Multiple sequence alignment - TraesCS1D01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G281000 chr1D 100.000 5194 0 0 1 5194 379452155 379457348 0.000000e+00 9592.0
1 TraesCS1D01G281000 chr1D 89.326 178 13 4 4198 4371 324412389 324412214 8.760000e-53 219.0
2 TraesCS1D01G281000 chr1D 97.959 49 1 0 4589 4637 115574106 115574058 9.270000e-13 86.1
3 TraesCS1D01G281000 chr1A 94.443 3455 117 34 796 4197 480546484 480549916 0.000000e+00 5247.0
4 TraesCS1D01G281000 chr1A 91.367 417 33 3 4734 5149 511219648 511219234 7.550000e-158 568.0
5 TraesCS1D01G281000 chr1A 90.574 244 19 2 4355 4594 480549915 480550158 2.330000e-83 320.0
6 TraesCS1D01G281000 chr1A 100.000 33 0 0 5146 5178 480550317 480550349 1.560000e-05 62.1
7 TraesCS1D01G281000 chr1B 90.840 1976 94 36 800 2732 508540866 508542797 0.000000e+00 2566.0
8 TraesCS1D01G281000 chr1B 96.655 867 25 4 3331 4197 508543585 508544447 0.000000e+00 1437.0
9 TraesCS1D01G281000 chr1B 92.203 590 25 8 2749 3332 508542947 508543521 0.000000e+00 815.0
10 TraesCS1D01G281000 chr1B 94.256 383 18 2 4355 4733 508544446 508544828 2.700000e-162 582.0
11 TraesCS1D01G281000 chr1B 91.071 168 11 3 4194 4358 314565535 314565701 1.880000e-54 224.0
12 TraesCS1D01G281000 chr1B 89.326 178 13 4 4198 4371 436689151 436688976 8.760000e-53 219.0
13 TraesCS1D01G281000 chr1B 96.078 51 1 1 5145 5194 508544819 508544869 1.200000e-11 82.4
14 TraesCS1D01G281000 chr7A 94.981 797 36 4 1 795 20655785 20654991 0.000000e+00 1247.0
15 TraesCS1D01G281000 chr7A 94.643 56 2 1 4591 4646 561581039 561580985 9.270000e-13 86.1
16 TraesCS1D01G281000 chr7D 94.836 794 37 4 1 792 32697831 32698622 0.000000e+00 1236.0
17 TraesCS1D01G281000 chr7D 91.990 412 30 3 4734 5145 89076138 89075730 4.510000e-160 575.0
18 TraesCS1D01G281000 chr7B 94.836 794 37 4 1 791 674964571 674965363 0.000000e+00 1236.0
19 TraesCS1D01G281000 chr2B 94.830 793 38 3 1 791 694247624 694246833 0.000000e+00 1234.0
20 TraesCS1D01G281000 chr2B 92.718 412 21 6 4734 5145 391525938 391525536 2.080000e-163 586.0
21 TraesCS1D01G281000 chr2B 91.807 415 30 3 4734 5146 785279438 785279026 4.510000e-160 575.0
22 TraesCS1D01G281000 chr2B 91.566 166 10 2 4195 4356 578597700 578597865 5.230000e-55 226.0
23 TraesCS1D01G281000 chr3B 94.584 794 39 4 1 791 744908679 744909471 0.000000e+00 1225.0
24 TraesCS1D01G281000 chr3B 94.458 794 36 6 1 791 804746747 804745959 0.000000e+00 1216.0
25 TraesCS1D01G281000 chr3B 94.081 794 43 4 6 797 631665159 631664368 0.000000e+00 1203.0
26 TraesCS1D01G281000 chr3B 90.951 431 28 10 4726 5152 521474899 521475322 2.100000e-158 569.0
27 TraesCS1D01G281000 chr6B 94.332 794 42 3 1 792 665693912 665694704 0.000000e+00 1214.0
28 TraesCS1D01G281000 chr6B 85.915 71 7 1 4593 4660 237701955 237701885 7.210000e-09 73.1
29 TraesCS1D01G281000 chr4B 93.992 799 44 4 1 797 570126233 570125437 0.000000e+00 1206.0
30 TraesCS1D01G281000 chr4D 93.947 413 23 2 4734 5146 334160740 334160330 1.590000e-174 623.0
31 TraesCS1D01G281000 chr4A 92.961 412 21 7 4734 5145 738099138 738098735 1.250000e-165 593.0
32 TraesCS1D01G281000 chr5A 92.574 404 27 2 4743 5146 600045474 600045074 1.250000e-160 577.0
33 TraesCS1D01G281000 chr5B 91.827 416 27 6 4734 5145 608557272 608556860 1.620000e-159 573.0
34 TraesCS1D01G281000 chr2A 92.593 162 10 1 4198 4357 696850717 696850878 1.120000e-56 231.0
35 TraesCS1D01G281000 chr2A 91.617 167 10 2 4194 4356 70985750 70985584 1.460000e-55 228.0
36 TraesCS1D01G281000 chr2A 94.444 54 2 1 4591 4644 159097068 159097016 1.200000e-11 82.4
37 TraesCS1D01G281000 chr3D 92.121 165 9 3 4197 4357 577155173 577155009 4.050000e-56 230.0
38 TraesCS1D01G281000 chrUn 92.025 163 10 2 4197 4356 178663685 178663523 5.230000e-55 226.0
39 TraesCS1D01G281000 chrUn 92.025 163 10 2 4197 4356 178723572 178723410 5.230000e-55 226.0
40 TraesCS1D01G281000 chrUn 98.000 50 1 0 4589 4638 42338338 42338387 2.580000e-13 87.9
41 TraesCS1D01G281000 chrUn 98.000 50 1 0 4589 4638 42530611 42530562 2.580000e-13 87.9
42 TraesCS1D01G281000 chrUn 98.000 50 1 0 4589 4638 474064264 474064215 2.580000e-13 87.9
43 TraesCS1D01G281000 chr3A 94.545 55 2 1 4591 4645 616476018 616476071 3.330000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G281000 chr1D 379452155 379457348 5193 False 9592.000000 9592 100.000000 1 5194 1 chr1D.!!$F1 5193
1 TraesCS1D01G281000 chr1A 480546484 480550349 3865 False 1876.366667 5247 95.005667 796 5178 3 chr1A.!!$F1 4382
2 TraesCS1D01G281000 chr1B 508540866 508544869 4003 False 1096.480000 2566 94.006400 800 5194 5 chr1B.!!$F2 4394
3 TraesCS1D01G281000 chr7A 20654991 20655785 794 True 1247.000000 1247 94.981000 1 795 1 chr7A.!!$R1 794
4 TraesCS1D01G281000 chr7D 32697831 32698622 791 False 1236.000000 1236 94.836000 1 792 1 chr7D.!!$F1 791
5 TraesCS1D01G281000 chr7B 674964571 674965363 792 False 1236.000000 1236 94.836000 1 791 1 chr7B.!!$F1 790
6 TraesCS1D01G281000 chr2B 694246833 694247624 791 True 1234.000000 1234 94.830000 1 791 1 chr2B.!!$R2 790
7 TraesCS1D01G281000 chr3B 744908679 744909471 792 False 1225.000000 1225 94.584000 1 791 1 chr3B.!!$F2 790
8 TraesCS1D01G281000 chr3B 804745959 804746747 788 True 1216.000000 1216 94.458000 1 791 1 chr3B.!!$R2 790
9 TraesCS1D01G281000 chr3B 631664368 631665159 791 True 1203.000000 1203 94.081000 6 797 1 chr3B.!!$R1 791
10 TraesCS1D01G281000 chr6B 665693912 665694704 792 False 1214.000000 1214 94.332000 1 792 1 chr6B.!!$F1 791
11 TraesCS1D01G281000 chr4B 570125437 570126233 796 True 1206.000000 1206 93.992000 1 797 1 chr4B.!!$R1 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 934 1.457346 CAGCCACATGAGGGTTTCTC 58.543 55.000 11.46 0.00 42.74 2.87 F
1535 1568 1.062810 AGGGAGCCCTCTAGGTAACAG 60.063 57.143 1.14 0.00 44.43 3.16 F
1767 1802 0.035458 AGTTCGAAAGGGCCTGAGTG 59.965 55.000 6.92 0.00 0.00 3.51 F
1777 1812 0.108424 GGCCTGAGTGTAGCTGTGAG 60.108 60.000 0.00 0.00 0.00 3.51 F
3419 3709 0.237498 GTCCGTGTTTTGGCTAGCAC 59.763 55.000 18.24 6.51 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1802 1.066573 ACATCACAGGCTCACAGCTAC 60.067 52.381 0.00 0.00 41.99 3.58 R
3508 3798 0.447801 CCCAGCGAAGAAATTCCACG 59.552 55.000 5.37 5.37 0.00 4.94 R
3544 3834 0.677731 ACCAAGATGATGCACCACCG 60.678 55.000 0.00 0.00 0.00 4.94 R
3720 4010 4.464008 GGGAATTGAGGATATGCAGTTCA 58.536 43.478 0.00 0.00 33.86 3.18 R
4724 5071 0.325296 AATCCGCCTCCACCACTCTA 60.325 55.000 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.833227 CCGTTCCCTGGTTGGTGA 59.167 61.111 0.00 0.00 0.00 4.02
47 48 1.780309 TCCCTGGTTGGTGATGAAGTT 59.220 47.619 0.00 0.00 0.00 2.66
266 269 1.589414 CTTCTCCCATCCTCCAGGTT 58.411 55.000 0.00 0.00 36.34 3.50
304 307 1.804748 GGAAGACGGCGAAGTTGATTT 59.195 47.619 16.62 0.00 0.00 2.17
306 309 2.163818 AGACGGCGAAGTTGATTTGA 57.836 45.000 16.62 0.00 0.00 2.69
664 668 1.623081 TTTCGTCGATCTGCCGTTGC 61.623 55.000 0.00 0.00 38.26 4.17
824 831 2.753966 CGAGAGGCGCCATGTTTGG 61.754 63.158 31.54 6.83 46.66 3.28
924 934 1.457346 CAGCCACATGAGGGTTTCTC 58.543 55.000 11.46 0.00 42.74 2.87
987 1009 1.667830 CCGAAGCAAAGCACGAGGA 60.668 57.895 9.35 0.00 34.12 3.71
1212 1243 2.025727 CGTACCGATCACGCCCTC 59.974 66.667 0.00 0.00 38.29 4.30
1379 1412 1.524986 CGCGTGCGTTTCAGATTAGTG 60.525 52.381 6.00 0.00 34.35 2.74
1417 1450 4.335594 GCTGGCTCGAGGTTACATTAATTT 59.664 41.667 15.58 0.00 0.00 1.82
1521 1554 2.365635 TACCAGCCTCCAGGGAGC 60.366 66.667 9.92 5.83 40.69 4.70
1535 1568 1.062810 AGGGAGCCCTCTAGGTAACAG 60.063 57.143 1.14 0.00 44.43 3.16
1540 1573 3.961408 GAGCCCTCTAGGTAACAGATTGA 59.039 47.826 0.00 0.00 38.26 2.57
1570 1603 9.006215 GTTAAATTAATTATCAGCGTGTTCCAC 57.994 33.333 0.01 0.00 0.00 4.02
1626 1660 1.065491 TCCAGCTCCGCATACACAATT 60.065 47.619 0.00 0.00 0.00 2.32
1628 1662 2.478370 CCAGCTCCGCATACACAATTTG 60.478 50.000 0.00 0.00 0.00 2.32
1644 1678 4.898861 ACAATTTGTCAGGTTAATGGGTGT 59.101 37.500 0.00 0.00 0.00 4.16
1673 1707 2.799126 TTGGTTTAGTGGGATGCGAT 57.201 45.000 0.00 0.00 0.00 4.58
1677 1711 2.627945 GTTTAGTGGGATGCGATGTGA 58.372 47.619 0.00 0.00 0.00 3.58
1767 1802 0.035458 AGTTCGAAAGGGCCTGAGTG 59.965 55.000 6.92 0.00 0.00 3.51
1776 1811 1.544825 GGGCCTGAGTGTAGCTGTGA 61.545 60.000 0.84 0.00 0.00 3.58
1777 1812 0.108424 GGCCTGAGTGTAGCTGTGAG 60.108 60.000 0.00 0.00 0.00 3.51
1778 1813 0.739112 GCCTGAGTGTAGCTGTGAGC 60.739 60.000 0.00 0.00 42.84 4.26
1836 1871 4.277886 TGGCCTCCCCATGGTTTA 57.722 55.556 11.73 0.00 39.18 2.01
1897 1942 3.065019 CTTTGTTAAAGCTGCGTGTGT 57.935 42.857 0.00 0.00 0.00 3.72
1905 1950 3.449322 AAGCTGCGTGTGTAAAATACG 57.551 42.857 0.00 0.00 45.33 3.06
1924 1969 9.712305 AAAATACGAACATAGAGCTTATAGCAT 57.288 29.630 1.09 0.00 45.56 3.79
1959 2004 5.175090 TGAGTCATAGAGATTGCGTACTG 57.825 43.478 0.00 0.00 0.00 2.74
1967 2012 3.109619 GAGATTGCGTACTGTAGCTGTC 58.890 50.000 0.00 0.00 0.00 3.51
2002 2047 8.846607 CACATGATGATAATATTGTGCATTTCG 58.153 33.333 0.00 0.00 0.00 3.46
2158 2205 4.077300 TCCCAGACAATGCATAGATGAC 57.923 45.455 0.00 0.00 0.00 3.06
2229 2290 6.015603 TGCATCTGTTGTTCCATGTTGAAATA 60.016 34.615 0.00 0.00 0.00 1.40
2232 2293 9.079833 CATCTGTTGTTCCATGTTGAAATATTC 57.920 33.333 0.00 0.00 0.00 1.75
2397 2458 7.218314 AGGGATTTTTCAGGAAGATAGATGT 57.782 36.000 0.00 0.00 0.00 3.06
2452 2513 5.197451 TCTACCTGCTTCCAAGTTTGAAAA 58.803 37.500 0.00 0.00 0.00 2.29
2528 2589 9.143155 TGGTCAAGTATATAGCTCATAACAAGA 57.857 33.333 0.00 0.00 0.00 3.02
2546 2607 5.766222 ACAAGAGCAATTCACAAAGATCAC 58.234 37.500 0.00 0.00 0.00 3.06
2689 2774 5.828299 TTTTTATTGGGGAAGTGCGATAG 57.172 39.130 0.00 0.00 0.00 2.08
2838 3057 9.158233 TCATAATTTTAAGTAACTTCTCACCCG 57.842 33.333 0.00 0.00 0.00 5.28
2888 3107 9.884465 GCATTGTTATGACTACATTTTATCTCC 57.116 33.333 0.00 0.00 37.87 3.71
2912 3131 5.505819 CGAGCCTACTTTTCGATCTGTGATA 60.506 44.000 0.00 0.00 36.49 2.15
2971 3190 6.560003 TGGATCACCACTACACTGATATTT 57.440 37.500 0.00 0.00 41.77 1.40
3419 3709 0.237498 GTCCGTGTTTTGGCTAGCAC 59.763 55.000 18.24 6.51 0.00 4.40
3508 3798 5.567823 GCCTCAGATACTGCTACTTATTCCC 60.568 48.000 0.00 0.00 0.00 3.97
3544 3834 0.536006 GGGTCATCATAGCTGGTGCC 60.536 60.000 0.00 0.00 40.80 5.01
3710 4000 0.532862 CTGTGTTGCTTCAGGTCGGT 60.533 55.000 0.00 0.00 0.00 4.69
3717 4007 1.544691 TGCTTCAGGTCGGTTACTCTC 59.455 52.381 0.00 0.00 0.00 3.20
3720 4010 1.901591 TCAGGTCGGTTACTCTCGTT 58.098 50.000 0.00 0.00 0.00 3.85
3742 4032 4.464008 TGAACTGCATATCCTCAATTCCC 58.536 43.478 0.00 0.00 0.00 3.97
3837 4128 4.142249 GGGACAAGCTGTTTAACACACTTT 60.142 41.667 6.04 0.72 29.44 2.66
3839 4130 5.288472 GGACAAGCTGTTTAACACACTTTTG 59.712 40.000 6.04 4.27 29.44 2.44
4060 4351 3.497262 AGTGCGAAGTTACTAAGTTTGCC 59.503 43.478 19.63 13.47 46.26 4.52
4098 4389 1.282875 GAACTTTCTGCCACCGTGC 59.717 57.895 0.00 0.00 0.00 5.34
4162 4453 6.641169 TTGTTTGTACAATCCATTGCTGTA 57.359 33.333 9.56 0.00 39.29 2.74
4197 4488 8.844244 GTTTTCTCATGTTTCTATCCAGCATAT 58.156 33.333 0.00 0.00 0.00 1.78
4199 4490 9.494271 TTTCTCATGTTTCTATCCAGCATATAC 57.506 33.333 0.00 0.00 0.00 1.47
4200 4491 8.427902 TCTCATGTTTCTATCCAGCATATACT 57.572 34.615 0.00 0.00 0.00 2.12
4201 4492 8.526978 TCTCATGTTTCTATCCAGCATATACTC 58.473 37.037 0.00 0.00 0.00 2.59
4202 4493 7.615403 TCATGTTTCTATCCAGCATATACTCC 58.385 38.462 0.00 0.00 0.00 3.85
4203 4494 6.360370 TGTTTCTATCCAGCATATACTCCC 57.640 41.667 0.00 0.00 0.00 4.30
4204 4495 6.084738 TGTTTCTATCCAGCATATACTCCCT 58.915 40.000 0.00 0.00 0.00 4.20
4205 4496 6.211584 TGTTTCTATCCAGCATATACTCCCTC 59.788 42.308 0.00 0.00 0.00 4.30
4206 4497 4.873010 TCTATCCAGCATATACTCCCTCC 58.127 47.826 0.00 0.00 0.00 4.30
4207 4498 1.924731 TCCAGCATATACTCCCTCCG 58.075 55.000 0.00 0.00 0.00 4.63
4208 4499 1.147191 TCCAGCATATACTCCCTCCGT 59.853 52.381 0.00 0.00 0.00 4.69
4209 4500 1.971357 CCAGCATATACTCCCTCCGTT 59.029 52.381 0.00 0.00 0.00 4.44
4210 4501 2.028930 CCAGCATATACTCCCTCCGTTC 60.029 54.545 0.00 0.00 0.00 3.95
4211 4502 2.028930 CAGCATATACTCCCTCCGTTCC 60.029 54.545 0.00 0.00 0.00 3.62
4212 4503 2.158295 AGCATATACTCCCTCCGTTCCT 60.158 50.000 0.00 0.00 0.00 3.36
4213 4504 3.075582 AGCATATACTCCCTCCGTTCCTA 59.924 47.826 0.00 0.00 0.00 2.94
4214 4505 3.830755 GCATATACTCCCTCCGTTCCTAA 59.169 47.826 0.00 0.00 0.00 2.69
4215 4506 4.282703 GCATATACTCCCTCCGTTCCTAAA 59.717 45.833 0.00 0.00 0.00 1.85
4216 4507 5.046520 GCATATACTCCCTCCGTTCCTAAAT 60.047 44.000 0.00 0.00 0.00 1.40
4217 4508 6.154021 GCATATACTCCCTCCGTTCCTAAATA 59.846 42.308 0.00 0.00 0.00 1.40
4218 4509 7.147707 GCATATACTCCCTCCGTTCCTAAATAT 60.148 40.741 0.00 0.00 0.00 1.28
4219 4510 9.417561 CATATACTCCCTCCGTTCCTAAATATA 57.582 37.037 0.00 0.00 0.00 0.86
4221 4512 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4222 4513 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4223 4514 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4224 4515 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4225 4516 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4226 4517 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4227 4518 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4228 4519 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
4229 4520 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
4230 4521 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
4231 4522 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
4232 4523 9.765795 CGTTCCTAAATATAAGTCTTTGGAGAT 57.234 33.333 0.00 0.00 33.70 2.75
4252 4543 9.832445 TGGAGATTCCAATAAAAGACTACATAC 57.168 33.333 0.00 0.00 45.00 2.39
4253 4544 8.979574 GGAGATTCCAATAAAAGACTACATACG 58.020 37.037 0.00 0.00 36.28 3.06
4254 4545 8.888579 AGATTCCAATAAAAGACTACATACGG 57.111 34.615 0.00 0.00 0.00 4.02
4255 4546 8.701895 AGATTCCAATAAAAGACTACATACGGA 58.298 33.333 0.00 0.00 0.00 4.69
4256 4547 8.888579 ATTCCAATAAAAGACTACATACGGAG 57.111 34.615 0.00 0.00 0.00 4.63
4257 4548 6.278363 TCCAATAAAAGACTACATACGGAGC 58.722 40.000 0.00 0.00 0.00 4.70
4258 4549 6.046593 CCAATAAAAGACTACATACGGAGCA 58.953 40.000 0.00 0.00 0.00 4.26
4259 4550 6.537301 CCAATAAAAGACTACATACGGAGCAA 59.463 38.462 0.00 0.00 0.00 3.91
4260 4551 7.065324 CCAATAAAAGACTACATACGGAGCAAA 59.935 37.037 0.00 0.00 0.00 3.68
4261 4552 8.447833 CAATAAAAGACTACATACGGAGCAAAA 58.552 33.333 0.00 0.00 0.00 2.44
4262 4553 8.732746 ATAAAAGACTACATACGGAGCAAAAT 57.267 30.769 0.00 0.00 0.00 1.82
4263 4554 6.422776 AAAGACTACATACGGAGCAAAATG 57.577 37.500 0.00 0.00 0.00 2.32
4264 4555 5.339008 AGACTACATACGGAGCAAAATGA 57.661 39.130 0.00 0.00 0.00 2.57
4265 4556 5.352284 AGACTACATACGGAGCAAAATGAG 58.648 41.667 0.00 0.00 0.00 2.90
4266 4557 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4267 4558 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4268 4559 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4269 4560 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4270 4561 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4271 4562 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4272 4563 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4273 4564 3.438087 ACGGAGCAAAATGAGTGAATCTG 59.562 43.478 0.00 0.00 0.00 2.90
4274 4565 3.730061 CGGAGCAAAATGAGTGAATCTGC 60.730 47.826 0.00 0.00 0.00 4.26
4275 4566 3.192001 GGAGCAAAATGAGTGAATCTGCA 59.808 43.478 0.00 0.00 0.00 4.41
4276 4567 4.164294 GAGCAAAATGAGTGAATCTGCAC 58.836 43.478 0.00 0.00 39.05 4.57
4288 4579 6.940739 AGTGAATCTGCACTCTAAAGTATGT 58.059 36.000 0.00 0.00 45.54 2.29
4289 4580 7.038659 AGTGAATCTGCACTCTAAAGTATGTC 58.961 38.462 0.00 0.00 45.54 3.06
4290 4581 7.038659 GTGAATCTGCACTCTAAAGTATGTCT 58.961 38.462 0.00 0.00 35.91 3.41
4291 4582 8.191446 GTGAATCTGCACTCTAAAGTATGTCTA 58.809 37.037 0.00 0.00 35.91 2.59
4292 4583 8.918116 TGAATCTGCACTCTAAAGTATGTCTAT 58.082 33.333 0.00 0.00 33.25 1.98
4320 4611 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
4321 4612 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
4322 4613 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
4323 4614 9.832445 ATCCGTATGTAGTTTGTATTGAAATCT 57.168 29.630 0.00 0.00 0.00 2.40
4324 4615 9.661563 TCCGTATGTAGTTTGTATTGAAATCTT 57.338 29.630 0.00 0.00 0.00 2.40
4352 4643 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
4353 4644 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
4354 4645 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
4355 4646 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
4394 4688 3.670625 AGGTATGTTTGCGTACACATGT 58.329 40.909 14.51 0.00 38.51 3.21
4440 4734 7.269937 CGAACTGAACAAATCATGAATGACTTC 59.730 37.037 16.28 11.43 40.03 3.01
4503 4798 9.202273 GTCAGTTAGTCATATGATTCTGGAATC 57.798 37.037 9.02 14.33 45.55 2.52
4539 4834 1.181786 TCGGTTCAAATCATTGGGCC 58.818 50.000 0.00 0.00 37.15 5.80
4601 4896 6.127140 TGCCAGAAGTTTAATAGTACTCCCTC 60.127 42.308 0.00 0.00 0.00 4.30
4644 4939 5.728344 GCTGCTTTTGTACAACTTTCGTACA 60.728 40.000 8.07 0.00 45.62 2.90
4724 5071 2.739609 GCTTCAAACCAAACAAGCAGCT 60.740 45.455 0.00 0.00 40.86 4.24
4725 5072 3.490761 GCTTCAAACCAAACAAGCAGCTA 60.491 43.478 0.00 0.00 40.86 3.32
4726 5073 3.988379 TCAAACCAAACAAGCAGCTAG 57.012 42.857 0.00 0.00 0.00 3.42
4727 5074 3.550820 TCAAACCAAACAAGCAGCTAGA 58.449 40.909 0.00 0.00 0.00 2.43
4728 5075 3.565482 TCAAACCAAACAAGCAGCTAGAG 59.435 43.478 0.00 0.00 0.00 2.43
4729 5076 2.938956 ACCAAACAAGCAGCTAGAGT 57.061 45.000 0.00 0.00 0.00 3.24
4730 5077 2.498167 ACCAAACAAGCAGCTAGAGTG 58.502 47.619 0.00 0.00 0.00 3.51
4731 5078 1.808945 CCAAACAAGCAGCTAGAGTGG 59.191 52.381 0.00 0.00 0.00 4.00
4732 5079 2.498167 CAAACAAGCAGCTAGAGTGGT 58.502 47.619 0.00 0.00 0.00 4.16
4733 5080 2.175878 AACAAGCAGCTAGAGTGGTG 57.824 50.000 0.00 0.00 38.35 4.17
4734 5081 0.322975 ACAAGCAGCTAGAGTGGTGG 59.677 55.000 0.00 0.00 36.12 4.61
4735 5082 0.610174 CAAGCAGCTAGAGTGGTGGA 59.390 55.000 0.00 0.00 36.12 4.02
4736 5083 0.901124 AAGCAGCTAGAGTGGTGGAG 59.099 55.000 0.00 0.00 36.12 3.86
4737 5084 0.975040 AGCAGCTAGAGTGGTGGAGG 60.975 60.000 0.00 0.00 36.12 4.30
4738 5085 1.519719 CAGCTAGAGTGGTGGAGGC 59.480 63.158 0.00 0.00 0.00 4.70
4739 5086 2.055042 AGCTAGAGTGGTGGAGGCG 61.055 63.158 0.00 0.00 0.00 5.52
4740 5087 3.082579 GCTAGAGTGGTGGAGGCGG 62.083 68.421 0.00 0.00 0.00 6.13
4741 5088 1.379977 CTAGAGTGGTGGAGGCGGA 60.380 63.158 0.00 0.00 0.00 5.54
4742 5089 0.757188 CTAGAGTGGTGGAGGCGGAT 60.757 60.000 0.00 0.00 0.00 4.18
4743 5090 0.325296 TAGAGTGGTGGAGGCGGATT 60.325 55.000 0.00 0.00 0.00 3.01
4744 5091 1.201429 AGAGTGGTGGAGGCGGATTT 61.201 55.000 0.00 0.00 0.00 2.17
4745 5092 1.002134 AGTGGTGGAGGCGGATTTG 60.002 57.895 0.00 0.00 0.00 2.32
4746 5093 1.303317 GTGGTGGAGGCGGATTTGT 60.303 57.895 0.00 0.00 0.00 2.83
4747 5094 1.303236 TGGTGGAGGCGGATTTGTG 60.303 57.895 0.00 0.00 0.00 3.33
4748 5095 2.046285 GGTGGAGGCGGATTTGTGG 61.046 63.158 0.00 0.00 0.00 4.17
4749 5096 1.303317 GTGGAGGCGGATTTGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
4750 5097 1.002624 TGGAGGCGGATTTGTGGTC 60.003 57.895 0.00 0.00 0.00 4.02
4751 5098 1.299976 GGAGGCGGATTTGTGGTCT 59.700 57.895 0.00 0.00 0.00 3.85
4752 5099 0.539986 GGAGGCGGATTTGTGGTCTA 59.460 55.000 0.00 0.00 0.00 2.59
4753 5100 1.141053 GGAGGCGGATTTGTGGTCTAT 59.859 52.381 0.00 0.00 0.00 1.98
4754 5101 2.213499 GAGGCGGATTTGTGGTCTATG 58.787 52.381 0.00 0.00 0.00 2.23
4755 5102 1.134098 AGGCGGATTTGTGGTCTATGG 60.134 52.381 0.00 0.00 0.00 2.74
4756 5103 1.308998 GCGGATTTGTGGTCTATGGG 58.691 55.000 0.00 0.00 0.00 4.00
4757 5104 1.967319 CGGATTTGTGGTCTATGGGG 58.033 55.000 0.00 0.00 0.00 4.96
4758 5105 1.488812 CGGATTTGTGGTCTATGGGGA 59.511 52.381 0.00 0.00 0.00 4.81
4759 5106 2.745152 CGGATTTGTGGTCTATGGGGAC 60.745 54.545 0.00 0.00 35.66 4.46
4776 5123 5.280499 TGGGGACATCTACATCCTATATGG 58.720 45.833 0.00 0.00 35.15 2.74
4777 5124 4.656112 GGGGACATCTACATCCTATATGGG 59.344 50.000 0.00 0.00 35.15 4.00
4778 5125 5.529289 GGGACATCTACATCCTATATGGGA 58.471 45.833 10.63 10.63 39.95 4.37
4779 5126 6.146760 GGGACATCTACATCCTATATGGGAT 58.853 44.000 14.59 14.59 46.02 3.85
4780 5127 6.617371 GGGACATCTACATCCTATATGGGATT 59.383 42.308 17.49 11.62 42.89 3.01
4781 5128 7.127955 GGGACATCTACATCCTATATGGGATTT 59.872 40.741 17.49 14.09 42.89 2.17
4782 5129 8.207545 GGACATCTACATCCTATATGGGATTTC 58.792 40.741 17.49 6.19 42.89 2.17
4783 5130 8.923838 ACATCTACATCCTATATGGGATTTCT 57.076 34.615 17.49 6.44 42.89 2.52
4784 5131 9.343994 ACATCTACATCCTATATGGGATTTCTT 57.656 33.333 17.49 5.85 42.89 2.52
4818 5165 8.839310 TTCAACAAAAAGTCAAAAATTCCTGA 57.161 26.923 0.00 0.00 0.00 3.86
4819 5166 8.839310 TCAACAAAAAGTCAAAAATTCCTGAA 57.161 26.923 0.00 0.00 0.00 3.02
4820 5167 9.277783 TCAACAAAAAGTCAAAAATTCCTGAAA 57.722 25.926 0.00 0.00 0.00 2.69
4821 5168 9.890352 CAACAAAAAGTCAAAAATTCCTGAAAA 57.110 25.926 0.00 0.00 0.00 2.29
4857 5204 8.928270 ATAAACTTGACCTTCTATTGTACTCG 57.072 34.615 0.00 0.00 0.00 4.18
4858 5205 5.979288 ACTTGACCTTCTATTGTACTCGT 57.021 39.130 0.00 0.00 0.00 4.18
4859 5206 5.710984 ACTTGACCTTCTATTGTACTCGTG 58.289 41.667 0.00 0.00 0.00 4.35
4860 5207 5.475909 ACTTGACCTTCTATTGTACTCGTGA 59.524 40.000 0.00 0.00 0.00 4.35
4861 5208 5.562506 TGACCTTCTATTGTACTCGTGAG 57.437 43.478 0.00 0.00 0.00 3.51
4862 5209 5.250982 TGACCTTCTATTGTACTCGTGAGA 58.749 41.667 3.44 0.00 39.12 3.27
4863 5210 5.708697 TGACCTTCTATTGTACTCGTGAGAA 59.291 40.000 3.44 0.00 41.32 2.87
4864 5211 6.208007 TGACCTTCTATTGTACTCGTGAGAAA 59.792 38.462 3.44 0.00 41.32 2.52
4865 5212 6.989659 ACCTTCTATTGTACTCGTGAGAAAA 58.010 36.000 3.44 0.00 41.32 2.29
4866 5213 7.439381 ACCTTCTATTGTACTCGTGAGAAAAA 58.561 34.615 3.44 0.00 41.32 1.94
4889 5236 7.624360 AAAAACCACAAAAAGAAAATCTCCC 57.376 32.000 0.00 0.00 0.00 4.30
4890 5237 6.560003 AAACCACAAAAAGAAAATCTCCCT 57.440 33.333 0.00 0.00 0.00 4.20
4891 5238 6.560003 AACCACAAAAAGAAAATCTCCCTT 57.440 33.333 0.00 0.00 0.00 3.95
4892 5239 6.560003 ACCACAAAAAGAAAATCTCCCTTT 57.440 33.333 0.00 0.00 0.00 3.11
4893 5240 6.348498 ACCACAAAAAGAAAATCTCCCTTTG 58.652 36.000 0.00 0.00 31.91 2.77
4894 5241 6.156083 ACCACAAAAAGAAAATCTCCCTTTGA 59.844 34.615 12.59 0.00 31.00 2.69
4895 5242 6.479990 CCACAAAAAGAAAATCTCCCTTTGAC 59.520 38.462 12.59 0.00 31.00 3.18
4896 5243 7.267857 CACAAAAAGAAAATCTCCCTTTGACT 58.732 34.615 12.59 0.00 31.00 3.41
4897 5244 7.765819 CACAAAAAGAAAATCTCCCTTTGACTT 59.234 33.333 12.59 0.00 31.00 3.01
4898 5245 7.981789 ACAAAAAGAAAATCTCCCTTTGACTTC 59.018 33.333 12.59 0.00 31.00 3.01
4899 5246 7.904558 AAAAGAAAATCTCCCTTTGACTTCT 57.095 32.000 0.00 0.00 31.30 2.85
4900 5247 7.904558 AAAGAAAATCTCCCTTTGACTTCTT 57.095 32.000 0.00 0.00 33.80 2.52
4901 5248 7.904558 AAGAAAATCTCCCTTTGACTTCTTT 57.095 32.000 0.00 0.00 30.94 2.52
4902 5249 7.904558 AGAAAATCTCCCTTTGACTTCTTTT 57.095 32.000 0.00 0.00 0.00 2.27
4903 5250 7.946207 AGAAAATCTCCCTTTGACTTCTTTTC 58.054 34.615 0.00 0.00 32.82 2.29
4904 5251 7.561356 AGAAAATCTCCCTTTGACTTCTTTTCA 59.439 33.333 0.00 0.00 34.28 2.69
4905 5252 7.660030 AAATCTCCCTTTGACTTCTTTTCAA 57.340 32.000 0.00 0.00 0.00 2.69
4906 5253 7.660030 AATCTCCCTTTGACTTCTTTTCAAA 57.340 32.000 0.00 0.00 39.99 2.69
4907 5254 7.660030 ATCTCCCTTTGACTTCTTTTCAAAA 57.340 32.000 0.00 0.00 41.32 2.44
4908 5255 7.475137 TCTCCCTTTGACTTCTTTTCAAAAA 57.525 32.000 0.00 0.00 41.32 1.94
4945 5292 5.975442 GCTAAAATAGCGTGAATAGTGACC 58.025 41.667 0.00 0.00 42.62 4.02
4946 5293 5.753921 GCTAAAATAGCGTGAATAGTGACCT 59.246 40.000 0.00 0.00 42.62 3.85
4947 5294 6.921857 GCTAAAATAGCGTGAATAGTGACCTA 59.078 38.462 0.00 0.00 42.62 3.08
4948 5295 7.599245 GCTAAAATAGCGTGAATAGTGACCTAT 59.401 37.037 0.00 0.00 42.62 2.57
4951 5298 9.998106 AAAATAGCGTGAATAGTGACCTATAAT 57.002 29.630 0.00 0.00 32.57 1.28
4954 5301 6.622549 AGCGTGAATAGTGACCTATAATAGC 58.377 40.000 0.00 0.00 32.57 2.97
4955 5302 6.208797 AGCGTGAATAGTGACCTATAATAGCA 59.791 38.462 0.00 0.00 32.57 3.49
4956 5303 6.866770 GCGTGAATAGTGACCTATAATAGCAA 59.133 38.462 0.00 0.00 32.57 3.91
4957 5304 7.384115 GCGTGAATAGTGACCTATAATAGCAAA 59.616 37.037 0.00 0.00 32.57 3.68
4958 5305 9.424319 CGTGAATAGTGACCTATAATAGCAAAT 57.576 33.333 0.00 0.00 32.57 2.32
4990 5337 3.608316 TTTTTGCTGCAAGGTCAACTT 57.392 38.095 15.39 0.00 41.00 2.66
4991 5338 3.608316 TTTTGCTGCAAGGTCAACTTT 57.392 38.095 15.39 0.00 37.29 2.66
4992 5339 3.608316 TTTGCTGCAAGGTCAACTTTT 57.392 38.095 15.39 0.00 37.29 2.27
4993 5340 2.582728 TGCTGCAAGGTCAACTTTTG 57.417 45.000 0.00 0.00 37.29 2.44
4994 5341 1.824230 TGCTGCAAGGTCAACTTTTGT 59.176 42.857 0.00 0.00 37.29 2.83
4995 5342 2.233431 TGCTGCAAGGTCAACTTTTGTT 59.767 40.909 0.00 0.00 44.66 2.83
4996 5343 3.261580 GCTGCAAGGTCAACTTTTGTTT 58.738 40.909 0.00 0.00 41.35 2.83
4997 5344 3.684305 GCTGCAAGGTCAACTTTTGTTTT 59.316 39.130 0.00 0.00 41.35 2.43
4998 5345 4.154015 GCTGCAAGGTCAACTTTTGTTTTT 59.846 37.500 0.00 0.00 41.35 1.94
5041 5388 6.604735 ACTAGTGCAAAAGTAAGTCAAGTG 57.395 37.500 0.00 0.00 0.00 3.16
5042 5389 6.113411 ACTAGTGCAAAAGTAAGTCAAGTGT 58.887 36.000 0.00 0.00 0.00 3.55
5043 5390 5.897377 AGTGCAAAAGTAAGTCAAGTGTT 57.103 34.783 0.00 0.00 0.00 3.32
5044 5391 6.267496 AGTGCAAAAGTAAGTCAAGTGTTT 57.733 33.333 0.00 0.00 0.00 2.83
5045 5392 6.687604 AGTGCAAAAGTAAGTCAAGTGTTTT 58.312 32.000 0.00 0.00 0.00 2.43
5046 5393 6.586082 AGTGCAAAAGTAAGTCAAGTGTTTTG 59.414 34.615 0.00 0.00 37.74 2.44
5047 5394 6.364976 GTGCAAAAGTAAGTCAAGTGTTTTGT 59.635 34.615 0.00 0.00 37.26 2.83
5048 5395 6.584563 TGCAAAAGTAAGTCAAGTGTTTTGTC 59.415 34.615 0.00 0.00 37.26 3.18
5049 5396 6.584563 GCAAAAGTAAGTCAAGTGTTTTGTCA 59.415 34.615 0.00 0.00 37.26 3.58
5050 5397 7.115663 GCAAAAGTAAGTCAAGTGTTTTGTCAA 59.884 33.333 0.00 0.00 37.26 3.18
5051 5398 8.973378 CAAAAGTAAGTCAAGTGTTTTGTCAAA 58.027 29.630 0.00 0.00 32.65 2.69
5052 5399 9.535878 AAAAGTAAGTCAAGTGTTTTGTCAAAA 57.464 25.926 6.65 6.65 0.00 2.44
5053 5400 9.705290 AAAGTAAGTCAAGTGTTTTGTCAAAAT 57.295 25.926 13.65 0.00 32.22 1.82
5056 5403 9.783256 GTAAGTCAAGTGTTTTGTCAAAATAGT 57.217 29.630 13.65 11.04 32.22 2.12
5058 5405 8.911247 AGTCAAGTGTTTTGTCAAAATAGTTC 57.089 30.769 19.36 12.43 34.29 3.01
5059 5406 8.739972 AGTCAAGTGTTTTGTCAAAATAGTTCT 58.260 29.630 19.36 13.92 34.29 3.01
5060 5407 9.353999 GTCAAGTGTTTTGTCAAAATAGTTCTT 57.646 29.630 19.36 11.77 34.29 2.52
5063 5410 9.797556 AAGTGTTTTGTCAAAATAGTTCTTACC 57.202 29.630 17.46 2.76 31.98 2.85
5064 5411 9.185680 AGTGTTTTGTCAAAATAGTTCTTACCT 57.814 29.630 13.65 0.34 32.22 3.08
5132 5479 5.736813 GGTGTATATACAACCAGGAACACA 58.263 41.667 18.58 0.00 37.94 3.72
5133 5480 6.174760 GGTGTATATACAACCAGGAACACAA 58.825 40.000 18.58 0.00 37.94 3.33
5134 5481 6.315393 GGTGTATATACAACCAGGAACACAAG 59.685 42.308 18.58 0.00 37.94 3.16
5135 5482 6.877322 GTGTATATACAACCAGGAACACAAGT 59.123 38.462 17.07 0.00 38.04 3.16
5136 5483 6.876789 TGTATATACAACCAGGAACACAAGTG 59.123 38.462 13.24 0.00 32.40 3.16
5137 5484 7.473653 TGTATATACAACCAGGAACACAAGTGT 60.474 37.037 13.24 0.00 38.20 3.55
5138 5485 3.637911 ACAACCAGGAACACAAGTGTA 57.362 42.857 6.24 0.00 44.13 2.90
5139 5486 4.164843 ACAACCAGGAACACAAGTGTAT 57.835 40.909 6.24 0.00 44.13 2.29
5140 5487 4.532834 ACAACCAGGAACACAAGTGTATT 58.467 39.130 6.24 0.00 44.13 1.89
5141 5488 4.953579 ACAACCAGGAACACAAGTGTATTT 59.046 37.500 6.24 0.00 44.13 1.40
5142 5489 5.067283 ACAACCAGGAACACAAGTGTATTTC 59.933 40.000 6.24 0.83 44.13 2.17
5143 5490 4.142038 ACCAGGAACACAAGTGTATTTCC 58.858 43.478 12.48 12.48 44.13 3.13
5144 5491 3.506067 CCAGGAACACAAGTGTATTTCCC 59.494 47.826 15.43 8.77 44.13 3.97
5181 5528 6.516527 GCATTTTTCACCAGGATTTGTACTCA 60.517 38.462 0.00 0.00 0.00 3.41
5182 5529 6.385649 TTTTTCACCAGGATTTGTACTCAC 57.614 37.500 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.036164 TCATCACCAACCAGGGAACG 59.964 55.000 0.00 0.00 43.89 3.95
40 41 1.237285 GCAGACCACCGCAACTTCAT 61.237 55.000 0.00 0.00 0.00 2.57
266 269 0.599558 CCTAAGGTCACCGACACGAA 59.400 55.000 0.00 0.00 33.68 3.85
304 307 2.031919 GTGCCACCACGGTCATCA 59.968 61.111 0.00 0.00 36.97 3.07
306 309 1.675310 CATGTGCCACCACGGTCAT 60.675 57.895 0.00 0.00 45.04 3.06
387 390 0.179062 CCGCCAGAGATTTCTCCCAG 60.179 60.000 3.97 0.00 43.88 4.45
518 522 4.451150 CGCTGCTGCCCGGACTAA 62.451 66.667 0.73 0.00 35.36 2.24
664 668 4.861102 AAGGAAGAGAAACAAATGCCAG 57.139 40.909 0.00 0.00 0.00 4.85
810 817 1.112315 TGAAACCAAACATGGCGCCT 61.112 50.000 29.70 10.60 0.00 5.52
824 831 4.955811 AAAAAGATCCTGGGGTTGAAAC 57.044 40.909 0.00 0.00 0.00 2.78
903 913 0.967380 GAAACCCTCATGTGGCTGGG 60.967 60.000 8.36 8.28 44.89 4.45
987 1009 3.868951 GAAGTCGTCGTCGCACGGT 62.869 63.158 14.25 3.55 42.81 4.83
1222 1253 0.108615 AGACGAGATGCAGGAAACGG 60.109 55.000 0.00 0.00 0.00 4.44
1335 1366 3.751246 CACGTACCTTCGGCGGGA 61.751 66.667 7.21 0.00 34.94 5.14
1491 1524 1.957765 GCTGGTACCCTCCTCCGTTC 61.958 65.000 10.07 0.00 0.00 3.95
1521 1554 4.100189 CAGGTCAATCTGTTACCTAGAGGG 59.900 50.000 0.00 0.00 41.75 4.30
1540 1573 8.276252 ACACGCTGATAATTAATTTAACAGGT 57.724 30.769 20.06 15.74 39.72 4.00
1570 1603 4.323417 TGCAGACAAACTATTACTGTGGG 58.677 43.478 0.00 0.00 0.00 4.61
1626 1660 2.443632 TCCACACCCATTAACCTGACAA 59.556 45.455 0.00 0.00 0.00 3.18
1628 1662 2.871096 TCCACACCCATTAACCTGAC 57.129 50.000 0.00 0.00 0.00 3.51
1644 1678 7.232534 GCATCCCACTAAACCAAAATATATCCA 59.767 37.037 0.00 0.00 0.00 3.41
1702 1737 7.296628 TGGGCCATTGGAATGTAATAAATAC 57.703 36.000 0.00 0.00 34.60 1.89
1703 1738 7.566879 ACTTGGGCCATTGGAATGTAATAAATA 59.433 33.333 7.26 0.00 34.60 1.40
1704 1739 6.386635 ACTTGGGCCATTGGAATGTAATAAAT 59.613 34.615 7.26 0.00 34.60 1.40
1705 1740 5.723887 ACTTGGGCCATTGGAATGTAATAAA 59.276 36.000 7.26 0.00 34.60 1.40
1706 1741 5.128499 CACTTGGGCCATTGGAATGTAATAA 59.872 40.000 7.26 0.00 34.60 1.40
1707 1742 4.648762 CACTTGGGCCATTGGAATGTAATA 59.351 41.667 7.26 0.00 34.60 0.98
1708 1743 3.451902 CACTTGGGCCATTGGAATGTAAT 59.548 43.478 7.26 0.00 34.60 1.89
1767 1802 1.066573 ACATCACAGGCTCACAGCTAC 60.067 52.381 0.00 0.00 41.99 3.58
1776 1811 1.696336 ACACAAGAGACATCACAGGCT 59.304 47.619 0.00 0.00 0.00 4.58
1777 1812 1.802960 CACACAAGAGACATCACAGGC 59.197 52.381 0.00 0.00 0.00 4.85
1778 1813 3.006217 TCTCACACAAGAGACATCACAGG 59.994 47.826 0.00 0.00 39.62 4.00
1905 1950 8.087750 ACAGAAGATGCTATAAGCTCTATGTTC 58.912 37.037 0.03 0.99 42.97 3.18
1924 1969 6.041423 TCTATGACTCATGCAAACAGAAGA 57.959 37.500 1.42 0.00 0.00 2.87
1959 2004 1.134367 TGTGCTCCATACGACAGCTAC 59.866 52.381 0.00 0.00 34.03 3.58
1967 2012 8.333186 CAATATTATCATCATGTGCTCCATACG 58.667 37.037 0.00 0.00 30.71 3.06
2002 2047 3.181520 CGTAGGCAAACAATAGCAGTCAC 60.182 47.826 0.00 0.00 0.00 3.67
2183 2230 7.028926 TGCAAAAGAAACATCATGCAATTTT 57.971 28.000 0.00 0.00 40.47 1.82
2229 2290 5.420104 CCACCTGCAAAGAGGATAAAAGAAT 59.580 40.000 0.00 0.00 36.51 2.40
2232 2293 4.335416 TCCACCTGCAAAGAGGATAAAAG 58.665 43.478 0.00 0.00 36.51 2.27
2238 2299 1.280133 CATCTCCACCTGCAAAGAGGA 59.720 52.381 0.00 0.00 36.51 3.71
2397 2458 7.282224 GGCAATACACTTACATGTCAGGATTAA 59.718 37.037 11.61 0.00 33.85 1.40
2452 2513 9.654663 GACTATGTGGTACTTAGAACTCAAAAT 57.345 33.333 8.35 0.00 32.21 1.82
2474 2535 7.847096 TGCCTCAAATCATTTACTACAGACTA 58.153 34.615 0.00 0.00 0.00 2.59
2475 2536 6.711277 TGCCTCAAATCATTTACTACAGACT 58.289 36.000 0.00 0.00 0.00 3.24
2528 2589 6.000219 AGTGTAGTGATCTTTGTGAATTGCT 59.000 36.000 0.00 0.00 0.00 3.91
2546 2607 8.759641 GCAACTTATGATATCACTTGAGTGTAG 58.240 37.037 7.78 1.94 45.76 2.74
2825 3044 1.877443 GCAAAAGCGGGTGAGAAGTTA 59.123 47.619 0.00 0.00 0.00 2.24
2838 3057 6.562825 GCAATAAGAAACTCAAGTGCAAAAGC 60.563 38.462 0.00 0.00 0.00 3.51
2888 3107 2.854777 CACAGATCGAAAAGTAGGCTCG 59.145 50.000 0.00 0.00 0.00 5.03
3419 3709 4.952335 ACCCTTTGCATGAAAGAATAGAGG 59.048 41.667 15.13 6.06 43.50 3.69
3508 3798 0.447801 CCCAGCGAAGAAATTCCACG 59.552 55.000 5.37 5.37 0.00 4.94
3544 3834 0.677731 ACCAAGATGATGCACCACCG 60.678 55.000 0.00 0.00 0.00 4.94
3717 4007 5.490139 AATTGAGGATATGCAGTTCAACG 57.510 39.130 0.00 0.00 31.34 4.10
3720 4010 4.464008 GGGAATTGAGGATATGCAGTTCA 58.536 43.478 0.00 0.00 33.86 3.18
3742 4032 6.136155 AGGGTGTAATGGAATATTTGGAAGG 58.864 40.000 0.00 0.00 0.00 3.46
3837 4128 4.202111 GCTCACCTGCTAAAAGGAAAACAA 60.202 41.667 0.00 0.00 40.02 2.83
3839 4130 3.570125 AGCTCACCTGCTAAAAGGAAAAC 59.430 43.478 0.00 0.00 42.10 2.43
4060 4351 5.047802 AGTTCACCAGGTGCAAATTTAGATG 60.048 40.000 15.64 0.00 32.98 2.90
4098 4389 2.222445 GCTAACCACCGTTGTTGTACAG 59.778 50.000 0.00 0.00 33.17 2.74
4162 4453 6.527423 AGAAACATGAGAAAACCATGCATTT 58.473 32.000 0.00 0.00 43.76 2.32
4197 4488 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4198 4489 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4199 4490 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4200 4491 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4201 4492 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4202 4493 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
4203 4494 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
4204 4495 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
4205 4496 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
4206 4497 9.765795 ATCTCCAAAGACTTATATTTAGGAACG 57.234 33.333 0.00 0.00 33.32 3.95
4226 4517 9.832445 GTATGTAGTCTTTTATTGGAATCTCCA 57.168 33.333 0.00 0.00 46.61 3.86
4227 4518 8.979574 CGTATGTAGTCTTTTATTGGAATCTCC 58.020 37.037 0.00 0.00 36.96 3.71
4228 4519 8.979574 CCGTATGTAGTCTTTTATTGGAATCTC 58.020 37.037 0.00 0.00 0.00 2.75
4229 4520 8.701895 TCCGTATGTAGTCTTTTATTGGAATCT 58.298 33.333 0.00 0.00 0.00 2.40
4230 4521 8.882415 TCCGTATGTAGTCTTTTATTGGAATC 57.118 34.615 0.00 0.00 0.00 2.52
4231 4522 7.441458 GCTCCGTATGTAGTCTTTTATTGGAAT 59.559 37.037 0.00 0.00 0.00 3.01
4232 4523 6.759827 GCTCCGTATGTAGTCTTTTATTGGAA 59.240 38.462 0.00 0.00 0.00 3.53
4233 4524 6.127281 TGCTCCGTATGTAGTCTTTTATTGGA 60.127 38.462 0.00 0.00 0.00 3.53
4234 4525 6.046593 TGCTCCGTATGTAGTCTTTTATTGG 58.953 40.000 0.00 0.00 0.00 3.16
4235 4526 7.534085 TTGCTCCGTATGTAGTCTTTTATTG 57.466 36.000 0.00 0.00 0.00 1.90
4236 4527 8.556213 TTTTGCTCCGTATGTAGTCTTTTATT 57.444 30.769 0.00 0.00 0.00 1.40
4237 4528 8.612619 CATTTTGCTCCGTATGTAGTCTTTTAT 58.387 33.333 0.00 0.00 0.00 1.40
4238 4529 7.820386 TCATTTTGCTCCGTATGTAGTCTTTTA 59.180 33.333 0.00 0.00 0.00 1.52
4239 4530 6.653320 TCATTTTGCTCCGTATGTAGTCTTTT 59.347 34.615 0.00 0.00 0.00 2.27
4240 4531 6.170506 TCATTTTGCTCCGTATGTAGTCTTT 58.829 36.000 0.00 0.00 0.00 2.52
4241 4532 5.730550 TCATTTTGCTCCGTATGTAGTCTT 58.269 37.500 0.00 0.00 0.00 3.01
4242 4533 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
4243 4534 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4244 4535 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4245 4536 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4246 4537 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4247 4538 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4248 4539 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4249 4540 5.295292 CAGATTCACTCATTTTGCTCCGTAT 59.705 40.000 0.00 0.00 0.00 3.06
4250 4541 4.631377 CAGATTCACTCATTTTGCTCCGTA 59.369 41.667 0.00 0.00 0.00 4.02
4251 4542 3.438087 CAGATTCACTCATTTTGCTCCGT 59.562 43.478 0.00 0.00 0.00 4.69
4252 4543 3.730061 GCAGATTCACTCATTTTGCTCCG 60.730 47.826 0.00 0.00 0.00 4.63
4253 4544 3.192001 TGCAGATTCACTCATTTTGCTCC 59.808 43.478 0.00 0.00 0.00 4.70
4254 4545 4.082895 AGTGCAGATTCACTCATTTTGCTC 60.083 41.667 0.00 0.00 43.28 4.26
4255 4546 3.825014 AGTGCAGATTCACTCATTTTGCT 59.175 39.130 0.00 0.00 43.28 3.91
4256 4547 4.170292 AGTGCAGATTCACTCATTTTGC 57.830 40.909 0.00 0.00 43.28 3.68
4265 4556 7.038659 AGACATACTTTAGAGTGCAGATTCAC 58.961 38.462 0.00 0.00 36.60 3.18
4266 4557 7.175347 AGACATACTTTAGAGTGCAGATTCA 57.825 36.000 0.00 0.00 36.60 2.57
4294 4585 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
4296 4587 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
4297 4588 9.832445 AGATTTCAATACAAACTACATACGGAT 57.168 29.630 0.00 0.00 0.00 4.18
4298 4589 9.661563 AAGATTTCAATACAAACTACATACGGA 57.338 29.630 0.00 0.00 0.00 4.69
4326 4617 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
4327 4618 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
4328 4619 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
4329 4620 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
4330 4621 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
4331 4622 9.327731 ACTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
4334 4625 9.327731 CTTACTACTCCCTCCATTCCTAAATAT 57.672 37.037 0.00 0.00 0.00 1.28
4335 4626 7.234988 GCTTACTACTCCCTCCATTCCTAAATA 59.765 40.741 0.00 0.00 0.00 1.40
4336 4627 6.043358 GCTTACTACTCCCTCCATTCCTAAAT 59.957 42.308 0.00 0.00 0.00 1.40
4337 4628 5.365895 GCTTACTACTCCCTCCATTCCTAAA 59.634 44.000 0.00 0.00 0.00 1.85
4338 4629 4.900054 GCTTACTACTCCCTCCATTCCTAA 59.100 45.833 0.00 0.00 0.00 2.69
4339 4630 4.170251 AGCTTACTACTCCCTCCATTCCTA 59.830 45.833 0.00 0.00 0.00 2.94
4340 4631 3.051727 AGCTTACTACTCCCTCCATTCCT 60.052 47.826 0.00 0.00 0.00 3.36
4341 4632 3.310193 AGCTTACTACTCCCTCCATTCC 58.690 50.000 0.00 0.00 0.00 3.01
4342 4633 6.673839 ATTAGCTTACTACTCCCTCCATTC 57.326 41.667 0.00 0.00 0.00 2.67
4343 4634 6.615726 TCAATTAGCTTACTACTCCCTCCATT 59.384 38.462 0.00 0.00 0.00 3.16
4344 4635 6.143915 TCAATTAGCTTACTACTCCCTCCAT 58.856 40.000 0.00 0.00 0.00 3.41
4345 4636 5.525484 TCAATTAGCTTACTACTCCCTCCA 58.475 41.667 0.00 0.00 0.00 3.86
4346 4637 6.042208 ACATCAATTAGCTTACTACTCCCTCC 59.958 42.308 0.00 0.00 0.00 4.30
4347 4638 6.926272 CACATCAATTAGCTTACTACTCCCTC 59.074 42.308 0.00 0.00 0.00 4.30
4348 4639 6.611642 TCACATCAATTAGCTTACTACTCCCT 59.388 38.462 0.00 0.00 0.00 4.20
4349 4640 6.817184 TCACATCAATTAGCTTACTACTCCC 58.183 40.000 0.00 0.00 0.00 4.30
4350 4641 6.926272 CCTCACATCAATTAGCTTACTACTCC 59.074 42.308 0.00 0.00 0.00 3.85
4351 4642 7.493367 ACCTCACATCAATTAGCTTACTACTC 58.507 38.462 0.00 0.00 0.00 2.59
4352 4643 7.425224 ACCTCACATCAATTAGCTTACTACT 57.575 36.000 0.00 0.00 0.00 2.57
4353 4644 9.197694 CATACCTCACATCAATTAGCTTACTAC 57.802 37.037 0.00 0.00 0.00 2.73
4354 4645 8.924303 ACATACCTCACATCAATTAGCTTACTA 58.076 33.333 0.00 0.00 0.00 1.82
4355 4646 7.796054 ACATACCTCACATCAATTAGCTTACT 58.204 34.615 0.00 0.00 0.00 2.24
4394 4688 2.026075 CGGTGGTTAAACCCAAGGGATA 60.026 50.000 13.15 1.73 37.50 2.59
4440 4734 3.607775 CGAGCTTCGCCCATGAAATATTG 60.608 47.826 0.00 0.00 31.14 1.90
4503 4798 2.575694 CGAAGGTCATCTCAGTCCAG 57.424 55.000 0.00 0.00 0.00 3.86
4539 4834 4.691860 AGCTTTGATTGAGATCCAAACG 57.308 40.909 1.49 0.00 38.43 3.60
4601 4896 4.436050 GCAGCGTCAATTAATATGGATCGG 60.436 45.833 0.00 0.00 0.00 4.18
4644 4939 3.442076 AGTTTGTTACTCCCTCCGATCT 58.558 45.455 0.00 0.00 28.23 2.75
4724 5071 0.325296 AATCCGCCTCCACCACTCTA 60.325 55.000 0.00 0.00 0.00 2.43
4725 5072 1.201429 AAATCCGCCTCCACCACTCT 61.201 55.000 0.00 0.00 0.00 3.24
4726 5073 1.026718 CAAATCCGCCTCCACCACTC 61.027 60.000 0.00 0.00 0.00 3.51
4727 5074 1.002134 CAAATCCGCCTCCACCACT 60.002 57.895 0.00 0.00 0.00 4.00
4728 5075 1.303317 ACAAATCCGCCTCCACCAC 60.303 57.895 0.00 0.00 0.00 4.16
4729 5076 1.303236 CACAAATCCGCCTCCACCA 60.303 57.895 0.00 0.00 0.00 4.17
4730 5077 2.046285 CCACAAATCCGCCTCCACC 61.046 63.158 0.00 0.00 0.00 4.61
4731 5078 1.303317 ACCACAAATCCGCCTCCAC 60.303 57.895 0.00 0.00 0.00 4.02
4732 5079 1.002624 GACCACAAATCCGCCTCCA 60.003 57.895 0.00 0.00 0.00 3.86
4733 5080 0.539986 TAGACCACAAATCCGCCTCC 59.460 55.000 0.00 0.00 0.00 4.30
4734 5081 2.213499 CATAGACCACAAATCCGCCTC 58.787 52.381 0.00 0.00 0.00 4.70
4735 5082 1.134098 CCATAGACCACAAATCCGCCT 60.134 52.381 0.00 0.00 0.00 5.52
4736 5083 1.308998 CCATAGACCACAAATCCGCC 58.691 55.000 0.00 0.00 0.00 6.13
4737 5084 1.308998 CCCATAGACCACAAATCCGC 58.691 55.000 0.00 0.00 0.00 5.54
4738 5085 1.488812 TCCCCATAGACCACAAATCCG 59.511 52.381 0.00 0.00 0.00 4.18
4739 5086 2.241176 TGTCCCCATAGACCACAAATCC 59.759 50.000 0.00 0.00 35.83 3.01
4740 5087 3.644966 TGTCCCCATAGACCACAAATC 57.355 47.619 0.00 0.00 35.83 2.17
4741 5088 3.788142 AGATGTCCCCATAGACCACAAAT 59.212 43.478 0.00 0.00 35.83 2.32
4742 5089 3.189606 AGATGTCCCCATAGACCACAAA 58.810 45.455 0.00 0.00 35.83 2.83
4743 5090 2.845659 AGATGTCCCCATAGACCACAA 58.154 47.619 0.00 0.00 35.83 3.33
4744 5091 2.568546 AGATGTCCCCATAGACCACA 57.431 50.000 0.00 0.00 35.83 4.17
4745 5092 3.305720 TGTAGATGTCCCCATAGACCAC 58.694 50.000 0.00 0.00 35.83 4.16
4746 5093 3.699025 TGTAGATGTCCCCATAGACCA 57.301 47.619 0.00 0.00 35.83 4.02
4747 5094 3.515901 GGATGTAGATGTCCCCATAGACC 59.484 52.174 0.00 0.00 35.83 3.85
4748 5095 4.421131 AGGATGTAGATGTCCCCATAGAC 58.579 47.826 0.00 0.00 35.00 2.59
4749 5096 4.767000 AGGATGTAGATGTCCCCATAGA 57.233 45.455 0.00 0.00 35.00 1.98
4750 5097 7.234371 CCATATAGGATGTAGATGTCCCCATAG 59.766 44.444 0.00 0.00 41.22 2.23
4751 5098 7.075797 CCATATAGGATGTAGATGTCCCCATA 58.924 42.308 0.00 0.00 41.22 2.74
4752 5099 5.907662 CCATATAGGATGTAGATGTCCCCAT 59.092 44.000 0.00 0.00 41.22 4.00
4753 5100 5.280499 CCATATAGGATGTAGATGTCCCCA 58.720 45.833 0.00 0.00 41.22 4.96
4754 5101 4.656112 CCCATATAGGATGTAGATGTCCCC 59.344 50.000 0.00 0.00 41.22 4.81
4755 5102 5.529289 TCCCATATAGGATGTAGATGTCCC 58.471 45.833 0.00 0.00 41.22 4.46
4756 5103 7.682787 AATCCCATATAGGATGTAGATGTCC 57.317 40.000 3.20 0.00 46.31 4.02
4757 5104 8.986991 AGAAATCCCATATAGGATGTAGATGTC 58.013 37.037 3.20 0.00 46.31 3.06
4758 5105 8.923838 AGAAATCCCATATAGGATGTAGATGT 57.076 34.615 3.20 0.00 46.31 3.06
4792 5139 9.447157 TCAGGAATTTTTGACTTTTTGTTGAAT 57.553 25.926 0.00 0.00 0.00 2.57
4793 5140 8.839310 TCAGGAATTTTTGACTTTTTGTTGAA 57.161 26.923 0.00 0.00 0.00 2.69
4794 5141 8.839310 TTCAGGAATTTTTGACTTTTTGTTGA 57.161 26.923 0.00 0.00 0.00 3.18
4795 5142 9.890352 TTTTCAGGAATTTTTGACTTTTTGTTG 57.110 25.926 0.00 0.00 0.00 3.33
4831 5178 9.367444 CGAGTACAATAGAAGGTCAAGTTTATT 57.633 33.333 0.00 0.00 0.00 1.40
4832 5179 8.529476 ACGAGTACAATAGAAGGTCAAGTTTAT 58.471 33.333 0.00 0.00 0.00 1.40
4833 5180 7.811236 CACGAGTACAATAGAAGGTCAAGTTTA 59.189 37.037 0.00 0.00 0.00 2.01
4834 5181 6.645415 CACGAGTACAATAGAAGGTCAAGTTT 59.355 38.462 0.00 0.00 0.00 2.66
4835 5182 6.015688 TCACGAGTACAATAGAAGGTCAAGTT 60.016 38.462 0.00 0.00 0.00 2.66
4836 5183 5.475909 TCACGAGTACAATAGAAGGTCAAGT 59.524 40.000 0.00 0.00 0.00 3.16
4837 5184 5.950883 TCACGAGTACAATAGAAGGTCAAG 58.049 41.667 0.00 0.00 0.00 3.02
4838 5185 5.708697 TCTCACGAGTACAATAGAAGGTCAA 59.291 40.000 0.00 0.00 0.00 3.18
4839 5186 5.250982 TCTCACGAGTACAATAGAAGGTCA 58.749 41.667 0.00 0.00 0.00 4.02
4840 5187 5.814764 TCTCACGAGTACAATAGAAGGTC 57.185 43.478 0.00 0.00 0.00 3.85
4841 5188 6.585695 TTTCTCACGAGTACAATAGAAGGT 57.414 37.500 0.00 0.00 0.00 3.50
4842 5189 7.884816 TTTTTCTCACGAGTACAATAGAAGG 57.115 36.000 0.00 0.00 0.00 3.46
4865 5212 7.402054 AGGGAGATTTTCTTTTTGTGGTTTTT 58.598 30.769 0.00 0.00 0.00 1.94
4866 5213 6.957631 AGGGAGATTTTCTTTTTGTGGTTTT 58.042 32.000 0.00 0.00 0.00 2.43
4867 5214 6.560003 AGGGAGATTTTCTTTTTGTGGTTT 57.440 33.333 0.00 0.00 0.00 3.27
4868 5215 6.560003 AAGGGAGATTTTCTTTTTGTGGTT 57.440 33.333 0.00 0.00 0.00 3.67
4869 5216 6.156083 TCAAAGGGAGATTTTCTTTTTGTGGT 59.844 34.615 0.00 0.00 34.11 4.16
4870 5217 6.479990 GTCAAAGGGAGATTTTCTTTTTGTGG 59.520 38.462 0.00 0.00 34.11 4.17
4871 5218 7.267857 AGTCAAAGGGAGATTTTCTTTTTGTG 58.732 34.615 0.00 0.00 34.11 3.33
4872 5219 7.423844 AGTCAAAGGGAGATTTTCTTTTTGT 57.576 32.000 0.00 0.00 34.11 2.83
4873 5220 8.200120 AGAAGTCAAAGGGAGATTTTCTTTTTG 58.800 33.333 0.00 0.00 33.92 2.44
4874 5221 8.311395 AGAAGTCAAAGGGAGATTTTCTTTTT 57.689 30.769 0.00 0.00 0.00 1.94
4875 5222 7.904558 AGAAGTCAAAGGGAGATTTTCTTTT 57.095 32.000 0.00 0.00 0.00 2.27
4876 5223 7.904558 AAGAAGTCAAAGGGAGATTTTCTTT 57.095 32.000 0.00 0.00 32.62 2.52
4877 5224 7.904558 AAAGAAGTCAAAGGGAGATTTTCTT 57.095 32.000 0.00 0.00 35.33 2.52
4878 5225 7.561356 TGAAAAGAAGTCAAAGGGAGATTTTCT 59.439 33.333 0.00 0.00 35.93 2.52
4879 5226 7.716612 TGAAAAGAAGTCAAAGGGAGATTTTC 58.283 34.615 0.00 0.00 35.65 2.29
4880 5227 7.660030 TGAAAAGAAGTCAAAGGGAGATTTT 57.340 32.000 0.00 0.00 0.00 1.82
4881 5228 7.660030 TTGAAAAGAAGTCAAAGGGAGATTT 57.340 32.000 0.00 0.00 32.13 2.17
4882 5229 7.660030 TTTGAAAAGAAGTCAAAGGGAGATT 57.340 32.000 0.00 0.00 39.46 2.40
4883 5230 7.660030 TTTTGAAAAGAAGTCAAAGGGAGAT 57.340 32.000 0.47 0.00 43.76 2.75
4884 5231 7.475137 TTTTTGAAAAGAAGTCAAAGGGAGA 57.525 32.000 0.47 0.00 43.76 3.71
4922 5269 7.599245 ATAGGTCACTATTCACGCTATTTTAGC 59.401 37.037 0.00 0.00 41.41 3.09
4925 5272 9.998106 ATTATAGGTCACTATTCACGCTATTTT 57.002 29.630 0.00 0.00 40.35 1.82
4928 5275 8.407064 GCTATTATAGGTCACTATTCACGCTAT 58.593 37.037 1.12 0.00 40.35 2.97
4929 5276 7.392393 TGCTATTATAGGTCACTATTCACGCTA 59.608 37.037 1.12 0.00 40.35 4.26
4930 5277 6.208797 TGCTATTATAGGTCACTATTCACGCT 59.791 38.462 1.12 0.00 40.35 5.07
4931 5278 6.387465 TGCTATTATAGGTCACTATTCACGC 58.613 40.000 1.12 0.00 40.35 5.34
4932 5279 8.812147 TTTGCTATTATAGGTCACTATTCACG 57.188 34.615 1.12 0.00 40.35 4.35
4970 5317 3.608316 AAGTTGACCTTGCAGCAAAAA 57.392 38.095 9.65 0.00 30.18 1.94
4971 5318 3.608316 AAAGTTGACCTTGCAGCAAAA 57.392 38.095 9.65 0.00 32.32 2.44
4972 5319 3.260740 CAAAAGTTGACCTTGCAGCAAA 58.739 40.909 9.65 0.00 32.32 3.68
4973 5320 2.233431 ACAAAAGTTGACCTTGCAGCAA 59.767 40.909 7.81 7.81 32.32 3.91
4974 5321 1.824230 ACAAAAGTTGACCTTGCAGCA 59.176 42.857 0.00 0.00 32.32 4.41
4975 5322 2.584492 ACAAAAGTTGACCTTGCAGC 57.416 45.000 0.00 0.00 32.32 5.25
4976 5323 5.861222 AAAAACAAAAGTTGACCTTGCAG 57.139 34.783 0.00 0.00 32.32 4.41
5015 5362 9.419297 CACTTGACTTACTTTTGCACTAGTATA 57.581 33.333 7.69 0.00 0.00 1.47
5016 5363 7.931948 ACACTTGACTTACTTTTGCACTAGTAT 59.068 33.333 7.69 0.00 0.00 2.12
5017 5364 7.270047 ACACTTGACTTACTTTTGCACTAGTA 58.730 34.615 0.00 3.57 0.00 1.82
5018 5365 6.113411 ACACTTGACTTACTTTTGCACTAGT 58.887 36.000 5.34 5.34 0.00 2.57
5019 5366 6.604735 ACACTTGACTTACTTTTGCACTAG 57.395 37.500 0.00 0.00 0.00 2.57
5020 5367 6.995511 AACACTTGACTTACTTTTGCACTA 57.004 33.333 0.00 0.00 0.00 2.74
5021 5368 5.897377 AACACTTGACTTACTTTTGCACT 57.103 34.783 0.00 0.00 0.00 4.40
5022 5369 6.364976 ACAAAACACTTGACTTACTTTTGCAC 59.635 34.615 0.00 0.00 33.72 4.57
5023 5370 6.451393 ACAAAACACTTGACTTACTTTTGCA 58.549 32.000 0.00 0.00 33.72 4.08
5024 5371 6.584563 TGACAAAACACTTGACTTACTTTTGC 59.415 34.615 0.00 0.00 33.72 3.68
5025 5372 8.514136 TTGACAAAACACTTGACTTACTTTTG 57.486 30.769 0.00 0.00 35.61 2.44
5026 5373 9.535878 TTTTGACAAAACACTTGACTTACTTTT 57.464 25.926 9.30 0.00 0.00 2.27
5027 5374 9.705290 ATTTTGACAAAACACTTGACTTACTTT 57.295 25.926 15.36 0.00 32.37 2.66
5030 5377 9.783256 ACTATTTTGACAAAACACTTGACTTAC 57.217 29.630 15.36 0.00 32.37 2.34
5032 5379 9.353999 GAACTATTTTGACAAAACACTTGACTT 57.646 29.630 15.36 0.00 32.37 3.01
5033 5380 8.739972 AGAACTATTTTGACAAAACACTTGACT 58.260 29.630 15.36 7.03 32.37 3.41
5034 5381 8.911247 AGAACTATTTTGACAAAACACTTGAC 57.089 30.769 15.36 5.14 32.37 3.18
5037 5384 9.797556 GGTAAGAACTATTTTGACAAAACACTT 57.202 29.630 15.36 15.89 32.37 3.16
5038 5385 9.185680 AGGTAAGAACTATTTTGACAAAACACT 57.814 29.630 15.36 3.23 32.37 3.55
5097 5444 9.435570 GGTTGTATATACACCCTATATGGAGAT 57.564 37.037 19.40 0.00 36.03 2.75
5098 5445 8.403474 TGGTTGTATATACACCCTATATGGAGA 58.597 37.037 24.87 4.15 39.28 3.71
5099 5446 8.603898 TGGTTGTATATACACCCTATATGGAG 57.396 38.462 24.87 0.00 39.28 3.86
5100 5447 7.622081 CCTGGTTGTATATACACCCTATATGGA 59.378 40.741 24.87 7.01 39.28 3.41
5101 5448 7.622081 TCCTGGTTGTATATACACCCTATATGG 59.378 40.741 24.87 18.54 39.28 2.74
5102 5449 8.603898 TCCTGGTTGTATATACACCCTATATG 57.396 38.462 24.87 12.05 39.28 1.78
5103 5450 9.043548 GTTCCTGGTTGTATATACACCCTATAT 57.956 37.037 24.87 0.00 39.28 0.86
5104 5451 8.011883 TGTTCCTGGTTGTATATACACCCTATA 58.988 37.037 24.87 11.03 39.28 1.31
5105 5452 6.847567 TGTTCCTGGTTGTATATACACCCTAT 59.152 38.462 24.87 0.00 39.28 2.57
5106 5453 6.098695 GTGTTCCTGGTTGTATATACACCCTA 59.901 42.308 24.87 13.50 39.28 3.53
5107 5454 5.034200 TGTTCCTGGTTGTATATACACCCT 58.966 41.667 24.87 0.00 39.28 4.34
5108 5455 5.121105 GTGTTCCTGGTTGTATATACACCC 58.879 45.833 19.76 19.76 39.02 4.61
5109 5456 5.736813 TGTGTTCCTGGTTGTATATACACC 58.263 41.667 15.20 17.88 35.64 4.16
5110 5457 6.877322 ACTTGTGTTCCTGGTTGTATATACAC 59.123 38.462 15.20 10.24 35.64 2.90
5111 5458 6.876789 CACTTGTGTTCCTGGTTGTATATACA 59.123 38.462 11.62 11.62 0.00 2.29
5112 5459 6.877322 ACACTTGTGTTCCTGGTTGTATATAC 59.123 38.462 5.89 5.89 0.00 1.47
5113 5460 7.011499 ACACTTGTGTTCCTGGTTGTATATA 57.989 36.000 0.00 0.00 0.00 0.86
5114 5461 5.876357 ACACTTGTGTTCCTGGTTGTATAT 58.124 37.500 0.00 0.00 0.00 0.86
5115 5462 5.298989 ACACTTGTGTTCCTGGTTGTATA 57.701 39.130 0.00 0.00 0.00 1.47
5116 5463 4.164843 ACACTTGTGTTCCTGGTTGTAT 57.835 40.909 0.00 0.00 0.00 2.29
5117 5464 3.637911 ACACTTGTGTTCCTGGTTGTA 57.362 42.857 0.00 0.00 0.00 2.41
5118 5465 2.507407 ACACTTGTGTTCCTGGTTGT 57.493 45.000 0.00 0.00 0.00 3.32
5119 5466 5.507315 GGAAATACACTTGTGTTCCTGGTTG 60.507 44.000 11.80 0.00 38.98 3.77
5120 5467 4.583073 GGAAATACACTTGTGTTCCTGGTT 59.417 41.667 11.80 0.00 38.98 3.67
5121 5468 4.142038 GGAAATACACTTGTGTTCCTGGT 58.858 43.478 11.80 0.00 38.98 4.00
5122 5469 3.506067 GGGAAATACACTTGTGTTCCTGG 59.494 47.826 17.42 0.00 40.49 4.45
5123 5470 3.506067 GGGGAAATACACTTGTGTTCCTG 59.494 47.826 17.42 0.00 40.49 3.86
5124 5471 3.139397 TGGGGAAATACACTTGTGTTCCT 59.861 43.478 17.42 3.19 40.49 3.36
5125 5472 3.492337 TGGGGAAATACACTTGTGTTCC 58.508 45.455 11.80 12.10 40.20 3.62
5126 5473 4.394729 TCTGGGGAAATACACTTGTGTTC 58.605 43.478 11.80 3.90 0.00 3.18
5127 5474 4.141251 ACTCTGGGGAAATACACTTGTGTT 60.141 41.667 11.80 0.00 0.00 3.32
5128 5475 3.394606 ACTCTGGGGAAATACACTTGTGT 59.605 43.478 11.30 11.30 0.00 3.72
5129 5476 3.753272 CACTCTGGGGAAATACACTTGTG 59.247 47.826 0.00 0.00 0.00 3.33
5130 5477 3.244911 CCACTCTGGGGAAATACACTTGT 60.245 47.826 0.00 0.00 32.67 3.16
5131 5478 3.244911 ACCACTCTGGGGAAATACACTTG 60.245 47.826 0.00 0.00 43.37 3.16
5132 5479 2.986728 ACCACTCTGGGGAAATACACTT 59.013 45.455 0.00 0.00 43.37 3.16
5133 5480 2.632537 ACCACTCTGGGGAAATACACT 58.367 47.619 0.00 0.00 43.37 3.55
5134 5481 4.514401 CTTACCACTCTGGGGAAATACAC 58.486 47.826 0.00 0.00 43.37 2.90
5135 5482 3.054655 GCTTACCACTCTGGGGAAATACA 60.055 47.826 0.00 0.00 43.37 2.29
5136 5483 3.054655 TGCTTACCACTCTGGGGAAATAC 60.055 47.826 0.00 0.00 43.37 1.89
5137 5484 3.186283 TGCTTACCACTCTGGGGAAATA 58.814 45.455 0.00 0.00 43.37 1.40
5138 5485 1.992557 TGCTTACCACTCTGGGGAAAT 59.007 47.619 0.00 0.00 43.37 2.17
5139 5486 1.440618 TGCTTACCACTCTGGGGAAA 58.559 50.000 0.00 0.00 43.37 3.13
5140 5487 1.668826 ATGCTTACCACTCTGGGGAA 58.331 50.000 0.00 0.00 43.37 3.97
5141 5488 1.668826 AATGCTTACCACTCTGGGGA 58.331 50.000 0.00 0.00 43.37 4.81
5142 5489 2.514458 AAATGCTTACCACTCTGGGG 57.486 50.000 0.00 0.00 43.37 4.96
5143 5490 3.826157 TGAAAAATGCTTACCACTCTGGG 59.174 43.478 0.00 0.00 43.37 4.45
5144 5491 4.321230 GGTGAAAAATGCTTACCACTCTGG 60.321 45.833 0.00 0.00 45.02 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.