Multiple sequence alignment - TraesCS1D01G281900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G281900 chr1D 100.000 2757 0 0 905 3661 379580356 379583112 0.000000e+00 5092
1 TraesCS1D01G281900 chr1D 100.000 422 0 0 1 422 379579452 379579873 0.000000e+00 780
2 TraesCS1D01G281900 chr1D 98.630 146 1 1 1 146 254397201 254397345 1.300000e-64 257
3 TraesCS1D01G281900 chr1D 89.571 163 16 1 2833 2994 46634615 46634453 4.790000e-49 206
4 TraesCS1D01G281900 chr1B 92.776 1938 105 20 910 2831 509000844 509002762 0.000000e+00 2771
5 TraesCS1D01G281900 chr1B 86.912 489 30 7 3021 3507 509002785 509003241 5.420000e-143 518
6 TraesCS1D01G281900 chr1B 93.284 268 9 2 155 422 509000482 509000740 1.590000e-103 387
7 TraesCS1D01G281900 chr1B 95.031 161 6 2 3501 3661 509003294 509003452 6.070000e-63 252
8 TraesCS1D01G281900 chr1A 88.181 1303 115 24 1560 2831 480747482 480748776 0.000000e+00 1517
9 TraesCS1D01G281900 chr1A 90.813 283 21 4 3227 3507 480749128 480749407 1.240000e-99 374
10 TraesCS1D01G281900 chr1A 91.304 276 8 7 159 422 480746272 480746543 2.690000e-96 363
11 TraesCS1D01G281900 chr1A 95.455 198 8 1 939 1135 480746672 480746869 7.630000e-82 315
12 TraesCS1D01G281900 chr1A 88.306 248 9 5 2992 3237 480748778 480749007 2.780000e-71 279
13 TraesCS1D01G281900 chr1A 99.315 146 1 0 1 146 554471260 554471115 7.800000e-67 265
14 TraesCS1D01G281900 chr1A 99.315 146 1 0 1 146 554471519 554471664 7.800000e-67 265
15 TraesCS1D01G281900 chr1A 91.964 112 6 2 3501 3612 480749460 480749568 1.760000e-33 154
16 TraesCS1D01G281900 chr2B 90.583 669 46 13 1111 1777 668240246 668239593 0.000000e+00 870
17 TraesCS1D01G281900 chr2A 90.255 667 47 14 1113 1777 680893444 680892794 0.000000e+00 856
18 TraesCS1D01G281900 chr2A 87.685 406 33 6 1111 1514 698900142 698899752 1.200000e-124 457
19 TraesCS1D01G281900 chr2A 91.329 173 14 1 2826 2997 135473221 135473393 6.110000e-58 235
20 TraesCS1D01G281900 chr4A 90.135 669 48 14 1111 1777 603348727 603349379 0.000000e+00 854
21 TraesCS1D01G281900 chr4A 99.315 146 1 0 1 146 73811380 73811235 7.800000e-67 265
22 TraesCS1D01G281900 chr4A 97.802 91 2 0 1004 1094 603348659 603348749 1.360000e-34 158
23 TraesCS1D01G281900 chr5A 89.686 669 52 13 1111 1777 102198891 102198238 0.000000e+00 837
24 TraesCS1D01G281900 chr5A 89.571 163 16 1 2833 2994 320214405 320214243 4.790000e-49 206
25 TraesCS1D01G281900 chr5A 96.739 92 3 0 1004 1095 102198959 102198868 1.760000e-33 154
26 TraesCS1D01G281900 chr6A 90.738 637 43 12 1142 1777 60062752 60062131 0.000000e+00 835
27 TraesCS1D01G281900 chr6A 89.222 167 17 1 2833 2998 609593112 609592946 1.330000e-49 207
28 TraesCS1D01G281900 chr6B 89.387 669 53 14 1111 1777 104568370 104569022 0.000000e+00 826
29 TraesCS1D01G281900 chr6B 89.881 168 15 2 2828 2993 36133498 36133665 7.960000e-52 215
30 TraesCS1D01G281900 chr6B 95.604 91 4 0 1004 1094 104568302 104568392 2.950000e-31 147
31 TraesCS1D01G281900 chr3A 89.387 669 54 13 1111 1777 459525376 459524723 0.000000e+00 826
32 TraesCS1D01G281900 chr3A 87.931 406 32 11 1111 1514 125407305 125406915 2.580000e-126 462
33 TraesCS1D01G281900 chr3A 99.315 146 1 0 1 146 672909099 672909244 7.800000e-67 265
34 TraesCS1D01G281900 chr3A 89.831 177 17 1 1112 1287 593126715 593126891 3.680000e-55 226
35 TraesCS1D01G281900 chr3A 96.703 91 3 0 1004 1094 459525444 459525354 6.330000e-33 152
36 TraesCS1D01G281900 chr3A 94.505 91 5 0 1004 1094 237822926 237822836 1.370000e-29 141
37 TraesCS1D01G281900 chr7B 89.293 523 38 11 1111 1630 656235245 656235752 1.110000e-179 640
38 TraesCS1D01G281900 chr4B 98.065 155 3 0 1 155 308697380 308697226 1.680000e-68 270
39 TraesCS1D01G281900 chr4B 89.571 163 16 1 2833 2994 606916924 606916762 4.790000e-49 206
40 TraesCS1D01G281900 chr4B 87.429 175 18 4 2826 2997 190690796 190690969 8.020000e-47 198
41 TraesCS1D01G281900 chr4B 98.901 91 1 0 1004 1094 84651929 84652019 2.930000e-36 163
42 TraesCS1D01G281900 chrUn 99.315 146 1 0 1 146 444245503 444245648 7.800000e-67 265
43 TraesCS1D01G281900 chr6D 99.315 146 1 0 1 146 345104931 345105076 7.800000e-67 265
44 TraesCS1D01G281900 chr4D 96.795 156 4 1 1 155 19929483 19929328 3.630000e-65 259
45 TraesCS1D01G281900 chr4D 90.184 163 15 1 2833 2994 479687421 479687259 1.030000e-50 211
46 TraesCS1D01G281900 chr7A 90.449 178 16 1 1111 1287 20684622 20684445 2.200000e-57 233
47 TraesCS1D01G281900 chr7A 95.506 89 4 0 1004 1092 20684690 20684602 3.810000e-30 143
48 TraesCS1D01G281900 chr3D 90.123 162 15 1 2833 2993 128214007 128214168 3.700000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G281900 chr1D 379579452 379583112 3660 False 2936.000000 5092 100.000000 1 3661 2 chr1D.!!$F2 3660
1 TraesCS1D01G281900 chr1B 509000482 509003452 2970 False 982.000000 2771 92.000750 155 3661 4 chr1B.!!$F1 3506
2 TraesCS1D01G281900 chr1A 480746272 480749568 3296 False 500.333333 1517 91.003833 159 3612 6 chr1A.!!$F2 3453
3 TraesCS1D01G281900 chr2B 668239593 668240246 653 True 870.000000 870 90.583000 1111 1777 1 chr2B.!!$R1 666
4 TraesCS1D01G281900 chr2A 680892794 680893444 650 True 856.000000 856 90.255000 1113 1777 1 chr2A.!!$R1 664
5 TraesCS1D01G281900 chr4A 603348659 603349379 720 False 506.000000 854 93.968500 1004 1777 2 chr4A.!!$F1 773
6 TraesCS1D01G281900 chr5A 102198238 102198959 721 True 495.500000 837 93.212500 1004 1777 2 chr5A.!!$R2 773
7 TraesCS1D01G281900 chr6A 60062131 60062752 621 True 835.000000 835 90.738000 1142 1777 1 chr6A.!!$R1 635
8 TraesCS1D01G281900 chr6B 104568302 104569022 720 False 486.500000 826 92.495500 1004 1777 2 chr6B.!!$F2 773
9 TraesCS1D01G281900 chr3A 459524723 459525444 721 True 489.000000 826 93.045000 1004 1777 2 chr3A.!!$R3 773
10 TraesCS1D01G281900 chr7B 656235245 656235752 507 False 640.000000 640 89.293000 1111 1630 1 chr7B.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 1.209504 GGTGGTAGCTGTGAATAGCCA 59.790 52.381 0.00 0.0 44.76 4.75 F
1458 1603 0.686224 CCAAATTGGGCCTTCTGCAA 59.314 50.000 4.53 0.0 43.89 4.08 F
1662 1895 0.861837 CGATGGGATTACAAGCGCTC 59.138 55.000 12.06 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 2302 0.179048 TGCATGTATCTTGAGCGGGG 60.179 55.0 0.0 0.0 0.00 5.73 R
2440 2703 0.940126 CTGCATCGCATAGTTGGGTC 59.060 55.0 0.0 0.0 38.13 4.46 R
3637 4096 0.321564 CAGTTCATCTTCCGCCCACA 60.322 55.0 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.952030 AAAAAGTCTTTGTTTATTGGGAAAGAA 57.048 25.926 0.00 0.00 36.46 2.52
41 42 9.764363 AAAGTCTTTGTTTATTGGGAAAGAATC 57.236 29.630 0.00 0.00 36.46 2.52
42 43 8.477419 AGTCTTTGTTTATTGGGAAAGAATCA 57.523 30.769 0.00 0.00 36.46 2.57
43 44 8.923270 AGTCTTTGTTTATTGGGAAAGAATCAA 58.077 29.630 0.00 0.00 36.46 2.57
44 45 9.710900 GTCTTTGTTTATTGGGAAAGAATCAAT 57.289 29.630 0.00 0.00 36.46 2.57
66 67 8.984764 TCAATATACTTTTAATGTCGAATCGGG 58.015 33.333 1.76 0.00 0.00 5.14
67 68 8.984764 CAATATACTTTTAATGTCGAATCGGGA 58.015 33.333 1.76 0.00 0.00 5.14
68 69 9.720769 AATATACTTTTAATGTCGAATCGGGAT 57.279 29.630 1.76 0.00 0.00 3.85
69 70 9.720769 ATATACTTTTAATGTCGAATCGGGATT 57.279 29.630 1.76 4.20 0.00 3.01
70 71 6.359480 ACTTTTAATGTCGAATCGGGATTC 57.641 37.500 10.65 10.65 42.76 2.52
71 72 5.878116 ACTTTTAATGTCGAATCGGGATTCA 59.122 36.000 18.52 3.61 45.60 2.57
72 73 5.728351 TTTAATGTCGAATCGGGATTCAC 57.272 39.130 18.52 15.29 45.60 3.18
73 74 3.543680 AATGTCGAATCGGGATTCACT 57.456 42.857 18.52 6.33 45.60 3.41
74 75 4.665833 AATGTCGAATCGGGATTCACTA 57.334 40.909 18.52 6.58 45.60 2.74
75 76 4.665833 ATGTCGAATCGGGATTCACTAA 57.334 40.909 18.52 4.52 45.60 2.24
76 77 4.041740 TGTCGAATCGGGATTCACTAAG 57.958 45.455 18.52 5.01 45.60 2.18
77 78 3.697542 TGTCGAATCGGGATTCACTAAGA 59.302 43.478 18.52 6.93 45.60 2.10
78 79 4.043073 GTCGAATCGGGATTCACTAAGAC 58.957 47.826 18.52 13.46 45.60 3.01
79 80 3.697542 TCGAATCGGGATTCACTAAGACA 59.302 43.478 18.52 0.00 45.60 3.41
80 81 4.045104 CGAATCGGGATTCACTAAGACAG 58.955 47.826 18.52 0.00 45.60 3.51
81 82 4.202020 CGAATCGGGATTCACTAAGACAGA 60.202 45.833 18.52 0.00 45.60 3.41
82 83 5.661458 GAATCGGGATTCACTAAGACAGAA 58.339 41.667 14.81 0.00 44.89 3.02
83 84 5.677319 ATCGGGATTCACTAAGACAGAAA 57.323 39.130 0.00 0.00 0.00 2.52
84 85 5.677319 TCGGGATTCACTAAGACAGAAAT 57.323 39.130 0.00 0.00 0.00 2.17
85 86 6.785337 TCGGGATTCACTAAGACAGAAATA 57.215 37.500 0.00 0.00 0.00 1.40
86 87 7.177832 TCGGGATTCACTAAGACAGAAATAA 57.822 36.000 0.00 0.00 0.00 1.40
87 88 7.617225 TCGGGATTCACTAAGACAGAAATAAA 58.383 34.615 0.00 0.00 0.00 1.40
88 89 7.764443 TCGGGATTCACTAAGACAGAAATAAAG 59.236 37.037 0.00 0.00 0.00 1.85
89 90 7.466050 CGGGATTCACTAAGACAGAAATAAAGC 60.466 40.741 0.00 0.00 0.00 3.51
90 91 7.336931 GGGATTCACTAAGACAGAAATAAAGCA 59.663 37.037 0.00 0.00 0.00 3.91
91 92 8.897752 GGATTCACTAAGACAGAAATAAAGCAT 58.102 33.333 0.00 0.00 0.00 3.79
94 95 8.044060 TCACTAAGACAGAAATAAAGCATTGG 57.956 34.615 0.00 0.00 0.00 3.16
95 96 7.121168 TCACTAAGACAGAAATAAAGCATTGGG 59.879 37.037 0.00 0.00 0.00 4.12
96 97 6.948309 ACTAAGACAGAAATAAAGCATTGGGT 59.052 34.615 0.00 0.00 0.00 4.51
97 98 5.904362 AGACAGAAATAAAGCATTGGGTC 57.096 39.130 0.00 0.00 0.00 4.46
98 99 4.396166 AGACAGAAATAAAGCATTGGGTCG 59.604 41.667 0.00 0.00 31.81 4.79
99 100 4.331968 ACAGAAATAAAGCATTGGGTCGA 58.668 39.130 0.00 0.00 0.00 4.20
100 101 4.764823 ACAGAAATAAAGCATTGGGTCGAA 59.235 37.500 0.00 0.00 0.00 3.71
101 102 5.095490 CAGAAATAAAGCATTGGGTCGAAC 58.905 41.667 0.00 0.00 0.00 3.95
102 103 5.010282 AGAAATAAAGCATTGGGTCGAACT 58.990 37.500 0.00 0.00 0.00 3.01
103 104 4.965119 AATAAAGCATTGGGTCGAACTC 57.035 40.909 0.00 0.00 0.00 3.01
104 105 2.568623 AAAGCATTGGGTCGAACTCT 57.431 45.000 0.00 0.00 0.00 3.24
105 106 2.568623 AAGCATTGGGTCGAACTCTT 57.431 45.000 0.00 0.00 0.00 2.85
106 107 2.100605 AGCATTGGGTCGAACTCTTC 57.899 50.000 0.00 0.00 0.00 2.87
107 108 1.625818 AGCATTGGGTCGAACTCTTCT 59.374 47.619 0.00 0.00 0.00 2.85
108 109 2.039084 AGCATTGGGTCGAACTCTTCTT 59.961 45.455 0.00 0.00 0.00 2.52
109 110 2.814336 GCATTGGGTCGAACTCTTCTTT 59.186 45.455 0.00 0.00 0.00 2.52
110 111 3.365364 GCATTGGGTCGAACTCTTCTTTG 60.365 47.826 0.00 0.00 0.00 2.77
111 112 2.543777 TGGGTCGAACTCTTCTTTGG 57.456 50.000 0.00 0.00 0.00 3.28
112 113 1.766496 TGGGTCGAACTCTTCTTTGGT 59.234 47.619 0.00 0.00 0.00 3.67
113 114 2.143925 GGGTCGAACTCTTCTTTGGTG 58.856 52.381 0.00 0.00 0.00 4.17
114 115 2.484947 GGGTCGAACTCTTCTTTGGTGT 60.485 50.000 0.00 0.00 0.00 4.16
115 116 3.203716 GGTCGAACTCTTCTTTGGTGTT 58.796 45.455 0.00 0.00 0.00 3.32
116 117 4.374399 GGTCGAACTCTTCTTTGGTGTTA 58.626 43.478 0.00 0.00 0.00 2.41
117 118 4.812626 GGTCGAACTCTTCTTTGGTGTTAA 59.187 41.667 0.00 0.00 0.00 2.01
118 119 5.050295 GGTCGAACTCTTCTTTGGTGTTAAG 60.050 44.000 0.00 0.00 0.00 1.85
119 120 5.050295 GTCGAACTCTTCTTTGGTGTTAAGG 60.050 44.000 0.00 0.00 0.00 2.69
120 121 4.814771 CGAACTCTTCTTTGGTGTTAAGGT 59.185 41.667 0.00 0.00 0.00 3.50
121 122 5.277345 CGAACTCTTCTTTGGTGTTAAGGTG 60.277 44.000 0.00 0.00 0.00 4.00
122 123 4.461198 ACTCTTCTTTGGTGTTAAGGTGG 58.539 43.478 0.00 0.00 0.00 4.61
123 124 4.079958 ACTCTTCTTTGGTGTTAAGGTGGT 60.080 41.667 0.00 0.00 0.00 4.16
124 125 5.131475 ACTCTTCTTTGGTGTTAAGGTGGTA 59.869 40.000 0.00 0.00 0.00 3.25
125 126 5.617252 TCTTCTTTGGTGTTAAGGTGGTAG 58.383 41.667 0.00 0.00 0.00 3.18
126 127 3.746940 TCTTTGGTGTTAAGGTGGTAGC 58.253 45.455 0.00 0.00 0.00 3.58
127 128 3.393278 TCTTTGGTGTTAAGGTGGTAGCT 59.607 43.478 0.00 0.00 0.00 3.32
128 129 2.851263 TGGTGTTAAGGTGGTAGCTG 57.149 50.000 0.00 0.00 0.00 4.24
129 130 2.051692 TGGTGTTAAGGTGGTAGCTGT 58.948 47.619 0.00 0.00 0.00 4.40
130 131 2.224426 TGGTGTTAAGGTGGTAGCTGTG 60.224 50.000 0.00 0.00 0.00 3.66
131 132 2.038033 GGTGTTAAGGTGGTAGCTGTGA 59.962 50.000 0.00 0.00 0.00 3.58
132 133 3.495453 GGTGTTAAGGTGGTAGCTGTGAA 60.495 47.826 0.00 0.00 0.00 3.18
133 134 4.324267 GTGTTAAGGTGGTAGCTGTGAAT 58.676 43.478 0.00 0.00 0.00 2.57
134 135 5.484715 GTGTTAAGGTGGTAGCTGTGAATA 58.515 41.667 0.00 0.00 0.00 1.75
135 136 5.581085 GTGTTAAGGTGGTAGCTGTGAATAG 59.419 44.000 0.00 0.00 0.00 1.73
136 137 2.990066 AGGTGGTAGCTGTGAATAGC 57.010 50.000 0.00 0.00 44.01 2.97
137 138 1.486726 AGGTGGTAGCTGTGAATAGCC 59.513 52.381 0.00 0.00 44.76 3.93
138 139 1.209504 GGTGGTAGCTGTGAATAGCCA 59.790 52.381 0.00 0.00 44.76 4.75
139 140 2.158755 GGTGGTAGCTGTGAATAGCCAT 60.159 50.000 0.00 0.00 44.76 4.40
140 141 3.134458 GTGGTAGCTGTGAATAGCCATC 58.866 50.000 0.00 0.00 44.76 3.51
141 142 2.224042 TGGTAGCTGTGAATAGCCATCG 60.224 50.000 0.00 0.00 44.76 3.84
142 143 2.035961 GGTAGCTGTGAATAGCCATCGA 59.964 50.000 0.00 0.00 44.76 3.59
143 144 2.231215 AGCTGTGAATAGCCATCGAC 57.769 50.000 0.00 0.00 44.76 4.20
144 145 1.759445 AGCTGTGAATAGCCATCGACT 59.241 47.619 0.00 0.00 44.76 4.18
145 146 2.959030 AGCTGTGAATAGCCATCGACTA 59.041 45.455 0.00 0.00 44.76 2.59
146 147 3.384789 AGCTGTGAATAGCCATCGACTAA 59.615 43.478 0.00 0.00 44.76 2.24
147 148 3.491267 GCTGTGAATAGCCATCGACTAAC 59.509 47.826 0.00 0.00 37.73 2.34
148 149 3.702330 TGTGAATAGCCATCGACTAACG 58.298 45.455 0.00 0.00 44.09 3.18
149 150 7.937762 GCTGTGAATAGCCATCGACTAACGA 62.938 48.000 0.00 0.00 45.19 3.85
250 257 2.088674 CTCACCCCGACCATCCGATC 62.089 65.000 0.00 0.00 0.00 3.69
251 258 2.842936 ACCCCGACCATCCGATCC 60.843 66.667 0.00 0.00 0.00 3.36
256 268 1.524008 CCGACCATCCGATCCGATCA 61.524 60.000 9.07 0.00 0.00 2.92
324 337 3.316573 CTCCGCCCTTTTCTCCGCT 62.317 63.158 0.00 0.00 0.00 5.52
1245 1374 1.132453 GGGCTTTGTTAATCCGTGAGC 59.868 52.381 0.00 0.00 0.00 4.26
1247 1376 2.414161 GGCTTTGTTAATCCGTGAGCAC 60.414 50.000 0.00 0.00 0.00 4.40
1273 1405 6.667848 TCAACTAGAGTATTGAGATGGTTGGA 59.332 38.462 0.00 0.00 34.31 3.53
1276 1408 8.783660 ACTAGAGTATTGAGATGGTTGGATAA 57.216 34.615 0.00 0.00 0.00 1.75
1358 1503 8.110860 AGAAAATATGTAGGTTTGGACTTGTG 57.889 34.615 0.00 0.00 0.00 3.33
1373 1518 2.744202 ACTTGTGATGAGTGGCGATTTC 59.256 45.455 0.00 0.00 0.00 2.17
1402 1547 3.426568 GCTCTTGCACGGGTGAGC 61.427 66.667 12.14 12.14 43.75 4.26
1411 1556 2.425592 CGGGTGAGCACTGTCCAA 59.574 61.111 0.16 0.00 0.00 3.53
1430 1575 3.760684 CCAAAAACTAATGGCTGAGAGCT 59.239 43.478 0.00 0.00 41.99 4.09
1458 1603 0.686224 CCAAATTGGGCCTTCTGCAA 59.314 50.000 4.53 0.00 43.89 4.08
1529 1674 5.048364 ACAAATTTAGTGCAATCGTGGCTTA 60.048 36.000 0.00 0.00 0.00 3.09
1533 1678 3.492421 AGTGCAATCGTGGCTTATTTG 57.508 42.857 0.00 0.00 0.00 2.32
1653 1886 4.622260 TCTGATTGCATCGATGGGATTA 57.378 40.909 26.00 0.00 31.28 1.75
1662 1895 0.861837 CGATGGGATTACAAGCGCTC 59.138 55.000 12.06 0.00 0.00 5.03
1749 1982 7.737972 TGCTGTTTTAGTGAGCTTATTTGTA 57.262 32.000 0.00 0.00 33.66 2.41
1782 2015 8.388656 ACTGGGTAATGATAAAAGACCTTCTA 57.611 34.615 0.00 0.00 0.00 2.10
1793 2026 9.613957 GATAAAAGACCTTCTAAAACTCTTTGC 57.386 33.333 0.00 0.00 32.70 3.68
1833 2066 5.695851 TGATTTCTTGCTTTCTCCAGTTC 57.304 39.130 0.00 0.00 0.00 3.01
2008 2245 5.772393 ACAGAAATGTGGGGTTCTATACA 57.228 39.130 0.00 0.00 32.79 2.29
2045 2282 6.729569 ACTAGGTTAATGGTCCTGTTCTAGTT 59.270 38.462 0.00 0.00 33.41 2.24
2046 2283 6.051179 AGGTTAATGGTCCTGTTCTAGTTC 57.949 41.667 0.00 0.00 32.29 3.01
2065 2302 3.864789 TCAATTATTCCCTCCCTCTGC 57.135 47.619 0.00 0.00 0.00 4.26
2107 2349 3.001634 CGGCTGAAGCACACATATTACAG 59.998 47.826 4.43 0.00 44.36 2.74
2110 2352 4.517285 CTGAAGCACACATATTACAGGGT 58.483 43.478 0.00 0.00 0.00 4.34
2121 2363 7.444792 ACACATATTACAGGGTTGACGTTTAAA 59.555 33.333 0.00 0.00 0.00 1.52
2159 2404 3.366374 GCCCTTGTGAGTTATTGCTTGTC 60.366 47.826 0.00 0.00 0.00 3.18
2186 2438 6.017109 AGTGGAGTTTATTGTTGCACACTAAG 60.017 38.462 0.00 0.00 35.87 2.18
2191 2443 9.724839 GAGTTTATTGTTGCACACTAAGTTTAA 57.275 29.630 0.00 0.00 27.50 1.52
2343 2603 7.686438 AAACTTATCTGTGCATGTCATACAA 57.314 32.000 0.00 0.00 0.00 2.41
2351 2611 8.510243 TCTGTGCATGTCATACAATCTTAATT 57.490 30.769 0.00 0.00 0.00 1.40
2440 2703 3.681897 GTGTCTCCAGCAACACTAATGAG 59.318 47.826 0.00 0.00 41.97 2.90
2453 2716 3.804325 CACTAATGAGACCCAACTATGCG 59.196 47.826 0.00 0.00 0.00 4.73
2801 3064 3.591527 AGATGGAAATGTTGGGACACCTA 59.408 43.478 0.00 0.00 39.29 3.08
2831 3096 1.138266 TGGAGCGCATTTCCTAGGTAC 59.862 52.381 11.47 0.00 35.67 3.34
2832 3097 1.413077 GGAGCGCATTTCCTAGGTACT 59.587 52.381 11.47 0.00 46.37 2.73
2833 3098 2.626743 GGAGCGCATTTCCTAGGTACTA 59.373 50.000 11.47 0.00 41.75 1.82
2834 3099 3.552478 GGAGCGCATTTCCTAGGTACTAC 60.552 52.174 11.47 0.00 41.75 2.73
2835 3100 3.297736 AGCGCATTTCCTAGGTACTACT 58.702 45.455 11.47 0.00 41.75 2.57
2836 3101 3.318557 AGCGCATTTCCTAGGTACTACTC 59.681 47.826 11.47 0.00 41.75 2.59
2837 3102 3.552478 GCGCATTTCCTAGGTACTACTCC 60.552 52.174 9.08 0.00 41.75 3.85
2838 3103 3.005578 CGCATTTCCTAGGTACTACTCCC 59.994 52.174 9.08 0.00 41.75 4.30
2839 3104 4.224762 GCATTTCCTAGGTACTACTCCCT 58.775 47.826 9.08 0.00 41.75 4.20
2840 3105 4.281435 GCATTTCCTAGGTACTACTCCCTC 59.719 50.000 9.08 0.00 41.75 4.30
2841 3106 4.533001 TTTCCTAGGTACTACTCCCTCC 57.467 50.000 9.08 0.00 41.75 4.30
2842 3107 2.053244 TCCTAGGTACTACTCCCTCCG 58.947 57.143 9.08 0.00 41.75 4.63
2843 3108 1.773653 CCTAGGTACTACTCCCTCCGT 59.226 57.143 0.00 0.00 41.75 4.69
2844 3109 2.486907 CCTAGGTACTACTCCCTCCGTG 60.487 59.091 0.00 0.00 41.75 4.94
2845 3110 0.395448 AGGTACTACTCCCTCCGTGC 60.395 60.000 0.00 0.00 36.02 5.34
2846 3111 0.395448 GGTACTACTCCCTCCGTGCT 60.395 60.000 0.00 0.00 0.00 4.40
2847 3112 1.133976 GGTACTACTCCCTCCGTGCTA 60.134 57.143 0.00 0.00 0.00 3.49
2848 3113 2.648059 GTACTACTCCCTCCGTGCTAA 58.352 52.381 0.00 0.00 0.00 3.09
2849 3114 2.226962 ACTACTCCCTCCGTGCTAAA 57.773 50.000 0.00 0.00 0.00 1.85
2850 3115 2.748388 ACTACTCCCTCCGTGCTAAAT 58.252 47.619 0.00 0.00 0.00 1.40
2851 3116 3.907221 ACTACTCCCTCCGTGCTAAATA 58.093 45.455 0.00 0.00 0.00 1.40
2852 3117 4.481072 ACTACTCCCTCCGTGCTAAATAT 58.519 43.478 0.00 0.00 0.00 1.28
2853 3118 5.638133 ACTACTCCCTCCGTGCTAAATATA 58.362 41.667 0.00 0.00 0.00 0.86
2854 3119 6.073314 ACTACTCCCTCCGTGCTAAATATAA 58.927 40.000 0.00 0.00 0.00 0.98
2855 3120 5.470047 ACTCCCTCCGTGCTAAATATAAG 57.530 43.478 0.00 0.00 0.00 1.73
2856 3121 4.900054 ACTCCCTCCGTGCTAAATATAAGT 59.100 41.667 0.00 0.00 0.00 2.24
2857 3122 5.010820 ACTCCCTCCGTGCTAAATATAAGTC 59.989 44.000 0.00 0.00 0.00 3.01
2858 3123 5.145564 TCCCTCCGTGCTAAATATAAGTCT 58.854 41.667 0.00 0.00 0.00 3.24
2859 3124 5.601313 TCCCTCCGTGCTAAATATAAGTCTT 59.399 40.000 0.00 0.00 0.00 3.01
2860 3125 6.099269 TCCCTCCGTGCTAAATATAAGTCTTT 59.901 38.462 0.00 0.00 0.00 2.52
2861 3126 6.766467 CCCTCCGTGCTAAATATAAGTCTTTT 59.234 38.462 0.00 0.00 0.00 2.27
2862 3127 7.041984 CCCTCCGTGCTAAATATAAGTCTTTTC 60.042 40.741 0.00 0.00 0.00 2.29
2863 3128 7.494625 CCTCCGTGCTAAATATAAGTCTTTTCA 59.505 37.037 0.00 0.00 0.00 2.69
2864 3129 8.420374 TCCGTGCTAAATATAAGTCTTTTCAG 57.580 34.615 0.00 0.00 0.00 3.02
2865 3130 8.255206 TCCGTGCTAAATATAAGTCTTTTCAGA 58.745 33.333 0.00 0.00 0.00 3.27
2866 3131 8.543774 CCGTGCTAAATATAAGTCTTTTCAGAG 58.456 37.037 0.00 0.00 0.00 3.35
2867 3132 9.302345 CGTGCTAAATATAAGTCTTTTCAGAGA 57.698 33.333 0.00 0.00 0.00 3.10
2877 3142 9.898152 ATAAGTCTTTTCAGAGATTTTCCTAGG 57.102 33.333 0.82 0.82 29.76 3.02
2878 3143 6.716284 AGTCTTTTCAGAGATTTTCCTAGGG 58.284 40.000 9.46 0.00 0.00 3.53
2879 3144 6.502158 AGTCTTTTCAGAGATTTTCCTAGGGA 59.498 38.462 9.46 0.00 0.00 4.20
2880 3145 6.596106 GTCTTTTCAGAGATTTTCCTAGGGAC 59.404 42.308 9.46 0.00 0.00 4.46
2881 3146 6.502158 TCTTTTCAGAGATTTTCCTAGGGACT 59.498 38.462 9.46 0.00 46.37 3.85
2882 3147 7.678598 TCTTTTCAGAGATTTTCCTAGGGACTA 59.321 37.037 9.46 0.00 41.75 2.59
2883 3148 6.793505 TTCAGAGATTTTCCTAGGGACTAC 57.206 41.667 9.46 0.00 41.75 2.73
2884 3149 5.838955 TCAGAGATTTTCCTAGGGACTACA 58.161 41.667 9.46 0.00 41.75 2.74
2885 3150 6.444704 TCAGAGATTTTCCTAGGGACTACAT 58.555 40.000 9.46 0.00 41.75 2.29
2886 3151 7.592736 TCAGAGATTTTCCTAGGGACTACATA 58.407 38.462 9.46 0.00 41.75 2.29
2887 3152 7.506261 TCAGAGATTTTCCTAGGGACTACATAC 59.494 40.741 9.46 0.00 41.75 2.39
2888 3153 6.490721 AGAGATTTTCCTAGGGACTACATACG 59.509 42.308 9.46 0.00 41.75 3.06
2889 3154 5.539193 AGATTTTCCTAGGGACTACATACGG 59.461 44.000 9.46 0.00 41.75 4.02
2890 3155 4.524802 TTTCCTAGGGACTACATACGGA 57.475 45.455 9.46 0.00 41.75 4.69
2891 3156 4.736611 TTCCTAGGGACTACATACGGAT 57.263 45.455 9.46 0.00 41.75 4.18
2892 3157 4.030314 TCCTAGGGACTACATACGGATG 57.970 50.000 9.46 5.94 41.75 3.51
2893 3158 3.090037 CCTAGGGACTACATACGGATGG 58.910 54.545 13.36 0.00 41.75 3.51
2894 3159 3.245158 CCTAGGGACTACATACGGATGGA 60.245 52.174 13.36 1.28 41.75 3.41
2895 3160 3.544698 AGGGACTACATACGGATGGAT 57.455 47.619 13.36 0.00 36.02 3.41
2896 3161 4.669866 AGGGACTACATACGGATGGATA 57.330 45.455 13.36 0.00 36.02 2.59
2897 3162 5.208294 AGGGACTACATACGGATGGATAT 57.792 43.478 13.36 0.00 36.02 1.63
2898 3163 6.337185 AGGGACTACATACGGATGGATATA 57.663 41.667 13.36 0.00 36.02 0.86
2899 3164 6.366340 AGGGACTACATACGGATGGATATAG 58.634 44.000 13.36 7.00 36.02 1.31
2900 3165 5.535406 GGGACTACATACGGATGGATATAGG 59.465 48.000 13.36 0.00 37.39 2.57
2901 3166 5.009811 GGACTACATACGGATGGATATAGGC 59.990 48.000 13.36 6.44 37.39 3.93
2902 3167 5.516044 ACTACATACGGATGGATATAGGCA 58.484 41.667 13.36 0.00 37.39 4.75
2903 3168 6.136857 ACTACATACGGATGGATATAGGCAT 58.863 40.000 13.36 0.00 37.39 4.40
2904 3169 7.295340 ACTACATACGGATGGATATAGGCATA 58.705 38.462 13.36 0.00 37.39 3.14
2905 3170 7.950684 ACTACATACGGATGGATATAGGCATAT 59.049 37.037 13.36 0.00 37.39 1.78
2906 3171 7.618019 ACATACGGATGGATATAGGCATATT 57.382 36.000 13.36 0.00 37.39 1.28
2907 3172 8.034313 ACATACGGATGGATATAGGCATATTT 57.966 34.615 13.36 0.00 37.39 1.40
2908 3173 8.494433 ACATACGGATGGATATAGGCATATTTT 58.506 33.333 13.36 0.00 37.39 1.82
2909 3174 9.996554 CATACGGATGGATATAGGCATATTTTA 57.003 33.333 0.00 0.00 0.00 1.52
2911 3176 8.319057 ACGGATGGATATAGGCATATTTTAGA 57.681 34.615 0.00 0.00 0.00 2.10
2912 3177 8.424918 ACGGATGGATATAGGCATATTTTAGAG 58.575 37.037 0.00 0.00 0.00 2.43
2913 3178 8.642432 CGGATGGATATAGGCATATTTTAGAGA 58.358 37.037 0.00 0.00 0.00 3.10
2914 3179 9.995003 GGATGGATATAGGCATATTTTAGAGAG 57.005 37.037 0.00 0.00 0.00 3.20
2924 3189 9.153479 AGGCATATTTTAGAGAGTAGATTCACT 57.847 33.333 0.00 0.00 0.00 3.41
2925 3190 9.418045 GGCATATTTTAGAGAGTAGATTCACTC 57.582 37.037 7.69 7.69 44.44 3.51
2926 3191 9.973450 GCATATTTTAGAGAGTAGATTCACTCA 57.027 33.333 14.52 0.00 46.15 3.41
2932 3197 8.709386 TTAGAGAGTAGATTCACTCATTTTGC 57.291 34.615 14.52 0.00 46.15 3.68
2933 3198 6.945218 AGAGAGTAGATTCACTCATTTTGCT 58.055 36.000 14.52 0.00 46.15 3.91
2934 3199 7.041107 AGAGAGTAGATTCACTCATTTTGCTC 58.959 38.462 14.52 0.00 46.15 4.26
2935 3200 6.112058 AGAGTAGATTCACTCATTTTGCTCC 58.888 40.000 14.52 0.00 46.15 4.70
2936 3201 4.872691 AGTAGATTCACTCATTTTGCTCCG 59.127 41.667 0.00 0.00 0.00 4.63
2937 3202 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2938 3203 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2939 3204 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2940 3205 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2941 3206 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2942 3207 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2943 3208 5.670485 TCACTCATTTTGCTCCGTATGTAT 58.330 37.500 0.00 0.00 0.00 2.29
2944 3209 6.112734 TCACTCATTTTGCTCCGTATGTATT 58.887 36.000 0.00 0.00 0.00 1.89
2945 3210 6.257849 TCACTCATTTTGCTCCGTATGTATTC 59.742 38.462 0.00 0.00 0.00 1.75
2946 3211 5.527582 ACTCATTTTGCTCCGTATGTATTCC 59.472 40.000 0.00 0.00 0.00 3.01
2947 3212 5.432645 TCATTTTGCTCCGTATGTATTCCA 58.567 37.500 0.00 0.00 0.00 3.53
2948 3213 6.061441 TCATTTTGCTCCGTATGTATTCCAT 58.939 36.000 0.00 0.00 37.58 3.41
2949 3214 7.220740 TCATTTTGCTCCGTATGTATTCCATA 58.779 34.615 0.00 0.00 34.86 2.74
2950 3215 7.882791 TCATTTTGCTCCGTATGTATTCCATAT 59.117 33.333 0.00 0.00 38.29 1.78
2951 3216 8.514594 CATTTTGCTCCGTATGTATTCCATATT 58.485 33.333 0.00 0.00 38.29 1.28
2952 3217 7.433708 TTTGCTCCGTATGTATTCCATATTG 57.566 36.000 0.00 0.00 38.29 1.90
2953 3218 5.487433 TGCTCCGTATGTATTCCATATTGG 58.513 41.667 0.00 0.00 38.29 3.16
2954 3219 5.247337 TGCTCCGTATGTATTCCATATTGGA 59.753 40.000 0.00 0.00 46.61 3.53
2969 3234 8.337118 TCCATATTGGATTCTCTAAAAGGACT 57.663 34.615 0.00 0.00 42.67 3.85
2970 3235 8.781951 TCCATATTGGATTCTCTAAAAGGACTT 58.218 33.333 0.00 0.00 42.67 3.01
2999 3264 9.712305 ATTTAGGAATGGATGAAGTATTACTCG 57.288 33.333 0.00 0.00 0.00 4.18
3035 3300 5.528690 CCTCCAGAAAATGATGCTAAATCGA 59.471 40.000 0.00 0.00 0.00 3.59
3069 3334 3.708631 AGTGTCTCCAGATACCCTTCATG 59.291 47.826 0.18 0.00 36.93 3.07
3088 3354 7.708752 CCTTCATGTTCTTCTCTAAGGTGATAC 59.291 40.741 0.00 0.00 33.22 2.24
3089 3355 7.962995 TCATGTTCTTCTCTAAGGTGATACT 57.037 36.000 0.00 0.00 33.22 2.12
3090 3356 9.475620 TTCATGTTCTTCTCTAAGGTGATACTA 57.524 33.333 0.00 0.00 33.22 1.82
3132 3398 3.118956 GCAGCTGTACCAGTTATCTGACT 60.119 47.826 16.64 0.00 43.76 3.41
3137 3403 6.095720 AGCTGTACCAGTTATCTGACTAGTTC 59.904 42.308 0.00 0.00 43.76 3.01
3287 3686 1.600957 CAGGCATGCTGAAACCTATCG 59.399 52.381 18.92 0.00 0.00 2.92
3338 3737 0.603975 GTTGGTCTGGACAGAGGTGC 60.604 60.000 1.56 0.00 38.27 5.01
3373 3772 3.548587 CGACTGCTCTGATTTTGTTGTG 58.451 45.455 0.00 0.00 0.00 3.33
3386 3785 6.485313 TGATTTTGTTGTGTAACTCTACCTGG 59.515 38.462 0.00 0.00 38.04 4.45
3414 3813 4.917415 CCGTTAAAGAAGTCAGGCAATTTG 59.083 41.667 0.00 0.00 0.00 2.32
3424 3823 6.899393 AGTCAGGCAATTTGAGATTACAAA 57.101 33.333 0.00 0.00 42.58 2.83
3464 3863 4.308899 ACGCCATGTTGACTATACTCTC 57.691 45.455 0.00 0.00 0.00 3.20
3465 3864 3.954904 ACGCCATGTTGACTATACTCTCT 59.045 43.478 0.00 0.00 0.00 3.10
3468 3867 4.294232 CCATGTTGACTATACTCTCTGCG 58.706 47.826 0.00 0.00 0.00 5.18
3491 3891 5.237048 GCCTCTAGATCATCTGAATGGAAC 58.763 45.833 0.00 0.00 33.42 3.62
3591 4050 2.702592 TTTGCGGGGATATCGAACTT 57.297 45.000 0.00 0.00 0.00 2.66
3622 4081 3.071874 AGATGAAATTCAGGCGGACAA 57.928 42.857 1.10 0.00 0.00 3.18
3637 4096 0.038526 GACAATGTCCGTGAGTCCGT 60.039 55.000 1.10 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.952030 TTCTTTCCCAATAAACAAAGACTTTTT 57.048 25.926 0.00 0.00 35.17 1.94
15 16 9.764363 GATTCTTTCCCAATAAACAAAGACTTT 57.236 29.630 0.00 0.00 35.17 2.66
16 17 8.923270 TGATTCTTTCCCAATAAACAAAGACTT 58.077 29.630 0.00 0.00 35.17 3.01
17 18 8.477419 TGATTCTTTCCCAATAAACAAAGACT 57.523 30.769 0.00 0.00 35.17 3.24
18 19 9.710900 ATTGATTCTTTCCCAATAAACAAAGAC 57.289 29.630 0.00 0.00 35.17 3.01
40 41 8.984764 CCCGATTCGACATTAAAAGTATATTGA 58.015 33.333 7.83 0.00 0.00 2.57
41 42 8.984764 TCCCGATTCGACATTAAAAGTATATTG 58.015 33.333 7.83 0.00 0.00 1.90
42 43 9.720769 ATCCCGATTCGACATTAAAAGTATATT 57.279 29.630 7.83 0.00 0.00 1.28
43 44 9.720769 AATCCCGATTCGACATTAAAAGTATAT 57.279 29.630 7.83 0.00 0.00 0.86
44 45 9.199982 GAATCCCGATTCGACATTAAAAGTATA 57.800 33.333 7.83 0.00 37.97 1.47
45 46 8.084590 GAATCCCGATTCGACATTAAAAGTAT 57.915 34.615 7.83 0.00 37.97 2.12
46 47 7.473027 GAATCCCGATTCGACATTAAAAGTA 57.527 36.000 7.83 0.00 37.97 2.24
47 48 6.359480 GAATCCCGATTCGACATTAAAAGT 57.641 37.500 7.83 0.00 37.97 2.66
59 60 5.263968 TCTGTCTTAGTGAATCCCGATTC 57.736 43.478 9.98 9.98 45.55 2.52
60 61 5.677319 TTCTGTCTTAGTGAATCCCGATT 57.323 39.130 0.00 0.00 0.00 3.34
61 62 5.677319 TTTCTGTCTTAGTGAATCCCGAT 57.323 39.130 0.00 0.00 0.00 4.18
62 63 5.677319 ATTTCTGTCTTAGTGAATCCCGA 57.323 39.130 0.00 0.00 0.00 5.14
63 64 7.466050 GCTTTATTTCTGTCTTAGTGAATCCCG 60.466 40.741 0.00 0.00 0.00 5.14
64 65 7.336931 TGCTTTATTTCTGTCTTAGTGAATCCC 59.663 37.037 0.00 0.00 0.00 3.85
65 66 8.268850 TGCTTTATTTCTGTCTTAGTGAATCC 57.731 34.615 0.00 0.00 0.00 3.01
68 69 8.514594 CCAATGCTTTATTTCTGTCTTAGTGAA 58.485 33.333 0.00 0.00 0.00 3.18
69 70 7.121168 CCCAATGCTTTATTTCTGTCTTAGTGA 59.879 37.037 0.00 0.00 0.00 3.41
70 71 7.094205 ACCCAATGCTTTATTTCTGTCTTAGTG 60.094 37.037 0.00 0.00 0.00 2.74
71 72 6.948309 ACCCAATGCTTTATTTCTGTCTTAGT 59.052 34.615 0.00 0.00 0.00 2.24
72 73 7.396540 ACCCAATGCTTTATTTCTGTCTTAG 57.603 36.000 0.00 0.00 0.00 2.18
73 74 6.093495 CGACCCAATGCTTTATTTCTGTCTTA 59.907 38.462 0.00 0.00 0.00 2.10
74 75 5.106157 CGACCCAATGCTTTATTTCTGTCTT 60.106 40.000 0.00 0.00 0.00 3.01
75 76 4.396166 CGACCCAATGCTTTATTTCTGTCT 59.604 41.667 0.00 0.00 0.00 3.41
76 77 4.394920 TCGACCCAATGCTTTATTTCTGTC 59.605 41.667 0.00 0.00 0.00 3.51
77 78 4.331968 TCGACCCAATGCTTTATTTCTGT 58.668 39.130 0.00 0.00 0.00 3.41
78 79 4.963276 TCGACCCAATGCTTTATTTCTG 57.037 40.909 0.00 0.00 0.00 3.02
79 80 5.010282 AGTTCGACCCAATGCTTTATTTCT 58.990 37.500 0.00 0.00 0.00 2.52
80 81 5.123979 AGAGTTCGACCCAATGCTTTATTTC 59.876 40.000 0.00 0.00 0.00 2.17
81 82 5.010282 AGAGTTCGACCCAATGCTTTATTT 58.990 37.500 0.00 0.00 0.00 1.40
82 83 4.589908 AGAGTTCGACCCAATGCTTTATT 58.410 39.130 0.00 0.00 0.00 1.40
83 84 4.222124 AGAGTTCGACCCAATGCTTTAT 57.778 40.909 0.00 0.00 0.00 1.40
84 85 3.695830 AGAGTTCGACCCAATGCTTTA 57.304 42.857 0.00 0.00 0.00 1.85
85 86 2.568623 AGAGTTCGACCCAATGCTTT 57.431 45.000 0.00 0.00 0.00 3.51
86 87 2.039084 AGAAGAGTTCGACCCAATGCTT 59.961 45.455 0.00 0.00 34.02 3.91
87 88 1.625818 AGAAGAGTTCGACCCAATGCT 59.374 47.619 0.00 0.00 34.02 3.79
88 89 2.100605 AGAAGAGTTCGACCCAATGC 57.899 50.000 0.00 0.00 34.02 3.56
89 90 3.189287 CCAAAGAAGAGTTCGACCCAATG 59.811 47.826 0.00 0.00 34.02 2.82
90 91 3.181443 ACCAAAGAAGAGTTCGACCCAAT 60.181 43.478 0.00 0.00 34.02 3.16
91 92 2.171870 ACCAAAGAAGAGTTCGACCCAA 59.828 45.455 0.00 0.00 34.02 4.12
92 93 1.766496 ACCAAAGAAGAGTTCGACCCA 59.234 47.619 0.00 0.00 34.02 4.51
93 94 2.143925 CACCAAAGAAGAGTTCGACCC 58.856 52.381 0.00 0.00 34.02 4.46
94 95 2.835027 ACACCAAAGAAGAGTTCGACC 58.165 47.619 0.00 0.00 34.02 4.79
95 96 5.050295 CCTTAACACCAAAGAAGAGTTCGAC 60.050 44.000 0.00 0.00 34.02 4.20
96 97 5.054477 CCTTAACACCAAAGAAGAGTTCGA 58.946 41.667 0.00 0.00 34.02 3.71
97 98 4.814771 ACCTTAACACCAAAGAAGAGTTCG 59.185 41.667 0.00 0.00 34.02 3.95
98 99 5.008712 CCACCTTAACACCAAAGAAGAGTTC 59.991 44.000 0.00 0.00 0.00 3.01
99 100 4.887655 CCACCTTAACACCAAAGAAGAGTT 59.112 41.667 0.00 0.00 0.00 3.01
100 101 4.079958 ACCACCTTAACACCAAAGAAGAGT 60.080 41.667 0.00 0.00 0.00 3.24
101 102 4.461198 ACCACCTTAACACCAAAGAAGAG 58.539 43.478 0.00 0.00 0.00 2.85
102 103 4.513406 ACCACCTTAACACCAAAGAAGA 57.487 40.909 0.00 0.00 0.00 2.87
103 104 4.215613 GCTACCACCTTAACACCAAAGAAG 59.784 45.833 0.00 0.00 0.00 2.85
104 105 4.139038 GCTACCACCTTAACACCAAAGAA 58.861 43.478 0.00 0.00 0.00 2.52
105 106 3.393278 AGCTACCACCTTAACACCAAAGA 59.607 43.478 0.00 0.00 0.00 2.52
106 107 3.502211 CAGCTACCACCTTAACACCAAAG 59.498 47.826 0.00 0.00 0.00 2.77
107 108 3.117813 ACAGCTACCACCTTAACACCAAA 60.118 43.478 0.00 0.00 0.00 3.28
108 109 2.440253 ACAGCTACCACCTTAACACCAA 59.560 45.455 0.00 0.00 0.00 3.67
109 110 2.051692 ACAGCTACCACCTTAACACCA 58.948 47.619 0.00 0.00 0.00 4.17
110 111 2.038033 TCACAGCTACCACCTTAACACC 59.962 50.000 0.00 0.00 0.00 4.16
111 112 3.396260 TCACAGCTACCACCTTAACAC 57.604 47.619 0.00 0.00 0.00 3.32
112 113 4.634012 ATTCACAGCTACCACCTTAACA 57.366 40.909 0.00 0.00 0.00 2.41
113 114 4.571176 GCTATTCACAGCTACCACCTTAAC 59.429 45.833 0.00 0.00 38.57 2.01
114 115 4.383770 GGCTATTCACAGCTACCACCTTAA 60.384 45.833 0.00 0.00 41.50 1.85
115 116 3.134081 GGCTATTCACAGCTACCACCTTA 59.866 47.826 0.00 0.00 41.50 2.69
116 117 2.092914 GGCTATTCACAGCTACCACCTT 60.093 50.000 0.00 0.00 41.50 3.50
117 118 1.486726 GGCTATTCACAGCTACCACCT 59.513 52.381 0.00 0.00 41.50 4.00
118 119 1.209504 TGGCTATTCACAGCTACCACC 59.790 52.381 0.00 0.00 41.50 4.61
119 120 2.691409 TGGCTATTCACAGCTACCAC 57.309 50.000 0.00 0.00 41.50 4.16
120 121 2.224042 CGATGGCTATTCACAGCTACCA 60.224 50.000 0.00 0.00 41.50 3.25
121 122 2.035961 TCGATGGCTATTCACAGCTACC 59.964 50.000 0.00 0.00 41.50 3.18
122 123 3.053455 GTCGATGGCTATTCACAGCTAC 58.947 50.000 0.00 0.00 41.50 3.58
123 124 2.959030 AGTCGATGGCTATTCACAGCTA 59.041 45.455 0.00 0.00 41.50 3.32
124 125 1.759445 AGTCGATGGCTATTCACAGCT 59.241 47.619 0.00 0.00 41.50 4.24
125 126 2.231215 AGTCGATGGCTATTCACAGC 57.769 50.000 0.00 0.00 41.02 4.40
126 127 3.731216 CGTTAGTCGATGGCTATTCACAG 59.269 47.826 0.00 0.00 42.86 3.66
127 128 3.379057 TCGTTAGTCGATGGCTATTCACA 59.621 43.478 0.00 0.00 44.01 3.58
128 129 3.961182 TCGTTAGTCGATGGCTATTCAC 58.039 45.455 0.00 0.00 44.01 3.18
152 153 0.946528 GTTGCGTCCGTACCCTTTTT 59.053 50.000 0.00 0.00 0.00 1.94
153 154 1.223417 CGTTGCGTCCGTACCCTTTT 61.223 55.000 0.00 0.00 0.00 2.27
157 158 0.665972 TTAACGTTGCGTCCGTACCC 60.666 55.000 11.99 0.00 39.99 3.69
196 197 1.646189 GTGAGCGATCCTCCTTTCAC 58.354 55.000 0.00 0.00 39.98 3.18
199 200 1.627297 GGGGTGAGCGATCCTCCTTT 61.627 60.000 10.83 0.00 39.98 3.11
250 257 4.305769 GTTTCTGATCTGGATCTGATCGG 58.694 47.826 21.45 21.45 42.62 4.18
251 258 4.202192 TGGTTTCTGATCTGGATCTGATCG 60.202 45.833 16.76 14.12 42.62 3.69
256 268 3.184628 TGGTGGTTTCTGATCTGGATCT 58.815 45.455 11.23 0.00 38.60 2.75
904 917 2.279784 GCCTGCTAGCTGCTACCG 60.280 66.667 17.23 3.46 43.37 4.02
905 918 2.279784 CGCCTGCTAGCTGCTACC 60.280 66.667 21.86 0.00 43.37 3.18
906 919 2.279784 CCGCCTGCTAGCTGCTAC 60.280 66.667 21.86 11.18 43.37 3.58
907 920 4.227134 GCCGCCTGCTAGCTGCTA 62.227 66.667 21.86 9.34 43.37 3.49
968 981 1.306654 AGTTATCACCTCCCGCCCA 60.307 57.895 0.00 0.00 0.00 5.36
1330 1464 8.454106 CAAGTCCAAACCTACATATTTTCTCAG 58.546 37.037 0.00 0.00 0.00 3.35
1358 1503 3.521560 TGTACTGAAATCGCCACTCATC 58.478 45.455 0.00 0.00 0.00 2.92
1373 1518 2.221169 TGCAAGAGCCAACTTGTACTG 58.779 47.619 14.30 0.00 45.98 2.74
1402 1547 4.278170 TCAGCCATTAGTTTTTGGACAGTG 59.722 41.667 0.00 0.00 34.81 3.66
1411 1556 3.265479 AGGAGCTCTCAGCCATTAGTTTT 59.735 43.478 14.64 0.00 43.77 2.43
1430 1575 1.387737 CCCAATTTGGCCCTGAGGA 59.612 57.895 10.10 0.00 35.79 3.71
1456 1601 1.531365 ACCCACACCACATGGCTTG 60.531 57.895 0.00 0.00 39.32 4.01
1458 1603 2.115910 CACCCACACCACATGGCT 59.884 61.111 0.00 0.00 39.32 4.75
1641 1874 1.070758 AGCGCTTGTAATCCCATCGAT 59.929 47.619 2.64 0.00 0.00 3.59
1674 1907 3.303593 CGTATCCATCAAGACATGCAAGC 60.304 47.826 0.00 0.00 0.00 4.01
1749 1982 2.526888 TCATTACCCAGTCTCCGACT 57.473 50.000 0.00 0.00 44.44 4.18
1782 2015 2.431782 ACACTGCATGGCAAAGAGTTTT 59.568 40.909 0.00 0.00 38.41 2.43
1859 2096 8.736742 CGAATGTTAGTTCATGATAAACAATGC 58.263 33.333 17.00 10.87 34.08 3.56
1960 2197 0.525761 TCAGCACGCAAAATAAGCCC 59.474 50.000 0.00 0.00 0.00 5.19
2015 2252 6.691255 ACAGGACCATTAACCTAGTAAACA 57.309 37.500 0.00 0.00 34.87 2.83
2031 2268 6.542735 GGGAATAATTGAACTAGAACAGGACC 59.457 42.308 0.00 0.00 0.00 4.46
2045 2282 2.443255 GGCAGAGGGAGGGAATAATTGA 59.557 50.000 0.00 0.00 0.00 2.57
2046 2283 2.489802 GGGCAGAGGGAGGGAATAATTG 60.490 54.545 0.00 0.00 0.00 2.32
2065 2302 0.179048 TGCATGTATCTTGAGCGGGG 60.179 55.000 0.00 0.00 0.00 5.73
2107 2349 3.560896 TGCTGTAGTTTAAACGTCAACCC 59.439 43.478 12.54 7.77 0.00 4.11
2110 2352 5.178623 CCATCTGCTGTAGTTTAAACGTCAA 59.821 40.000 12.54 2.51 0.00 3.18
2121 2363 1.604378 GGCACCCATCTGCTGTAGT 59.396 57.895 0.00 0.00 37.33 2.73
2186 2438 7.754625 TCAACAGAAAGTACAACACCTTAAAC 58.245 34.615 0.00 0.00 0.00 2.01
2191 2443 5.099042 ACTCAACAGAAAGTACAACACCT 57.901 39.130 0.00 0.00 0.00 4.00
2280 2533 6.000219 AGTATAACCATTCAGCTAATGCCAG 59.000 40.000 9.23 2.05 43.18 4.85
2316 2575 9.225436 TGTATGACATGCACAGATAAGTTTTTA 57.775 29.630 1.64 0.00 0.00 1.52
2384 2644 4.709397 ACACAAAGTTGTCCAAATGAAGGA 59.291 37.500 0.00 0.00 39.91 3.36
2399 2659 4.079253 ACACTGAACAAGGAACACAAAGT 58.921 39.130 0.00 0.00 0.00 2.66
2440 2703 0.940126 CTGCATCGCATAGTTGGGTC 59.060 55.000 0.00 0.00 38.13 4.46
2801 3064 2.645838 ATGCGCTCCATGGAGTTTAT 57.354 45.000 36.32 25.40 43.70 1.40
2831 3096 6.208994 ACTTATATTTAGCACGGAGGGAGTAG 59.791 42.308 0.00 0.00 0.00 2.57
2832 3097 6.073314 ACTTATATTTAGCACGGAGGGAGTA 58.927 40.000 0.00 0.00 0.00 2.59
2833 3098 4.900054 ACTTATATTTAGCACGGAGGGAGT 59.100 41.667 0.00 0.00 0.00 3.85
2834 3099 5.244178 AGACTTATATTTAGCACGGAGGGAG 59.756 44.000 0.00 0.00 0.00 4.30
2835 3100 5.145564 AGACTTATATTTAGCACGGAGGGA 58.854 41.667 0.00 0.00 0.00 4.20
2836 3101 5.470047 AGACTTATATTTAGCACGGAGGG 57.530 43.478 0.00 0.00 0.00 4.30
2837 3102 7.494625 TGAAAAGACTTATATTTAGCACGGAGG 59.505 37.037 0.00 0.00 0.00 4.30
2838 3103 8.420374 TGAAAAGACTTATATTTAGCACGGAG 57.580 34.615 0.00 0.00 0.00 4.63
2839 3104 8.255206 TCTGAAAAGACTTATATTTAGCACGGA 58.745 33.333 0.00 0.00 0.00 4.69
2840 3105 8.420374 TCTGAAAAGACTTATATTTAGCACGG 57.580 34.615 0.00 0.00 0.00 4.94
2841 3106 9.302345 TCTCTGAAAAGACTTATATTTAGCACG 57.698 33.333 0.00 0.00 0.00 5.34
2851 3116 9.898152 CCTAGGAAAATCTCTGAAAAGACTTAT 57.102 33.333 1.05 0.00 0.00 1.73
2852 3117 8.322091 CCCTAGGAAAATCTCTGAAAAGACTTA 58.678 37.037 11.48 0.00 0.00 2.24
2853 3118 7.017651 TCCCTAGGAAAATCTCTGAAAAGACTT 59.982 37.037 11.48 0.00 0.00 3.01
2854 3119 6.502158 TCCCTAGGAAAATCTCTGAAAAGACT 59.498 38.462 11.48 0.00 0.00 3.24
2855 3120 6.596106 GTCCCTAGGAAAATCTCTGAAAAGAC 59.404 42.308 11.48 0.00 31.38 3.01
2856 3121 6.502158 AGTCCCTAGGAAAATCTCTGAAAAGA 59.498 38.462 11.48 0.00 31.38 2.52
2857 3122 6.716284 AGTCCCTAGGAAAATCTCTGAAAAG 58.284 40.000 11.48 0.00 31.38 2.27
2858 3123 6.704056 AGTCCCTAGGAAAATCTCTGAAAA 57.296 37.500 11.48 0.00 31.38 2.29
2859 3124 6.729100 TGTAGTCCCTAGGAAAATCTCTGAAA 59.271 38.462 11.48 0.00 31.38 2.69
2860 3125 6.261435 TGTAGTCCCTAGGAAAATCTCTGAA 58.739 40.000 11.48 0.00 31.38 3.02
2861 3126 5.838955 TGTAGTCCCTAGGAAAATCTCTGA 58.161 41.667 11.48 0.00 31.38 3.27
2862 3127 6.739331 ATGTAGTCCCTAGGAAAATCTCTG 57.261 41.667 11.48 0.00 31.38 3.35
2863 3128 6.490721 CGTATGTAGTCCCTAGGAAAATCTCT 59.509 42.308 11.48 0.45 31.38 3.10
2864 3129 6.294620 CCGTATGTAGTCCCTAGGAAAATCTC 60.295 46.154 11.48 0.00 31.38 2.75
2865 3130 5.539193 CCGTATGTAGTCCCTAGGAAAATCT 59.461 44.000 11.48 3.58 31.38 2.40
2866 3131 5.537674 TCCGTATGTAGTCCCTAGGAAAATC 59.462 44.000 11.48 0.00 31.38 2.17
2867 3132 5.461327 TCCGTATGTAGTCCCTAGGAAAAT 58.539 41.667 11.48 0.00 31.38 1.82
2868 3133 4.870636 TCCGTATGTAGTCCCTAGGAAAA 58.129 43.478 11.48 0.00 31.38 2.29
2869 3134 4.524802 TCCGTATGTAGTCCCTAGGAAA 57.475 45.455 11.48 0.00 31.38 3.13
2870 3135 4.404640 CATCCGTATGTAGTCCCTAGGAA 58.595 47.826 11.48 0.00 31.38 3.36
2871 3136 3.245158 CCATCCGTATGTAGTCCCTAGGA 60.245 52.174 11.48 0.00 0.00 2.94
2872 3137 3.090037 CCATCCGTATGTAGTCCCTAGG 58.910 54.545 0.06 0.06 0.00 3.02
2873 3138 4.030314 TCCATCCGTATGTAGTCCCTAG 57.970 50.000 0.00 0.00 0.00 3.02
2874 3139 4.669866 ATCCATCCGTATGTAGTCCCTA 57.330 45.455 0.00 0.00 0.00 3.53
2875 3140 3.544698 ATCCATCCGTATGTAGTCCCT 57.455 47.619 0.00 0.00 0.00 4.20
2876 3141 5.535406 CCTATATCCATCCGTATGTAGTCCC 59.465 48.000 0.00 0.00 0.00 4.46
2877 3142 5.009811 GCCTATATCCATCCGTATGTAGTCC 59.990 48.000 0.00 0.00 0.00 3.85
2878 3143 5.593095 TGCCTATATCCATCCGTATGTAGTC 59.407 44.000 0.00 0.00 0.00 2.59
2879 3144 5.516044 TGCCTATATCCATCCGTATGTAGT 58.484 41.667 0.00 0.00 0.00 2.73
2880 3145 6.656632 ATGCCTATATCCATCCGTATGTAG 57.343 41.667 0.00 0.00 0.00 2.74
2881 3146 8.721133 AATATGCCTATATCCATCCGTATGTA 57.279 34.615 0.00 0.00 0.00 2.29
2882 3147 7.618019 AATATGCCTATATCCATCCGTATGT 57.382 36.000 0.00 0.00 0.00 2.29
2883 3148 8.908786 AAAATATGCCTATATCCATCCGTATG 57.091 34.615 0.00 0.00 0.00 2.39
2885 3150 9.429109 TCTAAAATATGCCTATATCCATCCGTA 57.571 33.333 0.00 0.00 0.00 4.02
2886 3151 8.319057 TCTAAAATATGCCTATATCCATCCGT 57.681 34.615 0.00 0.00 0.00 4.69
2887 3152 8.642432 TCTCTAAAATATGCCTATATCCATCCG 58.358 37.037 0.00 0.00 0.00 4.18
2888 3153 9.995003 CTCTCTAAAATATGCCTATATCCATCC 57.005 37.037 0.00 0.00 0.00 3.51
2898 3163 9.153479 AGTGAATCTACTCTCTAAAATATGCCT 57.847 33.333 0.00 0.00 0.00 4.75
2899 3164 9.418045 GAGTGAATCTACTCTCTAAAATATGCC 57.582 37.037 0.00 0.00 42.93 4.40
2900 3165 9.973450 TGAGTGAATCTACTCTCTAAAATATGC 57.027 33.333 11.86 0.00 45.70 3.14
2906 3171 9.155975 GCAAAATGAGTGAATCTACTCTCTAAA 57.844 33.333 11.86 0.00 45.70 1.85
2907 3172 8.535335 AGCAAAATGAGTGAATCTACTCTCTAA 58.465 33.333 11.86 0.00 45.70 2.10
2908 3173 8.072321 AGCAAAATGAGTGAATCTACTCTCTA 57.928 34.615 11.86 0.00 45.70 2.43
2909 3174 6.945218 AGCAAAATGAGTGAATCTACTCTCT 58.055 36.000 11.86 0.00 45.70 3.10
2910 3175 6.257630 GGAGCAAAATGAGTGAATCTACTCTC 59.742 42.308 11.86 0.00 45.70 3.20
2911 3176 6.112058 GGAGCAAAATGAGTGAATCTACTCT 58.888 40.000 11.86 0.00 45.70 3.24
2912 3177 5.006165 CGGAGCAAAATGAGTGAATCTACTC 59.994 44.000 0.00 0.00 45.71 2.59
2913 3178 4.872691 CGGAGCAAAATGAGTGAATCTACT 59.127 41.667 0.00 0.00 0.00 2.57
2914 3179 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2915 3180 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2916 3181 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2917 3182 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2918 3183 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2919 3184 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2920 3185 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2921 3186 5.991328 ATACATACGGAGCAAAATGAGTG 57.009 39.130 0.00 0.00 0.00 3.51
2922 3187 5.527582 GGAATACATACGGAGCAAAATGAGT 59.472 40.000 0.00 0.00 0.00 3.41
2923 3188 5.527214 TGGAATACATACGGAGCAAAATGAG 59.473 40.000 0.00 0.00 0.00 2.90
2924 3189 5.432645 TGGAATACATACGGAGCAAAATGA 58.567 37.500 0.00 0.00 0.00 2.57
2925 3190 5.749596 TGGAATACATACGGAGCAAAATG 57.250 39.130 0.00 0.00 0.00 2.32
2926 3191 8.514594 CAATATGGAATACATACGGAGCAAAAT 58.485 33.333 0.00 0.00 44.41 1.82
2927 3192 7.040755 CCAATATGGAATACATACGGAGCAAAA 60.041 37.037 0.00 0.00 44.41 2.44
2928 3193 6.429692 CCAATATGGAATACATACGGAGCAAA 59.570 38.462 0.00 0.00 44.41 3.68
2929 3194 5.937540 CCAATATGGAATACATACGGAGCAA 59.062 40.000 0.00 0.00 44.41 3.91
2930 3195 5.247337 TCCAATATGGAATACATACGGAGCA 59.753 40.000 2.22 0.00 45.00 4.26
2931 3196 5.730550 TCCAATATGGAATACATACGGAGC 58.269 41.667 2.22 0.00 45.00 4.70
2945 3210 8.986929 AAGTCCTTTTAGAGAATCCAATATGG 57.013 34.615 0.00 0.00 39.43 2.74
2973 3238 9.712305 CGAGTAATACTTCATCCATTCCTAAAT 57.288 33.333 0.00 0.00 0.00 1.40
2974 3239 7.656137 GCGAGTAATACTTCATCCATTCCTAAA 59.344 37.037 0.00 0.00 0.00 1.85
2975 3240 7.015292 AGCGAGTAATACTTCATCCATTCCTAA 59.985 37.037 0.00 0.00 0.00 2.69
2976 3241 6.493802 AGCGAGTAATACTTCATCCATTCCTA 59.506 38.462 0.00 0.00 0.00 2.94
2977 3242 5.305644 AGCGAGTAATACTTCATCCATTCCT 59.694 40.000 0.00 0.00 0.00 3.36
2978 3243 5.406780 CAGCGAGTAATACTTCATCCATTCC 59.593 44.000 0.00 0.00 0.00 3.01
2979 3244 5.406780 CCAGCGAGTAATACTTCATCCATTC 59.593 44.000 0.00 0.00 0.00 2.67
2980 3245 5.070446 TCCAGCGAGTAATACTTCATCCATT 59.930 40.000 0.00 0.00 0.00 3.16
2981 3246 4.588951 TCCAGCGAGTAATACTTCATCCAT 59.411 41.667 0.00 0.00 0.00 3.41
2982 3247 3.958147 TCCAGCGAGTAATACTTCATCCA 59.042 43.478 0.00 0.00 0.00 3.41
2983 3248 4.585955 TCCAGCGAGTAATACTTCATCC 57.414 45.455 0.00 0.00 0.00 3.51
2984 3249 4.446051 GCTTCCAGCGAGTAATACTTCATC 59.554 45.833 0.00 0.00 0.00 2.92
2985 3250 4.372656 GCTTCCAGCGAGTAATACTTCAT 58.627 43.478 0.00 0.00 0.00 2.57
2986 3251 3.782046 GCTTCCAGCGAGTAATACTTCA 58.218 45.455 0.00 0.00 0.00 3.02
3069 3334 8.839343 GGTACTAGTATCACCTTAGAGAAGAAC 58.161 40.741 8.35 0.00 34.25 3.01
3088 3354 5.213675 GCAACGCTAAGACTATGGTACTAG 58.786 45.833 0.00 0.00 0.00 2.57
3089 3355 4.641541 TGCAACGCTAAGACTATGGTACTA 59.358 41.667 0.00 0.00 0.00 1.82
3090 3356 3.446161 TGCAACGCTAAGACTATGGTACT 59.554 43.478 0.00 0.00 0.00 2.73
3132 3398 6.066032 CCCAAAACTACAAAGGAAGGAACTA 58.934 40.000 0.00 0.00 38.49 2.24
3137 3403 5.076873 TCATCCCAAAACTACAAAGGAAGG 58.923 41.667 0.00 0.00 0.00 3.46
3190 3456 1.186917 TCCCCGACTCGGCTAAAACA 61.187 55.000 12.37 0.00 46.86 2.83
3234 3500 5.116074 CAGATTCTTTGTGTTCATTCGCAAC 59.884 40.000 0.00 0.00 37.51 4.17
3235 3501 5.214417 CAGATTCTTTGTGTTCATTCGCAA 58.786 37.500 0.00 0.00 36.28 4.85
3237 3503 4.614284 CACAGATTCTTTGTGTTCATTCGC 59.386 41.667 0.00 0.00 40.73 4.70
3287 3686 4.215613 ACTTTGATTCTTTACAACGGAGCC 59.784 41.667 0.00 0.00 0.00 4.70
3338 3737 3.535561 AGCAGTCGGACTATTGAAATGG 58.464 45.455 10.87 0.00 0.00 3.16
3373 3772 2.560105 ACGGTGTTCCAGGTAGAGTTAC 59.440 50.000 0.00 0.00 0.00 2.50
3386 3785 3.059120 GCCTGACTTCTTTAACGGTGTTC 60.059 47.826 0.00 0.00 0.00 3.18
3414 3813 9.988350 ATGAAATTCGTACACATTTGTAATCTC 57.012 29.630 4.38 0.00 40.00 2.75
3424 3823 4.436852 GGCGTTGATGAAATTCGTACACAT 60.437 41.667 0.00 0.00 0.00 3.21
3464 3863 1.885233 TCAGATGATCTAGAGGCGCAG 59.115 52.381 10.83 0.00 0.00 5.18
3465 3864 1.986882 TCAGATGATCTAGAGGCGCA 58.013 50.000 10.83 0.00 0.00 6.09
3468 3867 5.221601 TGTTCCATTCAGATGATCTAGAGGC 60.222 44.000 0.00 0.00 35.16 4.70
3491 3891 3.870274 TCCTTGACTTCTCATGCAGATG 58.130 45.455 0.00 0.00 33.32 2.90
3566 4025 2.093394 TCGATATCCCCGCAAAAACAGA 60.093 45.455 0.00 0.00 0.00 3.41
3591 4050 9.352784 CGCCTGAATTTCATCTTTGTTAAATTA 57.647 29.630 0.00 0.00 33.03 1.40
3622 4081 1.289066 CACACGGACTCACGGACAT 59.711 57.895 0.00 0.00 38.39 3.06
3637 4096 0.321564 CAGTTCATCTTCCGCCCACA 60.322 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.