Multiple sequence alignment - TraesCS1D01G280800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G280800 chr1D 100.000 6088 0 0 1 6088 379428014 379434101 0.000000e+00 11243
1 TraesCS1D01G280800 chr1D 91.707 410 22 9 358 761 488823853 488824256 5.330000e-155 558
2 TraesCS1D01G280800 chr1A 90.371 4341 268 79 1819 6079 480425387 480429657 0.000000e+00 5563
3 TraesCS1D01G280800 chr1A 86.667 1065 46 37 762 1792 480424387 480425389 0.000000e+00 1092
4 TraesCS1D01G280800 chr1A 91.525 413 21 7 360 763 107111266 107111673 1.920000e-154 556
5 TraesCS1D01G280800 chr1A 86.027 365 39 6 1 358 480424037 480424396 1.240000e-101 381
6 TraesCS1D01G280800 chr1B 88.626 1776 138 40 3753 5493 508393649 508395395 0.000000e+00 2102
7 TraesCS1D01G280800 chr1B 93.270 1055 48 11 963 2013 508390900 508391935 0.000000e+00 1533
8 TraesCS1D01G280800 chr1B 91.000 600 30 12 5491 6088 508395480 508396057 0.000000e+00 787
9 TraesCS1D01G280800 chr1B 86.192 449 27 14 2838 3265 508392611 508393045 2.590000e-123 453
10 TraesCS1D01G280800 chr1B 89.851 335 28 6 2140 2473 508391935 508392264 5.640000e-115 425
11 TraesCS1D01G280800 chr1B 93.820 178 4 3 762 933 508390731 508390907 1.680000e-65 261
12 TraesCS1D01G280800 chr1B 83.262 233 20 14 2467 2693 508392360 508392579 4.810000e-46 196
13 TraesCS1D01G280800 chr1B 94.340 106 5 1 2012 2117 368408267 368408371 1.760000e-35 161
14 TraesCS1D01G280800 chr2D 91.169 419 23 11 360 768 647821977 647821563 1.920000e-154 556
15 TraesCS1D01G280800 chr7A 91.220 410 28 5 359 761 567710374 567709966 8.920000e-153 551
16 TraesCS1D01G280800 chr7A 90.821 414 20 11 357 761 25900782 25901186 6.940000e-149 538
17 TraesCS1D01G280800 chr7A 90.408 417 23 10 361 765 571941973 571941562 3.230000e-147 532
18 TraesCS1D01G280800 chr7A 75.879 825 121 49 5305 6088 648140341 648141128 3.490000e-92 350
19 TraesCS1D01G280800 chr2A 91.019 412 28 5 361 764 442513403 442513813 1.150000e-151 547
20 TraesCS1D01G280800 chr4B 91.220 410 14 12 361 758 644714381 644713982 6.940000e-149 538
21 TraesCS1D01G280800 chr5A 90.488 410 29 7 360 761 229498441 229498848 3.230000e-147 532
22 TraesCS1D01G280800 chr5A 74.437 755 116 41 5375 6083 378514459 378513736 2.820000e-63 254
23 TraesCS1D01G280800 chr7B 75.180 834 121 51 5305 6088 612308818 612309615 1.270000e-81 315
24 TraesCS1D01G280800 chr5D 80.105 382 49 14 5726 6088 286192810 286192437 6.050000e-65 259
25 TraesCS1D01G280800 chr4D 90.909 121 7 4 1994 2111 26254068 26253949 6.320000e-35 159
26 TraesCS1D01G280800 chr6B 95.876 97 4 0 2012 2108 641674163 641674067 2.270000e-34 158
27 TraesCS1D01G280800 chr6B 91.346 104 8 1 2010 2113 14820677 14820575 2.290000e-29 141
28 TraesCS1D01G280800 chr3B 92.727 110 7 1 2001 2109 548846953 548846844 2.270000e-34 158
29 TraesCS1D01G280800 chr3B 91.818 110 7 2 1999 2108 551006607 551006714 1.060000e-32 152
30 TraesCS1D01G280800 chr4A 91.892 111 7 2 1998 2108 475917219 475917327 2.940000e-33 154
31 TraesCS1D01G280800 chr2B 90.991 111 10 0 2000 2110 457144381 457144491 3.800000e-32 150
32 TraesCS1D01G280800 chr6A 88.618 123 12 2 2012 2132 596589445 596589323 1.370000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G280800 chr1D 379428014 379434101 6087 False 11243.000000 11243 100.000000 1 6088 1 chr1D.!!$F1 6087
1 TraesCS1D01G280800 chr1A 480424037 480429657 5620 False 2345.333333 5563 87.688333 1 6079 3 chr1A.!!$F2 6078
2 TraesCS1D01G280800 chr1B 508390731 508396057 5326 False 822.428571 2102 89.431571 762 6088 7 chr1B.!!$F2 5326
3 TraesCS1D01G280800 chr7A 648140341 648141128 787 False 350.000000 350 75.879000 5305 6088 1 chr7A.!!$F2 783
4 TraesCS1D01G280800 chr5A 378513736 378514459 723 True 254.000000 254 74.437000 5375 6083 1 chr5A.!!$R1 708
5 TraesCS1D01G280800 chr7B 612308818 612309615 797 False 315.000000 315 75.180000 5305 6088 1 chr7B.!!$F1 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 400 0.031449 GAGACCGAGCTCCACATAGC 59.969 60.000 8.47 0.00 43.11 2.97 F
733 741 0.033228 TTGGCAAAACGGGCTCAATG 59.967 50.000 0.00 0.00 0.00 2.82 F
736 744 0.109132 GCAAAACGGGCTCAATGGAG 60.109 55.000 0.00 0.00 44.33 3.86 F
962 975 0.469144 GGACCAAGGAAAGCACCCAA 60.469 55.000 0.00 0.00 0.00 4.12 F
1447 1493 1.154225 CGCGATTTGTCTGCCAACC 60.154 57.895 0.00 0.00 31.20 3.77 F
1579 1625 1.444933 AGGGTCATCAGTGTTTCCCA 58.555 50.000 14.19 0.00 35.75 4.37 F
3141 3302 1.470285 CGCTCCATTTTGGCCAATGAG 60.470 52.381 21.26 21.38 37.47 2.90 F
4382 4776 0.321919 TCTGGTTGACCTCATGCAGC 60.322 55.000 1.34 0.00 36.82 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2143 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.0 0.00 0.0 0.00 4.12 R
2669 2828 2.025544 TTGTGCACGTTTACGCAATC 57.974 45.0 13.13 0.0 44.43 2.67 R
2718 2877 2.353704 GCAAATTGTCCCTTTGGCTACC 60.354 50.0 0.00 0.0 34.81 3.18 R
2785 2944 5.142639 ACTTGCCAGGCACATAATAATGAT 58.857 37.5 15.89 0.0 38.71 2.45 R
3119 3279 2.242797 ATTGGCCAAAATGGAGCGCC 62.243 55.0 24.71 0.0 40.96 6.53 R
3460 3653 0.459759 GGTCCCTAACTAGTGCGTGC 60.460 60.0 0.00 0.0 0.00 5.34 R
4935 5334 0.519077 GCTGTTCTTCCTCCAAAGCG 59.481 55.0 0.00 0.0 0.00 4.68 R
5372 5847 0.244721 GAATGGCTGTTTGGAGGTGC 59.755 55.0 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.880490 GGTTTGATTCACTGTGGTGTGTA 59.120 43.478 8.11 0.00 43.41 2.90
31 32 4.518970 GGTTTGATTCACTGTGGTGTGTAT 59.481 41.667 8.11 0.00 43.41 2.29
35 36 6.707440 TGATTCACTGTGGTGTGTATTTTT 57.293 33.333 8.11 0.00 43.41 1.94
69 70 4.365723 TCCTTCGTATCATTTTCCTACGC 58.634 43.478 0.00 0.00 38.43 4.42
74 75 1.663695 ATCATTTTCCTACGCGTGGG 58.336 50.000 33.44 33.44 0.00 4.61
76 77 1.208535 TCATTTTCCTACGCGTGGGAT 59.791 47.619 39.64 25.41 40.06 3.85
77 78 1.597663 CATTTTCCTACGCGTGGGATC 59.402 52.381 39.64 0.00 40.06 3.36
87 88 1.153568 CGTGGGATCGCACAGTCAT 60.154 57.895 33.82 0.00 0.00 3.06
95 96 3.005261 GGATCGCACAGTCATAGAGATGT 59.995 47.826 0.00 0.00 34.41 3.06
97 98 4.820284 TCGCACAGTCATAGAGATGTAG 57.180 45.455 0.00 0.00 34.41 2.74
109 110 6.351033 TCATAGAGATGTAGTGGTGTTTCACC 60.351 42.308 11.47 11.47 42.93 4.02
156 157 9.516314 AGTACTAATTCAGTTTTTCTTTTGCAC 57.484 29.630 0.00 0.00 38.80 4.57
192 193 0.766674 TCACTAACAGTGGGCCAGGT 60.767 55.000 6.40 5.53 45.94 4.00
218 219 2.267642 GGCACGCCACCACATAGA 59.732 61.111 2.36 0.00 35.81 1.98
227 228 1.645034 CACCACATAGACGCTTCCTG 58.355 55.000 0.00 0.00 0.00 3.86
247 248 3.259064 TGCGTCTATAAACTGGAGTTGC 58.741 45.455 0.00 0.00 38.44 4.17
249 250 3.871594 GCGTCTATAAACTGGAGTTGCAT 59.128 43.478 0.00 0.00 38.44 3.96
266 267 1.601903 GCATCGTATTTGCATCGGGAA 59.398 47.619 0.00 0.00 39.90 3.97
271 272 3.692101 TCGTATTTGCATCGGGAAACAAT 59.308 39.130 0.00 0.00 37.15 2.71
277 278 6.532365 TTTGCATCGGGAAACAATTTTAAC 57.468 33.333 0.00 0.00 28.60 2.01
279 280 3.610677 GCATCGGGAAACAATTTTAACCG 59.389 43.478 0.00 0.00 42.49 4.44
300 308 7.033530 ACCGTCAGTTTCATGTATTTTTCAA 57.966 32.000 0.00 0.00 0.00 2.69
315 323 9.474920 TGTATTTTTCAATTTTAAGCACCAGAG 57.525 29.630 0.00 0.00 0.00 3.35
331 339 2.354503 CCAGAGTGACCATCCTGTTCAG 60.355 54.545 0.00 0.00 0.00 3.02
333 341 0.326264 AGTGACCATCCTGTTCAGCC 59.674 55.000 0.00 0.00 0.00 4.85
342 350 4.458397 CATCCTGTTCAGCCTGATGTATT 58.542 43.478 0.00 0.00 0.00 1.89
358 366 5.703592 TGATGTATTATCGGTGTATTTGCCC 59.296 40.000 0.00 0.00 0.00 5.36
359 367 5.037383 TGTATTATCGGTGTATTTGCCCA 57.963 39.130 0.00 0.00 0.00 5.36
361 369 5.886474 TGTATTATCGGTGTATTTGCCCAAA 59.114 36.000 0.00 0.00 34.46 3.28
362 370 5.923733 ATTATCGGTGTATTTGCCCAAAA 57.076 34.783 0.00 0.00 33.56 2.44
363 371 5.723672 TTATCGGTGTATTTGCCCAAAAA 57.276 34.783 0.00 0.00 33.56 1.94
379 387 0.307760 AAAAAGCAACGCAGAGACCG 59.692 50.000 0.00 0.00 0.00 4.79
380 388 0.531974 AAAAGCAACGCAGAGACCGA 60.532 50.000 0.00 0.00 0.00 4.69
381 389 0.946221 AAAGCAACGCAGAGACCGAG 60.946 55.000 0.00 0.00 0.00 4.63
382 390 3.482783 GCAACGCAGAGACCGAGC 61.483 66.667 0.00 0.00 0.00 5.03
383 391 2.259818 CAACGCAGAGACCGAGCT 59.740 61.111 0.00 0.00 0.00 4.09
384 392 1.803519 CAACGCAGAGACCGAGCTC 60.804 63.158 2.73 2.73 35.11 4.09
385 393 2.995872 AACGCAGAGACCGAGCTCC 61.996 63.158 8.47 0.00 35.49 4.70
386 394 3.443925 CGCAGAGACCGAGCTCCA 61.444 66.667 8.47 0.00 35.49 3.86
387 395 2.183046 GCAGAGACCGAGCTCCAC 59.817 66.667 8.47 0.00 35.49 4.02
388 396 2.640302 GCAGAGACCGAGCTCCACA 61.640 63.158 8.47 0.00 35.49 4.17
389 397 1.954362 GCAGAGACCGAGCTCCACAT 61.954 60.000 8.47 0.00 35.49 3.21
390 398 1.393603 CAGAGACCGAGCTCCACATA 58.606 55.000 8.47 0.00 35.49 2.29
391 399 1.336440 CAGAGACCGAGCTCCACATAG 59.664 57.143 8.47 0.00 35.49 2.23
392 400 0.031449 GAGACCGAGCTCCACATAGC 59.969 60.000 8.47 0.00 43.11 2.97
423 431 8.736751 TTTTTCAGCGAAAATACTATTTCCAC 57.263 30.769 14.24 0.00 40.50 4.02
424 432 7.441890 TTTCAGCGAAAATACTATTTCCACA 57.558 32.000 0.00 0.00 36.21 4.17
425 433 7.624360 TTCAGCGAAAATACTATTTCCACAT 57.376 32.000 0.00 0.00 36.21 3.21
426 434 8.725405 TTCAGCGAAAATACTATTTCCACATA 57.275 30.769 0.00 0.00 36.21 2.29
427 435 8.902540 TCAGCGAAAATACTATTTCCACATAT 57.097 30.769 0.00 0.00 36.21 1.78
428 436 9.337396 TCAGCGAAAATACTATTTCCACATATT 57.663 29.630 0.00 0.00 36.21 1.28
429 437 9.385902 CAGCGAAAATACTATTTCCACATATTG 57.614 33.333 0.00 0.00 36.21 1.90
430 438 9.337396 AGCGAAAATACTATTTCCACATATTGA 57.663 29.630 0.00 0.00 36.21 2.57
431 439 9.944663 GCGAAAATACTATTTCCACATATTGAA 57.055 29.630 0.00 0.00 36.21 2.69
527 535 9.647797 ATGTTCTCATGTAGTGTATACGAAAAA 57.352 29.630 0.00 0.00 32.51 1.94
528 536 9.135843 TGTTCTCATGTAGTGTATACGAAAAAG 57.864 33.333 0.00 0.00 0.00 2.27
529 537 9.350357 GTTCTCATGTAGTGTATACGAAAAAGA 57.650 33.333 0.00 0.00 0.00 2.52
573 581 6.929049 AGGCTTTATCTTTGTTGTTTTTAGGC 59.071 34.615 0.00 0.00 0.00 3.93
574 582 6.147164 GGCTTTATCTTTGTTGTTTTTAGGCC 59.853 38.462 0.00 0.00 0.00 5.19
575 583 6.704050 GCTTTATCTTTGTTGTTTTTAGGCCA 59.296 34.615 5.01 0.00 0.00 5.36
576 584 7.095649 GCTTTATCTTTGTTGTTTTTAGGCCAG 60.096 37.037 5.01 0.00 0.00 4.85
577 585 7.589958 TTATCTTTGTTGTTTTTAGGCCAGA 57.410 32.000 5.01 0.00 0.00 3.86
578 586 6.670695 ATCTTTGTTGTTTTTAGGCCAGAT 57.329 33.333 5.01 0.00 0.00 2.90
579 587 7.775053 ATCTTTGTTGTTTTTAGGCCAGATA 57.225 32.000 5.01 0.00 0.00 1.98
580 588 7.775053 TCTTTGTTGTTTTTAGGCCAGATAT 57.225 32.000 5.01 0.00 0.00 1.63
581 589 8.189119 TCTTTGTTGTTTTTAGGCCAGATATT 57.811 30.769 5.01 0.00 0.00 1.28
582 590 8.646900 TCTTTGTTGTTTTTAGGCCAGATATTT 58.353 29.630 5.01 0.00 0.00 1.40
583 591 8.825667 TTTGTTGTTTTTAGGCCAGATATTTC 57.174 30.769 5.01 0.00 0.00 2.17
584 592 7.775053 TGTTGTTTTTAGGCCAGATATTTCT 57.225 32.000 5.01 0.00 0.00 2.52
585 593 7.826690 TGTTGTTTTTAGGCCAGATATTTCTC 58.173 34.615 5.01 0.00 0.00 2.87
586 594 7.669722 TGTTGTTTTTAGGCCAGATATTTCTCT 59.330 33.333 5.01 0.00 0.00 3.10
587 595 8.523658 GTTGTTTTTAGGCCAGATATTTCTCTT 58.476 33.333 5.01 0.00 0.00 2.85
588 596 8.650143 TGTTTTTAGGCCAGATATTTCTCTTT 57.350 30.769 5.01 0.00 0.00 2.52
589 597 9.088987 TGTTTTTAGGCCAGATATTTCTCTTTT 57.911 29.630 5.01 0.00 0.00 2.27
590 598 9.929180 GTTTTTAGGCCAGATATTTCTCTTTTT 57.071 29.630 5.01 0.00 0.00 1.94
612 620 8.599055 TTTTTGTGTAGCATGCAAATAATTGA 57.401 26.923 21.98 0.00 38.94 2.57
613 621 8.599055 TTTTGTGTAGCATGCAAATAATTGAA 57.401 26.923 21.98 1.29 38.94 2.69
614 622 8.774890 TTTGTGTAGCATGCAAATAATTGAAT 57.225 26.923 21.98 0.00 38.94 2.57
615 623 8.774890 TTGTGTAGCATGCAAATAATTGAATT 57.225 26.923 21.98 0.00 38.94 2.17
616 624 9.866798 TTGTGTAGCATGCAAATAATTGAATTA 57.133 25.926 21.98 0.00 38.94 1.40
617 625 9.299963 TGTGTAGCATGCAAATAATTGAATTAC 57.700 29.630 21.98 9.03 38.94 1.89
618 626 9.299963 GTGTAGCATGCAAATAATTGAATTACA 57.700 29.630 21.98 11.56 38.94 2.41
622 630 9.772973 AGCATGCAAATAATTGAATTACATGAT 57.227 25.926 21.98 15.63 38.94 2.45
623 631 9.805966 GCATGCAAATAATTGAATTACATGATG 57.194 29.630 20.94 16.46 38.94 3.07
642 650 9.349713 ACATGATGAAACTTTTTACCTACTTGA 57.650 29.630 0.00 0.00 0.00 3.02
643 651 9.612620 CATGATGAAACTTTTTACCTACTTGAC 57.387 33.333 0.00 0.00 0.00 3.18
644 652 7.857569 TGATGAAACTTTTTACCTACTTGACG 58.142 34.615 0.00 0.00 0.00 4.35
645 653 7.711772 TGATGAAACTTTTTACCTACTTGACGA 59.288 33.333 0.00 0.00 0.00 4.20
646 654 7.846644 TGAAACTTTTTACCTACTTGACGAA 57.153 32.000 0.00 0.00 0.00 3.85
647 655 7.687445 TGAAACTTTTTACCTACTTGACGAAC 58.313 34.615 0.00 0.00 0.00 3.95
648 656 7.333921 TGAAACTTTTTACCTACTTGACGAACA 59.666 33.333 0.00 0.00 0.00 3.18
649 657 7.797038 AACTTTTTACCTACTTGACGAACAT 57.203 32.000 0.00 0.00 0.00 2.71
650 658 7.186021 ACTTTTTACCTACTTGACGAACATG 57.814 36.000 0.00 0.00 0.00 3.21
651 659 5.600908 TTTTACCTACTTGACGAACATGC 57.399 39.130 0.00 0.00 0.00 4.06
652 660 2.831685 ACCTACTTGACGAACATGCA 57.168 45.000 0.00 0.00 0.00 3.96
653 661 3.334583 ACCTACTTGACGAACATGCAT 57.665 42.857 0.00 0.00 0.00 3.96
654 662 4.465632 ACCTACTTGACGAACATGCATA 57.534 40.909 0.00 0.00 0.00 3.14
655 663 5.023533 ACCTACTTGACGAACATGCATAT 57.976 39.130 0.00 0.00 0.00 1.78
656 664 4.811024 ACCTACTTGACGAACATGCATATG 59.189 41.667 0.00 0.00 40.24 1.78
658 666 5.983118 CCTACTTGACGAACATGCATATGTA 59.017 40.000 0.00 0.00 46.54 2.29
659 667 6.646653 CCTACTTGACGAACATGCATATGTAT 59.353 38.462 0.00 1.99 46.54 2.29
660 668 6.925610 ACTTGACGAACATGCATATGTATT 57.074 33.333 3.23 0.00 46.54 1.89
661 669 7.320443 ACTTGACGAACATGCATATGTATTT 57.680 32.000 3.23 2.81 46.54 1.40
662 670 7.188834 ACTTGACGAACATGCATATGTATTTG 58.811 34.615 3.23 0.00 46.54 2.32
663 671 6.676237 TGACGAACATGCATATGTATTTGT 57.324 33.333 3.23 1.96 46.54 2.83
664 672 7.778470 TGACGAACATGCATATGTATTTGTA 57.222 32.000 3.23 0.00 46.54 2.41
665 673 8.376889 TGACGAACATGCATATGTATTTGTAT 57.623 30.769 3.23 0.00 46.54 2.29
666 674 9.482627 TGACGAACATGCATATGTATTTGTATA 57.517 29.630 3.23 0.00 46.54 1.47
725 733 8.794308 ATTTTCATTTTATTTTGGCAAAACGG 57.206 26.923 26.23 12.56 32.37 4.44
726 734 5.931441 TCATTTTATTTTGGCAAAACGGG 57.069 34.783 26.23 13.18 32.37 5.28
727 735 4.214332 TCATTTTATTTTGGCAAAACGGGC 59.786 37.500 26.23 0.00 32.37 6.13
728 736 3.477210 TTTATTTTGGCAAAACGGGCT 57.523 38.095 26.23 13.42 32.37 5.19
729 737 2.734276 TATTTTGGCAAAACGGGCTC 57.266 45.000 26.23 0.00 32.37 4.70
730 738 0.755686 ATTTTGGCAAAACGGGCTCA 59.244 45.000 26.23 3.31 32.37 4.26
731 739 0.537188 TTTTGGCAAAACGGGCTCAA 59.463 45.000 20.81 0.00 0.00 3.02
732 740 0.755686 TTTGGCAAAACGGGCTCAAT 59.244 45.000 10.83 0.00 0.00 2.57
733 741 0.033228 TTGGCAAAACGGGCTCAATG 59.967 50.000 0.00 0.00 0.00 2.82
734 742 1.079888 GGCAAAACGGGCTCAATGG 60.080 57.895 0.00 0.00 0.00 3.16
735 743 1.531739 GGCAAAACGGGCTCAATGGA 61.532 55.000 0.00 0.00 0.00 3.41
736 744 0.109132 GCAAAACGGGCTCAATGGAG 60.109 55.000 0.00 0.00 44.33 3.86
744 752 3.801997 CTCAATGGAGCCCGGCCT 61.802 66.667 5.55 0.00 33.67 5.19
745 753 3.764160 CTCAATGGAGCCCGGCCTC 62.764 68.421 3.19 3.19 33.67 4.70
746 754 3.801997 CAATGGAGCCCGGCCTCT 61.802 66.667 12.89 0.13 32.43 3.69
747 755 3.801997 AATGGAGCCCGGCCTCTG 61.802 66.667 12.89 0.00 32.43 3.35
949 962 3.179339 TTTCCCAGGCCGGACCAA 61.179 61.111 1.76 0.00 43.14 3.67
950 963 3.204467 TTTCCCAGGCCGGACCAAG 62.204 63.158 1.76 1.95 43.14 3.61
955 968 1.675641 CAGGCCGGACCAAGGAAAG 60.676 63.158 1.76 0.00 43.14 2.62
956 969 3.062466 GGCCGGACCAAGGAAAGC 61.062 66.667 5.05 0.00 38.86 3.51
957 970 2.282180 GCCGGACCAAGGAAAGCA 60.282 61.111 5.05 0.00 0.00 3.91
958 971 2.626780 GCCGGACCAAGGAAAGCAC 61.627 63.158 5.05 0.00 0.00 4.40
960 973 1.971695 CGGACCAAGGAAAGCACCC 60.972 63.158 0.00 0.00 0.00 4.61
961 974 1.152830 GGACCAAGGAAAGCACCCA 59.847 57.895 0.00 0.00 0.00 4.51
962 975 0.469144 GGACCAAGGAAAGCACCCAA 60.469 55.000 0.00 0.00 0.00 4.12
963 976 1.408969 GACCAAGGAAAGCACCCAAA 58.591 50.000 0.00 0.00 0.00 3.28
964 977 1.760029 GACCAAGGAAAGCACCCAAAA 59.240 47.619 0.00 0.00 0.00 2.44
965 978 1.762370 ACCAAGGAAAGCACCCAAAAG 59.238 47.619 0.00 0.00 0.00 2.27
974 987 2.282462 ACCCAAAAGCGCTCCCAG 60.282 61.111 12.06 1.03 0.00 4.45
1379 1424 3.688673 AGTGCAACCTCTACTAGTACGAC 59.311 47.826 0.00 0.00 37.80 4.34
1414 1459 2.354199 CCCTCTAACTCGTCTTACCGTC 59.646 54.545 0.00 0.00 0.00 4.79
1447 1493 1.154225 CGCGATTTGTCTGCCAACC 60.154 57.895 0.00 0.00 31.20 3.77
1496 1542 3.291611 CCAGGGATTTGTGCTGGC 58.708 61.111 0.00 0.00 0.00 4.85
1512 1558 2.556287 GCGTGGCGAGGTTTTGAG 59.444 61.111 0.00 0.00 0.00 3.02
1579 1625 1.444933 AGGGTCATCAGTGTTTCCCA 58.555 50.000 14.19 0.00 35.75 4.37
1592 1638 3.131046 GTGTTTCCCAGCAATGGAATAGG 59.869 47.826 2.90 0.00 41.36 2.57
1747 1799 5.233957 TGTGCATGTCAATTGTATACTGC 57.766 39.130 5.13 9.24 0.00 4.40
1855 1907 5.393068 TGGATATTTCTTGCTGGAATCCT 57.607 39.130 0.00 0.00 0.00 3.24
1882 1934 3.831333 TCTGTGAGATGAGAGCAAGACTT 59.169 43.478 0.00 0.00 0.00 3.01
1883 1935 4.282957 TCTGTGAGATGAGAGCAAGACTTT 59.717 41.667 0.00 0.00 0.00 2.66
1885 1937 6.015095 TCTGTGAGATGAGAGCAAGACTTTAA 60.015 38.462 0.00 0.00 0.00 1.52
1886 1938 6.705302 TGTGAGATGAGAGCAAGACTTTAAT 58.295 36.000 0.00 0.00 0.00 1.40
1914 1966 9.658799 TTTTTCACTTAAAACATGTGGAATTCA 57.341 25.926 7.93 0.00 36.79 2.57
1931 1983 6.039047 TGGAATTCAGATTCTAGATGCAAAGC 59.961 38.462 7.93 0.00 41.18 3.51
1933 1985 3.461061 TCAGATTCTAGATGCAAAGCGG 58.539 45.455 0.00 0.00 0.00 5.52
1974 2026 2.300152 CAACTTAGGTGAGCTGGTGAGA 59.700 50.000 0.00 0.00 0.00 3.27
1977 2029 2.532250 TAGGTGAGCTGGTGAGATGA 57.468 50.000 0.00 0.00 0.00 2.92
2025 2077 3.684408 ATTAACTACTCCCTCCGTCCT 57.316 47.619 0.00 0.00 0.00 3.85
2027 2079 4.591321 TTAACTACTCCCTCCGTCCTAA 57.409 45.455 0.00 0.00 0.00 2.69
2032 2084 5.522641 ACTACTCCCTCCGTCCTAAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
2033 2085 6.141790 ACTACTCCCTCCGTCCTAAAATAAT 58.858 40.000 0.00 0.00 0.00 1.28
2034 2086 5.970501 ACTCCCTCCGTCCTAAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
2036 2088 5.191124 ACTCCCTCCGTCCTAAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
2037 2089 5.677567 TCCCTCCGTCCTAAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
2038 2090 5.427481 TCCCTCCGTCCTAAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
2039 2091 5.758784 CCCTCCGTCCTAAAATAATTGTCTC 59.241 44.000 0.00 0.00 0.00 3.36
2040 2092 6.346096 CCTCCGTCCTAAAATAATTGTCTCA 58.654 40.000 0.00 0.00 0.00 3.27
2041 2093 6.821665 CCTCCGTCCTAAAATAATTGTCTCAA 59.178 38.462 0.00 0.00 0.00 3.02
2042 2094 7.011482 CCTCCGTCCTAAAATAATTGTCTCAAG 59.989 40.741 0.00 0.00 0.00 3.02
2043 2095 6.315393 TCCGTCCTAAAATAATTGTCTCAAGC 59.685 38.462 0.00 0.00 0.00 4.01
2045 2097 7.148239 CCGTCCTAAAATAATTGTCTCAAGCTT 60.148 37.037 0.00 0.00 0.00 3.74
2057 2109 9.683069 AATTGTCTCAAGCTTATTACAACTTTG 57.317 29.630 17.09 0.00 30.40 2.77
2059 2111 8.896320 TGTCTCAAGCTTATTACAACTTTGTA 57.104 30.769 0.00 0.00 42.35 2.41
2060 2112 8.770828 TGTCTCAAGCTTATTACAACTTTGTAC 58.229 33.333 0.00 0.00 42.84 2.90
2061 2113 8.989980 GTCTCAAGCTTATTACAACTTTGTACT 58.010 33.333 0.00 0.00 42.84 2.73
2066 2118 8.705048 AGCTTATTACAACTTTGTACTAGAGC 57.295 34.615 0.00 15.89 42.84 4.09
2067 2119 8.532819 AGCTTATTACAACTTTGTACTAGAGCT 58.467 33.333 18.01 18.01 42.84 4.09
2068 2120 9.798994 GCTTATTACAACTTTGTACTAGAGCTA 57.201 33.333 0.00 0.00 42.84 3.32
2072 2124 5.471257 ACAACTTTGTACTAGAGCTAGTGC 58.529 41.667 18.00 16.91 45.25 4.40
2080 2132 4.873746 ACTAGAGCTAGTGCAAAGTTGA 57.126 40.909 9.26 0.00 44.11 3.18
2081 2133 4.815269 ACTAGAGCTAGTGCAAAGTTGAG 58.185 43.478 9.26 0.00 44.11 3.02
2082 2134 4.524714 ACTAGAGCTAGTGCAAAGTTGAGA 59.475 41.667 9.26 0.00 44.11 3.27
2083 2135 3.658709 AGAGCTAGTGCAAAGTTGAGAC 58.341 45.455 0.00 0.00 42.74 3.36
2084 2136 3.070159 AGAGCTAGTGCAAAGTTGAGACA 59.930 43.478 0.00 0.00 42.74 3.41
2085 2137 3.134458 AGCTAGTGCAAAGTTGAGACAC 58.866 45.455 0.00 0.00 42.74 3.67
2086 2138 3.134458 GCTAGTGCAAAGTTGAGACACT 58.866 45.455 0.00 0.00 43.60 3.55
2091 2143 6.699575 AGTGCAAAGTTGAGACACTTATTT 57.300 33.333 0.00 0.00 38.38 1.40
2114 2166 1.479021 GGACGGAGGGAGTAGTATGCT 60.479 57.143 0.00 0.00 0.00 3.79
2158 2210 6.265196 TCATGAAGTTAGCATTGTGGAAGTTT 59.735 34.615 0.00 0.00 0.00 2.66
2177 2229 9.974980 GGAAGTTTATTTTGAAGACATGGTTTA 57.025 29.630 0.00 0.00 0.00 2.01
2198 2250 7.544217 GGTTTATATGGCTTCGTTTTTGTCATT 59.456 33.333 0.00 0.00 0.00 2.57
2200 2252 6.949578 ATATGGCTTCGTTTTTGTCATTTG 57.050 33.333 0.00 0.00 0.00 2.32
2252 2305 6.607600 TGATCTACAGCTACAGGACAAACTAT 59.392 38.462 0.00 0.00 0.00 2.12
2290 2343 7.230849 TGTTCATTCTTGGTAAGCAATGAAT 57.769 32.000 19.60 12.53 41.43 2.57
2338 2391 4.394610 GCTTTTTGGTTGGTTTTGACATGT 59.605 37.500 0.00 0.00 0.00 3.21
2340 2393 6.569418 GCTTTTTGGTTGGTTTTGACATGTTT 60.569 34.615 0.00 0.00 0.00 2.83
2422 2476 2.502142 TGACTGGATTCAGCATTGCT 57.498 45.000 5.03 5.03 44.59 3.91
2486 2639 3.004629 CCTTGCATTGTGCTTGTAACTCA 59.995 43.478 3.41 0.00 45.31 3.41
2490 2643 4.097741 TGCATTGTGCTTGTAACTCAGTTT 59.902 37.500 0.00 0.00 45.31 2.66
2593 2748 8.905103 ACATTCTTTGTAAATTACATTACGGC 57.095 30.769 6.67 0.00 38.37 5.68
2594 2749 8.516234 ACATTCTTTGTAAATTACATTACGGCA 58.484 29.630 6.67 0.00 38.37 5.69
2595 2750 9.515020 CATTCTTTGTAAATTACATTACGGCAT 57.485 29.630 6.67 0.00 38.37 4.40
2598 2753 9.991388 TCTTTGTAAATTACATTACGGCATTAC 57.009 29.630 6.67 0.00 38.37 1.89
2599 2754 9.776158 CTTTGTAAATTACATTACGGCATTACA 57.224 29.630 6.67 0.00 38.37 2.41
2718 2877 5.462398 GTGTAGCCATCATAACTTAGGTTCG 59.538 44.000 0.00 0.00 36.92 3.95
2800 2959 8.306038 TGGAAAATAGCATCATTATTATGTGCC 58.694 33.333 12.49 0.00 38.47 5.01
2921 3080 9.725019 AAGTGAATATGTAGTTTCTGACAATCA 57.275 29.630 0.00 0.00 0.00 2.57
3038 3198 5.357314 GGAACCTTAACAGCTTCCTAATTCC 59.643 44.000 0.00 0.00 31.11 3.01
3089 3249 4.823157 TGGAACAAATTGTACGCTAGCTA 58.177 39.130 13.93 1.43 31.92 3.32
3112 3272 8.292448 GCTACATGCTTGTTATTATGCTAACAT 58.708 33.333 10.85 0.00 40.34 2.71
3119 3279 9.398170 GCTTGTTATTATGCTAACATTGTATGG 57.602 33.333 0.00 0.00 40.34 2.74
3141 3302 1.470285 CGCTCCATTTTGGCCAATGAG 60.470 52.381 21.26 21.38 37.47 2.90
3167 3328 5.697178 CAGAGAGCACATCATTAGATTCCTG 59.303 44.000 0.00 0.00 30.20 3.86
3200 3381 3.000684 TGACCAGTCGCTGTACTAGAT 57.999 47.619 0.00 0.00 0.00 1.98
3284 3465 2.802816 GCGCAAGTTATTCCATCTCGAT 59.197 45.455 0.30 0.00 41.68 3.59
3357 3549 8.957466 GTTAGGAGTTAATTTAGCAAATCAGGT 58.043 33.333 0.00 0.00 0.00 4.00
3377 3570 6.038603 TCAGGTGCATGCTTTATCAAGTTATC 59.961 38.462 20.33 0.00 31.86 1.75
3396 3589 7.344134 AGTTATCTCCTTGTGTTATAAACCCC 58.656 38.462 0.00 0.00 0.00 4.95
3406 3599 7.690952 TGTGTTATAAACCCCATGTTACTTC 57.309 36.000 0.00 0.00 35.67 3.01
3452 3645 3.920231 ACTGCCAAGCATCTTAGATCA 57.080 42.857 0.00 0.00 38.13 2.92
3460 3653 5.163784 CCAAGCATCTTAGATCACAGTGTTG 60.164 44.000 0.00 0.00 0.00 3.33
3477 3671 0.970640 TTGCACGCACTAGTTAGGGA 59.029 50.000 0.00 0.00 0.00 4.20
3481 3675 1.480954 CACGCACTAGTTAGGGACCAT 59.519 52.381 0.00 0.00 0.00 3.55
3496 3690 4.599241 AGGGACCATCCATCCTAGTTATTG 59.401 45.833 0.00 0.00 38.64 1.90
3547 3741 2.261729 GGATTAGATCCTCAGGGGTCC 58.738 57.143 0.00 0.00 43.61 4.46
3548 3742 2.261729 GATTAGATCCTCAGGGGTCCC 58.738 57.143 0.00 0.00 43.61 4.46
3549 3743 5.389752 GGATTAGATCCTCAGGGGTCCCT 62.390 56.522 8.15 1.98 46.23 4.20
3550 3744 0.861155 TAGATCCTCAGGGGTCCCTC 59.139 60.000 8.15 0.00 46.28 4.30
3554 3748 0.563173 TCCTCAGGGGTCCCTCTATG 59.437 60.000 8.15 2.37 46.28 2.23
3582 3790 3.380637 GGGTGTGTACTCATCTATGACGT 59.619 47.826 8.03 0.00 32.50 4.34
3585 3794 3.311596 TGTGTACTCATCTATGACGTCCG 59.688 47.826 14.12 1.48 32.50 4.79
3587 3796 4.034858 GTGTACTCATCTATGACGTCCGAA 59.965 45.833 14.12 0.00 32.50 4.30
3590 3799 3.065510 ACTCATCTATGACGTCCGAACAG 59.934 47.826 14.12 9.18 32.50 3.16
3594 3803 4.611310 TCTATGACGTCCGAACAGTTAG 57.389 45.455 14.12 2.07 0.00 2.34
3596 3805 2.410785 TGACGTCCGAACAGTTAGTG 57.589 50.000 14.12 0.00 0.00 2.74
3643 3853 1.879575 CCTTCCCTACTCCCATCACA 58.120 55.000 0.00 0.00 0.00 3.58
3666 3876 2.370349 CCTCTTGTCTCTCGAGCCTAA 58.630 52.381 7.81 0.00 0.00 2.69
3693 3903 8.957466 TCTCATCTACCTTATGATATACAACCG 58.043 37.037 0.00 0.00 33.08 4.44
3820 4200 8.292448 GCATATAATTGTCACAAGTATGAAGGG 58.708 37.037 18.61 6.37 0.00 3.95
3875 4260 7.898636 AGGGTTATTTTTCCTTGTATCCATTCA 59.101 33.333 0.00 0.00 0.00 2.57
4342 4736 9.689075 GAAAAACTTGAACTAAGCATTTTTCAC 57.311 29.630 15.66 0.00 42.96 3.18
4382 4776 0.321919 TCTGGTTGACCTCATGCAGC 60.322 55.000 1.34 0.00 36.82 5.25
4403 4797 2.114616 CTCCTCACAGTTCTATGGGCT 58.885 52.381 0.00 0.00 0.00 5.19
4442 4836 5.633830 TTAGTAAGGACGGTGTAGAGTTG 57.366 43.478 0.00 0.00 0.00 3.16
4656 5050 4.112634 AGGTTCCTTCATGCCTGTTTAA 57.887 40.909 0.00 0.00 0.00 1.52
4657 5051 4.479158 AGGTTCCTTCATGCCTGTTTAAA 58.521 39.130 0.00 0.00 0.00 1.52
4661 5055 5.195001 TCCTTCATGCCTGTTTAAAACAC 57.805 39.130 0.00 0.00 36.25 3.32
4662 5056 4.646945 TCCTTCATGCCTGTTTAAAACACA 59.353 37.500 0.00 0.00 36.25 3.72
4669 5063 4.279671 TGCCTGTTTAAAACACACATAGGG 59.720 41.667 0.00 0.00 36.25 3.53
4858 5255 2.025699 AGGTGGACCTAGACTGACTCTC 60.026 54.545 0.00 0.00 46.48 3.20
4860 5257 3.013921 GTGGACCTAGACTGACTCTCTG 58.986 54.545 0.00 0.00 0.00 3.35
4906 5303 4.159879 CGGTCCTCCTAATCACAGTAGTTT 59.840 45.833 0.00 0.00 0.00 2.66
4907 5304 5.337330 CGGTCCTCCTAATCACAGTAGTTTT 60.337 44.000 0.00 0.00 0.00 2.43
4935 5334 5.431179 TTGGACTTCTCCCTATAACCAAC 57.569 43.478 0.00 0.00 35.34 3.77
5043 5442 5.595885 TGCTTCATGCTCTGTCTATACTTC 58.404 41.667 0.00 0.00 43.37 3.01
5044 5443 5.127682 TGCTTCATGCTCTGTCTATACTTCA 59.872 40.000 0.00 0.00 43.37 3.02
5157 5577 6.479972 TCCAGTGGATCTGTAATTCGTTAT 57.520 37.500 8.12 0.00 42.19 1.89
5180 5600 0.038526 CGGTTCTGTTAGCCGTCACT 60.039 55.000 0.00 0.00 46.06 3.41
5198 5618 2.668457 CACTGTGTATCTCAAAGGACGC 59.332 50.000 0.00 0.00 35.78 5.19
5200 5620 3.762288 ACTGTGTATCTCAAAGGACGCTA 59.238 43.478 0.00 0.00 35.78 4.26
5201 5621 4.219944 ACTGTGTATCTCAAAGGACGCTAA 59.780 41.667 0.00 0.00 35.78 3.09
5202 5622 4.744570 TGTGTATCTCAAAGGACGCTAAG 58.255 43.478 0.00 0.00 0.00 2.18
5203 5623 4.461431 TGTGTATCTCAAAGGACGCTAAGA 59.539 41.667 0.00 0.00 0.00 2.10
5204 5624 5.038033 GTGTATCTCAAAGGACGCTAAGAG 58.962 45.833 0.00 0.00 0.00 2.85
5205 5625 4.705507 TGTATCTCAAAGGACGCTAAGAGT 59.294 41.667 0.00 0.00 0.00 3.24
5206 5626 5.884232 TGTATCTCAAAGGACGCTAAGAGTA 59.116 40.000 0.00 0.00 0.00 2.59
5207 5627 6.546403 TGTATCTCAAAGGACGCTAAGAGTAT 59.454 38.462 0.00 0.00 0.00 2.12
5208 5628 5.502153 TCTCAAAGGACGCTAAGAGTATC 57.498 43.478 0.00 0.00 0.00 2.24
5209 5629 4.338682 TCTCAAAGGACGCTAAGAGTATCC 59.661 45.833 0.00 0.00 33.66 2.59
5210 5630 4.279145 TCAAAGGACGCTAAGAGTATCCT 58.721 43.478 0.00 0.00 41.70 3.24
5211 5631 5.443283 TCAAAGGACGCTAAGAGTATCCTA 58.557 41.667 0.00 0.00 38.90 2.94
5212 5632 5.531659 TCAAAGGACGCTAAGAGTATCCTAG 59.468 44.000 0.00 0.00 38.90 3.02
5213 5633 4.710313 AGGACGCTAAGAGTATCCTAGT 57.290 45.455 0.00 0.00 38.04 2.57
5214 5634 4.391155 AGGACGCTAAGAGTATCCTAGTG 58.609 47.826 0.00 0.00 38.04 2.74
5215 5635 3.058085 GGACGCTAAGAGTATCCTAGTGC 60.058 52.174 0.00 0.00 33.66 4.40
5216 5636 3.552875 ACGCTAAGAGTATCCTAGTGCA 58.447 45.455 0.00 0.00 33.66 4.57
5217 5637 3.566322 ACGCTAAGAGTATCCTAGTGCAG 59.434 47.826 0.00 0.00 33.66 4.41
5218 5638 3.566322 CGCTAAGAGTATCCTAGTGCAGT 59.434 47.826 0.00 0.00 33.66 4.40
5219 5639 4.036971 CGCTAAGAGTATCCTAGTGCAGTT 59.963 45.833 0.00 0.00 33.66 3.16
5220 5640 5.525199 GCTAAGAGTATCCTAGTGCAGTTC 58.475 45.833 0.00 0.00 33.66 3.01
5221 5641 5.067936 GCTAAGAGTATCCTAGTGCAGTTCA 59.932 44.000 0.00 0.00 33.66 3.18
5222 5642 6.405953 GCTAAGAGTATCCTAGTGCAGTTCAA 60.406 42.308 0.00 0.00 33.66 2.69
5223 5643 6.360370 AAGAGTATCCTAGTGCAGTTCAAA 57.640 37.500 0.00 0.00 33.66 2.69
5224 5644 6.360370 AGAGTATCCTAGTGCAGTTCAAAA 57.640 37.500 0.00 0.00 33.66 2.44
5225 5645 6.769512 AGAGTATCCTAGTGCAGTTCAAAAA 58.230 36.000 0.00 0.00 33.66 1.94
5279 5727 0.383231 GTACGCGTACATGCCCTAGT 59.617 55.000 37.28 3.29 36.15 2.57
5289 5737 5.699001 CGTACATGCCCTAGTTTGCAATATA 59.301 40.000 0.00 0.00 41.50 0.86
5300 5767 9.601217 CCTAGTTTGCAATATACCATATACTCC 57.399 37.037 0.00 0.00 0.00 3.85
5318 5785 9.941325 ATATACTCCTTCAGCTATTCATTTCAG 57.059 33.333 0.00 0.00 0.00 3.02
5330 5797 0.967380 CATTTCAGTCACTGGGCCCC 60.967 60.000 22.27 2.29 31.51 5.80
5331 5798 2.484287 ATTTCAGTCACTGGGCCCCG 62.484 60.000 22.27 17.16 31.51 5.73
5334 5801 3.175710 AGTCACTGGGCCCCGTTT 61.176 61.111 22.27 3.97 0.00 3.60
5336 5803 1.073548 GTCACTGGGCCCCGTTTAA 59.926 57.895 22.27 3.84 0.00 1.52
5337 5804 1.073548 TCACTGGGCCCCGTTTAAC 59.926 57.895 22.27 0.00 0.00 2.01
5339 5806 0.824182 CACTGGGCCCCGTTTAACAA 60.824 55.000 22.27 0.00 0.00 2.83
5340 5807 0.538746 ACTGGGCCCCGTTTAACAAG 60.539 55.000 22.27 9.09 0.00 3.16
5341 5808 1.873270 CTGGGCCCCGTTTAACAAGC 61.873 60.000 22.27 0.00 0.00 4.01
5342 5809 1.605451 GGGCCCCGTTTAACAAGCT 60.605 57.895 12.23 0.00 0.00 3.74
5343 5810 0.322726 GGGCCCCGTTTAACAAGCTA 60.323 55.000 12.23 0.00 0.00 3.32
5344 5811 1.092348 GGCCCCGTTTAACAAGCTAG 58.908 55.000 0.00 0.00 0.00 3.42
5347 5814 2.934553 GCCCCGTTTAACAAGCTAGTAG 59.065 50.000 0.00 0.00 0.00 2.57
5350 5817 4.809426 CCCCGTTTAACAAGCTAGTAGATG 59.191 45.833 0.00 1.64 0.00 2.90
5353 5820 4.868171 CGTTTAACAAGCTAGTAGATGCCA 59.132 41.667 0.00 0.00 0.00 4.92
5371 5846 3.261580 GCCAATGGCCACAGTAATTTTC 58.738 45.455 14.47 0.00 44.06 2.29
5372 5847 3.510719 CCAATGGCCACAGTAATTTTCG 58.489 45.455 8.16 0.00 0.00 3.46
5457 5943 2.754552 TGATTGAAATGGCCACAGTAGC 59.245 45.455 8.16 0.00 0.00 3.58
5497 6067 4.812091 AGCGTTAACTGACAAATACACACA 59.188 37.500 3.71 0.00 0.00 3.72
5501 6076 7.008447 GCGTTAACTGACAAATACACACAAAAA 59.992 33.333 3.71 0.00 0.00 1.94
5502 6077 9.015577 CGTTAACTGACAAATACACACAAAAAT 57.984 29.630 3.71 0.00 0.00 1.82
5540 6115 8.543293 ACATTTTGGGAACAGATATCATCATT 57.457 30.769 5.32 0.00 44.54 2.57
5616 6202 8.658499 TTCATGAGATGTGAAGAGTTCATATG 57.342 34.615 3.89 0.00 40.89 1.78
5779 6380 2.838202 TCCCAATGGTAGAACAGAGTCC 59.162 50.000 0.00 0.00 0.00 3.85
5799 6400 1.721489 CGCGTCAAAACTGAATGGTCG 60.721 52.381 0.00 0.00 0.00 4.79
5841 6442 1.852157 ACCAGCATCTCCCAACCCA 60.852 57.895 0.00 0.00 0.00 4.51
6015 6634 3.377346 ACTTCAGAATCGATCATCCCG 57.623 47.619 0.00 0.00 0.00 5.14
6039 6658 1.153489 CACATGGAGCCTGGAGACG 60.153 63.158 0.00 0.00 0.00 4.18
6040 6659 1.305297 ACATGGAGCCTGGAGACGA 60.305 57.895 0.00 0.00 0.00 4.20
6041 6660 1.142748 CATGGAGCCTGGAGACGAC 59.857 63.158 0.00 0.00 0.00 4.34
6073 6693 6.091441 CAGAGTAAACAACAGGAGCTTGATAC 59.909 42.308 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 0.609151 TCCCACGCGTAGGAAAATGA 59.391 50.000 24.35 10.87 0.00 2.57
58 59 1.805120 CGATCCCACGCGTAGGAAAAT 60.805 52.381 29.55 14.27 35.30 1.82
69 70 0.102300 TATGACTGTGCGATCCCACG 59.898 55.000 6.05 3.93 38.55 4.94
74 75 4.235939 ACATCTCTATGACTGTGCGATC 57.764 45.455 0.00 0.00 36.54 3.69
76 77 4.035675 CACTACATCTCTATGACTGTGCGA 59.964 45.833 0.00 0.00 36.54 5.10
77 78 4.286101 CACTACATCTCTATGACTGTGCG 58.714 47.826 0.00 0.00 36.54 5.34
83 84 6.531948 GTGAAACACCACTACATCTCTATGAC 59.468 42.308 0.00 0.00 35.08 3.06
85 86 6.893958 GTGAAACACCACTACATCTCTATG 57.106 41.667 0.00 0.00 36.46 2.23
132 133 9.296400 GTGTGCAAAAGAAAAACTGAATTAGTA 57.704 29.630 0.00 0.00 39.18 1.82
156 157 3.072211 AGTGACTGAAGCATCACATGTG 58.928 45.455 20.18 20.18 46.34 3.21
227 228 3.259064 TGCAACTCCAGTTTATAGACGC 58.741 45.455 0.00 0.00 35.83 5.19
234 235 5.391523 GCAAATACGATGCAACTCCAGTTTA 60.392 40.000 0.00 0.00 43.29 2.01
247 248 3.064682 TGTTTCCCGATGCAAATACGATG 59.935 43.478 0.00 0.00 0.00 3.84
249 250 2.701107 TGTTTCCCGATGCAAATACGA 58.299 42.857 0.00 0.00 0.00 3.43
261 262 4.223659 CTGACGGTTAAAATTGTTTCCCG 58.776 43.478 0.00 0.00 42.63 5.14
262 263 5.190992 ACTGACGGTTAAAATTGTTTCCC 57.809 39.130 0.00 0.00 0.00 3.97
263 264 6.752815 TGAAACTGACGGTTAAAATTGTTTCC 59.247 34.615 0.00 0.00 40.38 3.13
266 267 7.262048 ACATGAAACTGACGGTTAAAATTGTT 58.738 30.769 0.00 0.00 37.12 2.83
271 272 9.804758 AAAAATACATGAAACTGACGGTTAAAA 57.195 25.926 0.00 0.00 37.12 1.52
277 278 8.519492 AATTGAAAAATACATGAAACTGACGG 57.481 30.769 0.00 0.00 0.00 4.79
300 308 4.098914 TGGTCACTCTGGTGCTTAAAAT 57.901 40.909 0.00 0.00 42.72 1.82
319 327 1.064906 ACATCAGGCTGAACAGGATGG 60.065 52.381 22.84 6.31 43.62 3.51
324 332 4.687948 CCGATAATACATCAGGCTGAACAG 59.312 45.833 22.84 16.31 0.00 3.16
331 339 6.620733 GCAAATACACCGATAATACATCAGGC 60.621 42.308 0.00 0.00 0.00 4.85
333 341 6.128282 GGGCAAATACACCGATAATACATCAG 60.128 42.308 0.00 0.00 0.00 2.90
361 369 0.531974 TCGGTCTCTGCGTTGCTTTT 60.532 50.000 0.00 0.00 0.00 2.27
362 370 0.946221 CTCGGTCTCTGCGTTGCTTT 60.946 55.000 0.00 0.00 0.00 3.51
363 371 1.373497 CTCGGTCTCTGCGTTGCTT 60.373 57.895 0.00 0.00 0.00 3.91
364 372 2.259818 CTCGGTCTCTGCGTTGCT 59.740 61.111 0.00 0.00 0.00 3.91
365 373 3.482783 GCTCGGTCTCTGCGTTGC 61.483 66.667 0.00 0.00 0.00 4.17
366 374 1.803519 GAGCTCGGTCTCTGCGTTG 60.804 63.158 0.00 0.00 0.00 4.10
367 375 2.569134 GAGCTCGGTCTCTGCGTT 59.431 61.111 0.00 0.00 0.00 4.84
368 376 3.444805 GGAGCTCGGTCTCTGCGT 61.445 66.667 7.83 0.00 33.70 5.24
369 377 3.443925 TGGAGCTCGGTCTCTGCG 61.444 66.667 7.83 0.00 33.70 5.18
370 378 1.954362 ATGTGGAGCTCGGTCTCTGC 61.954 60.000 7.83 0.00 33.70 4.26
371 379 1.336440 CTATGTGGAGCTCGGTCTCTG 59.664 57.143 7.83 0.00 33.70 3.35
372 380 1.686355 CTATGTGGAGCTCGGTCTCT 58.314 55.000 7.83 0.00 33.70 3.10
373 381 0.031449 GCTATGTGGAGCTCGGTCTC 59.969 60.000 7.83 0.00 39.50 3.36
374 382 2.119886 GCTATGTGGAGCTCGGTCT 58.880 57.895 7.83 0.00 39.50 3.85
375 383 4.740235 GCTATGTGGAGCTCGGTC 57.260 61.111 7.83 1.06 39.50 4.79
398 406 8.353684 TGTGGAAATAGTATTTTCGCTGAAAAA 58.646 29.630 22.30 4.54 43.32 1.94
399 407 7.877003 TGTGGAAATAGTATTTTCGCTGAAAA 58.123 30.769 22.30 15.34 44.04 2.29
400 408 7.441890 TGTGGAAATAGTATTTTCGCTGAAA 57.558 32.000 22.30 5.42 36.63 2.69
401 409 7.624360 ATGTGGAAATAGTATTTTCGCTGAA 57.376 32.000 22.30 8.21 36.63 3.02
402 410 8.902540 ATATGTGGAAATAGTATTTTCGCTGA 57.097 30.769 22.30 13.54 36.63 4.26
403 411 9.385902 CAATATGTGGAAATAGTATTTTCGCTG 57.614 33.333 22.30 12.18 36.63 5.18
404 412 9.337396 TCAATATGTGGAAATAGTATTTTCGCT 57.663 29.630 22.30 13.39 36.63 4.93
405 413 9.944663 TTCAATATGTGGAAATAGTATTTTCGC 57.055 29.630 17.29 17.29 36.63 4.70
501 509 9.647797 TTTTTCGTATACACTACATGAGAACAT 57.352 29.630 0.00 0.00 37.19 2.71
502 510 9.135843 CTTTTTCGTATACACTACATGAGAACA 57.864 33.333 0.00 0.00 0.00 3.18
503 511 9.350357 TCTTTTTCGTATACACTACATGAGAAC 57.650 33.333 0.00 0.00 0.00 3.01
547 555 8.085909 GCCTAAAAACAACAAAGATAAAGCCTA 58.914 33.333 0.00 0.00 0.00 3.93
548 556 6.929049 GCCTAAAAACAACAAAGATAAAGCCT 59.071 34.615 0.00 0.00 0.00 4.58
549 557 6.147164 GGCCTAAAAACAACAAAGATAAAGCC 59.853 38.462 0.00 0.00 0.00 4.35
550 558 6.704050 TGGCCTAAAAACAACAAAGATAAAGC 59.296 34.615 3.32 0.00 0.00 3.51
551 559 8.141268 TCTGGCCTAAAAACAACAAAGATAAAG 58.859 33.333 3.32 0.00 0.00 1.85
552 560 8.012957 TCTGGCCTAAAAACAACAAAGATAAA 57.987 30.769 3.32 0.00 0.00 1.40
553 561 7.589958 TCTGGCCTAAAAACAACAAAGATAA 57.410 32.000 3.32 0.00 0.00 1.75
554 562 7.775053 ATCTGGCCTAAAAACAACAAAGATA 57.225 32.000 3.32 0.00 0.00 1.98
555 563 6.670695 ATCTGGCCTAAAAACAACAAAGAT 57.329 33.333 3.32 0.00 0.00 2.40
556 564 7.775053 ATATCTGGCCTAAAAACAACAAAGA 57.225 32.000 3.32 0.00 0.00 2.52
557 565 8.831715 AAATATCTGGCCTAAAAACAACAAAG 57.168 30.769 3.32 0.00 0.00 2.77
558 566 8.646900 AGAAATATCTGGCCTAAAAACAACAAA 58.353 29.630 3.32 0.00 33.59 2.83
559 567 8.189119 AGAAATATCTGGCCTAAAAACAACAA 57.811 30.769 3.32 0.00 33.59 2.83
560 568 7.669722 AGAGAAATATCTGGCCTAAAAACAACA 59.330 33.333 3.32 0.00 35.54 3.33
561 569 8.056407 AGAGAAATATCTGGCCTAAAAACAAC 57.944 34.615 3.32 0.00 35.54 3.32
562 570 8.650143 AAGAGAAATATCTGGCCTAAAAACAA 57.350 30.769 3.32 0.00 35.54 2.83
563 571 8.650143 AAAGAGAAATATCTGGCCTAAAAACA 57.350 30.769 3.32 0.00 35.54 2.83
564 572 9.929180 AAAAAGAGAAATATCTGGCCTAAAAAC 57.071 29.630 3.32 0.00 35.54 2.43
587 595 8.599055 TCAATTATTTGCATGCTACACAAAAA 57.401 26.923 20.33 9.35 36.90 1.94
588 596 8.599055 TTCAATTATTTGCATGCTACACAAAA 57.401 26.923 20.33 10.10 36.90 2.44
589 597 8.774890 ATTCAATTATTTGCATGCTACACAAA 57.225 26.923 20.33 10.86 37.66 2.83
590 598 8.774890 AATTCAATTATTTGCATGCTACACAA 57.225 26.923 20.33 6.98 32.61 3.33
591 599 9.299963 GTAATTCAATTATTTGCATGCTACACA 57.700 29.630 20.33 0.25 32.61 3.72
592 600 9.299963 TGTAATTCAATTATTTGCATGCTACAC 57.700 29.630 20.33 0.00 32.61 2.90
596 604 9.772973 ATCATGTAATTCAATTATTTGCATGCT 57.227 25.926 20.33 0.40 33.98 3.79
597 605 9.805966 CATCATGTAATTCAATTATTTGCATGC 57.194 29.630 11.82 11.82 33.98 4.06
616 624 9.349713 TCAAGTAGGTAAAAAGTTTCATCATGT 57.650 29.630 0.00 0.00 0.00 3.21
617 625 9.612620 GTCAAGTAGGTAAAAAGTTTCATCATG 57.387 33.333 0.00 0.00 0.00 3.07
618 626 8.504005 CGTCAAGTAGGTAAAAAGTTTCATCAT 58.496 33.333 0.00 0.00 0.00 2.45
619 627 7.711772 TCGTCAAGTAGGTAAAAAGTTTCATCA 59.288 33.333 0.00 0.00 0.00 3.07
620 628 8.080083 TCGTCAAGTAGGTAAAAAGTTTCATC 57.920 34.615 0.00 0.00 0.00 2.92
621 629 8.340443 GTTCGTCAAGTAGGTAAAAAGTTTCAT 58.660 33.333 0.00 0.00 0.00 2.57
622 630 7.333921 TGTTCGTCAAGTAGGTAAAAAGTTTCA 59.666 33.333 0.00 0.00 0.00 2.69
623 631 7.687445 TGTTCGTCAAGTAGGTAAAAAGTTTC 58.313 34.615 0.00 0.00 0.00 2.78
624 632 7.614124 TGTTCGTCAAGTAGGTAAAAAGTTT 57.386 32.000 0.00 0.00 0.00 2.66
625 633 7.636326 CATGTTCGTCAAGTAGGTAAAAAGTT 58.364 34.615 0.00 0.00 0.00 2.66
626 634 6.293244 GCATGTTCGTCAAGTAGGTAAAAAGT 60.293 38.462 0.00 0.00 0.00 2.66
627 635 6.077838 GCATGTTCGTCAAGTAGGTAAAAAG 58.922 40.000 0.00 0.00 0.00 2.27
628 636 5.527951 TGCATGTTCGTCAAGTAGGTAAAAA 59.472 36.000 0.00 0.00 0.00 1.94
629 637 5.057819 TGCATGTTCGTCAAGTAGGTAAAA 58.942 37.500 0.00 0.00 0.00 1.52
630 638 4.633175 TGCATGTTCGTCAAGTAGGTAAA 58.367 39.130 0.00 0.00 0.00 2.01
631 639 4.260139 TGCATGTTCGTCAAGTAGGTAA 57.740 40.909 0.00 0.00 0.00 2.85
632 640 3.945981 TGCATGTTCGTCAAGTAGGTA 57.054 42.857 0.00 0.00 0.00 3.08
633 641 2.831685 TGCATGTTCGTCAAGTAGGT 57.168 45.000 0.00 0.00 0.00 3.08
634 642 4.811024 ACATATGCATGTTCGTCAAGTAGG 59.189 41.667 10.16 0.00 42.98 3.18
635 643 5.973651 ACATATGCATGTTCGTCAAGTAG 57.026 39.130 10.16 0.00 42.98 2.57
636 644 8.334632 CAAATACATATGCATGTTCGTCAAGTA 58.665 33.333 10.16 0.00 42.98 2.24
637 645 6.925610 AATACATATGCATGTTCGTCAAGT 57.074 33.333 10.16 0.00 42.98 3.16
638 646 7.188834 ACAAATACATATGCATGTTCGTCAAG 58.811 34.615 10.16 0.00 42.98 3.02
639 647 7.082700 ACAAATACATATGCATGTTCGTCAA 57.917 32.000 10.16 0.00 42.98 3.18
640 648 6.676237 ACAAATACATATGCATGTTCGTCA 57.324 33.333 10.16 0.00 42.98 4.35
699 707 9.884465 CCGTTTTGCCAAAATAAAATGAAAATA 57.116 25.926 5.81 0.00 35.73 1.40
700 708 7.864882 CCCGTTTTGCCAAAATAAAATGAAAAT 59.135 29.630 5.81 0.00 35.73 1.82
701 709 7.196331 CCCGTTTTGCCAAAATAAAATGAAAA 58.804 30.769 5.81 0.00 35.73 2.29
702 710 6.729187 CCCGTTTTGCCAAAATAAAATGAAA 58.271 32.000 5.81 0.00 35.73 2.69
703 711 5.278022 GCCCGTTTTGCCAAAATAAAATGAA 60.278 36.000 5.81 0.00 35.73 2.57
704 712 4.214332 GCCCGTTTTGCCAAAATAAAATGA 59.786 37.500 5.81 0.00 35.73 2.57
705 713 4.215185 AGCCCGTTTTGCCAAAATAAAATG 59.785 37.500 5.81 0.00 34.28 2.32
706 714 4.393834 AGCCCGTTTTGCCAAAATAAAAT 58.606 34.783 5.81 0.00 32.22 1.82
707 715 3.809905 AGCCCGTTTTGCCAAAATAAAA 58.190 36.364 5.81 0.00 32.22 1.52
708 716 3.181465 TGAGCCCGTTTTGCCAAAATAAA 60.181 39.130 5.81 0.00 32.22 1.40
709 717 2.365617 TGAGCCCGTTTTGCCAAAATAA 59.634 40.909 5.81 0.00 32.22 1.40
710 718 1.964223 TGAGCCCGTTTTGCCAAAATA 59.036 42.857 5.81 0.00 32.22 1.40
711 719 0.755686 TGAGCCCGTTTTGCCAAAAT 59.244 45.000 5.81 0.00 32.22 1.82
712 720 0.537188 TTGAGCCCGTTTTGCCAAAA 59.463 45.000 0.00 0.00 0.00 2.44
713 721 0.755686 ATTGAGCCCGTTTTGCCAAA 59.244 45.000 0.00 0.00 0.00 3.28
714 722 0.033228 CATTGAGCCCGTTTTGCCAA 59.967 50.000 0.00 0.00 0.00 4.52
715 723 1.664873 CATTGAGCCCGTTTTGCCA 59.335 52.632 0.00 0.00 0.00 4.92
716 724 1.079888 CCATTGAGCCCGTTTTGCC 60.080 57.895 0.00 0.00 0.00 4.52
717 725 0.109132 CTCCATTGAGCCCGTTTTGC 60.109 55.000 0.00 0.00 0.00 3.68
727 735 3.764160 GAGGCCGGGCTCCATTGAG 62.764 68.421 40.54 0.00 41.84 3.02
728 736 3.797353 GAGGCCGGGCTCCATTGA 61.797 66.667 40.54 0.00 0.00 2.57
729 737 3.801997 AGAGGCCGGGCTCCATTG 61.802 66.667 44.31 0.00 0.00 2.82
730 738 3.801997 CAGAGGCCGGGCTCCATT 61.802 66.667 44.31 29.32 0.00 3.16
747 755 4.735132 TACAGAGTGCGGCGGTGC 62.735 66.667 9.78 0.00 0.00 5.01
748 756 1.019278 AAATACAGAGTGCGGCGGTG 61.019 55.000 9.78 0.00 0.00 4.94
749 757 1.019278 CAAATACAGAGTGCGGCGGT 61.019 55.000 9.78 0.00 0.00 5.68
750 758 1.715585 CAAATACAGAGTGCGGCGG 59.284 57.895 9.78 0.00 0.00 6.13
751 759 1.060937 GCAAATACAGAGTGCGGCG 59.939 57.895 0.51 0.51 0.00 6.46
752 760 1.026718 AGGCAAATACAGAGTGCGGC 61.027 55.000 0.00 0.00 39.22 6.53
753 761 1.009829 GAGGCAAATACAGAGTGCGG 58.990 55.000 0.00 0.00 39.22 5.69
754 762 1.929836 GAGAGGCAAATACAGAGTGCG 59.070 52.381 0.00 0.00 39.22 5.34
755 763 3.258971 AGAGAGGCAAATACAGAGTGC 57.741 47.619 0.00 0.00 37.55 4.40
756 764 6.566197 AAAAAGAGAGGCAAATACAGAGTG 57.434 37.500 0.00 0.00 0.00 3.51
837 850 9.683870 TTCTTTTCCCCTAATAAAAAGCGTATA 57.316 29.630 0.00 0.00 38.99 1.47
838 851 8.584063 TTCTTTTCCCCTAATAAAAAGCGTAT 57.416 30.769 0.00 0.00 38.99 3.06
839 852 7.999450 TTCTTTTCCCCTAATAAAAAGCGTA 57.001 32.000 0.00 0.00 38.99 4.42
840 853 6.904463 TTCTTTTCCCCTAATAAAAAGCGT 57.096 33.333 0.00 0.00 38.99 5.07
841 854 6.307077 CGTTTCTTTTCCCCTAATAAAAAGCG 59.693 38.462 0.00 0.00 38.99 4.68
842 855 7.372714 TCGTTTCTTTTCCCCTAATAAAAAGC 58.627 34.615 0.00 0.00 38.99 3.51
843 856 8.789762 TCTCGTTTCTTTTCCCCTAATAAAAAG 58.210 33.333 0.00 0.00 39.97 2.27
849 862 4.288887 AGGTCTCGTTTCTTTTCCCCTAAT 59.711 41.667 0.00 0.00 0.00 1.73
949 962 2.041153 CGCTTTTGGGTGCTTTCCT 58.959 52.632 0.00 0.00 0.00 3.36
950 963 1.664649 GCGCTTTTGGGTGCTTTCC 60.665 57.895 0.00 0.00 39.35 3.13
951 964 3.936653 GCGCTTTTGGGTGCTTTC 58.063 55.556 0.00 0.00 39.35 2.62
955 968 4.056125 GGGAGCGCTTTTGGGTGC 62.056 66.667 13.26 0.00 42.33 5.01
956 969 2.597217 TGGGAGCGCTTTTGGGTG 60.597 61.111 13.26 0.00 34.56 4.61
957 970 2.282462 CTGGGAGCGCTTTTGGGT 60.282 61.111 13.26 0.00 34.56 4.51
958 971 2.034066 TCTGGGAGCGCTTTTGGG 59.966 61.111 13.26 1.40 0.00 4.12
960 973 3.583383 CCTCTGGGAGCGCTTTTG 58.417 61.111 13.26 2.57 33.58 2.44
974 987 1.986575 GCAGAGATGCGTTTGCCCTC 61.987 60.000 0.93 0.00 41.78 4.30
1153 1195 4.675029 AAACCTGGCGGTCGGTCG 62.675 66.667 0.00 0.00 44.73 4.79
1154 1196 2.741211 GAAACCTGGCGGTCGGTC 60.741 66.667 0.00 0.00 44.73 4.79
1155 1197 4.675029 CGAAACCTGGCGGTCGGT 62.675 66.667 0.00 0.00 44.73 4.69
1430 1476 1.212751 GGGTTGGCAGACAAATCGC 59.787 57.895 0.00 0.00 41.58 4.58
1496 1542 1.569493 CACTCAAAACCTCGCCACG 59.431 57.895 0.00 0.00 0.00 4.94
1512 1558 2.187946 CAGATCCCGTGGAGCCAC 59.812 66.667 9.61 9.61 39.17 5.01
1579 1625 3.393687 TGTCCTACCCTATTCCATTGCT 58.606 45.455 0.00 0.00 0.00 3.91
1592 1638 1.202533 AGCACACGCATATGTCCTACC 60.203 52.381 4.29 0.00 42.27 3.18
1687 1739 7.306283 CGAATTCTCTATTCAAACCTCTTAGCG 60.306 40.741 3.52 0.00 42.34 4.26
1747 1799 3.786576 CACACTCTTAGCGACTAACATCG 59.213 47.826 0.00 0.00 45.09 3.84
1855 1907 3.102204 TGCTCTCATCTCACAGATCCAA 58.898 45.455 0.00 0.00 31.32 3.53
1914 1966 3.550437 ACCGCTTTGCATCTAGAATCT 57.450 42.857 0.00 0.00 0.00 2.40
1931 1983 5.416083 TGAATCGAGCCCATATTTATACCG 58.584 41.667 0.00 0.00 0.00 4.02
1933 1985 7.907214 AGTTGAATCGAGCCCATATTTATAC 57.093 36.000 0.00 0.00 0.00 1.47
2020 2072 7.308782 AGCTTGAGACAATTATTTTAGGACG 57.691 36.000 0.00 0.00 0.00 4.79
2032 2084 8.850156 ACAAAGTTGTAATAAGCTTGAGACAAT 58.150 29.630 18.78 7.09 40.16 2.71
2033 2085 8.220755 ACAAAGTTGTAATAAGCTTGAGACAA 57.779 30.769 9.86 12.74 40.16 3.18
2034 2086 7.801716 ACAAAGTTGTAATAAGCTTGAGACA 57.198 32.000 9.86 7.12 40.16 3.41
2040 2092 9.152595 GCTCTAGTACAAAGTTGTAATAAGCTT 57.847 33.333 21.87 3.48 44.46 3.74
2041 2093 8.532819 AGCTCTAGTACAAAGTTGTAATAAGCT 58.467 33.333 23.76 23.76 44.46 3.74
2042 2094 8.705048 AGCTCTAGTACAAAGTTGTAATAAGC 57.295 34.615 21.76 21.76 44.46 3.09
2047 2099 7.088905 GCACTAGCTCTAGTACAAAGTTGTAA 58.911 38.462 9.04 0.00 43.98 2.41
2048 2100 6.208007 TGCACTAGCTCTAGTACAAAGTTGTA 59.792 38.462 9.04 0.00 43.98 2.41
2049 2101 5.010719 TGCACTAGCTCTAGTACAAAGTTGT 59.989 40.000 9.04 1.75 43.98 3.32
2050 2102 5.470368 TGCACTAGCTCTAGTACAAAGTTG 58.530 41.667 9.04 0.00 43.98 3.16
2052 2104 5.723672 TTGCACTAGCTCTAGTACAAAGT 57.276 39.130 16.31 0.00 42.94 2.66
2056 2108 5.243060 TCAACTTTGCACTAGCTCTAGTACA 59.757 40.000 9.04 7.44 43.98 2.90
2057 2109 5.710984 TCAACTTTGCACTAGCTCTAGTAC 58.289 41.667 9.04 5.00 43.98 2.73
2059 2111 4.524714 TCTCAACTTTGCACTAGCTCTAGT 59.475 41.667 3.84 3.84 46.52 2.57
2060 2112 4.862018 GTCTCAACTTTGCACTAGCTCTAG 59.138 45.833 0.00 2.55 42.74 2.43
2061 2113 4.280929 TGTCTCAACTTTGCACTAGCTCTA 59.719 41.667 0.00 0.00 42.74 2.43
2063 2115 3.185391 GTGTCTCAACTTTGCACTAGCTC 59.815 47.826 0.00 0.00 42.74 4.09
2065 2117 3.134458 AGTGTCTCAACTTTGCACTAGC 58.866 45.455 0.00 0.00 38.46 3.42
2066 2118 7.426929 AATAAGTGTCTCAACTTTGCACTAG 57.573 36.000 0.00 0.00 40.77 2.57
2067 2119 7.801716 AAATAAGTGTCTCAACTTTGCACTA 57.198 32.000 0.00 0.00 40.77 2.74
2068 2120 6.699575 AAATAAGTGTCTCAACTTTGCACT 57.300 33.333 0.00 0.00 40.77 4.40
2069 2121 6.198966 CCAAAATAAGTGTCTCAACTTTGCAC 59.801 38.462 0.00 0.00 40.77 4.57
2071 2123 5.691754 CCCAAAATAAGTGTCTCAACTTTGC 59.308 40.000 0.00 0.00 40.77 3.68
2072 2124 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2073 2125 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2075 2127 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2076 2128 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2077 2129 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2078 2130 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2079 2131 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2080 2132 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2081 2133 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2082 2134 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2083 2135 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2084 2136 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2085 2137 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2086 2138 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2091 2143 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2158 2210 9.420118 AGCCATATAAACCATGTCTTCAAAATA 57.580 29.630 0.00 0.00 0.00 1.40
2177 2229 5.348451 GCAAATGACAAAAACGAAGCCATAT 59.652 36.000 0.00 0.00 0.00 1.78
2183 2235 5.516339 ACTTCAGCAAATGACAAAAACGAAG 59.484 36.000 0.00 0.00 37.77 3.79
2222 2275 5.105752 GTCCTGTAGCTGTAGATCAAACAG 58.894 45.833 18.92 18.92 45.80 3.16
2233 2286 5.865085 TGAAATAGTTTGTCCTGTAGCTGT 58.135 37.500 0.00 0.00 0.00 4.40
2252 2305 8.248253 CCAAGAATGAACATGATCAAGATGAAA 58.752 33.333 9.94 0.00 32.06 2.69
2316 2369 6.493449 AACATGTCAAAACCAACCAAAAAG 57.507 33.333 0.00 0.00 0.00 2.27
2338 2391 9.153479 CCCAACCCTTCATATATAAAATGGAAA 57.847 33.333 8.56 0.00 0.00 3.13
2340 2393 7.831955 ACCCAACCCTTCATATATAAAATGGA 58.168 34.615 8.56 0.00 0.00 3.41
2442 2496 9.871238 CAAGGAAAGCTATTAGTTAAGTACTCA 57.129 33.333 0.00 0.00 38.33 3.41
2512 2666 7.328277 TGGTAAAGAGCGCATTTAACATAAT 57.672 32.000 23.83 0.00 35.46 1.28
2592 2747 5.292101 GTGACTGAAGTCCATAGTGTAATGC 59.708 44.000 7.96 0.00 44.15 3.56
2593 2748 6.398095 TGTGACTGAAGTCCATAGTGTAATG 58.602 40.000 7.96 0.00 44.15 1.90
2594 2749 6.605471 TGTGACTGAAGTCCATAGTGTAAT 57.395 37.500 7.96 0.00 44.15 1.89
2595 2750 6.183360 TGTTGTGACTGAAGTCCATAGTGTAA 60.183 38.462 7.96 0.00 44.15 2.41
2596 2751 5.303333 TGTTGTGACTGAAGTCCATAGTGTA 59.697 40.000 7.96 0.00 44.15 2.90
2597 2752 4.100963 TGTTGTGACTGAAGTCCATAGTGT 59.899 41.667 7.96 0.00 44.15 3.55
2598 2753 4.631131 TGTTGTGACTGAAGTCCATAGTG 58.369 43.478 7.96 0.00 44.15 2.74
2599 2754 4.588951 TCTGTTGTGACTGAAGTCCATAGT 59.411 41.667 7.96 0.00 44.15 2.12
2663 2822 4.210537 GTGCACGTTTACGCAATCCTATAT 59.789 41.667 0.00 0.00 44.43 0.86
2669 2828 2.025544 TTGTGCACGTTTACGCAATC 57.974 45.000 13.13 0.00 44.43 2.67
2718 2877 2.353704 GCAAATTGTCCCTTTGGCTACC 60.354 50.000 0.00 0.00 34.81 3.18
2785 2944 5.142639 ACTTGCCAGGCACATAATAATGAT 58.857 37.500 15.89 0.00 38.71 2.45
2921 3080 6.766467 GCCGCCAAGTTTATTATAGCCTATAT 59.234 38.462 0.00 0.00 0.00 0.86
3038 3198 8.559536 GTCCTACATAAACAATGGTGTATGATG 58.440 37.037 16.20 8.38 44.68 3.07
3089 3249 8.469200 ACAATGTTAGCATAATAACAAGCATGT 58.531 29.630 3.66 0.00 45.91 3.21
3119 3279 2.242797 ATTGGCCAAAATGGAGCGCC 62.243 55.000 24.71 0.00 40.96 6.53
3141 3302 3.465742 TCTAATGATGTGCTCTCTGGC 57.534 47.619 0.00 0.00 0.00 4.85
3188 3349 7.649973 AGGTAACATTTAGATCTAGTACAGCG 58.350 38.462 2.02 0.00 41.41 5.18
3265 3446 5.741388 AACATCGAGATGGAATAACTTGC 57.259 39.130 16.37 0.00 42.91 4.01
3357 3549 6.359804 AGGAGATAACTTGATAAAGCATGCA 58.640 36.000 21.98 0.00 0.00 3.96
3377 3570 5.261216 ACATGGGGTTTATAACACAAGGAG 58.739 41.667 0.00 0.00 36.19 3.69
3460 3653 0.459759 GGTCCCTAACTAGTGCGTGC 60.460 60.000 0.00 0.00 0.00 5.34
3477 3671 6.575244 TGAACAATAACTAGGATGGATGGT 57.425 37.500 0.00 0.00 0.00 3.55
3549 3743 4.263771 TGAGTACACACCCTCTCACATAGA 60.264 45.833 0.00 0.00 32.95 1.98
3550 3744 4.017126 TGAGTACACACCCTCTCACATAG 58.983 47.826 0.00 0.00 32.95 2.23
3554 3748 3.093057 AGATGAGTACACACCCTCTCAC 58.907 50.000 0.00 0.00 39.27 3.51
3582 3790 4.583489 AGACTTCTTCACTAACTGTTCGGA 59.417 41.667 0.00 0.00 0.00 4.55
3585 3794 7.492994 AGAACAAGACTTCTTCACTAACTGTTC 59.507 37.037 6.06 0.00 33.11 3.18
3587 3796 6.879400 AGAACAAGACTTCTTCACTAACTGT 58.121 36.000 6.06 0.00 33.11 3.55
3594 3803 9.657121 CAAGAAATTAGAACAAGACTTCTTCAC 57.343 33.333 6.06 0.00 33.11 3.18
3596 3805 8.563732 AGCAAGAAATTAGAACAAGACTTCTTC 58.436 33.333 0.00 0.00 33.11 2.87
3643 3853 1.398692 GCTCGAGAGACAAGAGGGAT 58.601 55.000 18.75 0.00 35.39 3.85
3689 3899 0.888736 TGCTGCTGCATGTAACGGTT 60.889 50.000 14.93 0.00 45.31 4.44
3746 3956 1.807142 GCTGTAGAACCCAAGTTGCTC 59.193 52.381 0.00 0.00 35.94 4.26
3870 4255 8.252417 TGATTTAAGAACCATGAACCATGAATG 58.748 33.333 8.38 0.00 43.81 2.67
3928 4313 8.462016 ACCATTCAAACACTTGCTAAATCTATC 58.538 33.333 0.00 0.00 32.14 2.08
3931 4316 6.265196 TCACCATTCAAACACTTGCTAAATCT 59.735 34.615 0.00 0.00 32.14 2.40
3938 4323 7.656707 AATTAATCACCATTCAAACACTTGC 57.343 32.000 0.00 0.00 32.14 4.01
4382 4776 1.139853 GCCCATAGAACTGTGAGGAGG 59.860 57.143 0.34 0.00 0.00 4.30
4403 4797 4.815533 ACTAAGCAGAGCAATGAGAAGA 57.184 40.909 0.00 0.00 0.00 2.87
4656 5050 6.152154 GGTATAAAACAGCCCTATGTGTGTTT 59.848 38.462 0.00 0.00 43.30 2.83
4657 5051 5.650703 GGTATAAAACAGCCCTATGTGTGTT 59.349 40.000 0.00 0.00 34.60 3.32
4661 5055 6.767524 TTTGGTATAAAACAGCCCTATGTG 57.232 37.500 0.00 0.00 32.52 3.21
4662 5056 6.153851 GGTTTTGGTATAAAACAGCCCTATGT 59.846 38.462 14.78 0.00 40.78 2.29
4669 5063 6.203723 TGCAAATGGTTTTGGTATAAAACAGC 59.796 34.615 14.78 10.88 42.09 4.40
4846 5243 3.625853 CATCACCCAGAGAGTCAGTCTA 58.374 50.000 0.00 0.00 34.71 2.59
4847 5244 2.455557 CATCACCCAGAGAGTCAGTCT 58.544 52.381 0.00 0.00 38.71 3.24
4884 5281 5.678955 AAACTACTGTGATTAGGAGGACC 57.321 43.478 0.00 0.00 32.64 4.46
4906 5303 5.860648 ATAGGGAGAAGTCCAAAGGAAAA 57.139 39.130 0.00 0.00 46.07 2.29
4907 5304 6.296836 GGTTATAGGGAGAAGTCCAAAGGAAA 60.297 42.308 0.00 0.00 46.07 3.13
4935 5334 0.519077 GCTGTTCTTCCTCCAAAGCG 59.481 55.000 0.00 0.00 0.00 4.68
4981 5380 8.798859 ACAACATATGCTTTTTGTCTAGATCT 57.201 30.769 1.58 0.00 0.00 2.75
5055 5454 6.401153 CGAAGCTTAGCGGAAAATATATCCAC 60.401 42.308 0.00 0.00 36.74 4.02
5066 5465 2.864343 GCTAAATCGAAGCTTAGCGGAA 59.136 45.455 16.65 0.00 38.30 4.30
5145 5565 8.706492 AACAGAACCGATTATAACGAATTACA 57.294 30.769 8.43 0.00 0.00 2.41
5180 5600 4.461431 TCTTAGCGTCCTTTGAGATACACA 59.539 41.667 0.00 0.00 0.00 3.72
5228 5648 7.907389 TGACATGTCACTAGGATACTCTTTTT 58.093 34.615 24.56 0.00 40.90 1.94
5229 5649 7.482169 TGACATGTCACTAGGATACTCTTTT 57.518 36.000 24.56 0.00 40.90 2.27
5230 5650 7.667575 ATGACATGTCACTAGGATACTCTTT 57.332 36.000 30.09 6.84 43.74 2.52
5279 5727 9.725019 CTGAAGGAGTATATGGTATATTGCAAA 57.275 33.333 1.71 0.00 0.00 3.68
5289 5737 7.805083 ATGAATAGCTGAAGGAGTATATGGT 57.195 36.000 0.00 0.00 0.00 3.55
5300 5767 6.183360 CCAGTGACTGAAATGAATAGCTGAAG 60.183 42.308 15.33 0.00 32.44 3.02
5302 5769 5.181009 CCAGTGACTGAAATGAATAGCTGA 58.819 41.667 15.33 0.00 32.44 4.26
5318 5785 1.073548 TTAAACGGGGCCCAGTGAC 59.926 57.895 29.35 6.62 0.00 3.67
5330 5797 4.868171 TGGCATCTACTAGCTTGTTAAACG 59.132 41.667 6.03 0.00 0.00 3.60
5331 5798 6.737254 TTGGCATCTACTAGCTTGTTAAAC 57.263 37.500 6.03 0.00 0.00 2.01
5334 5801 5.368145 CCATTGGCATCTACTAGCTTGTTA 58.632 41.667 6.03 0.00 0.00 2.41
5336 5803 3.813443 CCATTGGCATCTACTAGCTTGT 58.187 45.455 6.00 6.00 0.00 3.16
5353 5820 2.560542 TGCGAAAATTACTGTGGCCATT 59.439 40.909 9.72 0.00 0.00 3.16
5371 5846 1.526575 AATGGCTGTTTGGAGGTGCG 61.527 55.000 0.00 0.00 0.00 5.34
5372 5847 0.244721 GAATGGCTGTTTGGAGGTGC 59.755 55.000 0.00 0.00 0.00 5.01
5502 6077 9.527157 TGTTCCCAAAATGTCTTTCAGAATATA 57.473 29.630 0.00 0.00 0.00 0.86
5503 6078 8.421249 TGTTCCCAAAATGTCTTTCAGAATAT 57.579 30.769 0.00 0.00 0.00 1.28
5504 6079 7.723616 TCTGTTCCCAAAATGTCTTTCAGAATA 59.276 33.333 0.00 0.00 0.00 1.75
5505 6080 6.550854 TCTGTTCCCAAAATGTCTTTCAGAAT 59.449 34.615 0.00 0.00 0.00 2.40
5506 6081 5.890985 TCTGTTCCCAAAATGTCTTTCAGAA 59.109 36.000 0.00 0.00 0.00 3.02
5585 6166 7.840342 ACTCTTCACATCTCATGAATAACAC 57.160 36.000 0.00 0.00 35.57 3.32
5590 6171 9.274206 CATATGAACTCTTCACATCTCATGAAT 57.726 33.333 0.00 0.00 43.48 2.57
5600 6181 9.500785 TGTATTGAAACATATGAACTCTTCACA 57.499 29.630 10.38 1.95 43.48 3.58
5604 6185 9.295825 TGGTTGTATTGAAACATATGAACTCTT 57.704 29.630 10.38 0.00 0.00 2.85
5616 6202 9.482627 TCCATTTTTGTATGGTTGTATTGAAAC 57.517 29.630 0.00 0.00 44.48 2.78
5779 6380 1.721489 CGACCATTCAGTTTTGACGCG 60.721 52.381 3.53 3.53 31.71 6.01
6015 6634 1.815421 CAGGCTCCATGTGTACGCC 60.815 63.158 3.51 0.46 40.99 5.68
6039 6658 5.007724 CCTGTTGTTTACTCTGTTTCTGGTC 59.992 44.000 0.00 0.00 0.00 4.02
6040 6659 4.881850 CCTGTTGTTTACTCTGTTTCTGGT 59.118 41.667 0.00 0.00 0.00 4.00
6041 6660 5.123227 TCCTGTTGTTTACTCTGTTTCTGG 58.877 41.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.