 0.00 0.00 3.18
311 312 2.286294 GCAAGCCATGACTCTATTCACG 59.714 50.000 0.00 0.00 0.00 4.35
312 313 3.525537 CAAGCCATGACTCTATTCACGT 58.474 45.455 0.00 0.00 0.00 4.49
313 314 4.682787 CAAGCCATGACTCTATTCACGTA 58.317 43.478 0.00 0.00 0.00 3.57
314 315 4.576216 AGCCATGACTCTATTCACGTAG 57.424 45.455 0.00 0.00 0.00 3.51
315 316 3.053455 GCCATGACTCTATTCACGTAGC 58.947 50.000 0.00 0.00 0.00 3.58
316 317 3.490933 GCCATGACTCTATTCACGTAGCA 60.491 47.826 0.00 0.00 0.00 3.49
317 318 4.682787 CCATGACTCTATTCACGTAGCAA 58.317 43.478 0.00 0.00 0.00 3.91
318 319 4.504461 CCATGACTCTATTCACGTAGCAAC 59.496 45.833 0.00 0.00 0.00 4.17
319 320 4.776795 TGACTCTATTCACGTAGCAACA 57.223 40.909 0.00 0.00 0.00 3.33
320 321 4.482386 TGACTCTATTCACGTAGCAACAC 58.518 43.478 0.00 0.00 0.00 3.32
321 322 4.022676 TGACTCTATTCACGTAGCAACACA 60.023 41.667 0.00 0.00 0.00 3.72
322 323 5.073311 ACTCTATTCACGTAGCAACACAT 57.927 39.130 0.00 0.00 0.00 3.21
323 324 4.864806 ACTCTATTCACGTAGCAACACATG 59.135 41.667 0.00 0.00 0.00 3.21
324 325 4.180817 TCTATTCACGTAGCAACACATGG 58.819 43.478 0.00 0.00 0.00 3.66
325 326 2.248280 TTCACGTAGCAACACATGGT 57.752 45.000 0.00 0.00 43.54 3.55
326 327 1.790755 TCACGTAGCAACACATGGTC 58.209 50.000 0.00 0.00 40.93 4.02
327 328 1.069358 TCACGTAGCAACACATGGTCA 59.931 47.619 0.00 0.00 40.93 4.02
328 329 2.076100 CACGTAGCAACACATGGTCAT 58.924 47.619 0.00 0.00 40.93 3.06
329 330 2.483877 CACGTAGCAACACATGGTCATT 59.516 45.455 0.00 0.00 40.93 2.57
330 331 2.742053 ACGTAGCAACACATGGTCATTC 59.258 45.455 0.00 0.00 40.93 2.67
331 332 2.741517 CGTAGCAACACATGGTCATTCA 59.258 45.455 0.00 0.00 40.93 2.57
332 333 3.188254 CGTAGCAACACATGGTCATTCAA 59.812 43.478 0.00 0.00 40.93 2.69
333 334 3.648339 AGCAACACATGGTCATTCAAC 57.352 42.857 0.00 0.00 33.56 3.18
334 335 3.225104 AGCAACACATGGTCATTCAACT 58.775 40.909 0.00 0.00 33.56 3.16
335 336 4.397420 AGCAACACATGGTCATTCAACTA 58.603 39.130 0.00 0.00 33.56 2.24
336 337 4.456911 AGCAACACATGGTCATTCAACTAG 59.543 41.667 0.00 0.00 33.56 2.57
337 338 4.216257 GCAACACATGGTCATTCAACTAGT 59.784 41.667 0.00 0.00 0.00 2.57
338 339 5.617751 GCAACACATGGTCATTCAACTAGTC 60.618 44.000 0.00 0.00 0.00 2.59
339 340 5.489792 ACACATGGTCATTCAACTAGTCT 57.510 39.130 0.00 0.00 0.00 3.24
340 341 5.869579 ACACATGGTCATTCAACTAGTCTT 58.130 37.500 0.00 0.00 0.00 3.01
341 342 6.299141 ACACATGGTCATTCAACTAGTCTTT 58.701 36.000 0.00 0.00 0.00 2.52
342 343 6.205464 ACACATGGTCATTCAACTAGTCTTTG 59.795 38.462 0.00 0.00 0.00 2.77
343 344 6.205464 CACATGGTCATTCAACTAGTCTTTGT 59.795 38.462 0.00 0.00 0.00 2.83
344 345 7.387673 CACATGGTCATTCAACTAGTCTTTGTA 59.612 37.037 0.00 0.00 0.00 2.41
345 346 7.604164 ACATGGTCATTCAACTAGTCTTTGTAG 59.396 37.037 0.00 0.00 0.00 2.74
346 347 5.932303 TGGTCATTCAACTAGTCTTTGTAGC 59.068 40.000 0.00 0.00 0.00 3.58
347 348 5.351740 GGTCATTCAACTAGTCTTTGTAGCC 59.648 44.000 0.00 0.00 0.00 3.93
348 349 5.932303 GTCATTCAACTAGTCTTTGTAGCCA 59.068 40.000 0.00 0.00 0.00 4.75
349 350 6.091441 GTCATTCAACTAGTCTTTGTAGCCAG 59.909 42.308 0.00 0.00 0.00 4.85
350 351 5.546621 TTCAACTAGTCTTTGTAGCCAGT 57.453 39.130 0.00 0.00 0.00 4.00
351 352 5.546621 TCAACTAGTCTTTGTAGCCAGTT 57.453 39.130 0.00 0.00 0.00 3.16
352 353 5.925509 TCAACTAGTCTTTGTAGCCAGTTT 58.074 37.500 0.00 0.00 0.00 2.66
353 354 7.058023 TCAACTAGTCTTTGTAGCCAGTTTA 57.942 36.000 0.00 0.00 0.00 2.01
354 355 7.502696 TCAACTAGTCTTTGTAGCCAGTTTAA 58.497 34.615 0.00 0.00 0.00 1.52
355 356 7.988599 TCAACTAGTCTTTGTAGCCAGTTTAAA 59.011 33.333 0.00 0.00 0.00 1.52
356 357 8.617809 CAACTAGTCTTTGTAGCCAGTTTAAAA 58.382 33.333 0.00 0.00 0.00 1.52
357 358 8.151141 ACTAGTCTTTGTAGCCAGTTTAAAAC 57.849 34.615 0.00 0.00 0.00 2.43
358 359 6.387041 AGTCTTTGTAGCCAGTTTAAAACC 57.613 37.500 0.00 0.00 0.00 3.27
359 360 5.889289 AGTCTTTGTAGCCAGTTTAAAACCA 59.111 36.000 0.00 0.00 0.00 3.67
360 361 6.549736 AGTCTTTGTAGCCAGTTTAAAACCAT 59.450 34.615 0.00 0.00 0.00 3.55
361 362 6.640907 GTCTTTGTAGCCAGTTTAAAACCATG 59.359 38.462 0.00 0.00 0.00 3.66
362 363 6.322712 TCTTTGTAGCCAGTTTAAAACCATGT 59.677 34.615 0.00 0.00 0.00 3.21
363 364 5.699097 TGTAGCCAGTTTAAAACCATGTC 57.301 39.130 0.00 0.00 0.00 3.06
364 365 5.381757 TGTAGCCAGTTTAAAACCATGTCT 58.618 37.500 0.00 0.00 0.00 3.41
365 366 5.830991 TGTAGCCAGTTTAAAACCATGTCTT 59.169 36.000 0.00 0.00 0.00 3.01
366 367 5.200368 AGCCAGTTTAAAACCATGTCTTG 57.800 39.130 0.00 0.00 0.00 3.02
367 368 4.892934 AGCCAGTTTAAAACCATGTCTTGA 59.107 37.500 0.00 0.00 0.00 3.02
368 369 5.362430 AGCCAGTTTAAAACCATGTCTTGAA 59.638 36.000 0.00 0.00 0.00 2.69
369 370 6.045955 GCCAGTTTAAAACCATGTCTTGAAA 58.954 36.000 0.00 0.00 0.00 2.69
370 371 6.705825 GCCAGTTTAAAACCATGTCTTGAAAT 59.294 34.615 0.00 0.00 0.00 2.17
371 372 7.307337 GCCAGTTTAAAACCATGTCTTGAAATG 60.307 37.037 0.00 0.00 0.00 2.32
372 373 7.710475 CCAGTTTAAAACCATGTCTTGAAATGT 59.290 33.333 0.00 0.00 0.00 2.71
373 374 9.743057 CAGTTTAAAACCATGTCTTGAAATGTA 57.257 29.630 0.00 0.00 0.00 2.29
378 379 6.764308 AACCATGTCTTGAAATGTATGAGG 57.236 37.500 0.00 0.00 0.00 3.86
379 380 6.065976 ACCATGTCTTGAAATGTATGAGGA 57.934 37.500 0.00 0.00 0.00 3.71
380 381 6.484288 ACCATGTCTTGAAATGTATGAGGAA 58.516 36.000 0.00 0.00 0.00 3.36
381 382 6.947733 ACCATGTCTTGAAATGTATGAGGAAA 59.052 34.615 0.00 0.00 0.00 3.13
382 383 7.094205 ACCATGTCTTGAAATGTATGAGGAAAC 60.094 37.037 0.00 0.00 0.00 2.78
384 385 7.439157 TGTCTTGAAATGTATGAGGAAACTG 57.561 36.000 0.00 0.00 44.43 3.16
385 386 7.223584 TGTCTTGAAATGTATGAGGAAACTGA 58.776 34.615 0.00 0.00 44.43 3.41
386 387 7.719193 TGTCTTGAAATGTATGAGGAAACTGAA 59.281 33.333 0.00 0.00 44.43 3.02
387 388 8.734386 GTCTTGAAATGTATGAGGAAACTGAAT 58.266 33.333 0.00 0.00 44.43 2.57
388 389 9.958180 TCTTGAAATGTATGAGGAAACTGAATA 57.042 29.630 0.00 0.00 44.43 1.75
812 813 3.750371 TGAGATTTATGCCCCCATTACG 58.250 45.455 0.00 0.00 32.85 3.18
813 814 2.488153 GAGATTTATGCCCCCATTACGC 59.512 50.000 0.00 0.00 32.85 4.42
814 815 2.158534 AGATTTATGCCCCCATTACGCA 60.159 45.455 0.00 0.00 36.84 5.24
815 816 1.686355 TTTATGCCCCCATTACGCAG 58.314 50.000 0.00 0.00 35.66 5.18
816 817 0.840617 TTATGCCCCCATTACGCAGA 59.159 50.000 0.00 0.00 35.66 4.26
817 818 1.064003 TATGCCCCCATTACGCAGAT 58.936 50.000 0.00 0.00 35.66 2.90
818 819 0.538057 ATGCCCCCATTACGCAGATG 60.538 55.000 0.00 0.00 35.66 2.90
819 820 2.555547 GCCCCCATTACGCAGATGC 61.556 63.158 0.00 0.00 37.78 3.91
820 821 1.152984 CCCCCATTACGCAGATGCA 60.153 57.895 5.55 0.00 42.21 3.96
821 822 1.168407 CCCCCATTACGCAGATGCAG 61.168 60.000 5.55 0.69 42.21 4.41
822 823 1.168407 CCCCATTACGCAGATGCAGG 61.168 60.000 5.55 0.00 42.21 4.85
823 824 1.650912 CCATTACGCAGATGCAGGC 59.349 57.895 5.55 0.00 42.21 4.85
829 830 3.260483 GCAGATGCAGGCGTCGAG 61.260 66.667 7.76 6.29 41.59 4.04
830 831 2.182791 CAGATGCAGGCGTCGAGT 59.817 61.111 7.76 0.00 37.08 4.18
831 832 2.163390 CAGATGCAGGCGTCGAGTG 61.163 63.158 7.76 0.00 37.08 3.51
832 833 2.181777 GATGCAGGCGTCGAGTGA 59.818 61.111 0.00 0.00 0.00 3.41
833 834 1.875813 GATGCAGGCGTCGAGTGAG 60.876 63.158 0.00 0.00 0.00 3.51
834 835 3.997064 ATGCAGGCGTCGAGTGAGC 62.997 63.158 0.00 0.00 0.00 4.26
857 858 0.958822 GGCCCAACACCACTACTTTG 59.041 55.000 0.00 0.00 0.00 2.77
863 864 3.312421 CCAACACCACTACTTTGTCAGTG 59.688 47.826 0.00 0.00 41.51 3.66
901 902 0.317160 CACGGGTGAACTCACTGCTA 59.683 55.000 9.60 0.00 45.73 3.49
903 904 0.317160 CGGGTGAACTCACTGCTACA 59.683 55.000 9.60 0.00 45.73 2.74
907 908 3.006537 GGGTGAACTCACTGCTACAACTA 59.993 47.826 9.60 0.00 45.73 2.24
908 909 4.238514 GGTGAACTCACTGCTACAACTAG 58.761 47.826 9.60 0.00 45.73 2.57
909 910 4.022242 GGTGAACTCACTGCTACAACTAGA 60.022 45.833 9.60 0.00 45.73 2.43
910 911 5.336849 GGTGAACTCACTGCTACAACTAGAT 60.337 44.000 9.60 0.00 45.73 1.98
911 912 5.802956 GTGAACTCACTGCTACAACTAGATC 59.197 44.000 0.00 0.00 43.25 2.75
912 913 4.993029 ACTCACTGCTACAACTAGATCC 57.007 45.455 0.00 0.00 0.00 3.36
913 914 4.605183 ACTCACTGCTACAACTAGATCCT 58.395 43.478 0.00 0.00 0.00 3.24
915 916 4.600062 TCACTGCTACAACTAGATCCTCA 58.400 43.478 0.00 0.00 0.00 3.86
916 917 5.016831 TCACTGCTACAACTAGATCCTCAA 58.983 41.667 0.00 0.00 0.00 3.02
917 918 5.480422 TCACTGCTACAACTAGATCCTCAAA 59.520 40.000 0.00 0.00 0.00 2.69
918 919 6.014584 TCACTGCTACAACTAGATCCTCAAAA 60.015 38.462 0.00 0.00 0.00 2.44
919 920 6.650807 CACTGCTACAACTAGATCCTCAAAAA 59.349 38.462 0.00 0.00 0.00 1.94
920 921 6.876257 ACTGCTACAACTAGATCCTCAAAAAG 59.124 38.462 0.00 0.00 0.00 2.27
921 922 7.004555 TGCTACAACTAGATCCTCAAAAAGA 57.995 36.000 0.00 0.00 0.00 2.52
922 923 7.450074 TGCTACAACTAGATCCTCAAAAAGAA 58.550 34.615 0.00 0.00 0.00 2.52
923 924 7.936847 TGCTACAACTAGATCCTCAAAAAGAAA 59.063 33.333 0.00 0.00 0.00 2.52
924 925 8.784043 GCTACAACTAGATCCTCAAAAAGAAAA 58.216 33.333 0.00 0.00 0.00 2.29
926 927 8.753497 ACAACTAGATCCTCAAAAAGAAAACT 57.247 30.769 0.00 0.00 0.00 2.66
927 928 8.841300 ACAACTAGATCCTCAAAAAGAAAACTC 58.159 33.333 0.00 0.00 0.00 3.01
928 929 8.840321 CAACTAGATCCTCAAAAAGAAAACTCA 58.160 33.333 0.00 0.00 0.00 3.41
929 930 8.384607 ACTAGATCCTCAAAAAGAAAACTCAC 57.615 34.615 0.00 0.00 0.00 3.51
930 931 8.214364 ACTAGATCCTCAAAAAGAAAACTCACT 58.786 33.333 0.00 0.00 0.00 3.41
931 932 7.269477 AGATCCTCAAAAAGAAAACTCACTG 57.731 36.000 0.00 0.00 0.00 3.66
932 933 5.248870 TCCTCAAAAAGAAAACTCACTGC 57.751 39.130 0.00 0.00 0.00 4.40
933 934 4.949856 TCCTCAAAAAGAAAACTCACTGCT 59.050 37.500 0.00 0.00 0.00 4.24
934 935 6.119536 TCCTCAAAAAGAAAACTCACTGCTA 58.880 36.000 0.00 0.00 0.00 3.49
935 936 6.038271 TCCTCAAAAAGAAAACTCACTGCTAC 59.962 38.462 0.00 0.00 0.00 3.58
936 937 6.183360 CCTCAAAAAGAAAACTCACTGCTACA 60.183 38.462 0.00 0.00 0.00 2.74
937 938 7.151999 TCAAAAAGAAAACTCACTGCTACAA 57.848 32.000 0.00 0.00 0.00 2.41
938 939 7.027161 TCAAAAAGAAAACTCACTGCTACAAC 58.973 34.615 0.00 0.00 0.00 3.32
939 940 6.759497 AAAAGAAAACTCACTGCTACAACT 57.241 33.333 0.00 0.00 0.00 3.16
940 941 5.993106 AAGAAAACTCACTGCTACAACTC 57.007 39.130 0.00 0.00 0.00 3.01
941 942 4.381411 AGAAAACTCACTGCTACAACTCC 58.619 43.478 0.00 0.00 0.00 3.85
942 943 2.440539 AACTCACTGCTACAACTCCG 57.559 50.000 0.00 0.00 0.00 4.63
943 944 0.038159 ACTCACTGCTACAACTCCGC 60.038 55.000 0.00 0.00 0.00 5.54
944 945 0.244994 CTCACTGCTACAACTCCGCT 59.755 55.000 0.00 0.00 0.00 5.52
945 946 0.679505 TCACTGCTACAACTCCGCTT 59.320 50.000 0.00 0.00 0.00 4.68
946 947 1.890489 TCACTGCTACAACTCCGCTTA 59.110 47.619 0.00 0.00 0.00 3.09
947 948 1.993370 CACTGCTACAACTCCGCTTAC 59.007 52.381 0.00 0.00 0.00 2.34
948 949 1.269166 CTGCTACAACTCCGCTTACG 58.731 55.000 0.00 0.00 39.67 3.18
949 950 0.734942 TGCTACAACTCCGCTTACGC 60.735 55.000 0.00 0.00 38.22 4.42
950 951 0.734942 GCTACAACTCCGCTTACGCA 60.735 55.000 0.00 0.00 38.22 5.24
951 952 1.705256 CTACAACTCCGCTTACGCAA 58.295 50.000 0.00 0.00 38.22 4.85
952 953 2.063266 CTACAACTCCGCTTACGCAAA 58.937 47.619 0.00 0.00 38.22 3.68
953 954 1.301423 ACAACTCCGCTTACGCAAAA 58.699 45.000 0.00 0.00 38.22 2.44
954 955 1.671845 ACAACTCCGCTTACGCAAAAA 59.328 42.857 0.00 0.00 38.22 1.94
1057 1072 0.841289 TTCCCAAACCCACGAGAGTT 59.159 50.000 0.00 0.00 46.40 3.01
1177 1207 2.990479 GTTCCCAGATCCACGCCT 59.010 61.111 0.00 0.00 0.00 5.52
1486 1546 1.388065 CCCTCCTCAGCGATTCGACT 61.388 60.000 10.88 3.72 0.00 4.18
1496 1580 0.729116 CGATTCGACTTTGGCAGCAT 59.271 50.000 0.00 0.00 0.00 3.79
1549 1648 4.099170 ACGGTCGCGTCCTTCTCG 62.099 66.667 19.89 8.87 0.00 4.04
1742 1850 2.350522 AGTGTTGATCTCCGATGTTGC 58.649 47.619 0.00 0.00 0.00 4.17
1814 1927 4.040217 GGAGTGATATCATCTCAACAGCCT 59.960 45.833 24.29 9.93 0.00 4.58
1826 1939 1.610522 CAACAGCCTTTCCACCTGAAG 59.389 52.381 0.00 0.00 33.63 3.02
1842 1955 6.294675 CCACCTGAAGCTTTTTGTGATGATAA 60.295 38.462 18.95 0.00 0.00 1.75
1880 1993 3.823873 TGGTAATGCACTTTACTGGTTGG 59.176 43.478 9.47 0.00 33.49 3.77
1883 1996 3.865700 GCACTTTACTGGTTGGTGC 57.134 52.632 0.00 0.00 44.53 5.01
1967 2086 2.290577 GGGCCTCCCATTACAGATGATC 60.291 54.545 0.84 0.00 44.65 2.92
2073 2201 6.672593 TGTGGCAGAGGATTATAAATTTCCT 58.327 36.000 5.91 5.91 42.58 3.36
2338 2466 2.165030 GCCAGGTGATTGTTCATCCTTG 59.835 50.000 0.00 0.00 33.08 3.61
2430 2612 6.074005 GCGATTCTCAAGTGTTCAAACTTAG 58.926 40.000 0.00 0.00 38.34 2.18
2447 2691 4.872664 ACTTAGAGCCATATTGCGTAGTC 58.127 43.478 0.00 0.00 36.02 2.59
2574 2840 8.803235 GGGAGGTAAGAAATCAAATAACAAGTT 58.197 33.333 0.00 0.00 0.00 2.66
2639 2906 3.005791 GCATGTTTTTAACCTCAGCTGGT 59.994 43.478 15.13 0.92 43.11 4.00
2782 3118 7.534723 AACCTTTTATTTAACCTGAAGACCC 57.465 36.000 0.00 0.00 0.00 4.46
2787 3123 7.754851 TTTATTTAACCTGAAGACCCAAGAC 57.245 36.000 0.00 0.00 0.00 3.01
2796 3132 5.045869 CCTGAAGACCCAAGACCACTTATTA 60.046 44.000 0.00 0.00 34.70 0.98
2828 3188 2.171003 TCGCTTCTTGACATCAGGAGA 58.829 47.619 0.00 0.00 33.43 3.71
2917 3279 5.297527 TGAGGTTGATATGCATACTGCTTTG 59.702 40.000 8.99 0.00 45.31 2.77
2979 3347 8.940397 TTATCTGGTATCATCATCAGTAGTGA 57.060 34.615 1.95 1.95 37.02 3.41
3194 3576 7.676004 TGACTGTCTGGTTTGATGTTCTAATA 58.324 34.615 9.51 0.00 0.00 0.98
3297 3683 1.557832 TCTAGTGGCCATTGTGGGTAC 59.442 52.381 9.72 0.00 38.19 3.34
3340 3726 4.251169 TCCTTTTGGCTATAGGGATGGAT 58.749 43.478 1.04 0.00 40.12 3.41
3564 4141 4.377022 GCCTTGTTCGTACACTGTTACATG 60.377 45.833 0.00 0.00 32.98 3.21
3751 4336 1.657822 GTGCCTTAGTCTAGCCAAGC 58.342 55.000 0.00 0.00 0.00 4.01
3756 4341 2.102252 CCTTAGTCTAGCCAAGCCTCTG 59.898 54.545 0.00 0.00 0.00 3.35
4023 4631 1.819288 TGTCCCGAGTGAGAATGAGTC 59.181 52.381 0.00 0.00 0.00 3.36
4035 4643 3.484407 AGAATGAGTCTTGCTTTGCTGT 58.516 40.909 0.00 0.00 29.66 4.40
4057 4669 7.201696 GCTGTAGCTTGTGCAATATTTACCTTA 60.202 37.037 0.00 0.00 42.74 2.69
4127 4739 2.439507 GGCTGAAGATATGGGACCTGAA 59.560 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.926555 GCATAGTAACTGCTATTAAAGAGTCCA 59.073 37.037 0.00 0.00 36.68 4.02
2 3 8.300495 GCATAGTAACTGCTATTAAAGAGTCC 57.700 38.462 0.00 0.00 36.68 3.85
15 16 4.697514 TCCTCATTGAGCATAGTAACTGC 58.302 43.478 8.23 0.00 39.97 4.40
16 17 5.069648 TCCTCCTCATTGAGCATAGTAACTG 59.930 44.000 8.23 0.00 0.00 3.16
17 18 5.211973 TCCTCCTCATTGAGCATAGTAACT 58.788 41.667 8.23 0.00 0.00 2.24
18 19 5.537300 TCCTCCTCATTGAGCATAGTAAC 57.463 43.478 8.23 0.00 0.00 2.50
19 20 6.438741 CCTATCCTCCTCATTGAGCATAGTAA 59.561 42.308 8.23 0.00 0.00 2.24
20 21 5.954752 CCTATCCTCCTCATTGAGCATAGTA 59.045 44.000 8.23 0.00 0.00 1.82
21 22 4.776837 CCTATCCTCCTCATTGAGCATAGT 59.223 45.833 8.23 0.00 0.00 2.12
22 23 4.161942 CCCTATCCTCCTCATTGAGCATAG 59.838 50.000 8.23 9.62 0.00 2.23
23 24 4.099633 CCCTATCCTCCTCATTGAGCATA 58.900 47.826 8.23 1.57 0.00 3.14
24 25 2.911636 CCCTATCCTCCTCATTGAGCAT 59.088 50.000 8.23 0.52 0.00 3.79
25 26 2.090550 TCCCTATCCTCCTCATTGAGCA 60.091 50.000 8.23 0.00 0.00 4.26
26 27 2.614259 TCCCTATCCTCCTCATTGAGC 58.386 52.381 8.23 0.00 0.00 4.26
27 28 5.836705 TCTATCCCTATCCTCCTCATTGAG 58.163 45.833 6.70 6.70 0.00 3.02
28 29 5.885677 TCTATCCCTATCCTCCTCATTGA 57.114 43.478 0.00 0.00 0.00 2.57
29 30 5.602145 GGATCTATCCCTATCCTCCTCATTG 59.398 48.000 0.00 0.00 41.20 2.82
30 31 5.259732 TGGATCTATCCCTATCCTCCTCATT 59.740 44.000 6.54 0.00 46.59 2.57
31 32 4.804034 TGGATCTATCCCTATCCTCCTCAT 59.196 45.833 6.54 0.00 46.59 2.90
32 33 4.195209 TGGATCTATCCCTATCCTCCTCA 58.805 47.826 6.54 0.00 46.59 3.86
33 34 4.890499 TGGATCTATCCCTATCCTCCTC 57.110 50.000 6.54 0.00 46.59 3.71
34 35 5.059802 AGATGGATCTATCCCTATCCTCCT 58.940 45.833 14.88 0.00 46.59 3.69
35 36 5.417170 AGATGGATCTATCCCTATCCTCC 57.583 47.826 14.88 0.00 46.59 4.30
36 37 6.407979 GCAAAGATGGATCTATCCCTATCCTC 60.408 46.154 14.88 0.00 46.59 3.71
37 38 5.428131 GCAAAGATGGATCTATCCCTATCCT 59.572 44.000 14.88 0.00 46.59 3.24
38 39 5.428131 AGCAAAGATGGATCTATCCCTATCC 59.572 44.000 14.88 0.00 46.59 2.59
39 40 6.558488 AGCAAAGATGGATCTATCCCTATC 57.442 41.667 14.88 4.25 46.59 2.08
40 41 6.069731 GGAAGCAAAGATGGATCTATCCCTAT 60.070 42.308 14.88 0.00 46.59 2.57
41 42 5.249393 GGAAGCAAAGATGGATCTATCCCTA 59.751 44.000 14.88 0.00 46.59 3.53
42 43 4.042684 GGAAGCAAAGATGGATCTATCCCT 59.957 45.833 14.88 4.75 46.59 4.20
43 44 4.042684 AGGAAGCAAAGATGGATCTATCCC 59.957 45.833 14.88 7.62 46.59 3.85
45 46 6.294473 TCAAGGAAGCAAAGATGGATCTATC 58.706 40.000 10.93 10.93 35.76 2.08
46 47 6.257994 TCAAGGAAGCAAAGATGGATCTAT 57.742 37.500 0.00 0.00 35.76 1.98
47 48 5.698741 TCAAGGAAGCAAAGATGGATCTA 57.301 39.130 0.00 0.00 35.76 1.98
48 49 4.581309 TCAAGGAAGCAAAGATGGATCT 57.419 40.909 0.00 0.00 39.22 2.75
49 50 4.499357 GCATCAAGGAAGCAAAGATGGATC 60.499 45.833 0.00 0.00 37.23 3.36
50 51 3.383825 GCATCAAGGAAGCAAAGATGGAT 59.616 43.478 0.00 0.00 37.23 3.41
51 52 2.756760 GCATCAAGGAAGCAAAGATGGA 59.243 45.455 0.00 0.00 37.23 3.41
52 53 2.479049 CGCATCAAGGAAGCAAAGATGG 60.479 50.000 0.00 0.00 37.23 3.51
53 54 2.479049 CCGCATCAAGGAAGCAAAGATG 60.479 50.000 0.00 0.00 39.17 2.90
54 55 1.747355 CCGCATCAAGGAAGCAAAGAT 59.253 47.619 0.00 0.00 0.00 2.40
55 56 1.167851 CCGCATCAAGGAAGCAAAGA 58.832 50.000 0.00 0.00 0.00 2.52
56 57 0.171903 CCCGCATCAAGGAAGCAAAG 59.828 55.000 0.00 0.00 0.00 2.77
57 58 0.251121 TCCCGCATCAAGGAAGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
58 59 0.677731 CTCCCGCATCAAGGAAGCAA 60.678 55.000 0.00 0.00 0.00 3.91
59 60 1.078214 CTCCCGCATCAAGGAAGCA 60.078 57.895 0.00 0.00 0.00 3.91
60 61 0.179034 ATCTCCCGCATCAAGGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
61 62 1.139654 TGATCTCCCGCATCAAGGAAG 59.860 52.381 0.00 0.00 0.00 3.46
62 63 1.203237 TGATCTCCCGCATCAAGGAA 58.797 50.000 0.00 0.00 0.00 3.36
63 64 1.203237 TTGATCTCCCGCATCAAGGA 58.797 50.000 0.00 0.00 35.71 3.36
64 65 3.786656 TTGATCTCCCGCATCAAGG 57.213 52.632 0.00 0.00 35.71 3.61
66 67 0.543277 AGCTTGATCTCCCGCATCAA 59.457 50.000 0.00 0.00 37.82 2.57
67 68 0.543277 AAGCTTGATCTCCCGCATCA 59.457 50.000 0.00 0.00 0.00 3.07
68 69 1.202627 AGAAGCTTGATCTCCCGCATC 60.203 52.381 2.10 0.00 0.00 3.91
69 70 0.835941 AGAAGCTTGATCTCCCGCAT 59.164 50.000 2.10 0.00 0.00 4.73
70 71 0.107993 CAGAAGCTTGATCTCCCGCA 60.108 55.000 2.10 0.00 0.00 5.69
71 72 0.107945 ACAGAAGCTTGATCTCCCGC 60.108 55.000 2.10 0.00 0.00 6.13
72 73 2.005451 CAACAGAAGCTTGATCTCCCG 58.995 52.381 2.10 0.00 0.00 5.14
73 74 3.269178 CTCAACAGAAGCTTGATCTCCC 58.731 50.000 2.10 0.00 0.00 4.30
74 75 3.932089 GACTCAACAGAAGCTTGATCTCC 59.068 47.826 2.10 0.00 0.00 3.71
75 76 4.819769 AGACTCAACAGAAGCTTGATCTC 58.180 43.478 2.10 0.00 0.00 2.75
76 77 4.888326 AGACTCAACAGAAGCTTGATCT 57.112 40.909 2.10 0.00 0.00 2.75
77 78 4.091220 CGAAGACTCAACAGAAGCTTGATC 59.909 45.833 2.10 0.00 0.00 2.92
78 79 3.993081 CGAAGACTCAACAGAAGCTTGAT 59.007 43.478 2.10 0.00 0.00 2.57
79 80 3.384668 CGAAGACTCAACAGAAGCTTGA 58.615 45.455 2.10 0.00 0.00 3.02
80 81 2.478134 CCGAAGACTCAACAGAAGCTTG 59.522 50.000 2.10 0.00 0.00 4.01
81 82 2.365617 TCCGAAGACTCAACAGAAGCTT 59.634 45.455 0.00 0.00 0.00 3.74
82 83 1.964223 TCCGAAGACTCAACAGAAGCT 59.036 47.619 0.00 0.00 0.00 3.74
83 84 2.062519 GTCCGAAGACTCAACAGAAGC 58.937 52.381 0.00 0.00 40.10 3.86
84 85 2.031069 TCGTCCGAAGACTCAACAGAAG 60.031 50.000 0.00 0.00 41.16 2.85
85 86 1.951602 TCGTCCGAAGACTCAACAGAA 59.048 47.619 0.00 0.00 41.16 3.02
86 87 1.266175 GTCGTCCGAAGACTCAACAGA 59.734 52.381 7.17 0.00 41.16 3.41
87 88 1.666311 GGTCGTCCGAAGACTCAACAG 60.666 57.143 13.23 0.00 41.16 3.16
88 89 0.313043 GGTCGTCCGAAGACTCAACA 59.687 55.000 13.23 0.00 41.16 3.33
89 90 0.597072 AGGTCGTCCGAAGACTCAAC 59.403 55.000 13.23 0.00 41.16 3.18
90 91 1.325355 AAGGTCGTCCGAAGACTCAA 58.675 50.000 13.23 0.00 41.16 3.02
91 92 1.000607 CAAAGGTCGTCCGAAGACTCA 60.001 52.381 13.23 0.00 41.16 3.41
92 93 1.000496 ACAAAGGTCGTCCGAAGACTC 60.000 52.381 13.23 5.03 41.16 3.36
93 94 1.038280 ACAAAGGTCGTCCGAAGACT 58.962 50.000 13.23 0.00 41.16 3.24
94 95 1.137513 CACAAAGGTCGTCCGAAGAC 58.862 55.000 5.95 5.95 39.83 3.01
95 96 0.748450 ACACAAAGGTCGTCCGAAGA 59.252 50.000 0.00 0.00 39.05 2.87
96 97 1.137513 GACACAAAGGTCGTCCGAAG 58.862 55.000 0.00 0.00 39.05 3.79
97 98 0.460722 TGACACAAAGGTCGTCCGAA 59.539 50.000 0.00 0.00 40.72 4.30
98 99 0.249155 GTGACACAAAGGTCGTCCGA 60.249 55.000 0.00 0.00 40.72 4.55
99 100 0.528901 TGTGACACAAAGGTCGTCCG 60.529 55.000 5.62 0.00 40.72 4.79
100 101 1.878953 ATGTGACACAAAGGTCGTCC 58.121 50.000 13.23 0.00 40.72 4.79
101 102 5.408604 AGAAATATGTGACACAAAGGTCGTC 59.591 40.000 13.23 4.41 40.72 4.20
102 103 5.305585 AGAAATATGTGACACAAAGGTCGT 58.694 37.500 13.23 0.00 40.72 4.34
103 104 5.444613 CGAGAAATATGTGACACAAAGGTCG 60.445 44.000 13.23 12.12 40.72 4.79
104 105 5.163854 CCGAGAAATATGTGACACAAAGGTC 60.164 44.000 13.23 8.28 38.29 3.85
105 106 4.695455 CCGAGAAATATGTGACACAAAGGT 59.305 41.667 13.23 0.00 0.00 3.50
106 107 4.094887 CCCGAGAAATATGTGACACAAAGG 59.905 45.833 13.23 7.10 0.00 3.11
107 108 4.935205 TCCCGAGAAATATGTGACACAAAG 59.065 41.667 13.23 0.00 0.00 2.77
108 109 4.693566 GTCCCGAGAAATATGTGACACAAA 59.306 41.667 13.23 0.00 0.00 2.83
109 110 4.250464 GTCCCGAGAAATATGTGACACAA 58.750 43.478 13.23 2.71 0.00 3.33
110 111 3.369052 GGTCCCGAGAAATATGTGACACA 60.369 47.826 11.41 11.41 0.00 3.72
111 112 3.195661 GGTCCCGAGAAATATGTGACAC 58.804 50.000 0.00 0.00 0.00 3.67
112 113 2.835156 TGGTCCCGAGAAATATGTGACA 59.165 45.455 0.00 0.00 0.00 3.58
113 114 3.132289 TCTGGTCCCGAGAAATATGTGAC 59.868 47.826 0.00 0.00 0.00 3.67
114 115 3.371034 TCTGGTCCCGAGAAATATGTGA 58.629 45.455 0.00 0.00 0.00 3.58
115 116 3.819564 TCTGGTCCCGAGAAATATGTG 57.180 47.619 0.00 0.00 0.00 3.21
116 117 5.373812 AATTCTGGTCCCGAGAAATATGT 57.626 39.130 0.00 0.00 33.22 2.29
117 118 6.095440 ACAAAATTCTGGTCCCGAGAAATATG 59.905 38.462 0.00 0.00 33.22 1.78
118 119 6.187682 ACAAAATTCTGGTCCCGAGAAATAT 58.812 36.000 0.00 0.00 33.22 1.28
119 120 5.566469 ACAAAATTCTGGTCCCGAGAAATA 58.434 37.500 0.00 0.00 33.22 1.40
120 121 4.407365 ACAAAATTCTGGTCCCGAGAAAT 58.593 39.130 0.00 0.00 33.22 2.17
121 122 3.818773 GACAAAATTCTGGTCCCGAGAAA 59.181 43.478 0.00 0.00 33.22 2.52
122 123 3.181449 TGACAAAATTCTGGTCCCGAGAA 60.181 43.478 0.00 0.00 34.00 2.87
123 124 2.370519 TGACAAAATTCTGGTCCCGAGA 59.629 45.455 0.00 0.00 0.00 4.04
124 125 2.744202 CTGACAAAATTCTGGTCCCGAG 59.256 50.000 0.00 0.00 0.00 4.63
125 126 2.105821 ACTGACAAAATTCTGGTCCCGA 59.894 45.455 0.00 0.00 0.00 5.14
126 127 2.226437 CACTGACAAAATTCTGGTCCCG 59.774 50.000 0.00 0.00 0.00 5.14
127 128 3.486383 TCACTGACAAAATTCTGGTCCC 58.514 45.455 0.00 0.00 0.00 4.46
128 129 5.712152 AATCACTGACAAAATTCTGGTCC 57.288 39.130 0.00 0.00 0.00 4.46
150 151 6.266558 TCTGTCCTAGCAAATTTAGCCAAAAA 59.733 34.615 8.41 0.00 0.00 1.94
151 152 5.772672 TCTGTCCTAGCAAATTTAGCCAAAA 59.227 36.000 8.41 0.00 0.00 2.44
152 153 5.321102 TCTGTCCTAGCAAATTTAGCCAAA 58.679 37.500 8.41 0.00 0.00 3.28
153 154 4.917385 TCTGTCCTAGCAAATTTAGCCAA 58.083 39.130 8.41 0.00 0.00 4.52
154 155 4.568072 TCTGTCCTAGCAAATTTAGCCA 57.432 40.909 8.41 0.00 0.00 4.75
155 156 5.416013 ACTTTCTGTCCTAGCAAATTTAGCC 59.584 40.000 8.41 0.00 0.00 3.93
156 157 6.502136 ACTTTCTGTCCTAGCAAATTTAGC 57.498 37.500 0.00 0.00 0.00 3.09
157 158 9.436957 TTCTACTTTCTGTCCTAGCAAATTTAG 57.563 33.333 0.00 0.00 0.00 1.85
158 159 9.216117 GTTCTACTTTCTGTCCTAGCAAATTTA 57.784 33.333 0.00 0.00 0.00 1.40
159 160 7.939588 AGTTCTACTTTCTGTCCTAGCAAATTT 59.060 33.333 0.00 0.00 0.00 1.82
160 161 7.454225 AGTTCTACTTTCTGTCCTAGCAAATT 58.546 34.615 0.00 0.00 0.00 1.82
161 162 7.010339 AGTTCTACTTTCTGTCCTAGCAAAT 57.990 36.000 0.00 0.00 0.00 2.32
162 163 6.420913 AGTTCTACTTTCTGTCCTAGCAAA 57.579 37.500 0.00 0.00 0.00 3.68
163 164 7.719871 ATAGTTCTACTTTCTGTCCTAGCAA 57.280 36.000 0.00 0.00 0.00 3.91
164 165 8.053963 ACTATAGTTCTACTTTCTGTCCTAGCA 58.946 37.037 0.00 0.00 0.00 3.49
165 166 8.454570 ACTATAGTTCTACTTTCTGTCCTAGC 57.545 38.462 0.00 0.00 0.00 3.42
168 169 8.532819 CCAAACTATAGTTCTACTTTCTGTCCT 58.467 37.037 18.28 0.00 37.25 3.85
169 170 8.312564 ACCAAACTATAGTTCTACTTTCTGTCC 58.687 37.037 18.28 0.00 37.25 4.02
170 171 9.708092 AACCAAACTATAGTTCTACTTTCTGTC 57.292 33.333 18.28 0.00 37.25 3.51
189 190 4.097286 TGACAAGCCAGAGTTTAACCAAAC 59.903 41.667 0.00 0.00 43.71 2.93
190 191 4.274147 TGACAAGCCAGAGTTTAACCAAA 58.726 39.130 0.00 0.00 0.00 3.28
191 192 3.882888 CTGACAAGCCAGAGTTTAACCAA 59.117 43.478 0.00 0.00 36.29 3.67
192 193 3.135712 TCTGACAAGCCAGAGTTTAACCA 59.864 43.478 0.00 0.00 38.18 3.67
193 194 3.740115 TCTGACAAGCCAGAGTTTAACC 58.260 45.455 0.00 0.00 38.18 2.85
201 202 2.171840 GAGTACCTCTGACAAGCCAGA 58.828 52.381 0.00 0.00 40.57 3.86
202 203 1.135257 CGAGTACCTCTGACAAGCCAG 60.135 57.143 0.00 0.00 35.55 4.85
203 204 0.888619 CGAGTACCTCTGACAAGCCA 59.111 55.000 0.00 0.00 0.00 4.75
204 205 1.174783 TCGAGTACCTCTGACAAGCC 58.825 55.000 0.00 0.00 0.00 4.35
205 206 2.685897 AGATCGAGTACCTCTGACAAGC 59.314 50.000 0.00 0.00 0.00 4.01
206 207 4.974368 AAGATCGAGTACCTCTGACAAG 57.026 45.455 0.00 0.00 0.00 3.16
207 208 4.523173 ACAAAGATCGAGTACCTCTGACAA 59.477 41.667 0.00 0.00 0.00 3.18
208 209 4.079970 ACAAAGATCGAGTACCTCTGACA 58.920 43.478 0.00 0.00 0.00 3.58
209 210 4.705337 ACAAAGATCGAGTACCTCTGAC 57.295 45.455 0.00 0.00 0.00 3.51
210 211 6.680625 GCAATACAAAGATCGAGTACCTCTGA 60.681 42.308 0.00 0.00 0.00 3.27
211 212 5.460419 GCAATACAAAGATCGAGTACCTCTG 59.540 44.000 0.00 0.00 0.00 3.35
212 213 5.127194 TGCAATACAAAGATCGAGTACCTCT 59.873 40.000 0.00 0.00 0.00 3.69
213 214 5.348986 TGCAATACAAAGATCGAGTACCTC 58.651 41.667 0.00 0.00 0.00 3.85
214 215 5.127194 TCTGCAATACAAAGATCGAGTACCT 59.873 40.000 0.00 0.00 0.00 3.08
215 216 5.232414 GTCTGCAATACAAAGATCGAGTACC 59.768 44.000 0.00 0.00 0.00 3.34
216 217 6.020281 CAGTCTGCAATACAAAGATCGAGTAC 60.020 42.308 0.00 0.00 0.00 2.73
217 218 6.036470 CAGTCTGCAATACAAAGATCGAGTA 58.964 40.000 0.00 0.00 0.00 2.59
218 219 4.867047 CAGTCTGCAATACAAAGATCGAGT 59.133 41.667 0.00 0.00 0.00 4.18
219 220 4.867047 ACAGTCTGCAATACAAAGATCGAG 59.133 41.667 0.00 0.00 0.00 4.04
220 221 4.627035 CACAGTCTGCAATACAAAGATCGA 59.373 41.667 0.00 0.00 0.00 3.59
221 222 4.201753 CCACAGTCTGCAATACAAAGATCG 60.202 45.833 0.00 0.00 0.00 3.69
222 223 4.697352 ACCACAGTCTGCAATACAAAGATC 59.303 41.667 0.00 0.00 0.00 2.75
223 224 4.456911 CACCACAGTCTGCAATACAAAGAT 59.543 41.667 0.00 0.00 0.00 2.40
224 225 3.814842 CACCACAGTCTGCAATACAAAGA 59.185 43.478 0.00 0.00 0.00 2.52
225 226 3.814842 TCACCACAGTCTGCAATACAAAG 59.185 43.478 0.00 0.00 0.00 2.77
226 227 3.814625 TCACCACAGTCTGCAATACAAA 58.185 40.909 0.00 0.00 0.00 2.83
227 228 3.483808 TCACCACAGTCTGCAATACAA 57.516 42.857 0.00 0.00 0.00 2.41
228 229 3.701205 ATCACCACAGTCTGCAATACA 57.299 42.857 0.00 0.00 0.00 2.29
229 230 4.093998 CAGAATCACCACAGTCTGCAATAC 59.906 45.833 0.00 0.00 31.80 1.89
230 231 4.256110 CAGAATCACCACAGTCTGCAATA 58.744 43.478 0.00 0.00 31.80 1.90
231 232 3.079578 CAGAATCACCACAGTCTGCAAT 58.920 45.455 0.00 0.00 31.80 3.56
232 233 2.497138 CAGAATCACCACAGTCTGCAA 58.503 47.619 0.00 0.00 31.80 4.08
233 234 2.174363 CAGAATCACCACAGTCTGCA 57.826 50.000 0.00 0.00 31.80 4.41
235 236 1.271001 TGGCAGAATCACCACAGTCTG 60.271 52.381 0.00 0.00 40.40 3.51
236 237 1.059098 TGGCAGAATCACCACAGTCT 58.941 50.000 0.00 0.00 0.00 3.24
237 238 2.119801 ATGGCAGAATCACCACAGTC 57.880 50.000 0.00 0.00 39.19 3.51
238 239 2.559668 CAAATGGCAGAATCACCACAGT 59.440 45.455 0.00 0.00 39.19 3.55
239 240 2.821378 TCAAATGGCAGAATCACCACAG 59.179 45.455 0.00 0.00 39.19 3.66
240 241 2.821378 CTCAAATGGCAGAATCACCACA 59.179 45.455 0.00 0.00 39.19 4.17
241 242 2.821969 ACTCAAATGGCAGAATCACCAC 59.178 45.455 0.00 0.00 39.19 4.16
242 243 3.159213 ACTCAAATGGCAGAATCACCA 57.841 42.857 0.00 0.00 41.06 4.17
243 244 5.841957 ATTACTCAAATGGCAGAATCACC 57.158 39.130 0.00 0.00 0.00 4.02
244 245 7.320443 TGTATTACTCAAATGGCAGAATCAC 57.680 36.000 0.00 0.00 0.00 3.06
245 246 8.523915 AATGTATTACTCAAATGGCAGAATCA 57.476 30.769 0.00 0.00 0.00 2.57
246 247 9.807649 AAAATGTATTACTCAAATGGCAGAATC 57.192 29.630 0.00 0.00 0.00 2.52
248 249 9.638239 GAAAAATGTATTACTCAAATGGCAGAA 57.362 29.630 0.00 0.00 0.00 3.02
249 250 8.801299 TGAAAAATGTATTACTCAAATGGCAGA 58.199 29.630 0.00 0.00 0.00 4.26
250 251 8.984891 TGAAAAATGTATTACTCAAATGGCAG 57.015 30.769 0.00 0.00 0.00 4.85
251 252 9.202273 GTTGAAAAATGTATTACTCAAATGGCA 57.798 29.630 0.00 0.00 0.00 4.92
252 253 8.655970 GGTTGAAAAATGTATTACTCAAATGGC 58.344 33.333 0.00 0.00 0.00 4.40
253 254 8.859156 CGGTTGAAAAATGTATTACTCAAATGG 58.141 33.333 0.00 0.00 0.00 3.16
254 255 8.372521 GCGGTTGAAAAATGTATTACTCAAATG 58.627 33.333 0.00 0.00 0.00 2.32
255 256 8.085296 TGCGGTTGAAAAATGTATTACTCAAAT 58.915 29.630 0.00 0.00 0.00 2.32
256 257 7.426410 TGCGGTTGAAAAATGTATTACTCAAA 58.574 30.769 0.00 0.00 0.00 2.69
257 258 6.971602 TGCGGTTGAAAAATGTATTACTCAA 58.028 32.000 0.00 0.00 0.00 3.02
258 259 6.561737 TGCGGTTGAAAAATGTATTACTCA 57.438 33.333 0.00 0.00 0.00 3.41
259 260 7.861176 TTTGCGGTTGAAAAATGTATTACTC 57.139 32.000 0.00 0.00 0.00 2.59
260 261 8.649973 TTTTTGCGGTTGAAAAATGTATTACT 57.350 26.923 0.00 0.00 32.62 2.24
284 285 5.927281 ATAGAGTCATGGCTTGCATTTTT 57.073 34.783 0.00 0.00 0.00 1.94
285 286 5.419788 TGAATAGAGTCATGGCTTGCATTTT 59.580 36.000 0.00 0.00 0.00 1.82
286 287 4.951715 TGAATAGAGTCATGGCTTGCATTT 59.048 37.500 0.00 0.00 0.00 2.32
287 288 4.337555 GTGAATAGAGTCATGGCTTGCATT 59.662 41.667 0.00 1.35 0.00 3.56
288 289 3.881688 GTGAATAGAGTCATGGCTTGCAT 59.118 43.478 0.00 0.00 0.00 3.96
289 290 3.273434 GTGAATAGAGTCATGGCTTGCA 58.727 45.455 0.00 0.00 0.00 4.08
290 291 2.286294 CGTGAATAGAGTCATGGCTTGC 59.714 50.000 0.00 0.00 31.92 4.01
291 292 3.525537 ACGTGAATAGAGTCATGGCTTG 58.474 45.455 0.00 0.00 38.61 4.01
292 293 3.895232 ACGTGAATAGAGTCATGGCTT 57.105 42.857 0.00 0.00 38.61 4.35
293 294 3.243569 GCTACGTGAATAGAGTCATGGCT 60.244 47.826 0.00 0.00 38.61 4.75
294 295 3.053455 GCTACGTGAATAGAGTCATGGC 58.947 50.000 0.00 0.00 38.61 4.40
295 296 4.307443 TGCTACGTGAATAGAGTCATGG 57.693 45.455 0.00 0.00 38.61 3.66
296 297 5.004821 GTGTTGCTACGTGAATAGAGTCATG 59.995 44.000 0.00 0.00 39.90 3.07
297 298 5.103000 GTGTTGCTACGTGAATAGAGTCAT 58.897 41.667 0.00 0.00 0.00 3.06
298 299 4.022676 TGTGTTGCTACGTGAATAGAGTCA 60.023 41.667 0.00 0.00 0.00 3.41
299 300 4.482386 TGTGTTGCTACGTGAATAGAGTC 58.518 43.478 0.00 0.00 0.00 3.36
300 301 4.514781 TGTGTTGCTACGTGAATAGAGT 57.485 40.909 0.00 0.00 0.00 3.24
301 302 4.268644 CCATGTGTTGCTACGTGAATAGAG 59.731 45.833 0.00 0.00 39.39 2.43
302 303 4.180817 CCATGTGTTGCTACGTGAATAGA 58.819 43.478 0.00 0.00 39.39 1.98
303 304 3.932710 ACCATGTGTTGCTACGTGAATAG 59.067 43.478 0.00 0.00 39.39 1.73
304 305 3.930229 GACCATGTGTTGCTACGTGAATA 59.070 43.478 0.00 0.00 39.39 1.75
305 306 2.742053 GACCATGTGTTGCTACGTGAAT 59.258 45.455 0.00 0.03 39.39 2.57
306 307 2.139917 GACCATGTGTTGCTACGTGAA 58.860 47.619 0.00 0.00 39.39 3.18
307 308 1.069358 TGACCATGTGTTGCTACGTGA 59.931 47.619 0.00 0.00 39.39 4.35
308 309 1.507562 TGACCATGTGTTGCTACGTG 58.492 50.000 0.00 0.00 37.33 4.49
309 310 2.472695 ATGACCATGTGTTGCTACGT 57.527 45.000 0.00 0.00 0.00 3.57
310 311 2.741517 TGAATGACCATGTGTTGCTACG 59.258 45.455 0.00 0.00 0.00 3.51
311 312 4.216257 AGTTGAATGACCATGTGTTGCTAC 59.784 41.667 0.00 0.00 0.00 3.58
312 313 4.397420 AGTTGAATGACCATGTGTTGCTA 58.603 39.130 0.00 0.00 0.00 3.49
313 314 3.225104 AGTTGAATGACCATGTGTTGCT 58.775 40.909 0.00 0.00 0.00 3.91
314 315 3.648339 AGTTGAATGACCATGTGTTGC 57.352 42.857 0.00 0.00 0.00 4.17
315 316 5.702670 AGACTAGTTGAATGACCATGTGTTG 59.297 40.000 0.00 0.00 0.00 3.33
316 317 5.869579 AGACTAGTTGAATGACCATGTGTT 58.130 37.500 0.00 0.00 0.00 3.32
317 318 5.489792 AGACTAGTTGAATGACCATGTGT 57.510 39.130 0.00 0.00 0.00 3.72
318 319 6.205464 ACAAAGACTAGTTGAATGACCATGTG 59.795 38.462 0.00 0.00 0.00 3.21
319 320 6.299141 ACAAAGACTAGTTGAATGACCATGT 58.701 36.000 0.00 0.00 0.00 3.21
320 321 6.808008 ACAAAGACTAGTTGAATGACCATG 57.192 37.500 0.00 0.00 0.00 3.66
321 322 6.595716 GCTACAAAGACTAGTTGAATGACCAT 59.404 38.462 0.00 0.00 0.00 3.55
322 323 5.932303 GCTACAAAGACTAGTTGAATGACCA 59.068 40.000 0.00 0.00 0.00 4.02
323 324 5.351740 GGCTACAAAGACTAGTTGAATGACC 59.648 44.000 0.00 0.00 0.00 4.02
324 325 5.932303 TGGCTACAAAGACTAGTTGAATGAC 59.068 40.000 0.00 0.00 0.00 3.06
325 326 6.109156 TGGCTACAAAGACTAGTTGAATGA 57.891 37.500 0.00 0.00 0.00 2.57
326 327 5.934625 ACTGGCTACAAAGACTAGTTGAATG 59.065 40.000 0.00 0.00 0.00 2.67
327 328 6.115448 ACTGGCTACAAAGACTAGTTGAAT 57.885 37.500 0.00 0.00 0.00 2.57
328 329 5.546621 ACTGGCTACAAAGACTAGTTGAA 57.453 39.130 0.00 0.00 0.00 2.69
329 330 5.546621 AACTGGCTACAAAGACTAGTTGA 57.453 39.130 0.00 0.00 33.05 3.18
330 331 7.724305 TTAAACTGGCTACAAAGACTAGTTG 57.276 36.000 0.00 0.00 33.87 3.16
331 332 8.618677 GTTTTAAACTGGCTACAAAGACTAGTT 58.381 33.333 0.00 0.00 34.49 2.24
332 333 7.228108 GGTTTTAAACTGGCTACAAAGACTAGT 59.772 37.037 7.79 0.00 0.00 2.57
333 334 7.227910 TGGTTTTAAACTGGCTACAAAGACTAG 59.772 37.037 7.79 0.00 0.00 2.57
334 335 7.055378 TGGTTTTAAACTGGCTACAAAGACTA 58.945 34.615 7.79 0.00 0.00 2.59
335 336 5.889289 TGGTTTTAAACTGGCTACAAAGACT 59.111 36.000 7.79 0.00 0.00 3.24
336 337 6.139048 TGGTTTTAAACTGGCTACAAAGAC 57.861 37.500 7.79 0.00 0.00 3.01
337 338 6.322712 ACATGGTTTTAAACTGGCTACAAAGA 59.677 34.615 7.79 0.00 0.00 2.52
338 339 6.512297 ACATGGTTTTAAACTGGCTACAAAG 58.488 36.000 7.79 0.00 0.00 2.77
339 340 6.322712 AGACATGGTTTTAAACTGGCTACAAA 59.677 34.615 7.79 0.00 0.00 2.83
340 341 5.830991 AGACATGGTTTTAAACTGGCTACAA 59.169 36.000 7.79 0.00 0.00 2.41
341 342 5.381757 AGACATGGTTTTAAACTGGCTACA 58.618 37.500 7.79 0.00 0.00 2.74
342 343 5.959618 AGACATGGTTTTAAACTGGCTAC 57.040 39.130 7.79 0.00 0.00 3.58
343 344 6.065374 TCAAGACATGGTTTTAAACTGGCTA 58.935 36.000 7.79 0.00 26.15 3.93
344 345 4.892934 TCAAGACATGGTTTTAAACTGGCT 59.107 37.500 7.79 3.85 0.00 4.75
345 346 5.195001 TCAAGACATGGTTTTAAACTGGC 57.805 39.130 7.79 1.48 0.00 4.85
346 347 7.710475 ACATTTCAAGACATGGTTTTAAACTGG 59.290 33.333 7.79 0.88 0.00 4.00
347 348 8.647143 ACATTTCAAGACATGGTTTTAAACTG 57.353 30.769 7.79 1.99 0.00 3.16
352 353 8.739039 CCTCATACATTTCAAGACATGGTTTTA 58.261 33.333 0.00 0.00 0.00 1.52
353 354 7.451255 TCCTCATACATTTCAAGACATGGTTTT 59.549 33.333 0.00 0.00 0.00 2.43
354 355 6.947733 TCCTCATACATTTCAAGACATGGTTT 59.052 34.615 0.00 0.00 0.00 3.27
355 356 6.484288 TCCTCATACATTTCAAGACATGGTT 58.516 36.000 0.00 0.00 0.00 3.67
356 357 6.065976 TCCTCATACATTTCAAGACATGGT 57.934 37.500 0.00 0.00 0.00 3.55
357 358 7.121759 AGTTTCCTCATACATTTCAAGACATGG 59.878 37.037 0.00 0.00 0.00 3.66
358 359 7.966753 CAGTTTCCTCATACATTTCAAGACATG 59.033 37.037 0.00 0.00 0.00 3.21
359 360 7.884877 TCAGTTTCCTCATACATTTCAAGACAT 59.115 33.333 0.00 0.00 0.00 3.06
360 361 7.223584 TCAGTTTCCTCATACATTTCAAGACA 58.776 34.615 0.00 0.00 0.00 3.41
361 362 7.672983 TCAGTTTCCTCATACATTTCAAGAC 57.327 36.000 0.00 0.00 0.00 3.01
362 363 8.868522 ATTCAGTTTCCTCATACATTTCAAGA 57.131 30.769 0.00 0.00 0.00 3.02
790 791 4.141287 CGTAATGGGGGCATAAATCTCAA 58.859 43.478 0.00 0.00 0.00 3.02
791 792 3.750371 CGTAATGGGGGCATAAATCTCA 58.250 45.455 0.00 0.00 0.00 3.27
792 793 2.488153 GCGTAATGGGGGCATAAATCTC 59.512 50.000 0.00 0.00 0.00 2.75
793 794 2.158534 TGCGTAATGGGGGCATAAATCT 60.159 45.455 0.00 0.00 0.00 2.40
794 795 2.228822 CTGCGTAATGGGGGCATAAATC 59.771 50.000 0.00 0.00 35.91 2.17
795 796 2.158534 TCTGCGTAATGGGGGCATAAAT 60.159 45.455 0.00 0.00 35.91 1.40
796 797 1.213182 TCTGCGTAATGGGGGCATAAA 59.787 47.619 0.00 0.00 35.91 1.40
797 798 0.840617 TCTGCGTAATGGGGGCATAA 59.159 50.000 0.00 0.00 35.91 1.90
798 799 1.064003 ATCTGCGTAATGGGGGCATA 58.936 50.000 0.00 0.00 35.91 3.14
799 800 0.538057 CATCTGCGTAATGGGGGCAT 60.538 55.000 0.00 0.00 35.91 4.40
800 801 1.152984 CATCTGCGTAATGGGGGCA 60.153 57.895 0.00 0.00 35.07 5.36
801 802 2.555547 GCATCTGCGTAATGGGGGC 61.556 63.158 0.00 0.00 0.00 5.80
802 803 1.152984 TGCATCTGCGTAATGGGGG 60.153 57.895 0.00 0.00 45.83 5.40
803 804 1.168407 CCTGCATCTGCGTAATGGGG 61.168 60.000 0.00 0.00 45.83 4.96
804 805 1.789078 GCCTGCATCTGCGTAATGGG 61.789 60.000 0.00 0.00 45.83 4.00
805 806 1.650912 GCCTGCATCTGCGTAATGG 59.349 57.895 0.00 0.00 45.83 3.16
806 807 1.277739 CGCCTGCATCTGCGTAATG 59.722 57.895 14.90 0.00 45.43 1.90
807 808 3.723172 CGCCTGCATCTGCGTAAT 58.277 55.556 14.90 0.00 45.43 1.89
812 813 3.260483 CTCGACGCCTGCATCTGC 61.260 66.667 0.00 0.00 42.50 4.26
813 814 2.163390 CACTCGACGCCTGCATCTG 61.163 63.158 0.00 0.00 0.00 2.90
814 815 2.182791 CACTCGACGCCTGCATCT 59.817 61.111 0.00 0.00 0.00 2.90
815 816 1.875813 CTCACTCGACGCCTGCATC 60.876 63.158 0.00 0.00 0.00 3.91
816 817 2.182791 CTCACTCGACGCCTGCAT 59.817 61.111 0.00 0.00 0.00 3.96
817 818 4.724602 GCTCACTCGACGCCTGCA 62.725 66.667 0.00 0.00 0.00 4.41
835 836 3.261677 TAGTGGTGTTGGGCCCCC 61.262 66.667 22.27 14.24 0.00 5.40
851 852 1.771854 TGGGCCTTCACTGACAAAGTA 59.228 47.619 4.53 0.00 36.83 2.24
857 858 1.968540 GCACTGGGCCTTCACTGAC 60.969 63.158 4.53 0.00 36.11 3.51
901 902 8.753497 AGTTTTCTTTTTGAGGATCTAGTTGT 57.247 30.769 0.00 0.00 34.92 3.32
903 904 8.841300 GTGAGTTTTCTTTTTGAGGATCTAGTT 58.159 33.333 0.00 0.00 34.92 2.24
907 908 6.238869 GCAGTGAGTTTTCTTTTTGAGGATCT 60.239 38.462 0.00 0.00 34.92 2.75
908 909 5.917447 GCAGTGAGTTTTCTTTTTGAGGATC 59.083 40.000 0.00 0.00 0.00 3.36
909 910 5.595952 AGCAGTGAGTTTTCTTTTTGAGGAT 59.404 36.000 0.00 0.00 0.00 3.24
910 911 4.949856 AGCAGTGAGTTTTCTTTTTGAGGA 59.050 37.500 0.00 0.00 0.00 3.71
911 912 5.254339 AGCAGTGAGTTTTCTTTTTGAGG 57.746 39.130 0.00 0.00 0.00 3.86
912 913 6.785191 TGTAGCAGTGAGTTTTCTTTTTGAG 58.215 36.000 0.00 0.00 0.00 3.02
913 914 6.751514 TGTAGCAGTGAGTTTTCTTTTTGA 57.248 33.333 0.00 0.00 0.00 2.69
915 916 7.158099 AGTTGTAGCAGTGAGTTTTCTTTTT 57.842 32.000 0.00 0.00 0.00 1.94
916 917 6.183360 GGAGTTGTAGCAGTGAGTTTTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
917 918 5.297029 GGAGTTGTAGCAGTGAGTTTTCTTT 59.703 40.000 0.00 0.00 0.00 2.52
918 919 4.816925 GGAGTTGTAGCAGTGAGTTTTCTT 59.183 41.667 0.00 0.00 0.00 2.52
919 920 4.381411 GGAGTTGTAGCAGTGAGTTTTCT 58.619 43.478 0.00 0.00 0.00 2.52
920 921 3.184581 CGGAGTTGTAGCAGTGAGTTTTC 59.815 47.826 0.00 0.00 0.00 2.29
921 922 3.131396 CGGAGTTGTAGCAGTGAGTTTT 58.869 45.455 0.00 0.00 0.00 2.43
922 923 2.755650 CGGAGTTGTAGCAGTGAGTTT 58.244 47.619 0.00 0.00 0.00 2.66
923 924 1.605712 GCGGAGTTGTAGCAGTGAGTT 60.606 52.381 0.00 0.00 0.00 3.01
924 925 0.038159 GCGGAGTTGTAGCAGTGAGT 60.038 55.000 0.00 0.00 0.00 3.41
925 926 0.244994 AGCGGAGTTGTAGCAGTGAG 59.755 55.000 0.00 0.00 0.00 3.51
926 927 0.679505 AAGCGGAGTTGTAGCAGTGA 59.320 50.000 0.00 0.00 0.00 3.41
927 928 1.993370 GTAAGCGGAGTTGTAGCAGTG 59.007 52.381 0.00 0.00 0.00 3.66
928 929 1.402456 CGTAAGCGGAGTTGTAGCAGT 60.402 52.381 0.00 0.00 0.00 4.40
929 930 1.269166 CGTAAGCGGAGTTGTAGCAG 58.731 55.000 0.00 0.00 0.00 4.24
930 931 3.411808 CGTAAGCGGAGTTGTAGCA 57.588 52.632 0.00 0.00 0.00 3.49
962 963 2.111384 CCTTAGCTAGCTCCAACTGGA 58.889 52.381 23.26 0.00 43.08 3.86
963 964 1.834263 ACCTTAGCTAGCTCCAACTGG 59.166 52.381 23.26 16.45 0.00 4.00
964 965 2.763448 AGACCTTAGCTAGCTCCAACTG 59.237 50.000 23.26 7.72 0.00 3.16
965 966 3.108847 AGACCTTAGCTAGCTCCAACT 57.891 47.619 23.26 12.44 0.00 3.16
966 967 3.897141 AAGACCTTAGCTAGCTCCAAC 57.103 47.619 23.26 10.33 0.00 3.77
967 968 3.838317 TGAAAGACCTTAGCTAGCTCCAA 59.162 43.478 23.26 10.33 0.00 3.53
968 969 3.195825 GTGAAAGACCTTAGCTAGCTCCA 59.804 47.826 23.26 8.53 0.00 3.86
969 970 3.735514 CGTGAAAGACCTTAGCTAGCTCC 60.736 52.174 23.26 6.70 0.00 4.70
970 971 3.440228 CGTGAAAGACCTTAGCTAGCTC 58.560 50.000 23.26 6.66 0.00 4.09
971 972 2.417515 GCGTGAAAGACCTTAGCTAGCT 60.418 50.000 23.12 23.12 0.00 3.32
972 973 1.927838 GCGTGAAAGACCTTAGCTAGC 59.072 52.381 6.62 6.62 0.00 3.42
973 974 2.541556 GGCGTGAAAGACCTTAGCTAG 58.458 52.381 0.00 0.00 0.00 3.42
974 975 1.135199 CGGCGTGAAAGACCTTAGCTA 60.135 52.381 0.00 0.00 0.00 3.32
975 976 0.389948 CGGCGTGAAAGACCTTAGCT 60.390 55.000 0.00 0.00 0.00 3.32
976 977 1.967597 GCGGCGTGAAAGACCTTAGC 61.968 60.000 9.37 0.00 0.00 3.09
977 978 1.359459 GGCGGCGTGAAAGACCTTAG 61.359 60.000 9.37 0.00 0.00 2.18
978 979 1.375013 GGCGGCGTGAAAGACCTTA 60.375 57.895 9.37 0.00 0.00 2.69
979 980 2.668550 GGCGGCGTGAAAGACCTT 60.669 61.111 9.37 0.00 0.00 3.50
987 988 2.281831 TTCATTTGGGCGGCGTGA 60.282 55.556 9.37 0.00 0.00 4.35
1057 1072 2.044555 CCACTCCGTCTGCCTCGTA 61.045 63.158 0.00 0.00 0.00 3.43
1094 1124 3.893763 CCTCCTCGCTCGCGTGAT 61.894 66.667 13.13 0.00 40.74 3.06
1486 1546 1.675310 CCTCCGTGATGCTGCCAAA 60.675 57.895 0.00 0.00 0.00 3.28
1549 1648 1.810030 GATCCCGCTCCACGTCAAC 60.810 63.158 0.00 0.00 41.42 3.18
1742 1850 4.098654 ACACCAAGAGTCGATTATCCTCTG 59.901 45.833 3.51 0.00 35.79 3.35
1814 1927 3.766591 TCACAAAAAGCTTCAGGTGGAAA 59.233 39.130 18.47 3.54 34.44 3.13
1826 1939 4.381932 CCCAGGGTTATCATCACAAAAAGC 60.382 45.833 0.00 0.00 0.00 3.51
1842 1955 1.077265 CCAACAAGCATCCCAGGGT 59.923 57.895 5.01 0.00 0.00 4.34
1880 1993 8.703604 AGTATGTCATCGGTTATATAATGCAC 57.296 34.615 0.00 0.00 0.00 4.57
1887 2000 9.261180 CAAACTCAAGTATGTCATCGGTTATAT 57.739 33.333 0.00 0.00 0.00 0.86
1967 2086 4.889112 ATGGCTGGCATGGCGGAG 62.889 66.667 30.77 16.62 35.06 4.63
2338 2466 5.675538 AGTTACTCCTGCAATATGAGGAAC 58.324 41.667 16.69 16.69 46.01 3.62
2430 2612 3.653344 TGATGACTACGCAATATGGCTC 58.347 45.455 0.00 0.00 0.00 4.70
2779 3115 5.968167 TCTACCATAATAAGTGGTCTTGGGT 59.032 40.000 0.36 0.00 46.79 4.51
2782 3118 9.449719 AAAACTCTACCATAATAAGTGGTCTTG 57.550 33.333 0.36 0.00 46.79 3.02
2787 3123 6.761714 AGCGAAAACTCTACCATAATAAGTGG 59.238 38.462 0.00 0.00 42.55 4.00
2796 3132 4.691216 GTCAAGAAGCGAAAACTCTACCAT 59.309 41.667 0.00 0.00 0.00 3.55
2917 3279 5.768333 GCATTTTGCAAGGAATACTGTTC 57.232 39.130 0.00 0.00 44.26 3.18
2964 3332 8.695456 TGTTTATAGCTTCACTACTGATGATGA 58.305 33.333 0.00 0.00 32.32 2.92
3297 3683 0.896940 AGCAGTTTGAGGGTGCATGG 60.897 55.000 0.00 0.00 39.80 3.66
3564 4141 4.409187 ACCTAATAGTAGCACCTAGGAGC 58.591 47.826 22.31 22.31 34.43 4.70
4023 4631 2.658285 CACAAGCTACAGCAAAGCAAG 58.342 47.619 3.70 2.54 45.16 4.01
4057 4669 4.345257 ACTCTGGCTCGTATGAACCATTAT 59.655 41.667 7.53 0.00 39.56 1.28
4127 4739 6.779860 ACTATGGTTTCAAGTATGGTTGTCT 58.220 36.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.