Multiple sequence alignment - TraesCS1D01G281400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G281400 chr1D 100.000 3085 0 0 2313 5397 379484473 379481389 0.000000e+00 5698.0
1 TraesCS1D01G281400 chr1D 100.000 1941 0 0 1 1941 379486785 379484845 0.000000e+00 3585.0
2 TraesCS1D01G281400 chr1A 90.675 1555 94 23 3773 5299 480578854 480577323 0.000000e+00 2021.0
3 TraesCS1D01G281400 chr1A 87.961 1653 112 29 254 1862 480582328 480580719 0.000000e+00 1869.0
4 TraesCS1D01G281400 chr1A 93.731 654 30 4 2313 2964 480580593 480579949 0.000000e+00 970.0
5 TraesCS1D01G281400 chr1A 87.080 387 44 4 3363 3743 480579489 480579103 2.990000e-117 433.0
6 TraesCS1D01G281400 chr1A 92.593 270 20 0 3097 3366 480579959 480579690 6.560000e-104 388.0
7 TraesCS1D01G281400 chr1A 92.414 145 10 1 2954 3097 540669227 540669371 7.090000e-49 206.0
8 TraesCS1D01G281400 chr1A 91.111 135 10 2 2965 3098 335028292 335028425 1.190000e-41 182.0
9 TraesCS1D01G281400 chr1A 82.192 146 19 4 1382 1527 589440621 589440759 9.500000e-23 119.0
10 TraesCS1D01G281400 chr1A 93.478 46 3 0 1863 1908 57307290 57307245 9.700000e-08 69.4
11 TraesCS1D01G281400 chr1B 91.297 1149 63 13 613 1733 508672901 508671762 0.000000e+00 1533.0
12 TraesCS1D01G281400 chr1B 92.099 886 41 7 3915 4783 508669491 508668618 0.000000e+00 1221.0
13 TraesCS1D01G281400 chr1B 93.083 665 33 5 3105 3756 508670524 508669860 0.000000e+00 961.0
14 TraesCS1D01G281400 chr1B 91.859 651 34 6 2313 2955 508671164 508670525 0.000000e+00 891.0
15 TraesCS1D01G281400 chr1B 88.522 575 31 7 4857 5397 508574155 508573582 0.000000e+00 664.0
16 TraesCS1D01G281400 chr1B 88.971 136 11 3 1731 1863 508671479 508671345 1.200000e-36 165.0
17 TraesCS1D01G281400 chr1B 74.504 353 57 21 1386 1723 683572954 683573288 7.340000e-24 122.0
18 TraesCS1D01G281400 chr1B 97.436 39 1 0 4804 4842 508668094 508668056 3.490000e-07 67.6
19 TraesCS1D01G281400 chr3B 94.074 135 8 0 2963 3097 397669064 397669198 7.090000e-49 206.0
20 TraesCS1D01G281400 chr3B 86.667 60 6 2 1853 1911 790348323 790348381 1.250000e-06 65.8
21 TraesCS1D01G281400 chr3B 88.679 53 4 2 1857 1908 477883462 477883411 4.510000e-06 63.9
22 TraesCS1D01G281400 chr5B 93.284 134 9 0 2965 3098 34915969 34915836 1.190000e-46 198.0
23 TraesCS1D01G281400 chr5B 92.647 136 10 0 2962 3097 687201132 687200997 4.260000e-46 196.0
24 TraesCS1D01G281400 chr5B 81.379 145 21 3 1386 1530 298688819 298688681 4.420000e-21 113.0
25 TraesCS1D01G281400 chr6B 93.233 133 9 0 2965 3097 21321955 21321823 4.260000e-46 196.0
26 TraesCS1D01G281400 chr2A 92.537 134 10 0 2965 3098 657106846 657106713 5.520000e-45 193.0
27 TraesCS1D01G281400 chr6D 92.537 134 9 1 2965 3097 457067999 457067866 1.980000e-44 191.0
28 TraesCS1D01G281400 chr6D 91.837 49 4 0 1860 1908 228929647 228929599 9.700000e-08 69.4
29 TraesCS1D01G281400 chr6A 91.971 137 6 3 2965 3097 420832630 420832765 2.570000e-43 187.0
30 TraesCS1D01G281400 chr6A 85.714 63 7 2 1860 1922 465607911 465607851 1.250000e-06 65.8
31 TraesCS1D01G281400 chr4A 82.069 145 20 3 1386 1530 340789846 340789984 9.500000e-23 119.0
32 TraesCS1D01G281400 chr5D 80.690 145 22 3 1386 1530 449435764 449435626 2.060000e-19 108.0
33 TraesCS1D01G281400 chr5D 80.282 142 22 3 1386 1527 369533761 369533896 9.560000e-18 102.0
34 TraesCS1D01G281400 chr5D 80.282 142 22 3 1389 1530 434898409 434898274 9.560000e-18 102.0
35 TraesCS1D01G281400 chr5D 93.478 46 3 0 1860 1905 529824752 529824707 9.700000e-08 69.4
36 TraesCS1D01G281400 chr7B 93.478 46 3 0 1857 1902 153744682 153744727 9.700000e-08 69.4
37 TraesCS1D01G281400 chr3A 91.837 49 4 0 1860 1908 8697966 8697918 9.700000e-08 69.4
38 TraesCS1D01G281400 chr3D 84.615 65 8 2 1853 1917 86237917 86237855 4.510000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G281400 chr1D 379481389 379486785 5396 True 4641.500000 5698 100.0000 1 5397 2 chr1D.!!$R1 5396
1 TraesCS1D01G281400 chr1A 480577323 480582328 5005 True 1136.200000 2021 90.4080 254 5299 5 chr1A.!!$R2 5045
2 TraesCS1D01G281400 chr1B 508668056 508672901 4845 True 806.433333 1533 92.4575 613 4842 6 chr1B.!!$R2 4229
3 TraesCS1D01G281400 chr1B 508573582 508574155 573 True 664.000000 664 88.5220 4857 5397 1 chr1B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 474 0.171007 CGGGCACATTGCTTTACAGG 59.829 55.0 0.00 0.00 44.28 4.00 F
652 654 0.179004 TTCGGCTTTCACACCCACAT 60.179 50.0 0.00 0.00 0.00 3.21 F
1686 1727 0.249120 TGTCGCGGATCACCAAGATT 59.751 50.0 6.13 0.00 37.00 2.40 F
1911 2288 0.695924 TTGGGACGGATGGTGTCAAT 59.304 50.0 0.00 0.00 38.10 2.57 F
1931 2308 0.899720 TAGTAGTGGTTTGGGGCTCG 59.100 55.0 0.00 0.00 0.00 5.03 F
3027 3414 0.035176 ACACCCACCAAAATGCATGC 59.965 50.0 11.82 11.82 0.00 4.06 F
3028 3415 0.322322 CACCCACCAAAATGCATGCT 59.678 50.0 20.33 1.07 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1623 0.516877 CTGCACGAAAATCGAAGGCA 59.483 50.000 6.78 11.35 43.74 4.75 R
1911 2288 1.276989 CGAGCCCCAAACCACTACTAA 59.723 52.381 0.00 0.00 0.00 2.24 R
3008 3395 0.035176 GCATGCATTTTGGTGGGTGT 59.965 50.000 14.21 0.00 0.00 4.16 R
3009 3396 0.322322 AGCATGCATTTTGGTGGGTG 59.678 50.000 21.98 0.00 0.00 4.61 R
3749 4354 1.004277 TGGGTGTCACCTAATGGCTTC 59.996 52.381 21.40 2.27 38.64 3.86 R
4229 5236 0.963962 ACTGCAACCCAAGCAATGAG 59.036 50.000 0.00 0.00 42.17 2.90 R
5018 6557 1.915078 ATGCGTTTGGAGGCTAGGCT 61.915 55.000 20.36 20.36 37.54 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.757897 AGTGTGTGAAAAGTTGAATCTCAA 57.242 33.333 0.00 0.00 33.32 3.02
25 26 7.338800 AGTGTGTGAAAAGTTGAATCTCAAT 57.661 32.000 0.00 0.00 38.79 2.57
26 27 7.198390 AGTGTGTGAAAAGTTGAATCTCAATG 58.802 34.615 0.00 0.00 38.79 2.82
27 28 6.418819 GTGTGTGAAAAGTTGAATCTCAATGG 59.581 38.462 0.00 0.00 38.79 3.16
28 29 6.096705 TGTGTGAAAAGTTGAATCTCAATGGT 59.903 34.615 0.00 0.00 38.79 3.55
29 30 6.638468 GTGTGAAAAGTTGAATCTCAATGGTC 59.362 38.462 0.00 0.00 38.79 4.02
30 31 6.547141 TGTGAAAAGTTGAATCTCAATGGTCT 59.453 34.615 0.00 0.00 38.79 3.85
31 32 7.719193 TGTGAAAAGTTGAATCTCAATGGTCTA 59.281 33.333 0.00 0.00 38.79 2.59
32 33 8.233190 GTGAAAAGTTGAATCTCAATGGTCTAG 58.767 37.037 0.00 0.00 38.79 2.43
33 34 8.156820 TGAAAAGTTGAATCTCAATGGTCTAGA 58.843 33.333 0.00 0.00 38.79 2.43
34 35 9.171877 GAAAAGTTGAATCTCAATGGTCTAGAT 57.828 33.333 0.00 0.00 38.79 1.98
35 36 9.525826 AAAAGTTGAATCTCAATGGTCTAGATT 57.474 29.630 0.00 0.00 41.48 2.40
36 37 9.525826 AAAGTTGAATCTCAATGGTCTAGATTT 57.474 29.630 0.00 0.00 39.46 2.17
37 38 9.525826 AAGTTGAATCTCAATGGTCTAGATTTT 57.474 29.630 0.00 0.00 39.46 1.82
40 41 8.668510 TGAATCTCAATGGTCTAGATTTTAGC 57.331 34.615 0.00 0.00 39.46 3.09
41 42 8.267183 TGAATCTCAATGGTCTAGATTTTAGCA 58.733 33.333 0.00 0.00 39.46 3.49
42 43 9.282569 GAATCTCAATGGTCTAGATTTTAGCAT 57.717 33.333 0.00 0.00 39.46 3.79
43 44 8.845413 ATCTCAATGGTCTAGATTTTAGCATC 57.155 34.615 0.00 0.00 31.35 3.91
44 45 7.795047 TCTCAATGGTCTAGATTTTAGCATCA 58.205 34.615 0.00 0.00 31.35 3.07
45 46 8.435187 TCTCAATGGTCTAGATTTTAGCATCAT 58.565 33.333 0.00 0.00 31.35 2.45
46 47 9.716531 CTCAATGGTCTAGATTTTAGCATCATA 57.283 33.333 0.00 0.00 31.35 2.15
49 50 9.458727 AATGGTCTAGATTTTAGCATCATATGG 57.541 33.333 2.13 0.00 31.35 2.74
50 51 7.397221 TGGTCTAGATTTTAGCATCATATGGG 58.603 38.462 2.13 0.00 0.00 4.00
51 52 6.317391 GGTCTAGATTTTAGCATCATATGGGC 59.683 42.308 2.13 7.48 0.00 5.36
52 53 6.317391 GTCTAGATTTTAGCATCATATGGGCC 59.683 42.308 14.20 0.00 0.00 5.80
53 54 5.001833 AGATTTTAGCATCATATGGGCCA 57.998 39.130 9.61 9.61 0.00 5.36
54 55 5.014858 AGATTTTAGCATCATATGGGCCAG 58.985 41.667 13.78 0.00 0.00 4.85
55 56 2.885135 TTAGCATCATATGGGCCAGG 57.115 50.000 13.78 4.13 0.00 4.45
56 57 1.746157 TAGCATCATATGGGCCAGGT 58.254 50.000 13.78 5.16 0.00 4.00
57 58 0.855598 AGCATCATATGGGCCAGGTT 59.144 50.000 13.78 0.00 0.00 3.50
58 59 1.218704 AGCATCATATGGGCCAGGTTT 59.781 47.619 13.78 0.00 0.00 3.27
59 60 1.615392 GCATCATATGGGCCAGGTTTC 59.385 52.381 13.78 0.00 0.00 2.78
60 61 2.948115 CATCATATGGGCCAGGTTTCA 58.052 47.619 13.78 0.00 0.00 2.69
61 62 3.298619 CATCATATGGGCCAGGTTTCAA 58.701 45.455 13.78 0.00 0.00 2.69
62 63 3.464720 TCATATGGGCCAGGTTTCAAA 57.535 42.857 13.78 0.00 0.00 2.69
63 64 3.784178 TCATATGGGCCAGGTTTCAAAA 58.216 40.909 13.78 0.00 0.00 2.44
64 65 4.360889 TCATATGGGCCAGGTTTCAAAAT 58.639 39.130 13.78 0.00 0.00 1.82
65 66 4.782156 TCATATGGGCCAGGTTTCAAAATT 59.218 37.500 13.78 0.00 0.00 1.82
66 67 3.701205 ATGGGCCAGGTTTCAAAATTC 57.299 42.857 13.78 0.00 0.00 2.17
67 68 1.696884 TGGGCCAGGTTTCAAAATTCC 59.303 47.619 0.00 0.00 0.00 3.01
68 69 1.696884 GGGCCAGGTTTCAAAATTCCA 59.303 47.619 4.39 0.00 0.00 3.53
69 70 2.305635 GGGCCAGGTTTCAAAATTCCAT 59.694 45.455 4.39 0.00 0.00 3.41
70 71 3.244875 GGGCCAGGTTTCAAAATTCCATT 60.245 43.478 4.39 0.00 0.00 3.16
71 72 4.397420 GGCCAGGTTTCAAAATTCCATTT 58.603 39.130 0.00 0.00 0.00 2.32
72 73 4.826733 GGCCAGGTTTCAAAATTCCATTTT 59.173 37.500 0.00 0.00 42.81 1.82
73 74 6.000840 GGCCAGGTTTCAAAATTCCATTTTA 58.999 36.000 0.00 0.00 40.27 1.52
74 75 6.658816 GGCCAGGTTTCAAAATTCCATTTTAT 59.341 34.615 0.00 0.00 40.27 1.40
75 76 7.361971 GGCCAGGTTTCAAAATTCCATTTTATG 60.362 37.037 0.00 0.00 40.27 1.90
93 94 9.622004 CATTTTATGGATGTCATTCTCTATTGC 57.378 33.333 0.00 0.00 37.30 3.56
94 95 8.985315 TTTTATGGATGTCATTCTCTATTGCT 57.015 30.769 0.00 0.00 37.30 3.91
96 97 9.716531 TTTATGGATGTCATTCTCTATTGCTAG 57.283 33.333 0.00 0.00 37.30 3.42
97 98 6.983906 TGGATGTCATTCTCTATTGCTAGA 57.016 37.500 0.00 0.00 32.96 2.43
98 99 7.550597 TGGATGTCATTCTCTATTGCTAGAT 57.449 36.000 0.00 0.00 33.52 1.98
99 100 7.971201 TGGATGTCATTCTCTATTGCTAGATT 58.029 34.615 0.00 0.00 33.52 2.40
100 101 8.093307 TGGATGTCATTCTCTATTGCTAGATTC 58.907 37.037 0.00 0.00 33.52 2.52
101 102 8.093307 GGATGTCATTCTCTATTGCTAGATTCA 58.907 37.037 0.00 0.00 33.52 2.57
102 103 9.142515 GATGTCATTCTCTATTGCTAGATTCAG 57.857 37.037 0.00 0.00 33.52 3.02
103 104 8.242729 TGTCATTCTCTATTGCTAGATTCAGA 57.757 34.615 0.00 0.00 33.52 3.27
104 105 8.140628 TGTCATTCTCTATTGCTAGATTCAGAC 58.859 37.037 0.00 0.00 33.52 3.51
105 106 7.598493 GTCATTCTCTATTGCTAGATTCAGACC 59.402 40.741 0.00 0.00 33.52 3.85
106 107 6.412362 TTCTCTATTGCTAGATTCAGACCC 57.588 41.667 0.00 0.00 33.52 4.46
107 108 5.710646 TCTCTATTGCTAGATTCAGACCCT 58.289 41.667 0.00 0.00 33.52 4.34
108 109 6.853490 TCTCTATTGCTAGATTCAGACCCTA 58.147 40.000 0.00 0.00 33.52 3.53
109 110 6.945435 TCTCTATTGCTAGATTCAGACCCTAG 59.055 42.308 0.00 0.00 33.52 3.02
115 116 2.038659 AGATTCAGACCCTAGCTCTGC 58.961 52.381 9.73 0.00 35.95 4.26
116 117 1.069978 GATTCAGACCCTAGCTCTGCC 59.930 57.143 9.73 1.24 35.95 4.85
117 118 0.252239 TTCAGACCCTAGCTCTGCCA 60.252 55.000 9.73 0.00 35.95 4.92
118 119 0.972983 TCAGACCCTAGCTCTGCCAC 60.973 60.000 9.73 0.00 35.95 5.01
119 120 0.975040 CAGACCCTAGCTCTGCCACT 60.975 60.000 0.00 0.00 0.00 4.00
120 121 0.631753 AGACCCTAGCTCTGCCACTA 59.368 55.000 0.00 0.00 0.00 2.74
121 122 1.007238 AGACCCTAGCTCTGCCACTAA 59.993 52.381 0.00 0.00 0.00 2.24
122 123 1.831736 GACCCTAGCTCTGCCACTAAA 59.168 52.381 0.00 0.00 0.00 1.85
123 124 2.236395 GACCCTAGCTCTGCCACTAAAA 59.764 50.000 0.00 0.00 0.00 1.52
124 125 2.027100 ACCCTAGCTCTGCCACTAAAAC 60.027 50.000 0.00 0.00 0.00 2.43
125 126 2.027192 CCCTAGCTCTGCCACTAAAACA 60.027 50.000 0.00 0.00 0.00 2.83
126 127 3.370953 CCCTAGCTCTGCCACTAAAACAT 60.371 47.826 0.00 0.00 0.00 2.71
127 128 3.624861 CCTAGCTCTGCCACTAAAACATG 59.375 47.826 0.00 0.00 0.00 3.21
128 129 1.815003 AGCTCTGCCACTAAAACATGC 59.185 47.619 0.00 0.00 0.00 4.06
129 130 1.541147 GCTCTGCCACTAAAACATGCA 59.459 47.619 0.00 0.00 0.00 3.96
130 131 2.030007 GCTCTGCCACTAAAACATGCAA 60.030 45.455 0.00 0.00 0.00 4.08
131 132 3.552684 GCTCTGCCACTAAAACATGCAAA 60.553 43.478 0.00 0.00 0.00 3.68
132 133 3.976169 TCTGCCACTAAAACATGCAAAC 58.024 40.909 0.00 0.00 0.00 2.93
133 134 3.382865 TCTGCCACTAAAACATGCAAACA 59.617 39.130 0.00 0.00 0.00 2.83
134 135 4.118410 CTGCCACTAAAACATGCAAACAA 58.882 39.130 0.00 0.00 0.00 2.83
135 136 3.868077 TGCCACTAAAACATGCAAACAAC 59.132 39.130 0.00 0.00 0.00 3.32
136 137 4.119136 GCCACTAAAACATGCAAACAACT 58.881 39.130 0.00 0.00 0.00 3.16
137 138 5.163509 TGCCACTAAAACATGCAAACAACTA 60.164 36.000 0.00 0.00 0.00 2.24
138 139 5.174943 GCCACTAAAACATGCAAACAACTAC 59.825 40.000 0.00 0.00 0.00 2.73
139 140 6.269315 CCACTAAAACATGCAAACAACTACA 58.731 36.000 0.00 0.00 0.00 2.74
140 141 6.754209 CCACTAAAACATGCAAACAACTACAA 59.246 34.615 0.00 0.00 0.00 2.41
141 142 7.276658 CCACTAAAACATGCAAACAACTACAAA 59.723 33.333 0.00 0.00 0.00 2.83
142 143 8.651588 CACTAAAACATGCAAACAACTACAAAA 58.348 29.630 0.00 0.00 0.00 2.44
143 144 8.652463 ACTAAAACATGCAAACAACTACAAAAC 58.348 29.630 0.00 0.00 0.00 2.43
144 145 7.665561 AAAACATGCAAACAACTACAAAACT 57.334 28.000 0.00 0.00 0.00 2.66
145 146 8.764524 AAAACATGCAAACAACTACAAAACTA 57.235 26.923 0.00 0.00 0.00 2.24
146 147 8.764524 AAACATGCAAACAACTACAAAACTAA 57.235 26.923 0.00 0.00 0.00 2.24
147 148 8.940768 AACATGCAAACAACTACAAAACTAAT 57.059 26.923 0.00 0.00 0.00 1.73
148 149 8.940768 ACATGCAAACAACTACAAAACTAATT 57.059 26.923 0.00 0.00 0.00 1.40
152 153 9.303537 TGCAAACAACTACAAAACTAATTAACC 57.696 29.630 0.00 0.00 0.00 2.85
153 154 9.303537 GCAAACAACTACAAAACTAATTAACCA 57.696 29.630 0.00 0.00 0.00 3.67
157 158 8.139350 ACAACTACAAAACTAATTAACCAAGGC 58.861 33.333 0.00 0.00 0.00 4.35
158 159 7.826918 ACTACAAAACTAATTAACCAAGGCA 57.173 32.000 0.00 0.00 0.00 4.75
159 160 8.240267 ACTACAAAACTAATTAACCAAGGCAA 57.760 30.769 0.00 0.00 0.00 4.52
160 161 8.697292 ACTACAAAACTAATTAACCAAGGCAAA 58.303 29.630 0.00 0.00 0.00 3.68
161 162 9.535878 CTACAAAACTAATTAACCAAGGCAAAA 57.464 29.630 0.00 0.00 0.00 2.44
162 163 8.972458 ACAAAACTAATTAACCAAGGCAAAAT 57.028 26.923 0.00 0.00 0.00 1.82
163 164 9.051679 ACAAAACTAATTAACCAAGGCAAAATC 57.948 29.630 0.00 0.00 0.00 2.17
164 165 9.050601 CAAAACTAATTAACCAAGGCAAAATCA 57.949 29.630 0.00 0.00 0.00 2.57
165 166 9.620259 AAAACTAATTAACCAAGGCAAAATCAA 57.380 25.926 0.00 0.00 0.00 2.57
166 167 8.601845 AACTAATTAACCAAGGCAAAATCAAC 57.398 30.769 0.00 0.00 0.00 3.18
167 168 7.962441 ACTAATTAACCAAGGCAAAATCAACT 58.038 30.769 0.00 0.00 0.00 3.16
168 169 7.872483 ACTAATTAACCAAGGCAAAATCAACTG 59.128 33.333 0.00 0.00 0.00 3.16
169 170 2.531522 ACCAAGGCAAAATCAACTGC 57.468 45.000 0.00 0.00 37.86 4.40
170 171 1.761784 ACCAAGGCAAAATCAACTGCA 59.238 42.857 0.00 0.00 40.46 4.41
171 172 2.170187 ACCAAGGCAAAATCAACTGCAA 59.830 40.909 0.00 0.00 40.46 4.08
172 173 3.204526 CCAAGGCAAAATCAACTGCAAA 58.795 40.909 0.00 0.00 40.46 3.68
173 174 3.626670 CCAAGGCAAAATCAACTGCAAAA 59.373 39.130 0.00 0.00 40.46 2.44
174 175 4.276431 CCAAGGCAAAATCAACTGCAAAAT 59.724 37.500 0.00 0.00 40.46 1.82
175 176 5.445845 CAAGGCAAAATCAACTGCAAAATC 58.554 37.500 0.00 0.00 40.46 2.17
176 177 4.067192 AGGCAAAATCAACTGCAAAATCC 58.933 39.130 0.00 0.00 40.46 3.01
177 178 3.814283 GGCAAAATCAACTGCAAAATCCA 59.186 39.130 0.00 0.00 40.46 3.41
178 179 4.275443 GGCAAAATCAACTGCAAAATCCAA 59.725 37.500 0.00 0.00 40.46 3.53
179 180 5.207033 GCAAAATCAACTGCAAAATCCAAC 58.793 37.500 0.00 0.00 38.48 3.77
180 181 5.220815 GCAAAATCAACTGCAAAATCCAACA 60.221 36.000 0.00 0.00 38.48 3.33
181 182 6.677431 GCAAAATCAACTGCAAAATCCAACAA 60.677 34.615 0.00 0.00 38.48 2.83
182 183 5.989551 AATCAACTGCAAAATCCAACAAC 57.010 34.783 0.00 0.00 0.00 3.32
183 184 4.462508 TCAACTGCAAAATCCAACAACA 57.537 36.364 0.00 0.00 0.00 3.33
184 185 5.021033 TCAACTGCAAAATCCAACAACAT 57.979 34.783 0.00 0.00 0.00 2.71
185 186 4.809958 TCAACTGCAAAATCCAACAACATG 59.190 37.500 0.00 0.00 0.00 3.21
186 187 3.731089 ACTGCAAAATCCAACAACATGG 58.269 40.909 0.00 0.00 42.12 3.66
187 188 3.134442 ACTGCAAAATCCAACAACATGGT 59.866 39.130 0.00 0.00 41.46 3.55
188 189 4.128643 CTGCAAAATCCAACAACATGGTT 58.871 39.130 0.00 0.00 41.46 3.67
189 190 4.125703 TGCAAAATCCAACAACATGGTTC 58.874 39.130 0.00 0.00 41.46 3.62
190 191 4.125703 GCAAAATCCAACAACATGGTTCA 58.874 39.130 0.00 0.00 41.46 3.18
191 192 4.756135 GCAAAATCCAACAACATGGTTCAT 59.244 37.500 0.00 0.00 41.46 2.57
192 193 5.106987 GCAAAATCCAACAACATGGTTCATC 60.107 40.000 0.00 0.00 41.46 2.92
193 194 5.804944 AAATCCAACAACATGGTTCATCA 57.195 34.783 0.00 0.00 41.46 3.07
194 195 6.363167 AAATCCAACAACATGGTTCATCAT 57.637 33.333 0.00 0.00 41.46 2.45
196 197 4.405548 TCCAACAACATGGTTCATCATGA 58.594 39.130 7.06 0.00 45.30 3.07
197 198 4.218200 TCCAACAACATGGTTCATCATGAC 59.782 41.667 7.06 0.00 45.30 3.06
198 199 4.022155 CCAACAACATGGTTCATCATGACA 60.022 41.667 7.06 0.00 45.30 3.58
199 200 5.336929 CCAACAACATGGTTCATCATGACAT 60.337 40.000 7.06 0.00 45.30 3.06
200 201 5.319140 ACAACATGGTTCATCATGACATG 57.681 39.130 17.27 17.27 45.30 3.21
201 202 4.109766 CAACATGGTTCATCATGACATGC 58.890 43.478 18.30 2.79 45.30 4.06
202 203 3.358118 ACATGGTTCATCATGACATGCA 58.642 40.909 18.30 2.30 45.30 3.96
203 204 3.380320 ACATGGTTCATCATGACATGCAG 59.620 43.478 18.30 5.67 45.30 4.41
204 205 3.076079 TGGTTCATCATGACATGCAGT 57.924 42.857 10.76 0.00 0.00 4.40
205 206 4.219264 TGGTTCATCATGACATGCAGTA 57.781 40.909 10.76 0.00 0.00 2.74
206 207 4.587891 TGGTTCATCATGACATGCAGTAA 58.412 39.130 10.76 0.15 0.00 2.24
207 208 5.195185 TGGTTCATCATGACATGCAGTAAT 58.805 37.500 10.76 0.00 0.00 1.89
208 209 5.066764 TGGTTCATCATGACATGCAGTAATG 59.933 40.000 10.76 8.81 40.04 1.90
214 215 6.796705 TCATGACATGCAGTAATGATCATC 57.203 37.500 9.06 0.00 42.15 2.92
215 216 6.531021 TCATGACATGCAGTAATGATCATCT 58.469 36.000 9.06 0.00 42.15 2.90
216 217 7.673180 TCATGACATGCAGTAATGATCATCTA 58.327 34.615 9.06 1.36 42.15 1.98
217 218 8.152246 TCATGACATGCAGTAATGATCATCTAA 58.848 33.333 9.06 0.00 42.15 2.10
218 219 8.780249 CATGACATGCAGTAATGATCATCTAAA 58.220 33.333 9.06 0.00 41.03 1.85
219 220 8.735692 TGACATGCAGTAATGATCATCTAAAA 57.264 30.769 9.06 0.00 0.00 1.52
220 221 9.176460 TGACATGCAGTAATGATCATCTAAAAA 57.824 29.630 9.06 0.00 0.00 1.94
221 222 9.443283 GACATGCAGTAATGATCATCTAAAAAC 57.557 33.333 9.06 1.52 0.00 2.43
222 223 8.408601 ACATGCAGTAATGATCATCTAAAAACC 58.591 33.333 9.06 0.00 0.00 3.27
223 224 7.333528 TGCAGTAATGATCATCTAAAAACCC 57.666 36.000 9.06 0.00 0.00 4.11
224 225 7.118723 TGCAGTAATGATCATCTAAAAACCCT 58.881 34.615 9.06 0.00 0.00 4.34
225 226 7.283127 TGCAGTAATGATCATCTAAAAACCCTC 59.717 37.037 9.06 0.00 0.00 4.30
226 227 7.500559 GCAGTAATGATCATCTAAAAACCCTCT 59.499 37.037 9.06 0.00 0.00 3.69
229 230 8.979574 GTAATGATCATCTAAAAACCCTCTACG 58.020 37.037 9.06 0.00 0.00 3.51
230 231 5.357257 TGATCATCTAAAAACCCTCTACGC 58.643 41.667 0.00 0.00 0.00 4.42
231 232 4.133013 TCATCTAAAAACCCTCTACGCC 57.867 45.455 0.00 0.00 0.00 5.68
232 233 3.118519 TCATCTAAAAACCCTCTACGCCC 60.119 47.826 0.00 0.00 0.00 6.13
233 234 2.543635 TCTAAAAACCCTCTACGCCCT 58.456 47.619 0.00 0.00 0.00 5.19
234 235 3.711863 TCTAAAAACCCTCTACGCCCTA 58.288 45.455 0.00 0.00 0.00 3.53
235 236 2.775911 AAAAACCCTCTACGCCCTAC 57.224 50.000 0.00 0.00 0.00 3.18
236 237 1.648116 AAAACCCTCTACGCCCTACA 58.352 50.000 0.00 0.00 0.00 2.74
237 238 1.875488 AAACCCTCTACGCCCTACAT 58.125 50.000 0.00 0.00 0.00 2.29
238 239 2.761786 AACCCTCTACGCCCTACATA 57.238 50.000 0.00 0.00 0.00 2.29
239 240 2.761786 ACCCTCTACGCCCTACATAA 57.238 50.000 0.00 0.00 0.00 1.90
240 241 3.255634 ACCCTCTACGCCCTACATAAT 57.744 47.619 0.00 0.00 0.00 1.28
241 242 2.897969 ACCCTCTACGCCCTACATAATG 59.102 50.000 0.00 0.00 0.00 1.90
242 243 3.162666 CCCTCTACGCCCTACATAATGA 58.837 50.000 0.00 0.00 0.00 2.57
243 244 3.576982 CCCTCTACGCCCTACATAATGAA 59.423 47.826 0.00 0.00 0.00 2.57
244 245 4.223032 CCCTCTACGCCCTACATAATGAAT 59.777 45.833 0.00 0.00 0.00 2.57
245 246 5.171476 CCTCTACGCCCTACATAATGAATG 58.829 45.833 0.00 0.00 41.74 2.67
246 247 5.147330 TCTACGCCCTACATAATGAATGG 57.853 43.478 0.00 0.00 40.16 3.16
247 248 4.836175 TCTACGCCCTACATAATGAATGGA 59.164 41.667 0.00 0.00 40.16 3.41
248 249 4.431416 ACGCCCTACATAATGAATGGAA 57.569 40.909 0.00 0.00 40.16 3.53
249 250 4.787551 ACGCCCTACATAATGAATGGAAA 58.212 39.130 0.00 0.00 40.16 3.13
250 251 4.578928 ACGCCCTACATAATGAATGGAAAC 59.421 41.667 0.00 0.00 40.16 2.78
251 252 4.319477 CGCCCTACATAATGAATGGAAACG 60.319 45.833 0.00 0.00 40.16 3.60
252 253 4.819630 GCCCTACATAATGAATGGAAACGA 59.180 41.667 0.00 0.00 40.16 3.85
258 259 7.316544 ACATAATGAATGGAAACGACTAACC 57.683 36.000 0.00 0.00 40.16 2.85
275 276 2.781681 ACCATAGTCCAAAAGGACGG 57.218 50.000 8.85 7.16 43.02 4.79
288 289 0.470456 AGGACGGTACCCAGTTCACA 60.470 55.000 6.25 0.00 0.00 3.58
294 295 1.674817 GGTACCCAGTTCACATCCACG 60.675 57.143 0.00 0.00 0.00 4.94
312 313 1.884926 GCCGCCTAGTCATGTGCTC 60.885 63.158 0.00 0.00 0.00 4.26
313 314 1.819229 CCGCCTAGTCATGTGCTCT 59.181 57.895 0.00 0.00 0.00 4.09
315 316 0.593518 CGCCTAGTCATGTGCTCTCG 60.594 60.000 0.00 0.00 0.00 4.04
316 317 0.873743 GCCTAGTCATGTGCTCTCGC 60.874 60.000 0.00 0.00 0.00 5.03
325 326 2.917227 TGCTCTCGCAGGTGGTGA 60.917 61.111 0.00 0.00 42.25 4.02
329 330 2.433838 CTCGCAGGTGGTGAGCAG 60.434 66.667 0.00 0.00 46.27 4.24
330 331 3.231889 CTCGCAGGTGGTGAGCAGT 62.232 63.158 0.00 0.00 46.27 4.40
331 332 2.281070 CGCAGGTGGTGAGCAGTT 60.281 61.111 0.00 0.00 0.00 3.16
332 333 2.610694 CGCAGGTGGTGAGCAGTTG 61.611 63.158 0.00 0.00 0.00 3.16
348 349 3.201290 CAGTTGCCATAGATGACCTCAC 58.799 50.000 0.00 0.00 0.00 3.51
354 355 1.683385 CATAGATGACCTCACGCCAGA 59.317 52.381 0.00 0.00 0.00 3.86
372 373 0.727398 GATTTGTCGAAGGAAGCGGG 59.273 55.000 0.00 0.00 0.00 6.13
394 395 1.911293 GATGCGGCACAAAAGAGCGA 61.911 55.000 4.03 0.00 0.00 4.93
411 412 2.897969 AGCGACCAAGTTAGGAGAAAGA 59.102 45.455 0.00 0.00 0.00 2.52
417 418 3.691609 CCAAGTTAGGAGAAAGACATGGC 59.308 47.826 0.00 0.00 0.00 4.40
418 419 4.326826 CAAGTTAGGAGAAAGACATGGCA 58.673 43.478 0.00 0.00 0.00 4.92
420 421 5.184892 AGTTAGGAGAAAGACATGGCAAT 57.815 39.130 0.00 0.00 0.00 3.56
436 437 3.956199 TGGCAATCATCTTTTCATCTCCC 59.044 43.478 0.00 0.00 0.00 4.30
439 440 5.829924 GGCAATCATCTTTTCATCTCCCTTA 59.170 40.000 0.00 0.00 0.00 2.69
447 448 6.910191 TCTTTTCATCTCCCTTATGCCATAA 58.090 36.000 0.00 0.00 0.00 1.90
455 456 2.549754 CCCTTATGCCATAACTTGAGCG 59.450 50.000 0.00 0.00 0.00 5.03
456 457 2.549754 CCTTATGCCATAACTTGAGCGG 59.450 50.000 0.00 0.00 0.00 5.52
459 460 1.748879 GCCATAACTTGAGCGGGCA 60.749 57.895 0.00 0.00 41.02 5.36
471 472 0.893270 AGCGGGCACATTGCTTTACA 60.893 50.000 0.00 0.00 44.28 2.41
473 474 0.171007 CGGGCACATTGCTTTACAGG 59.829 55.000 0.00 0.00 44.28 4.00
477 478 2.817258 GGCACATTGCTTTACAGGTGTA 59.183 45.455 0.00 0.00 44.28 2.90
481 482 5.323900 CACATTGCTTTACAGGTGTATTCG 58.676 41.667 0.00 0.00 33.24 3.34
484 485 1.326548 GCTTTACAGGTGTATTCGGCG 59.673 52.381 0.00 0.00 0.00 6.46
486 487 0.533491 TTACAGGTGTATTCGGCGCT 59.467 50.000 7.64 0.00 0.00 5.92
493 494 2.610374 GGTGTATTCGGCGCTAAAATCA 59.390 45.455 7.64 3.41 0.00 2.57
494 495 3.545426 GGTGTATTCGGCGCTAAAATCAC 60.545 47.826 7.64 13.89 0.00 3.06
495 496 3.062909 GTGTATTCGGCGCTAAAATCACA 59.937 43.478 7.64 5.66 0.00 3.58
498 499 1.060308 CGGCGCTAAAATCACACCG 59.940 57.895 7.64 0.00 0.00 4.94
524 525 2.093869 GTCATGTTTGGAATGCAGCCAT 60.094 45.455 11.45 0.00 34.90 4.40
544 545 2.188731 GGCACCCTTACGCCCTAC 59.811 66.667 0.00 0.00 42.82 3.18
551 552 2.042026 ACCCTTACGCCCTACCAAAAAT 59.958 45.455 0.00 0.00 0.00 1.82
554 555 4.381185 CCCTTACGCCCTACCAAAAATTTC 60.381 45.833 0.00 0.00 0.00 2.17
556 557 1.897133 ACGCCCTACCAAAAATTTCCC 59.103 47.619 0.00 0.00 0.00 3.97
564 565 3.035363 ACCAAAAATTTCCCCGTTGACT 58.965 40.909 0.00 0.00 0.00 3.41
565 566 3.181470 ACCAAAAATTTCCCCGTTGACTG 60.181 43.478 0.00 0.00 0.00 3.51
569 570 3.366052 AATTTCCCCGTTGACTGCTAT 57.634 42.857 0.00 0.00 0.00 2.97
572 573 4.497291 TTTCCCCGTTGACTGCTATTAT 57.503 40.909 0.00 0.00 0.00 1.28
574 575 2.104111 TCCCCGTTGACTGCTATTATGG 59.896 50.000 0.00 0.00 0.00 2.74
575 576 1.873591 CCCGTTGACTGCTATTATGGC 59.126 52.381 0.00 0.00 0.00 4.40
576 577 1.873591 CCGTTGACTGCTATTATGGCC 59.126 52.381 0.00 0.00 0.00 5.36
577 578 2.560504 CGTTGACTGCTATTATGGCCA 58.439 47.619 8.56 8.56 0.00 5.36
604 605 1.271934 TGGATTGGCACCAACATTTCG 59.728 47.619 3.77 0.00 38.88 3.46
631 633 4.307834 ACGACAATTTTTCGATCACTCG 57.692 40.909 11.60 0.00 46.41 4.18
636 638 3.991605 ATTTTTCGATCACTCGGTTCG 57.008 42.857 0.00 0.00 45.10 3.95
651 653 1.098712 GTTCGGCTTTCACACCCACA 61.099 55.000 0.00 0.00 0.00 4.17
652 654 0.179004 TTCGGCTTTCACACCCACAT 60.179 50.000 0.00 0.00 0.00 3.21
687 689 0.458370 GCGGCAAAATCTTTCGCCAT 60.458 50.000 5.54 0.00 45.14 4.40
708 711 2.285889 TTTTGGTGGGGACGGCTGAA 62.286 55.000 0.00 0.00 0.00 3.02
711 714 4.329545 GTGGGGACGGCTGAAGCA 62.330 66.667 0.00 0.00 44.36 3.91
726 729 2.083774 GAAGCATGATCCAAACGGACA 58.916 47.619 0.00 0.00 34.62 4.02
736 739 5.587043 TGATCCAAACGGACACAAATATACC 59.413 40.000 0.00 0.00 34.62 2.73
740 743 5.446741 CCAAACGGACACAAATATACCGAAG 60.447 44.000 0.00 0.00 45.31 3.79
748 751 7.113658 ACACAAATATACCGAAGAGAGACAT 57.886 36.000 0.00 0.00 0.00 3.06
788 793 1.298157 ATGTCCGACGTGCCATGTTG 61.298 55.000 0.00 0.00 0.00 3.33
797 802 2.270850 GCCATGTTGGGACGCCTA 59.729 61.111 0.00 0.00 38.19 3.93
886 893 1.537562 CGGACGGATTACTACAAGGGC 60.538 57.143 0.00 0.00 0.00 5.19
929 936 1.202582 GTCTCGGTCCATCCATATCCG 59.797 57.143 0.00 0.00 42.12 4.18
932 939 2.423892 CTCGGTCCATCCATATCCGTAG 59.576 54.545 0.00 0.00 41.58 3.51
935 949 2.166664 GGTCCATCCATATCCGTAGAGC 59.833 54.545 0.00 0.00 35.97 4.09
946 960 2.876091 TCCGTAGAGCAGATTCAAACG 58.124 47.619 0.00 0.00 0.00 3.60
992 1006 2.995574 AACCTCGGACCTCGGGTG 60.996 66.667 0.00 0.00 40.52 4.61
993 1007 3.518552 AACCTCGGACCTCGGGTGA 62.519 63.158 0.00 0.00 40.52 4.02
994 1008 2.442272 CCTCGGACCTCGGGTGAT 60.442 66.667 0.00 0.00 37.74 3.06
995 1009 2.491022 CCTCGGACCTCGGGTGATC 61.491 68.421 0.00 0.00 37.74 2.92
1099 1113 3.844090 GCAGCCTCGAGGACTCCC 61.844 72.222 35.69 16.65 37.39 4.30
1173 1190 2.203365 TCTCCTCCGCGATCCTCC 60.203 66.667 8.23 0.00 0.00 4.30
1348 1385 1.200716 TCGTTCGCTAGTGTTAGGGTG 59.799 52.381 2.66 0.00 39.95 4.61
1349 1386 1.068055 CGTTCGCTAGTGTTAGGGTGT 60.068 52.381 2.66 0.00 39.95 4.16
1365 1402 2.858344 GGGTGTATTCTGATCGTTGTCG 59.142 50.000 0.00 0.00 38.55 4.35
1398 1435 3.414700 GCCGTGCAGTCGAACCTG 61.415 66.667 0.00 0.00 35.49 4.00
1545 1586 0.388134 CTGTGCATTCAGCTGTTGGC 60.388 55.000 14.67 15.36 45.94 4.52
1678 1719 2.106938 GCATCCTGTCGCGGATCA 59.893 61.111 6.13 2.65 41.81 2.92
1686 1727 0.249120 TGTCGCGGATCACCAAGATT 59.751 50.000 6.13 0.00 37.00 2.40
1753 2079 5.010112 TCCGAATTCTGCTAAGATAGTGGAG 59.990 44.000 3.52 0.00 30.72 3.86
1755 2081 5.605534 GAATTCTGCTAAGATAGTGGAGCA 58.394 41.667 0.00 0.00 42.47 4.26
1789 2115 1.003545 GCCGTGTAGCTACATGCATTG 60.004 52.381 32.16 22.19 45.94 2.82
1816 2142 7.015292 TGGGAACTGTATATGTTGGATAGAGTC 59.985 40.741 0.00 0.00 33.52 3.36
1817 2143 7.233757 GGGAACTGTATATGTTGGATAGAGTCT 59.766 40.741 0.00 0.00 33.52 3.24
1818 2144 9.298250 GGAACTGTATATGTTGGATAGAGTCTA 57.702 37.037 1.45 1.45 33.52 2.59
1829 2158 8.258007 TGTTGGATAGAGTCTACCAAGTAATTG 58.742 37.037 23.45 0.00 41.97 2.32
1850 2179 3.895656 TGTACTCTTCAGCTACACCAAGT 59.104 43.478 0.00 0.00 0.00 3.16
1851 2180 4.344102 TGTACTCTTCAGCTACACCAAGTT 59.656 41.667 0.00 0.00 0.00 2.66
1886 2257 9.485206 ACTAACGTTAATACAAAGTTGAGTCAT 57.515 29.630 9.68 0.00 0.00 3.06
1902 2273 5.505780 TGAGTCATTTATTTTGGGACGGAT 58.494 37.500 0.00 0.00 33.84 4.18
1907 2284 3.443145 TTATTTTGGGACGGATGGTGT 57.557 42.857 0.00 0.00 0.00 4.16
1911 2288 0.695924 TTGGGACGGATGGTGTCAAT 59.304 50.000 0.00 0.00 38.10 2.57
1931 2308 0.899720 TAGTAGTGGTTTGGGGCTCG 59.100 55.000 0.00 0.00 0.00 5.03
2430 2807 5.431765 ACCTAGATGTTGCTAGAATGTTGG 58.568 41.667 0.00 0.00 40.20 3.77
2432 2809 3.689347 AGATGTTGCTAGAATGTTGGCA 58.311 40.909 0.00 0.00 0.00 4.92
2442 2819 3.077359 AGAATGTTGGCAACTACTCAGC 58.923 45.455 28.71 12.33 43.18 4.26
2483 2860 3.632855 CTTGACCTCAAGTTTCCTTGC 57.367 47.619 6.85 0.00 46.33 4.01
2531 2908 7.176690 TCCTTCCATTCATTGTTTTTCCTACTC 59.823 37.037 0.00 0.00 0.00 2.59
2778 3162 7.602517 ACTGTCATCTCAACTATTTTAGCAC 57.397 36.000 0.00 0.00 0.00 4.40
2813 3197 9.905713 ATTTCAATAACTGCCTATTCTACTTGA 57.094 29.630 0.00 0.00 0.00 3.02
2816 3200 8.540388 TCAATAACTGCCTATTCTACTTGAGTT 58.460 33.333 0.00 0.00 0.00 3.01
2910 3296 3.968649 TGCAACTCTTTCACTCAAATGC 58.031 40.909 0.00 0.00 30.08 3.56
2921 3308 9.598517 TCTTTCACTCAAATGCTGTTTTATTTT 57.401 25.926 0.00 0.00 0.00 1.82
2955 3342 4.474394 AGCTTATCCTTAATTCTTGCCCC 58.526 43.478 0.00 0.00 0.00 5.80
2956 3343 4.079212 AGCTTATCCTTAATTCTTGCCCCA 60.079 41.667 0.00 0.00 0.00 4.96
2957 3344 4.649218 GCTTATCCTTAATTCTTGCCCCAA 59.351 41.667 0.00 0.00 0.00 4.12
2958 3345 5.128663 GCTTATCCTTAATTCTTGCCCCAAA 59.871 40.000 0.00 0.00 0.00 3.28
2959 3346 6.351796 GCTTATCCTTAATTCTTGCCCCAAAA 60.352 38.462 0.00 0.00 0.00 2.44
2960 3347 5.682234 ATCCTTAATTCTTGCCCCAAAAG 57.318 39.130 0.00 0.00 0.00 2.27
2961 3348 4.488770 TCCTTAATTCTTGCCCCAAAAGT 58.511 39.130 0.00 0.00 0.00 2.66
2962 3349 4.904853 TCCTTAATTCTTGCCCCAAAAGTT 59.095 37.500 0.00 0.00 0.00 2.66
2963 3350 4.996758 CCTTAATTCTTGCCCCAAAAGTTG 59.003 41.667 0.00 0.00 0.00 3.16
2978 3365 6.820470 CAAAAGTTGGAGTAAATCGCAAAA 57.180 33.333 0.00 0.00 0.00 2.44
2979 3366 7.227992 CAAAAGTTGGAGTAAATCGCAAAAA 57.772 32.000 0.00 0.00 0.00 1.94
2996 3383 3.340814 AAAAACCACCACAATTGTGCA 57.659 38.095 29.42 0.00 44.34 4.57
2997 3384 3.340814 AAAACCACCACAATTGTGCAA 57.659 38.095 29.42 0.00 44.34 4.08
2998 3385 3.340814 AAACCACCACAATTGTGCAAA 57.659 38.095 29.42 0.00 44.34 3.68
2999 3386 3.340814 AACCACCACAATTGTGCAAAA 57.659 38.095 29.42 0.00 44.34 2.44
3000 3387 2.903798 ACCACCACAATTGTGCAAAAG 58.096 42.857 29.42 18.88 44.34 2.27
3001 3388 2.235898 ACCACCACAATTGTGCAAAAGT 59.764 40.909 29.42 19.47 44.34 2.66
3002 3389 2.865551 CCACCACAATTGTGCAAAAGTC 59.134 45.455 29.42 0.00 44.34 3.01
3003 3390 3.519579 CACCACAATTGTGCAAAAGTCA 58.480 40.909 29.42 0.00 44.34 3.41
3004 3391 4.121317 CACCACAATTGTGCAAAAGTCAT 58.879 39.130 29.42 6.03 44.34 3.06
3005 3392 4.209703 CACCACAATTGTGCAAAAGTCATC 59.790 41.667 29.42 0.00 44.34 2.92
3006 3393 4.141981 ACCACAATTGTGCAAAAGTCATCA 60.142 37.500 29.42 0.00 44.34 3.07
3007 3394 4.809958 CCACAATTGTGCAAAAGTCATCAA 59.190 37.500 29.42 0.00 44.34 2.57
3008 3395 5.293814 CCACAATTGTGCAAAAGTCATCAAA 59.706 36.000 29.42 0.00 44.34 2.69
3009 3396 6.186785 CACAATTGTGCAAAAGTCATCAAAC 58.813 36.000 24.69 0.00 39.39 2.93
3010 3397 5.873712 ACAATTGTGCAAAAGTCATCAAACA 59.126 32.000 11.07 0.00 0.00 2.83
3011 3398 5.971895 ATTGTGCAAAAGTCATCAAACAC 57.028 34.783 0.00 0.00 0.00 3.32
3012 3399 3.779759 TGTGCAAAAGTCATCAAACACC 58.220 40.909 0.00 0.00 0.00 4.16
3013 3400 3.123050 GTGCAAAAGTCATCAAACACCC 58.877 45.455 0.00 0.00 0.00 4.61
3014 3401 2.762887 TGCAAAAGTCATCAAACACCCA 59.237 40.909 0.00 0.00 0.00 4.51
3015 3402 3.123050 GCAAAAGTCATCAAACACCCAC 58.877 45.455 0.00 0.00 0.00 4.61
3016 3403 3.716601 CAAAAGTCATCAAACACCCACC 58.283 45.455 0.00 0.00 0.00 4.61
3017 3404 2.746279 AAGTCATCAAACACCCACCA 57.254 45.000 0.00 0.00 0.00 4.17
3018 3405 2.746279 AGTCATCAAACACCCACCAA 57.254 45.000 0.00 0.00 0.00 3.67
3019 3406 3.025322 AGTCATCAAACACCCACCAAA 57.975 42.857 0.00 0.00 0.00 3.28
3020 3407 3.370104 AGTCATCAAACACCCACCAAAA 58.630 40.909 0.00 0.00 0.00 2.44
3021 3408 3.966665 AGTCATCAAACACCCACCAAAAT 59.033 39.130 0.00 0.00 0.00 1.82
3022 3409 4.057432 GTCATCAAACACCCACCAAAATG 58.943 43.478 0.00 0.00 0.00 2.32
3023 3410 2.611225 TCAAACACCCACCAAAATGC 57.389 45.000 0.00 0.00 0.00 3.56
3024 3411 1.833630 TCAAACACCCACCAAAATGCA 59.166 42.857 0.00 0.00 0.00 3.96
3025 3412 2.437281 TCAAACACCCACCAAAATGCAT 59.563 40.909 0.00 0.00 0.00 3.96
3026 3413 2.547299 AACACCCACCAAAATGCATG 57.453 45.000 0.00 0.00 0.00 4.06
3027 3414 0.035176 ACACCCACCAAAATGCATGC 59.965 50.000 11.82 11.82 0.00 4.06
3028 3415 0.322322 CACCCACCAAAATGCATGCT 59.678 50.000 20.33 1.07 0.00 3.79
3029 3416 1.058284 ACCCACCAAAATGCATGCTT 58.942 45.000 20.33 10.16 0.00 3.91
3030 3417 1.420891 ACCCACCAAAATGCATGCTTT 59.579 42.857 20.33 16.30 0.00 3.51
3031 3418 2.078392 CCCACCAAAATGCATGCTTTC 58.922 47.619 20.33 0.00 0.00 2.62
3032 3419 2.289819 CCCACCAAAATGCATGCTTTCT 60.290 45.455 20.33 2.26 0.00 2.52
3033 3420 2.739913 CCACCAAAATGCATGCTTTCTG 59.260 45.455 20.33 15.41 0.00 3.02
3034 3421 2.739913 CACCAAAATGCATGCTTTCTGG 59.260 45.455 28.19 28.19 0.00 3.86
3035 3422 2.369532 ACCAAAATGCATGCTTTCTGGT 59.630 40.909 29.28 29.28 0.00 4.00
3036 3423 3.181452 ACCAAAATGCATGCTTTCTGGTT 60.181 39.130 29.28 17.98 0.00 3.67
3037 3424 3.187637 CCAAAATGCATGCTTTCTGGTTG 59.812 43.478 23.92 19.72 0.00 3.77
3038 3425 2.754946 AATGCATGCTTTCTGGTTGG 57.245 45.000 20.33 0.00 0.00 3.77
3039 3426 1.636148 ATGCATGCTTTCTGGTTGGT 58.364 45.000 20.33 0.00 0.00 3.67
3040 3427 1.412079 TGCATGCTTTCTGGTTGGTT 58.588 45.000 20.33 0.00 0.00 3.67
3041 3428 1.761784 TGCATGCTTTCTGGTTGGTTT 59.238 42.857 20.33 0.00 0.00 3.27
3042 3429 2.170187 TGCATGCTTTCTGGTTGGTTTT 59.830 40.909 20.33 0.00 0.00 2.43
3043 3430 3.205338 GCATGCTTTCTGGTTGGTTTTT 58.795 40.909 11.37 0.00 0.00 1.94
3064 3451 6.810888 TTTTCTGAAGCATTGAAAACTTCG 57.189 33.333 6.21 2.83 42.17 3.79
3065 3452 5.749596 TTCTGAAGCATTGAAAACTTCGA 57.250 34.783 6.21 0.00 42.17 3.71
3066 3453 5.095691 TCTGAAGCATTGAAAACTTCGAC 57.904 39.130 6.21 0.00 42.17 4.20
3067 3454 4.024048 TCTGAAGCATTGAAAACTTCGACC 60.024 41.667 6.21 0.00 42.17 4.79
3068 3455 3.629855 TGAAGCATTGAAAACTTCGACCA 59.370 39.130 6.21 0.00 42.17 4.02
3069 3456 4.097135 TGAAGCATTGAAAACTTCGACCAA 59.903 37.500 6.21 0.00 42.17 3.67
3070 3457 4.647424 AGCATTGAAAACTTCGACCAAA 57.353 36.364 0.00 0.00 0.00 3.28
3071 3458 5.200368 AGCATTGAAAACTTCGACCAAAT 57.800 34.783 0.00 0.00 0.00 2.32
3072 3459 5.600696 AGCATTGAAAACTTCGACCAAATT 58.399 33.333 0.00 0.00 0.00 1.82
3073 3460 6.048509 AGCATTGAAAACTTCGACCAAATTT 58.951 32.000 0.00 0.00 0.00 1.82
3074 3461 6.538381 AGCATTGAAAACTTCGACCAAATTTT 59.462 30.769 0.00 0.00 0.00 1.82
3075 3462 6.628461 GCATTGAAAACTTCGACCAAATTTTG 59.372 34.615 1.99 1.99 0.00 2.44
3108 3495 7.778470 TTGCAATTTACTCCGAAAATTTGTT 57.222 28.000 0.00 0.00 35.00 2.83
3117 3504 6.156519 ACTCCGAAAATTTGTTCTATTTGCC 58.843 36.000 0.00 0.00 0.00 4.52
3196 3583 6.376299 GGCTTTATGAGGATGATGAATATGCA 59.624 38.462 0.00 0.00 0.00 3.96
3286 3673 2.890311 TCTGGTAAGTTTGTTGCCCATG 59.110 45.455 0.00 0.00 0.00 3.66
3337 3724 6.282930 ACCGTAGTTTCACAAGCTAACTTTA 58.717 36.000 4.24 0.00 34.26 1.85
3349 3736 7.121168 CACAAGCTAACTTTAATCCAAGGATCA 59.879 37.037 1.37 0.00 32.29 2.92
3398 3989 4.944619 TGTTGCCCATGTCATTTTGTTA 57.055 36.364 0.00 0.00 0.00 2.41
3399 3990 5.282055 TGTTGCCCATGTCATTTTGTTAA 57.718 34.783 0.00 0.00 0.00 2.01
3666 4263 3.243771 ACTCCACTGACTACGGTTTTCTG 60.244 47.826 0.00 0.00 32.77 3.02
3714 4319 9.818796 GTCTGACATCTTAATTTTCTTCAGTTC 57.181 33.333 2.24 0.00 32.71 3.01
3760 4365 2.004583 TCGACAACGAAGCCATTAGG 57.995 50.000 0.00 0.00 45.74 2.69
3762 4367 1.393539 CGACAACGAAGCCATTAGGTG 59.606 52.381 0.00 0.00 42.66 4.00
3764 4369 2.415512 GACAACGAAGCCATTAGGTGAC 59.584 50.000 0.00 0.00 32.92 3.67
3765 4370 2.224426 ACAACGAAGCCATTAGGTGACA 60.224 45.455 0.00 0.00 32.92 3.58
3794 4618 4.397481 TGACTGTCTGGACATGATGATC 57.603 45.455 9.51 0.00 41.01 2.92
3797 4621 4.550669 ACTGTCTGGACATGATGATCCTA 58.449 43.478 0.00 0.00 41.01 2.94
3814 4784 2.846206 TCCTAGCATGTCCAAATCAGGT 59.154 45.455 0.00 0.00 0.00 4.00
3815 4785 3.266772 TCCTAGCATGTCCAAATCAGGTT 59.733 43.478 0.00 0.00 0.00 3.50
3888 4862 2.081462 CGGTTATCACTTGGTGGGTTC 58.919 52.381 0.00 0.00 33.87 3.62
4113 5119 9.129209 CGCTCTTATAATTTCGTTATCTGATCA 57.871 33.333 0.00 0.00 34.82 2.92
4151 5158 5.280945 GCTTTTGCTTCAATCAGTGTGTTA 58.719 37.500 0.00 0.00 43.35 2.41
4167 5174 5.360144 AGTGTGTTATTCTAGCACCGTCTAT 59.640 40.000 0.00 0.00 38.88 1.98
4174 5181 2.172930 TCTAGCACCGTCTATGGAGAGT 59.827 50.000 0.00 0.00 30.20 3.24
4213 5220 3.944015 ACATCTTAGAAGAGCATTGTGGC 59.056 43.478 0.00 0.00 38.66 5.01
4583 5592 7.359431 GCAATATGAACCAACAAATTGTCACAG 60.359 37.037 0.00 0.00 33.60 3.66
4598 5607 0.311790 CACAGCGCAAGTTTGGTCAT 59.688 50.000 11.47 0.00 41.68 3.06
4599 5608 1.535028 CACAGCGCAAGTTTGGTCATA 59.465 47.619 11.47 0.00 41.68 2.15
4607 5616 4.143137 CGCAAGTTTGGTCATATTTTTGGC 60.143 41.667 0.00 0.00 0.00 4.52
4638 5647 7.345914 AGGTAGCTTATGTCCTAGAAATGAACT 59.654 37.037 0.00 0.00 0.00 3.01
4704 5714 3.904571 GGAATTCCCGTGTTGGTTTTAC 58.095 45.455 14.03 0.00 35.15 2.01
4737 5747 8.425577 AATATATATTTCTGGCACGATACAGC 57.574 34.615 1.91 0.00 34.76 4.40
4785 5813 4.728534 TGTGTTGTTGCAACTAGTTTGTC 58.271 39.130 28.61 10.11 37.54 3.18
4832 6363 6.932356 TGCCATTTTTGCAAAAGTGATTAA 57.068 29.167 35.46 20.71 37.69 1.40
4897 6428 4.280677 TCGCATGGAAATGAAGAAAAGGTT 59.719 37.500 0.00 0.00 0.00 3.50
5018 6557 5.175859 GTGTTCGATTAGAGTGGGATGAAA 58.824 41.667 0.00 0.00 0.00 2.69
5132 6673 4.062293 TCAATGAAGTGGTAACTTGGTCG 58.938 43.478 0.00 0.00 46.84 4.79
5134 6675 4.553330 ATGAAGTGGTAACTTGGTCGAT 57.447 40.909 0.00 0.00 46.84 3.59
5139 6680 5.479124 AGTGGTAACTTGGTCGATTACTT 57.521 39.130 5.98 0.00 30.14 2.24
5149 6690 3.181469 TGGTCGATTACTTGGTGATAGCC 60.181 47.826 0.00 0.00 0.00 3.93
5208 6749 7.407337 ACAAAGTCGATTGAAAGAGTGTAAAC 58.593 34.615 5.78 0.00 34.38 2.01
5336 6903 5.596361 ACCATTGATCATCTCTAGTCGAACT 59.404 40.000 0.00 0.00 0.00 3.01
5340 6907 5.186198 TGATCATCTCTAGTCGAACTGTCA 58.814 41.667 0.00 0.00 0.00 3.58
5345 6912 7.030165 TCATCTCTAGTCGAACTGTCAAAATC 58.970 38.462 0.00 0.00 0.00 2.17
5360 6927 6.789268 TGTCAAAATCTATCCCCTCAAAAGA 58.211 36.000 0.00 0.00 0.00 2.52
5364 6931 5.638530 AATCTATCCCCTCAAAAGACTCC 57.361 43.478 0.00 0.00 0.00 3.85
5370 6937 3.657727 TCCCCTCAAAAGACTCCTCAAAT 59.342 43.478 0.00 0.00 0.00 2.32
5379 6946 7.661847 TCAAAAGACTCCTCAAATCTTAACTCC 59.338 37.037 0.00 0.00 32.38 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.857734 TTGAGATTCAACTTTTCACACACTA 57.142 32.000 0.00 0.00 30.26 2.74
1 2 6.757897 TTGAGATTCAACTTTTCACACACT 57.242 33.333 0.00 0.00 30.26 3.55
2 3 6.418819 CCATTGAGATTCAACTTTTCACACAC 59.581 38.462 0.00 0.00 39.45 3.82
3 4 6.096705 ACCATTGAGATTCAACTTTTCACACA 59.903 34.615 0.00 0.00 39.45 3.72
4 5 6.507023 ACCATTGAGATTCAACTTTTCACAC 58.493 36.000 0.00 0.00 39.45 3.82
5 6 6.547141 AGACCATTGAGATTCAACTTTTCACA 59.453 34.615 0.00 0.00 39.45 3.58
6 7 6.974965 AGACCATTGAGATTCAACTTTTCAC 58.025 36.000 0.00 0.00 39.45 3.18
7 8 8.156820 TCTAGACCATTGAGATTCAACTTTTCA 58.843 33.333 0.00 0.00 39.45 2.69
8 9 8.553459 TCTAGACCATTGAGATTCAACTTTTC 57.447 34.615 0.00 0.00 39.45 2.29
9 10 9.525826 AATCTAGACCATTGAGATTCAACTTTT 57.474 29.630 0.00 0.00 39.45 2.27
10 11 9.525826 AAATCTAGACCATTGAGATTCAACTTT 57.474 29.630 0.00 0.00 39.45 2.66
11 12 9.525826 AAAATCTAGACCATTGAGATTCAACTT 57.474 29.630 0.00 0.00 39.45 2.66
14 15 9.113838 GCTAAAATCTAGACCATTGAGATTCAA 57.886 33.333 0.00 0.00 38.64 2.69
15 16 8.267183 TGCTAAAATCTAGACCATTGAGATTCA 58.733 33.333 0.00 0.00 38.64 2.57
16 17 8.668510 TGCTAAAATCTAGACCATTGAGATTC 57.331 34.615 0.00 0.00 38.64 2.52
17 18 9.282569 GATGCTAAAATCTAGACCATTGAGATT 57.717 33.333 0.00 0.00 40.77 2.40
18 19 8.435187 TGATGCTAAAATCTAGACCATTGAGAT 58.565 33.333 0.00 0.00 0.00 2.75
19 20 7.795047 TGATGCTAAAATCTAGACCATTGAGA 58.205 34.615 0.00 0.00 0.00 3.27
20 21 8.618702 ATGATGCTAAAATCTAGACCATTGAG 57.381 34.615 0.00 0.00 0.00 3.02
23 24 9.458727 CCATATGATGCTAAAATCTAGACCATT 57.541 33.333 3.65 0.00 0.00 3.16
24 25 8.051535 CCCATATGATGCTAAAATCTAGACCAT 58.948 37.037 3.65 0.00 0.00 3.55
25 26 7.397221 CCCATATGATGCTAAAATCTAGACCA 58.603 38.462 3.65 0.00 0.00 4.02
26 27 6.317391 GCCCATATGATGCTAAAATCTAGACC 59.683 42.308 3.65 0.00 0.00 3.85
27 28 6.317391 GGCCCATATGATGCTAAAATCTAGAC 59.683 42.308 3.65 0.00 0.00 2.59
28 29 6.012596 TGGCCCATATGATGCTAAAATCTAGA 60.013 38.462 3.65 0.00 0.00 2.43
29 30 6.182627 TGGCCCATATGATGCTAAAATCTAG 58.817 40.000 3.65 0.00 0.00 2.43
30 31 6.138391 TGGCCCATATGATGCTAAAATCTA 57.862 37.500 3.65 0.00 0.00 1.98
31 32 5.001833 TGGCCCATATGATGCTAAAATCT 57.998 39.130 3.65 0.00 0.00 2.40
32 33 4.159135 CCTGGCCCATATGATGCTAAAATC 59.841 45.833 3.65 0.00 0.00 2.17
33 34 4.091549 CCTGGCCCATATGATGCTAAAAT 58.908 43.478 3.65 0.00 0.00 1.82
34 35 3.117169 ACCTGGCCCATATGATGCTAAAA 60.117 43.478 3.65 0.00 0.00 1.52
35 36 2.446666 ACCTGGCCCATATGATGCTAAA 59.553 45.455 3.65 0.00 0.00 1.85
36 37 2.065007 ACCTGGCCCATATGATGCTAA 58.935 47.619 3.65 0.00 0.00 3.09
37 38 1.746157 ACCTGGCCCATATGATGCTA 58.254 50.000 3.65 3.78 0.00 3.49
38 39 0.855598 AACCTGGCCCATATGATGCT 59.144 50.000 3.65 0.00 0.00 3.79
39 40 1.615392 GAAACCTGGCCCATATGATGC 59.385 52.381 3.65 6.47 0.00 3.91
40 41 2.948115 TGAAACCTGGCCCATATGATG 58.052 47.619 3.65 0.00 0.00 3.07
41 42 3.686227 TTGAAACCTGGCCCATATGAT 57.314 42.857 3.65 0.00 0.00 2.45
42 43 3.464720 TTTGAAACCTGGCCCATATGA 57.535 42.857 3.65 0.00 0.00 2.15
43 44 4.758773 ATTTTGAAACCTGGCCCATATG 57.241 40.909 0.00 0.00 0.00 1.78
44 45 4.164030 GGAATTTTGAAACCTGGCCCATAT 59.836 41.667 0.00 0.00 0.00 1.78
45 46 3.517500 GGAATTTTGAAACCTGGCCCATA 59.482 43.478 0.00 0.00 0.00 2.74
46 47 2.305635 GGAATTTTGAAACCTGGCCCAT 59.694 45.455 0.00 0.00 0.00 4.00
47 48 1.696884 GGAATTTTGAAACCTGGCCCA 59.303 47.619 0.00 0.00 0.00 5.36
48 49 1.696884 TGGAATTTTGAAACCTGGCCC 59.303 47.619 0.00 0.00 0.00 5.80
49 50 3.701205 ATGGAATTTTGAAACCTGGCC 57.299 42.857 0.00 0.00 0.00 5.36
67 68 9.622004 GCAATAGAGAATGACATCCATAAAATG 57.378 33.333 0.00 0.00 34.45 2.32
68 69 9.584008 AGCAATAGAGAATGACATCCATAAAAT 57.416 29.630 0.00 0.00 34.45 1.82
69 70 8.985315 AGCAATAGAGAATGACATCCATAAAA 57.015 30.769 0.00 0.00 34.45 1.52
70 71 9.716531 CTAGCAATAGAGAATGACATCCATAAA 57.283 33.333 0.00 0.00 34.45 1.40
71 72 9.093458 TCTAGCAATAGAGAATGACATCCATAA 57.907 33.333 0.00 0.00 34.45 1.90
72 73 8.655935 TCTAGCAATAGAGAATGACATCCATA 57.344 34.615 0.00 0.00 34.45 2.74
73 74 7.550597 TCTAGCAATAGAGAATGACATCCAT 57.449 36.000 0.00 0.00 36.99 3.41
74 75 6.983906 TCTAGCAATAGAGAATGACATCCA 57.016 37.500 0.00 0.00 0.00 3.41
75 76 8.093307 TGAATCTAGCAATAGAGAATGACATCC 58.907 37.037 0.00 0.00 0.00 3.51
76 77 9.142515 CTGAATCTAGCAATAGAGAATGACATC 57.857 37.037 0.00 0.00 0.00 3.06
77 78 8.868103 TCTGAATCTAGCAATAGAGAATGACAT 58.132 33.333 0.00 0.00 0.00 3.06
78 79 8.140628 GTCTGAATCTAGCAATAGAGAATGACA 58.859 37.037 0.00 0.00 0.00 3.58
79 80 7.598493 GGTCTGAATCTAGCAATAGAGAATGAC 59.402 40.741 0.00 0.00 0.00 3.06
80 81 7.256119 GGGTCTGAATCTAGCAATAGAGAATGA 60.256 40.741 0.00 0.00 0.00 2.57
81 82 6.873076 GGGTCTGAATCTAGCAATAGAGAATG 59.127 42.308 0.00 0.00 0.00 2.67
82 83 6.786959 AGGGTCTGAATCTAGCAATAGAGAAT 59.213 38.462 0.00 0.00 0.00 2.40
83 84 6.139671 AGGGTCTGAATCTAGCAATAGAGAA 58.860 40.000 0.00 0.00 0.00 2.87
84 85 5.710646 AGGGTCTGAATCTAGCAATAGAGA 58.289 41.667 0.00 0.00 0.00 3.10
85 86 7.156876 CTAGGGTCTGAATCTAGCAATAGAG 57.843 44.000 0.00 0.00 0.00 2.43
101 102 0.631753 TAGTGGCAGAGCTAGGGTCT 59.368 55.000 0.00 0.00 41.33 3.85
102 103 1.486211 TTAGTGGCAGAGCTAGGGTC 58.514 55.000 0.00 0.00 0.00 4.46
103 104 1.952621 TTTAGTGGCAGAGCTAGGGT 58.047 50.000 0.00 0.00 0.00 4.34
104 105 2.027192 TGTTTTAGTGGCAGAGCTAGGG 60.027 50.000 0.00 0.00 0.00 3.53
105 106 3.334583 TGTTTTAGTGGCAGAGCTAGG 57.665 47.619 0.00 0.00 0.00 3.02
106 107 3.064545 GCATGTTTTAGTGGCAGAGCTAG 59.935 47.826 0.00 0.00 0.00 3.42
107 108 3.009723 GCATGTTTTAGTGGCAGAGCTA 58.990 45.455 0.00 0.00 0.00 3.32
108 109 1.815003 GCATGTTTTAGTGGCAGAGCT 59.185 47.619 0.00 0.00 0.00 4.09
109 110 1.541147 TGCATGTTTTAGTGGCAGAGC 59.459 47.619 0.00 0.00 0.00 4.09
110 111 3.921119 TTGCATGTTTTAGTGGCAGAG 57.079 42.857 0.00 0.00 35.68 3.35
111 112 3.382865 TGTTTGCATGTTTTAGTGGCAGA 59.617 39.130 0.00 0.00 35.68 4.26
112 113 3.715495 TGTTTGCATGTTTTAGTGGCAG 58.285 40.909 0.00 0.00 35.68 4.85
113 114 3.808466 TGTTTGCATGTTTTAGTGGCA 57.192 38.095 0.00 0.00 0.00 4.92
114 115 4.119136 AGTTGTTTGCATGTTTTAGTGGC 58.881 39.130 0.00 0.00 0.00 5.01
115 116 6.269315 TGTAGTTGTTTGCATGTTTTAGTGG 58.731 36.000 0.00 0.00 0.00 4.00
116 117 7.748031 TTGTAGTTGTTTGCATGTTTTAGTG 57.252 32.000 0.00 0.00 0.00 2.74
117 118 8.652463 GTTTTGTAGTTGTTTGCATGTTTTAGT 58.348 29.630 0.00 0.00 0.00 2.24
118 119 8.868916 AGTTTTGTAGTTGTTTGCATGTTTTAG 58.131 29.630 0.00 0.00 0.00 1.85
119 120 8.764524 AGTTTTGTAGTTGTTTGCATGTTTTA 57.235 26.923 0.00 0.00 0.00 1.52
120 121 7.665561 AGTTTTGTAGTTGTTTGCATGTTTT 57.334 28.000 0.00 0.00 0.00 2.43
121 122 8.764524 TTAGTTTTGTAGTTGTTTGCATGTTT 57.235 26.923 0.00 0.00 0.00 2.83
122 123 8.940768 ATTAGTTTTGTAGTTGTTTGCATGTT 57.059 26.923 0.00 0.00 0.00 2.71
123 124 8.940768 AATTAGTTTTGTAGTTGTTTGCATGT 57.059 26.923 0.00 0.00 0.00 3.21
126 127 9.303537 GGTTAATTAGTTTTGTAGTTGTTTGCA 57.696 29.630 0.00 0.00 0.00 4.08
127 128 9.303537 TGGTTAATTAGTTTTGTAGTTGTTTGC 57.696 29.630 0.00 0.00 0.00 3.68
131 132 8.139350 GCCTTGGTTAATTAGTTTTGTAGTTGT 58.861 33.333 0.00 0.00 0.00 3.32
132 133 8.138712 TGCCTTGGTTAATTAGTTTTGTAGTTG 58.861 33.333 0.00 0.00 0.00 3.16
133 134 8.240267 TGCCTTGGTTAATTAGTTTTGTAGTT 57.760 30.769 0.00 0.00 0.00 2.24
134 135 7.826918 TGCCTTGGTTAATTAGTTTTGTAGT 57.173 32.000 0.00 0.00 0.00 2.73
135 136 9.535878 TTTTGCCTTGGTTAATTAGTTTTGTAG 57.464 29.630 0.00 0.00 0.00 2.74
137 138 8.972458 ATTTTGCCTTGGTTAATTAGTTTTGT 57.028 26.923 0.00 0.00 0.00 2.83
138 139 9.050601 TGATTTTGCCTTGGTTAATTAGTTTTG 57.949 29.630 0.00 0.00 0.00 2.44
139 140 9.620259 TTGATTTTGCCTTGGTTAATTAGTTTT 57.380 25.926 0.00 0.00 0.00 2.43
140 141 9.051679 GTTGATTTTGCCTTGGTTAATTAGTTT 57.948 29.630 0.00 0.00 0.00 2.66
141 142 8.428852 AGTTGATTTTGCCTTGGTTAATTAGTT 58.571 29.630 0.00 0.00 0.00 2.24
142 143 7.872483 CAGTTGATTTTGCCTTGGTTAATTAGT 59.128 33.333 0.00 0.00 0.00 2.24
143 144 7.148590 GCAGTTGATTTTGCCTTGGTTAATTAG 60.149 37.037 0.00 0.00 34.28 1.73
144 145 6.648725 GCAGTTGATTTTGCCTTGGTTAATTA 59.351 34.615 0.00 0.00 34.28 1.40
145 146 5.469760 GCAGTTGATTTTGCCTTGGTTAATT 59.530 36.000 0.00 0.00 34.28 1.40
146 147 4.996758 GCAGTTGATTTTGCCTTGGTTAAT 59.003 37.500 0.00 0.00 34.28 1.40
147 148 4.141846 TGCAGTTGATTTTGCCTTGGTTAA 60.142 37.500 0.00 0.00 39.54 2.01
148 149 3.386078 TGCAGTTGATTTTGCCTTGGTTA 59.614 39.130 0.00 0.00 39.54 2.85
149 150 2.170187 TGCAGTTGATTTTGCCTTGGTT 59.830 40.909 0.00 0.00 39.54 3.67
150 151 1.761784 TGCAGTTGATTTTGCCTTGGT 59.238 42.857 0.00 0.00 39.54 3.67
151 152 2.529780 TGCAGTTGATTTTGCCTTGG 57.470 45.000 0.00 0.00 39.54 3.61
152 153 4.879104 TTTTGCAGTTGATTTTGCCTTG 57.121 36.364 0.00 0.00 39.54 3.61
153 154 4.516321 GGATTTTGCAGTTGATTTTGCCTT 59.484 37.500 0.00 0.00 39.54 4.35
154 155 4.067192 GGATTTTGCAGTTGATTTTGCCT 58.933 39.130 0.00 0.00 39.54 4.75
155 156 3.814283 TGGATTTTGCAGTTGATTTTGCC 59.186 39.130 0.00 0.00 39.54 4.52
156 157 5.207033 GTTGGATTTTGCAGTTGATTTTGC 58.793 37.500 0.00 0.00 40.67 3.68
157 158 6.360844 TGTTGGATTTTGCAGTTGATTTTG 57.639 33.333 0.00 0.00 0.00 2.44
158 159 6.373774 TGTTGTTGGATTTTGCAGTTGATTTT 59.626 30.769 0.00 0.00 0.00 1.82
159 160 5.879223 TGTTGTTGGATTTTGCAGTTGATTT 59.121 32.000 0.00 0.00 0.00 2.17
160 161 5.426504 TGTTGTTGGATTTTGCAGTTGATT 58.573 33.333 0.00 0.00 0.00 2.57
161 162 5.021033 TGTTGTTGGATTTTGCAGTTGAT 57.979 34.783 0.00 0.00 0.00 2.57
162 163 4.462508 TGTTGTTGGATTTTGCAGTTGA 57.537 36.364 0.00 0.00 0.00 3.18
163 164 4.024725 CCATGTTGTTGGATTTTGCAGTTG 60.025 41.667 0.00 0.00 39.25 3.16
164 165 4.128643 CCATGTTGTTGGATTTTGCAGTT 58.871 39.130 0.00 0.00 39.25 3.16
165 166 3.134442 ACCATGTTGTTGGATTTTGCAGT 59.866 39.130 0.00 0.00 39.25 4.40
166 167 3.731089 ACCATGTTGTTGGATTTTGCAG 58.269 40.909 0.00 0.00 39.25 4.41
167 168 3.834489 ACCATGTTGTTGGATTTTGCA 57.166 38.095 0.00 0.00 39.25 4.08
168 169 4.125703 TGAACCATGTTGTTGGATTTTGC 58.874 39.130 0.00 0.00 39.25 3.68
169 170 5.990386 TGATGAACCATGTTGTTGGATTTTG 59.010 36.000 0.00 0.00 39.25 2.44
170 171 6.172136 TGATGAACCATGTTGTTGGATTTT 57.828 33.333 0.00 0.00 39.25 1.82
171 172 5.804944 TGATGAACCATGTTGTTGGATTT 57.195 34.783 0.00 0.00 39.25 2.17
172 173 5.481122 TCATGATGAACCATGTTGTTGGATT 59.519 36.000 0.00 0.00 43.22 3.01
173 174 5.018149 TCATGATGAACCATGTTGTTGGAT 58.982 37.500 0.00 0.00 43.22 3.41
174 175 4.218200 GTCATGATGAACCATGTTGTTGGA 59.782 41.667 0.00 0.00 43.22 3.53
175 176 4.022155 TGTCATGATGAACCATGTTGTTGG 60.022 41.667 0.00 0.00 43.22 3.77
176 177 5.123805 TGTCATGATGAACCATGTTGTTG 57.876 39.130 0.00 0.00 43.22 3.33
177 178 5.716094 CATGTCATGATGAACCATGTTGTT 58.284 37.500 14.47 0.00 43.22 2.83
178 179 4.381185 GCATGTCATGATGAACCATGTTGT 60.381 41.667 20.34 0.00 43.22 3.32
179 180 4.109766 GCATGTCATGATGAACCATGTTG 58.890 43.478 20.34 4.97 43.22 3.33
180 181 3.764972 TGCATGTCATGATGAACCATGTT 59.235 39.130 20.34 0.00 43.22 2.71
181 182 3.358118 TGCATGTCATGATGAACCATGT 58.642 40.909 20.34 0.00 43.22 3.21
182 183 3.380320 ACTGCATGTCATGATGAACCATG 59.620 43.478 17.24 17.07 43.88 3.66
183 184 3.628008 ACTGCATGTCATGATGAACCAT 58.372 40.909 17.24 0.00 0.00 3.55
184 185 3.076079 ACTGCATGTCATGATGAACCA 57.924 42.857 17.24 2.97 0.00 3.67
185 186 5.297527 TCATTACTGCATGTCATGATGAACC 59.702 40.000 17.24 0.00 35.19 3.62
186 187 6.367686 TCATTACTGCATGTCATGATGAAC 57.632 37.500 17.24 0.00 35.19 3.18
187 188 6.768861 TGATCATTACTGCATGTCATGATGAA 59.231 34.615 20.79 11.95 45.05 2.57
188 189 6.292923 TGATCATTACTGCATGTCATGATGA 58.707 36.000 20.79 15.04 45.05 2.92
189 190 6.554334 TGATCATTACTGCATGTCATGATG 57.446 37.500 20.79 10.46 45.05 3.07
190 191 7.168905 AGATGATCATTACTGCATGTCATGAT 58.831 34.615 17.24 18.04 46.65 2.45
191 192 6.531021 AGATGATCATTACTGCATGTCATGA 58.469 36.000 17.24 12.46 41.69 3.07
192 193 6.803154 AGATGATCATTACTGCATGTCATG 57.197 37.500 10.14 8.56 31.05 3.07
193 194 8.913487 TTTAGATGATCATTACTGCATGTCAT 57.087 30.769 10.14 0.00 32.35 3.06
194 195 8.735692 TTTTAGATGATCATTACTGCATGTCA 57.264 30.769 10.14 0.00 0.00 3.58
195 196 9.443283 GTTTTTAGATGATCATTACTGCATGTC 57.557 33.333 10.14 0.00 0.00 3.06
196 197 8.408601 GGTTTTTAGATGATCATTACTGCATGT 58.591 33.333 10.14 0.00 0.00 3.21
197 198 7.864379 GGGTTTTTAGATGATCATTACTGCATG 59.136 37.037 10.14 0.00 0.00 4.06
198 199 7.781693 AGGGTTTTTAGATGATCATTACTGCAT 59.218 33.333 10.14 0.00 0.00 3.96
199 200 7.118723 AGGGTTTTTAGATGATCATTACTGCA 58.881 34.615 10.14 0.00 0.00 4.41
200 201 7.500559 AGAGGGTTTTTAGATGATCATTACTGC 59.499 37.037 10.14 0.00 0.00 4.40
201 202 8.970859 AGAGGGTTTTTAGATGATCATTACTG 57.029 34.615 10.14 0.00 0.00 2.74
203 204 8.979574 CGTAGAGGGTTTTTAGATGATCATTAC 58.020 37.037 10.14 2.83 0.00 1.89
204 205 7.656137 GCGTAGAGGGTTTTTAGATGATCATTA 59.344 37.037 10.14 1.88 0.00 1.90
205 206 6.483640 GCGTAGAGGGTTTTTAGATGATCATT 59.516 38.462 10.14 2.85 0.00 2.57
206 207 5.992217 GCGTAGAGGGTTTTTAGATGATCAT 59.008 40.000 8.25 8.25 0.00 2.45
207 208 5.357257 GCGTAGAGGGTTTTTAGATGATCA 58.643 41.667 0.00 0.00 0.00 2.92
208 209 4.750598 GGCGTAGAGGGTTTTTAGATGATC 59.249 45.833 0.00 0.00 0.00 2.92
209 210 4.444449 GGGCGTAGAGGGTTTTTAGATGAT 60.444 45.833 0.00 0.00 0.00 2.45
210 211 3.118519 GGGCGTAGAGGGTTTTTAGATGA 60.119 47.826 0.00 0.00 0.00 2.92
211 212 3.118371 AGGGCGTAGAGGGTTTTTAGATG 60.118 47.826 0.00 0.00 0.00 2.90
212 213 3.113043 AGGGCGTAGAGGGTTTTTAGAT 58.887 45.455 0.00 0.00 0.00 1.98
213 214 2.543635 AGGGCGTAGAGGGTTTTTAGA 58.456 47.619 0.00 0.00 0.00 2.10
214 215 3.196254 TGTAGGGCGTAGAGGGTTTTTAG 59.804 47.826 0.00 0.00 0.00 1.85
215 216 3.172339 TGTAGGGCGTAGAGGGTTTTTA 58.828 45.455 0.00 0.00 0.00 1.52
216 217 1.980036 TGTAGGGCGTAGAGGGTTTTT 59.020 47.619 0.00 0.00 0.00 1.94
217 218 1.648116 TGTAGGGCGTAGAGGGTTTT 58.352 50.000 0.00 0.00 0.00 2.43
218 219 1.875488 ATGTAGGGCGTAGAGGGTTT 58.125 50.000 0.00 0.00 0.00 3.27
219 220 2.761786 TATGTAGGGCGTAGAGGGTT 57.238 50.000 0.00 0.00 0.00 4.11
220 221 2.761786 TTATGTAGGGCGTAGAGGGT 57.238 50.000 0.00 0.00 0.00 4.34
221 222 3.162666 TCATTATGTAGGGCGTAGAGGG 58.837 50.000 0.00 0.00 0.00 4.30
222 223 4.866508 TTCATTATGTAGGGCGTAGAGG 57.133 45.455 0.00 0.00 0.00 3.69
223 224 5.047306 TCCATTCATTATGTAGGGCGTAGAG 60.047 44.000 0.00 0.00 31.99 2.43
224 225 4.836175 TCCATTCATTATGTAGGGCGTAGA 59.164 41.667 0.00 0.00 31.99 2.59
225 226 5.147330 TCCATTCATTATGTAGGGCGTAG 57.853 43.478 0.00 0.00 31.99 3.51
226 227 5.554437 TTCCATTCATTATGTAGGGCGTA 57.446 39.130 0.00 0.00 31.99 4.42
227 228 4.431416 TTCCATTCATTATGTAGGGCGT 57.569 40.909 0.00 0.00 31.99 5.68
228 229 4.319477 CGTTTCCATTCATTATGTAGGGCG 60.319 45.833 0.00 0.00 31.99 6.13
229 230 4.819630 TCGTTTCCATTCATTATGTAGGGC 59.180 41.667 0.00 0.00 31.99 5.19
230 231 6.055588 AGTCGTTTCCATTCATTATGTAGGG 58.944 40.000 0.00 0.00 31.99 3.53
231 232 8.548721 GTTAGTCGTTTCCATTCATTATGTAGG 58.451 37.037 0.00 0.00 31.99 3.18
232 233 8.548721 GGTTAGTCGTTTCCATTCATTATGTAG 58.451 37.037 0.00 0.00 31.99 2.74
233 234 8.041919 TGGTTAGTCGTTTCCATTCATTATGTA 58.958 33.333 0.00 0.00 31.99 2.29
234 235 6.882140 TGGTTAGTCGTTTCCATTCATTATGT 59.118 34.615 0.00 0.00 31.99 2.29
235 236 7.315247 TGGTTAGTCGTTTCCATTCATTATG 57.685 36.000 0.00 0.00 0.00 1.90
236 237 9.273016 CTATGGTTAGTCGTTTCCATTCATTAT 57.727 33.333 0.00 0.00 40.54 1.28
237 238 8.262227 ACTATGGTTAGTCGTTTCCATTCATTA 58.738 33.333 0.00 0.00 40.54 1.90
238 239 7.110155 ACTATGGTTAGTCGTTTCCATTCATT 58.890 34.615 0.00 0.00 40.54 2.57
239 240 6.650120 ACTATGGTTAGTCGTTTCCATTCAT 58.350 36.000 0.00 0.00 40.54 2.57
240 241 6.045072 ACTATGGTTAGTCGTTTCCATTCA 57.955 37.500 0.00 0.00 40.54 2.57
241 242 6.585389 GACTATGGTTAGTCGTTTCCATTC 57.415 41.667 0.00 0.00 43.59 2.67
275 276 1.722011 CGTGGATGTGAACTGGGTAC 58.278 55.000 0.00 0.00 0.00 3.34
288 289 2.134287 ATGACTAGGCGGCGTGGAT 61.134 57.895 13.02 0.00 0.00 3.41
294 295 1.884926 GAGCACATGACTAGGCGGC 60.885 63.158 0.00 0.00 0.00 6.53
312 313 2.433838 CTGCTCACCACCTGCGAG 60.434 66.667 0.00 0.00 0.00 5.03
313 314 2.807107 AACTGCTCACCACCTGCGA 61.807 57.895 0.00 0.00 0.00 5.10
315 316 2.912624 GCAACTGCTCACCACCTGC 61.913 63.158 0.00 0.00 38.21 4.85
316 317 2.263741 GGCAACTGCTCACCACCTG 61.264 63.158 1.06 0.00 41.70 4.00
318 319 0.322456 TATGGCAACTGCTCACCACC 60.322 55.000 1.06 0.00 41.70 4.61
319 320 1.089920 CTATGGCAACTGCTCACCAC 58.910 55.000 1.06 0.00 41.70 4.16
320 321 0.983467 TCTATGGCAACTGCTCACCA 59.017 50.000 1.06 0.00 41.70 4.17
321 322 1.945394 CATCTATGGCAACTGCTCACC 59.055 52.381 1.06 0.00 41.70 4.02
322 323 2.611292 GTCATCTATGGCAACTGCTCAC 59.389 50.000 1.06 0.00 41.70 3.51
323 324 2.420547 GGTCATCTATGGCAACTGCTCA 60.421 50.000 1.06 0.00 41.70 4.26
324 325 2.158842 AGGTCATCTATGGCAACTGCTC 60.159 50.000 1.06 0.00 41.70 4.26
325 326 1.842562 AGGTCATCTATGGCAACTGCT 59.157 47.619 1.06 0.00 41.70 4.24
326 327 2.216898 GAGGTCATCTATGGCAACTGC 58.783 52.381 0.00 0.00 41.14 4.40
327 328 3.201290 GTGAGGTCATCTATGGCAACTG 58.799 50.000 0.00 0.00 33.08 3.16
328 329 2.159043 CGTGAGGTCATCTATGGCAACT 60.159 50.000 0.00 0.00 33.08 3.16
329 330 2.205074 CGTGAGGTCATCTATGGCAAC 58.795 52.381 0.00 0.00 33.08 4.17
330 331 1.473257 GCGTGAGGTCATCTATGGCAA 60.473 52.381 0.00 0.00 33.08 4.52
331 332 0.104855 GCGTGAGGTCATCTATGGCA 59.895 55.000 0.00 0.00 33.08 4.92
332 333 0.601311 GGCGTGAGGTCATCTATGGC 60.601 60.000 0.00 0.00 0.00 4.40
354 355 0.036306 ACCCGCTTCCTTCGACAAAT 59.964 50.000 0.00 0.00 0.00 2.32
372 373 1.202076 GCTCTTTTGTGCCGCATCTAC 60.202 52.381 0.00 0.00 33.24 2.59
394 395 4.807643 GCCATGTCTTTCTCCTAACTTGGT 60.808 45.833 0.00 0.00 38.52 3.67
411 412 5.068723 GGAGATGAAAAGATGATTGCCATGT 59.931 40.000 0.00 0.00 35.17 3.21
417 418 7.368833 GCATAAGGGAGATGAAAAGATGATTG 58.631 38.462 0.00 0.00 0.00 2.67
418 419 6.492772 GGCATAAGGGAGATGAAAAGATGATT 59.507 38.462 0.00 0.00 0.00 2.57
420 421 5.103982 TGGCATAAGGGAGATGAAAAGATGA 60.104 40.000 0.00 0.00 0.00 2.92
436 437 2.549754 CCCGCTCAAGTTATGGCATAAG 59.450 50.000 19.79 9.23 0.00 1.73
439 440 1.103398 GCCCGCTCAAGTTATGGCAT 61.103 55.000 4.88 4.88 38.73 4.40
447 448 2.629656 GCAATGTGCCCGCTCAAGT 61.630 57.895 0.00 0.00 37.42 3.16
455 456 1.067635 CACCTGTAAAGCAATGTGCCC 60.068 52.381 0.00 0.00 46.52 5.36
456 457 1.613437 ACACCTGTAAAGCAATGTGCC 59.387 47.619 0.00 0.00 46.52 5.01
459 460 4.394920 CCGAATACACCTGTAAAGCAATGT 59.605 41.667 0.00 0.00 33.76 2.71
471 472 2.389962 TTTTAGCGCCGAATACACCT 57.610 45.000 2.29 0.00 0.00 4.00
473 474 3.062909 TGTGATTTTAGCGCCGAATACAC 59.937 43.478 2.29 9.49 0.00 2.90
477 478 1.400494 GGTGTGATTTTAGCGCCGAAT 59.600 47.619 2.29 1.32 0.00 3.34
481 482 0.800012 TTCGGTGTGATTTTAGCGCC 59.200 50.000 2.29 0.00 37.68 6.53
484 485 3.500680 TGACCTTTCGGTGTGATTTTAGC 59.499 43.478 0.00 0.00 45.73 3.09
486 487 5.067273 ACATGACCTTTCGGTGTGATTTTA 58.933 37.500 0.00 0.00 45.73 1.52
493 494 1.953686 CCAAACATGACCTTTCGGTGT 59.046 47.619 0.00 0.00 45.73 4.16
494 495 2.226330 TCCAAACATGACCTTTCGGTG 58.774 47.619 0.00 0.00 45.73 4.94
498 499 4.240096 CTGCATTCCAAACATGACCTTTC 58.760 43.478 0.00 0.00 0.00 2.62
504 505 1.630223 TGGCTGCATTCCAAACATGA 58.370 45.000 0.00 0.00 0.00 3.07
530 531 1.066471 TTTTGGTAGGGCGTAAGGGT 58.934 50.000 0.00 0.00 38.28 4.34
533 534 4.381185 GGGAAATTTTTGGTAGGGCGTAAG 60.381 45.833 0.00 0.00 43.44 2.34
538 539 1.206132 CGGGGAAATTTTTGGTAGGGC 59.794 52.381 0.00 0.00 0.00 5.19
539 540 2.531771 ACGGGGAAATTTTTGGTAGGG 58.468 47.619 0.00 0.00 0.00 3.53
540 541 3.574826 TCAACGGGGAAATTTTTGGTAGG 59.425 43.478 0.00 0.00 0.00 3.18
541 542 4.279922 AGTCAACGGGGAAATTTTTGGTAG 59.720 41.667 0.00 0.00 0.00 3.18
542 543 4.038162 CAGTCAACGGGGAAATTTTTGGTA 59.962 41.667 0.00 0.00 0.00 3.25
543 544 3.035363 AGTCAACGGGGAAATTTTTGGT 58.965 40.909 0.00 0.00 0.00 3.67
544 545 3.389221 CAGTCAACGGGGAAATTTTTGG 58.611 45.455 0.00 0.00 0.00 3.28
551 552 2.871096 AATAGCAGTCAACGGGGAAA 57.129 45.000 0.00 0.00 0.00 3.13
554 555 2.494059 CCATAATAGCAGTCAACGGGG 58.506 52.381 0.00 0.00 0.00 5.73
556 557 1.873591 GGCCATAATAGCAGTCAACGG 59.126 52.381 0.00 0.00 0.00 4.44
564 565 2.964464 CAAATGGGTGGCCATAATAGCA 59.036 45.455 9.72 0.00 0.00 3.49
565 566 2.299867 CCAAATGGGTGGCCATAATAGC 59.700 50.000 9.72 0.00 0.00 2.97
569 570 2.770802 CAATCCAAATGGGTGGCCATAA 59.229 45.455 9.72 0.00 38.68 1.90
572 573 0.908656 CCAATCCAAATGGGTGGCCA 60.909 55.000 0.00 0.00 38.68 5.36
575 576 0.249955 GTGCCAATCCAAATGGGTGG 59.750 55.000 15.07 15.07 41.14 4.61
576 577 0.249955 GGTGCCAATCCAAATGGGTG 59.750 55.000 0.00 0.00 38.44 4.61
577 578 0.178909 TGGTGCCAATCCAAATGGGT 60.179 50.000 0.00 0.00 38.44 4.51
581 582 4.325972 GAAATGTTGGTGCCAATCCAAAT 58.674 39.130 6.95 0.00 44.91 2.32
588 589 2.351253 CGATTCGAAATGTTGGTGCCAA 60.351 45.455 0.00 0.00 0.00 4.52
589 590 1.198867 CGATTCGAAATGTTGGTGCCA 59.801 47.619 0.00 0.00 0.00 4.92
631 633 3.351450 GGGTGTGAAAGCCGAACC 58.649 61.111 0.00 0.00 36.51 3.62
651 653 1.490693 CGCCGCAATCTCGCTAACAT 61.491 55.000 0.00 0.00 0.00 2.71
652 654 2.164663 CGCCGCAATCTCGCTAACA 61.165 57.895 0.00 0.00 0.00 2.41
700 703 0.035152 TTGGATCATGCTTCAGCCGT 60.035 50.000 0.00 0.00 41.18 5.68
701 704 1.097232 TTTGGATCATGCTTCAGCCG 58.903 50.000 0.00 0.00 41.18 5.52
726 729 7.113658 ACATGTCTCTCTTCGGTATATTTGT 57.886 36.000 0.00 0.00 0.00 2.83
736 739 3.063180 GGCAAATGACATGTCTCTCTTCG 59.937 47.826 25.55 9.48 0.00 3.79
740 743 2.094894 CGTGGCAAATGACATGTCTCTC 59.905 50.000 25.55 10.60 35.37 3.20
748 751 0.380024 CACACACGTGGCAAATGACA 59.620 50.000 21.57 0.00 39.64 3.58
788 793 2.941064 GTCCAAATTAAGTAGGCGTCCC 59.059 50.000 0.00 0.00 0.00 4.46
797 802 8.637986 TGCAGAACAATTTAGTCCAAATTAAGT 58.362 29.630 0.00 0.00 43.51 2.24
886 893 3.550030 GGGAAGATGTTTCGGTTGTGTTG 60.550 47.826 0.00 0.00 0.00 3.33
929 936 4.451096 TGTTTCCGTTTGAATCTGCTCTAC 59.549 41.667 0.00 0.00 31.67 2.59
932 939 3.896648 TGTTTCCGTTTGAATCTGCTC 57.103 42.857 0.00 0.00 31.67 4.26
935 949 3.723764 CACGTTGTTTCCGTTTGAATCTG 59.276 43.478 0.00 0.00 36.17 2.90
992 1006 0.804544 TTTCGTCGGCATGGTCGATC 60.805 55.000 0.00 0.00 42.90 3.69
993 1007 0.179084 ATTTCGTCGGCATGGTCGAT 60.179 50.000 0.00 0.00 42.90 3.59
994 1008 0.456628 TATTTCGTCGGCATGGTCGA 59.543 50.000 0.00 0.00 37.31 4.20
995 1009 0.575390 GTATTTCGTCGGCATGGTCG 59.425 55.000 0.00 0.00 0.00 4.79
1099 1113 2.202987 GATGGCGTGCTGGGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
1146 1160 2.057408 CGGAGGAGAGGCTTGCTCT 61.057 63.158 14.28 0.00 36.00 4.09
1147 1161 2.498726 CGGAGGAGAGGCTTGCTC 59.501 66.667 8.82 8.82 35.07 4.26
1173 1190 7.440856 GGAGATTGAATTGAAGTAGCTAGAAGG 59.559 40.741 0.00 0.00 0.00 3.46
1348 1385 4.030134 AGACCGACAACGATCAGAATAC 57.970 45.455 0.00 0.00 42.66 1.89
1349 1386 3.945921 AGAGACCGACAACGATCAGAATA 59.054 43.478 0.00 0.00 42.66 1.75
1365 1402 2.435059 GCCGGAAGCACAGAGACC 60.435 66.667 5.05 0.00 42.97 3.85
1398 1435 2.506472 GAGGCCCCCTCGATGAAC 59.494 66.667 0.00 0.00 41.08 3.18
1419 1456 1.425448 TCGATCTGCCTCCTGATCCTA 59.575 52.381 0.00 0.00 41.03 2.94
1476 1513 1.725557 CGTCGACGGTGATCAGGGAT 61.726 60.000 29.70 0.00 35.37 3.85
1477 1514 2.404186 CGTCGACGGTGATCAGGGA 61.404 63.158 29.70 0.00 35.37 4.20
1582 1623 0.516877 CTGCACGAAAATCGAAGGCA 59.483 50.000 6.78 11.35 43.74 4.75
1588 1629 2.043411 CACAAACCTGCACGAAAATCG 58.957 47.619 0.00 0.00 46.93 3.34
1678 1719 5.397672 CCTTGATCTCATCCTCAATCTTGGT 60.398 44.000 0.00 0.00 31.39 3.67
1686 1727 5.901853 ACTTATCACCTTGATCTCATCCTCA 59.098 40.000 0.00 0.00 38.26 3.86
1753 2079 2.081462 ACGGCTAACCAGTGTTAATGC 58.919 47.619 0.00 0.00 36.54 3.56
1755 2081 3.412237 ACACGGCTAACCAGTGTTAAT 57.588 42.857 6.88 0.00 45.28 1.40
1789 2115 7.062749 TCTATCCAACATATACAGTTCCCAC 57.937 40.000 0.00 0.00 0.00 4.61
1816 2142 7.324178 AGCTGAAGAGTACAATTACTTGGTAG 58.676 38.462 0.00 0.00 38.77 3.18
1817 2143 7.241042 AGCTGAAGAGTACAATTACTTGGTA 57.759 36.000 0.00 0.00 38.77 3.25
1818 2144 6.115448 AGCTGAAGAGTACAATTACTTGGT 57.885 37.500 0.00 0.00 38.77 3.67
1819 2145 7.063544 GTGTAGCTGAAGAGTACAATTACTTGG 59.936 40.741 0.00 0.00 38.77 3.61
1829 2158 4.522722 ACTTGGTGTAGCTGAAGAGTAC 57.477 45.455 0.00 0.00 0.00 2.73
1870 2241 9.927668 CCCAAAATAAATGACTCAACTTTGTAT 57.072 29.630 0.00 0.00 0.00 2.29
1883 2254 4.400884 CACCATCCGTCCCAAAATAAATGA 59.599 41.667 0.00 0.00 0.00 2.57
1886 2257 3.759618 GACACCATCCGTCCCAAAATAAA 59.240 43.478 0.00 0.00 0.00 1.40
1902 2273 5.067273 CCAAACCACTACTAATTGACACCA 58.933 41.667 0.00 0.00 0.00 4.17
1907 2284 3.332485 AGCCCCAAACCACTACTAATTGA 59.668 43.478 0.00 0.00 0.00 2.57
1911 2288 1.276989 CGAGCCCCAAACCACTACTAA 59.723 52.381 0.00 0.00 0.00 2.24
2430 2807 4.142049 ACATTCTAGAGGCTGAGTAGTTGC 60.142 45.833 0.00 0.00 0.00 4.17
2432 2809 5.625656 GCAACATTCTAGAGGCTGAGTAGTT 60.626 44.000 0.00 0.00 0.00 2.24
2442 2819 5.083533 AGAACTCAGCAACATTCTAGAGG 57.916 43.478 0.00 0.00 29.63 3.69
2476 2853 8.729805 ACATGTTTTTCTTATTTTGCAAGGAA 57.270 26.923 0.00 0.00 0.00 3.36
2531 2908 3.081804 ACAAGAAAGGCGGACCAATTAG 58.918 45.455 0.00 0.00 39.06 1.73
2778 3162 6.860080 AGGCAGTTATTGAAATGAATGACAG 58.140 36.000 4.27 0.00 31.31 3.51
2821 3205 9.739276 AGTTCATGATTATTGACACTAAAGGAA 57.261 29.630 0.00 0.00 0.00 3.36
2822 3206 9.739276 AAGTTCATGATTATTGACACTAAAGGA 57.261 29.630 0.00 0.00 0.00 3.36
2877 3261 6.414987 GTGAAAGAGTTGCAAGTCAAATGTAC 59.585 38.462 30.76 18.81 36.26 2.90
2910 3296 8.743714 AGCTCTTCATAAGGGAAAATAAAACAG 58.256 33.333 0.00 0.00 0.00 3.16
2921 3308 7.931015 TTAAGGATAAGCTCTTCATAAGGGA 57.069 36.000 0.00 0.00 0.00 4.20
2940 3327 4.890158 ACTTTTGGGGCAAGAATTAAGG 57.110 40.909 0.00 0.00 0.00 2.69
2955 3342 6.820470 TTTTGCGATTTACTCCAACTTTTG 57.180 33.333 0.00 0.00 0.00 2.44
2976 3363 3.340814 TGCACAATTGTGGTGGTTTTT 57.659 38.095 33.56 0.00 45.72 1.94
2977 3364 3.340814 TTGCACAATTGTGGTGGTTTT 57.659 38.095 33.56 0.00 45.72 2.43
2978 3365 3.340814 TTTGCACAATTGTGGTGGTTT 57.659 38.095 33.56 0.00 45.72 3.27
2979 3366 3.269178 CTTTTGCACAATTGTGGTGGTT 58.731 40.909 33.56 0.00 45.72 3.67
2980 3367 2.235898 ACTTTTGCACAATTGTGGTGGT 59.764 40.909 33.56 11.64 45.72 4.16
2981 3368 2.865551 GACTTTTGCACAATTGTGGTGG 59.134 45.455 33.56 13.99 45.72 4.61
2982 3369 3.519579 TGACTTTTGCACAATTGTGGTG 58.480 40.909 33.56 14.38 45.72 4.17
2983 3370 3.883830 TGACTTTTGCACAATTGTGGT 57.116 38.095 33.56 24.02 45.72 4.16
2984 3371 4.370049 TGATGACTTTTGCACAATTGTGG 58.630 39.130 33.56 21.36 45.72 4.17
2986 3373 5.873712 TGTTTGATGACTTTTGCACAATTGT 59.126 32.000 4.92 4.92 0.00 2.71
2987 3374 6.186785 GTGTTTGATGACTTTTGCACAATTG 58.813 36.000 3.24 3.24 0.00 2.32
2988 3375 5.294060 GGTGTTTGATGACTTTTGCACAATT 59.706 36.000 0.00 0.00 0.00 2.32
2989 3376 4.810491 GGTGTTTGATGACTTTTGCACAAT 59.190 37.500 0.00 0.00 0.00 2.71
2990 3377 4.180057 GGTGTTTGATGACTTTTGCACAA 58.820 39.130 0.00 0.00 0.00 3.33
2991 3378 3.430098 GGGTGTTTGATGACTTTTGCACA 60.430 43.478 0.00 0.00 0.00 4.57
2992 3379 3.123050 GGGTGTTTGATGACTTTTGCAC 58.877 45.455 0.00 0.00 0.00 4.57
2993 3380 2.762887 TGGGTGTTTGATGACTTTTGCA 59.237 40.909 0.00 0.00 0.00 4.08
2994 3381 3.123050 GTGGGTGTTTGATGACTTTTGC 58.877 45.455 0.00 0.00 0.00 3.68
2995 3382 3.131933 TGGTGGGTGTTTGATGACTTTTG 59.868 43.478 0.00 0.00 0.00 2.44
2996 3383 3.370104 TGGTGGGTGTTTGATGACTTTT 58.630 40.909 0.00 0.00 0.00 2.27
2997 3384 3.025322 TGGTGGGTGTTTGATGACTTT 57.975 42.857 0.00 0.00 0.00 2.66
2998 3385 2.746279 TGGTGGGTGTTTGATGACTT 57.254 45.000 0.00 0.00 0.00 3.01
2999 3386 2.746279 TTGGTGGGTGTTTGATGACT 57.254 45.000 0.00 0.00 0.00 3.41
3000 3387 3.810310 TTTTGGTGGGTGTTTGATGAC 57.190 42.857 0.00 0.00 0.00 3.06
3001 3388 3.494048 GCATTTTGGTGGGTGTTTGATGA 60.494 43.478 0.00 0.00 0.00 2.92
3002 3389 2.807392 GCATTTTGGTGGGTGTTTGATG 59.193 45.455 0.00 0.00 0.00 3.07
3003 3390 2.437281 TGCATTTTGGTGGGTGTTTGAT 59.563 40.909 0.00 0.00 0.00 2.57
3004 3391 1.833630 TGCATTTTGGTGGGTGTTTGA 59.166 42.857 0.00 0.00 0.00 2.69
3005 3392 2.322355 TGCATTTTGGTGGGTGTTTG 57.678 45.000 0.00 0.00 0.00 2.93
3006 3393 2.848691 CATGCATTTTGGTGGGTGTTT 58.151 42.857 0.00 0.00 0.00 2.83
3007 3394 1.542987 GCATGCATTTTGGTGGGTGTT 60.543 47.619 14.21 0.00 0.00 3.32
3008 3395 0.035176 GCATGCATTTTGGTGGGTGT 59.965 50.000 14.21 0.00 0.00 4.16
3009 3396 0.322322 AGCATGCATTTTGGTGGGTG 59.678 50.000 21.98 0.00 0.00 4.61
3010 3397 1.058284 AAGCATGCATTTTGGTGGGT 58.942 45.000 21.98 0.00 0.00 4.51
3011 3398 2.078392 GAAAGCATGCATTTTGGTGGG 58.922 47.619 21.98 0.00 0.00 4.61
3012 3399 2.739913 CAGAAAGCATGCATTTTGGTGG 59.260 45.455 21.98 0.00 0.00 4.61
3013 3400 2.739913 CCAGAAAGCATGCATTTTGGTG 59.260 45.455 28.00 16.14 0.00 4.17
3014 3401 2.369532 ACCAGAAAGCATGCATTTTGGT 59.630 40.909 33.12 33.12 31.79 3.67
3015 3402 3.048337 ACCAGAAAGCATGCATTTTGG 57.952 42.857 32.04 32.04 0.00 3.28
3016 3403 3.187637 CCAACCAGAAAGCATGCATTTTG 59.812 43.478 21.98 18.93 0.00 2.44
3017 3404 3.181452 ACCAACCAGAAAGCATGCATTTT 60.181 39.130 21.98 12.70 0.00 1.82
3018 3405 2.369532 ACCAACCAGAAAGCATGCATTT 59.630 40.909 21.98 16.58 0.00 2.32
3019 3406 1.972795 ACCAACCAGAAAGCATGCATT 59.027 42.857 21.98 15.23 0.00 3.56
3020 3407 1.636148 ACCAACCAGAAAGCATGCAT 58.364 45.000 21.98 4.57 0.00 3.96
3021 3408 1.412079 AACCAACCAGAAAGCATGCA 58.588 45.000 21.98 0.00 0.00 3.96
3022 3409 2.531522 AAACCAACCAGAAAGCATGC 57.468 45.000 10.51 10.51 0.00 4.06
3040 3427 7.009174 GTCGAAGTTTTCAATGCTTCAGAAAAA 59.991 33.333 11.79 0.00 41.31 1.94
3041 3428 6.472163 GTCGAAGTTTTCAATGCTTCAGAAAA 59.528 34.615 0.00 8.10 38.70 2.29
3042 3429 5.971202 GTCGAAGTTTTCAATGCTTCAGAAA 59.029 36.000 0.00 0.00 38.70 2.52
3043 3430 5.505654 GGTCGAAGTTTTCAATGCTTCAGAA 60.506 40.000 0.00 0.00 38.70 3.02
3044 3431 4.024048 GGTCGAAGTTTTCAATGCTTCAGA 60.024 41.667 0.00 0.00 38.70 3.27
3045 3432 4.222114 GGTCGAAGTTTTCAATGCTTCAG 58.778 43.478 0.00 0.00 38.70 3.02
3046 3433 3.629855 TGGTCGAAGTTTTCAATGCTTCA 59.370 39.130 0.00 0.00 38.70 3.02
3047 3434 4.223320 TGGTCGAAGTTTTCAATGCTTC 57.777 40.909 0.00 0.00 36.29 3.86
3048 3435 4.647424 TTGGTCGAAGTTTTCAATGCTT 57.353 36.364 0.00 0.00 0.00 3.91
3049 3436 4.647424 TTTGGTCGAAGTTTTCAATGCT 57.353 36.364 0.00 0.00 0.00 3.79
3050 3437 5.905480 AATTTGGTCGAAGTTTTCAATGC 57.095 34.783 0.00 0.00 0.00 3.56
3051 3438 7.125113 CCAAAATTTGGTCGAAGTTTTCAATG 58.875 34.615 16.24 0.00 45.93 2.82
3052 3439 7.245419 CCAAAATTTGGTCGAAGTTTTCAAT 57.755 32.000 16.24 0.00 45.93 2.57
3053 3440 6.654793 CCAAAATTTGGTCGAAGTTTTCAA 57.345 33.333 16.24 0.00 45.93 2.69
3081 3468 8.669243 ACAAATTTTCGGAGTAAATTGCAAAAA 58.331 25.926 1.71 0.00 35.85 1.94
3082 3469 8.202745 ACAAATTTTCGGAGTAAATTGCAAAA 57.797 26.923 1.71 0.00 35.85 2.44
3083 3470 7.778470 ACAAATTTTCGGAGTAAATTGCAAA 57.222 28.000 1.71 0.00 35.85 3.68
3084 3471 7.708752 AGAACAAATTTTCGGAGTAAATTGCAA 59.291 29.630 0.00 0.00 35.85 4.08
3085 3472 7.206687 AGAACAAATTTTCGGAGTAAATTGCA 58.793 30.769 2.15 0.00 35.85 4.08
3086 3473 7.637709 AGAACAAATTTTCGGAGTAAATTGC 57.362 32.000 2.15 0.00 35.85 3.56
3090 3477 9.187455 GCAAATAGAACAAATTTTCGGAGTAAA 57.813 29.630 0.00 0.00 0.00 2.01
3091 3478 7.810759 GGCAAATAGAACAAATTTTCGGAGTAA 59.189 33.333 0.00 0.00 0.00 2.24
3092 3479 7.040340 TGGCAAATAGAACAAATTTTCGGAGTA 60.040 33.333 0.00 0.00 0.00 2.59
3093 3480 6.156519 GGCAAATAGAACAAATTTTCGGAGT 58.843 36.000 0.00 0.00 0.00 3.85
3094 3481 6.155827 TGGCAAATAGAACAAATTTTCGGAG 58.844 36.000 0.00 0.00 0.00 4.63
3095 3482 6.090483 TGGCAAATAGAACAAATTTTCGGA 57.910 33.333 0.00 0.00 0.00 4.55
3108 3495 8.786898 GCTCAACTGAATATAATGGCAAATAGA 58.213 33.333 0.00 0.00 0.00 1.98
3117 3504 9.926751 CAACAACTAGCTCAACTGAATATAATG 57.073 33.333 0.00 0.00 0.00 1.90
3196 3583 4.630069 GCAAATAATGTGACGGTGTAGAGT 59.370 41.667 0.00 0.00 0.00 3.24
3286 3673 3.819564 AAACAAGGTTCCAAAGAAGGC 57.180 42.857 0.00 0.00 30.91 4.35
3337 3724 6.710744 GTGTTATACCGAATGATCCTTGGATT 59.289 38.462 3.43 0.00 0.00 3.01
3440 4031 6.049149 ACTATACACAAAATCACGGATCTGG 58.951 40.000 6.47 0.00 0.00 3.86
3641 4238 1.991121 ACCGTAGTCAGTGGAGTCAA 58.009 50.000 0.00 0.00 0.00 3.18
3644 4241 2.963782 AGAAAACCGTAGTCAGTGGAGT 59.036 45.455 0.00 0.00 0.00 3.85
3749 4354 1.004277 TGGGTGTCACCTAATGGCTTC 59.996 52.381 21.40 2.27 38.64 3.86
3756 4361 4.534500 ACAGTCAATATGGGTGTCACCTAA 59.466 41.667 21.40 10.82 38.64 2.69
3757 4362 4.101114 ACAGTCAATATGGGTGTCACCTA 58.899 43.478 21.40 16.49 38.64 3.08
3758 4363 2.912956 ACAGTCAATATGGGTGTCACCT 59.087 45.455 21.40 5.48 38.64 4.00
3759 4364 3.055094 AGACAGTCAATATGGGTGTCACC 60.055 47.826 14.13 14.13 40.03 4.02
3760 4365 3.935203 CAGACAGTCAATATGGGTGTCAC 59.065 47.826 13.16 0.00 40.03 3.67
3762 4367 3.197766 TCCAGACAGTCAATATGGGTGTC 59.802 47.826 2.66 5.71 38.24 3.67
3764 4369 3.055167 TGTCCAGACAGTCAATATGGGTG 60.055 47.826 2.66 0.00 36.21 4.61
3765 4370 3.181329 TGTCCAGACAGTCAATATGGGT 58.819 45.455 2.66 0.00 36.21 4.51
3794 4618 3.287867 ACCTGATTTGGACATGCTAGG 57.712 47.619 0.00 0.00 0.00 3.02
3797 4621 3.159213 TCAACCTGATTTGGACATGCT 57.841 42.857 0.00 0.00 0.00 3.79
3838 4808 6.560253 GTTCACAATCAGAACAACCACTAT 57.440 37.500 0.00 0.00 43.64 2.12
3888 4862 1.203928 GTGATTCGCGACTCATGAGG 58.796 55.000 28.44 10.87 0.00 3.86
3913 4919 4.080413 TGAGGAACCATGCATGAACATAGA 60.080 41.667 28.31 4.11 0.00 1.98
4113 5119 5.427378 AGCAAAAGCAACAACAGGTTTAAT 58.573 33.333 0.00 0.00 37.72 1.40
4119 5125 2.891112 TGAAGCAAAAGCAACAACAGG 58.109 42.857 0.00 0.00 0.00 4.00
4136 5143 6.371548 GGTGCTAGAATAACACACTGATTGAA 59.628 38.462 0.00 0.00 36.00 2.69
4151 5158 3.823873 CTCTCCATAGACGGTGCTAGAAT 59.176 47.826 0.00 0.00 0.00 2.40
4190 5197 4.034975 GCCACAATGCTCTTCTAAGATGTC 59.965 45.833 0.00 0.00 33.93 3.06
4213 5220 5.068198 AGCAATGAGTTACCTATTGGCATTG 59.932 40.000 14.54 14.54 39.56 2.82
4229 5236 0.963962 ACTGCAACCCAAGCAATGAG 59.036 50.000 0.00 0.00 42.17 2.90
4257 5264 6.418819 GCGAGTGACTTGTAACTAACTAACAA 59.581 38.462 1.20 0.00 0.00 2.83
4258 5265 5.916883 GCGAGTGACTTGTAACTAACTAACA 59.083 40.000 1.20 0.00 0.00 2.41
4583 5592 4.143137 CCAAAAATATGACCAAACTTGCGC 60.143 41.667 0.00 0.00 0.00 6.09
4599 5608 8.996651 ACATAAGCTACCTATAAGCCAAAAAT 57.003 30.769 0.00 0.00 41.02 1.82
4613 5622 7.439655 CAGTTCATTTCTAGGACATAAGCTACC 59.560 40.741 0.00 0.00 0.00 3.18
4638 5647 2.524306 CCCAAAGCTACAAATGGGTCA 58.476 47.619 11.37 0.00 46.13 4.02
4785 5813 3.181520 GCAACGTTGTATCAGCTACCAAG 60.182 47.826 27.78 0.00 0.00 3.61
4832 6363 6.694611 ACCTAGTGAATATCTTTAGTCCCCT 58.305 40.000 0.00 0.00 0.00 4.79
5018 6557 1.915078 ATGCGTTTGGAGGCTAGGCT 61.915 55.000 20.36 20.36 37.54 4.58
5132 6673 5.006746 CGTCAAAGGCTATCACCAAGTAATC 59.993 44.000 0.00 0.00 0.00 1.75
5134 6675 4.020928 TCGTCAAAGGCTATCACCAAGTAA 60.021 41.667 0.00 0.00 0.00 2.24
5139 6680 3.410631 TTTCGTCAAAGGCTATCACCA 57.589 42.857 0.00 0.00 0.00 4.17
5336 6903 6.659242 GTCTTTTGAGGGGATAGATTTTGACA 59.341 38.462 0.00 0.00 0.00 3.58
5340 6907 6.218522 AGGAGTCTTTTGAGGGGATAGATTTT 59.781 38.462 0.00 0.00 0.00 1.82
5345 6912 4.033709 TGAGGAGTCTTTTGAGGGGATAG 58.966 47.826 0.00 0.00 0.00 2.08
5360 6927 6.688073 TTGAGGAGTTAAGATTTGAGGAGT 57.312 37.500 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.