Multiple sequence alignment - TraesCS1D01G280500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G280500 chr1D 100.000 3615 0 0 1 3615 378873810 378870196 0.000000e+00 6676.0
1 TraesCS1D01G280500 chr1D 87.616 323 28 4 3304 3614 41449879 41449557 7.380000e-97 364.0
2 TraesCS1D01G280500 chr1D 92.075 265 11 3 1179 1442 405003982 405003727 7.380000e-97 364.0
3 TraesCS1D01G280500 chr1A 93.863 2151 81 17 538 2645 479713885 479711743 0.000000e+00 3193.0
4 TraesCS1D01G280500 chr1A 87.662 308 28 9 16 313 479716900 479716593 2.070000e-92 350.0
5 TraesCS1D01G280500 chr1A 90.909 264 14 3 1180 1442 278371688 278371942 2.670000e-91 346.0
6 TraesCS1D01G280500 chr1A 90.741 162 15 0 308 469 441844211 441844372 2.190000e-52 217.0
7 TraesCS1D01G280500 chr1B 92.971 2205 83 28 545 2727 507546243 507544089 0.000000e+00 3147.0
8 TraesCS1D01G280500 chr1B 77.839 361 44 21 3281 3614 405529257 405528906 1.320000e-44 191.0
9 TraesCS1D01G280500 chr1B 80.932 236 18 5 2280 2510 90190644 90190857 1.040000e-35 161.0
10 TraesCS1D01G280500 chr1B 91.346 104 8 1 2751 2854 405528804 405528906 1.350000e-29 141.0
11 TraesCS1D01G280500 chr1B 90.909 66 5 1 1840 1905 90190547 90190611 1.790000e-13 87.9
12 TraesCS1D01G280500 chr4D 86.820 478 43 12 2941 3410 4064289 4063824 1.920000e-142 516.0
13 TraesCS1D01G280500 chr4D 85.714 490 47 14 2941 3422 4061845 4061371 2.510000e-136 496.0
14 TraesCS1D01G280500 chr4D 85.421 487 51 14 2944 3422 4054283 4053809 4.200000e-134 488.0
15 TraesCS1D01G280500 chr4D 85.569 492 41 19 2941 3424 4056861 4056392 4.200000e-134 488.0
16 TraesCS1D01G280500 chr4D 85.163 492 42 13 2941 3425 3874585 3874118 3.270000e-130 475.0
17 TraesCS1D01G280500 chr4D 86.628 344 35 6 3282 3614 4061377 4061034 1.590000e-98 370.0
18 TraesCS1D01G280500 chr4D 82.587 402 46 14 3224 3614 4063838 4063450 2.080000e-87 333.0
19 TraesCS1D01G280500 chr4D 87.333 150 17 2 314 463 447993255 447993402 1.730000e-38 171.0
20 TraesCS1D01G280500 chr4D 80.087 231 24 9 2283 2508 191275368 191275155 6.250000e-33 152.0
21 TraesCS1D01G280500 chr4D 85.256 156 10 6 2751 2895 3874742 3874589 8.090000e-32 148.0
22 TraesCS1D01G280500 chr4D 92.188 64 4 1 1840 1903 191275457 191275395 4.970000e-14 89.8
23 TraesCS1D01G280500 chr3D 85.944 498 50 11 2941 3428 442500939 442501426 6.920000e-142 514.0
24 TraesCS1D01G280500 chr3D 85.549 346 34 9 3284 3614 442501387 442501731 7.430000e-92 348.0
25 TraesCS1D01G280500 chr3D 89.404 151 10 4 317 463 298592269 298592121 6.160000e-43 185.0
26 TraesCS1D01G280500 chr3D 86.538 156 8 7 2751 2895 442500782 442500935 3.740000e-35 159.0
27 TraesCS1D01G280500 chr3D 92.593 108 6 2 2747 2854 442501836 442501731 1.740000e-33 154.0
28 TraesCS1D01G280500 chr5D 85.944 498 49 12 2941 3428 60161272 60160786 2.490000e-141 512.0
29 TraesCS1D01G280500 chr5D 87.574 338 29 6 3290 3614 60160819 60160482 2.630000e-101 379.0
30 TraesCS1D01G280500 chr5D 90.141 142 14 0 318 459 439222392 439222533 6.160000e-43 185.0
31 TraesCS1D01G280500 chr5D 86.538 156 8 7 2751 2895 60160380 60160533 3.740000e-35 159.0
32 TraesCS1D01G280500 chr5D 85.897 156 9 7 2751 2895 60161429 60161276 1.740000e-33 154.0
33 TraesCS1D01G280500 chr5D 90.588 85 3 2 2672 2751 388104151 388104067 1.370000e-19 108.0
34 TraesCS1D01G280500 chr7A 85.513 497 50 15 2941 3428 578566336 578566819 1.940000e-137 499.0
35 TraesCS1D01G280500 chr7A 82.920 363 41 9 3269 3614 578566740 578567098 1.260000e-79 307.0
36 TraesCS1D01G280500 chrUn 92.308 325 17 4 2941 3263 10147211 10146893 4.250000e-124 455.0
37 TraesCS1D01G280500 chrUn 87.307 323 29 4 3304 3614 10146353 10146031 3.430000e-95 359.0
38 TraesCS1D01G280500 chrUn 89.865 148 13 2 317 463 30041856 30041710 4.760000e-44 189.0
39 TraesCS1D01G280500 chrUn 91.346 104 8 1 2751 2854 10145929 10146031 1.350000e-29 141.0
40 TraesCS1D01G280500 chrUn 81.095 201 17 4 2283 2478 478995512 478995328 1.350000e-29 141.0
41 TraesCS1D01G280500 chr5B 86.226 363 44 6 1515 1873 436748279 436748639 4.380000e-104 388.0
42 TraesCS1D01G280500 chr5B 88.435 147 15 2 318 463 614458090 614458235 3.710000e-40 176.0
43 TraesCS1D01G280500 chr5B 91.463 82 3 1 2674 2751 466781521 466781440 3.820000e-20 110.0
44 TraesCS1D01G280500 chr2D 84.973 366 49 6 1515 1876 191052819 191053182 2.050000e-97 366.0
45 TraesCS1D01G280500 chr2D 87.333 300 26 4 3327 3614 15511837 15511538 2.080000e-87 333.0
46 TraesCS1D01G280500 chr2D 80.508 236 19 6 2280 2510 66562062 66562275 4.830000e-34 156.0
47 TraesCS1D01G280500 chr4B 90.980 255 14 2 1188 1442 616747501 616747256 5.780000e-88 335.0
48 TraesCS1D01G280500 chr6A 88.435 147 16 1 317 463 594460296 594460441 3.710000e-40 176.0
49 TraesCS1D01G280500 chr6A 93.396 106 6 1 2749 2854 32693034 32692930 4.830000e-34 156.0
50 TraesCS1D01G280500 chr7B 87.838 148 17 1 317 464 103559338 103559192 4.800000e-39 172.0
51 TraesCS1D01G280500 chr7B 91.346 104 8 1 2751 2854 589733982 589734084 1.350000e-29 141.0
52 TraesCS1D01G280500 chr7D 87.671 146 17 1 318 463 562639900 562640044 6.210000e-38 169.0
53 TraesCS1D01G280500 chr7D 79.661 236 26 10 2280 2510 98775961 98776179 2.250000e-32 150.0
54 TraesCS1D01G280500 chr7D 92.188 64 4 1 1840 1903 98775875 98775937 4.970000e-14 89.8
55 TraesCS1D01G280500 chr5A 81.373 204 17 5 2280 2478 440189177 440189364 2.910000e-31 147.0
56 TraesCS1D01G280500 chr5A 92.593 81 2 1 2675 2751 491296075 491295995 2.950000e-21 113.0
57 TraesCS1D01G280500 chr2B 80.882 204 18 4 2280 2478 447731852 447732039 1.350000e-29 141.0
58 TraesCS1D01G280500 chr3A 84.298 121 17 2 3495 3614 186051823 186051704 2.280000e-22 117.0
59 TraesCS1D01G280500 chr3A 92.188 64 4 1 1840 1903 1738053 1737991 4.970000e-14 89.8
60 TraesCS1D01G280500 chr6D 90.625 64 5 1 1840 1903 450191530 450191592 2.310000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G280500 chr1D 378870196 378873810 3614 True 6676.000000 6676 100.000000 1 3615 1 chr1D.!!$R2 3614
1 TraesCS1D01G280500 chr1A 479711743 479716900 5157 True 1771.500000 3193 90.762500 16 2645 2 chr1A.!!$R1 2629
2 TraesCS1D01G280500 chr1B 507544089 507546243 2154 True 3147.000000 3147 92.971000 545 2727 1 chr1B.!!$R2 2182
3 TraesCS1D01G280500 chr4D 4053809 4056861 3052 True 488.000000 488 85.495000 2941 3424 2 chr4D.!!$R2 483
4 TraesCS1D01G280500 chr4D 4061034 4064289 3255 True 428.750000 516 85.437250 2941 3614 4 chr4D.!!$R3 673
5 TraesCS1D01G280500 chr4D 3874118 3874742 624 True 311.500000 475 85.209500 2751 3425 2 chr4D.!!$R1 674
6 TraesCS1D01G280500 chr3D 442500782 442501731 949 False 340.333333 514 86.010333 2751 3614 3 chr3D.!!$F1 863
7 TraesCS1D01G280500 chr5D 60160482 60161429 947 True 348.333333 512 86.471667 2751 3614 3 chr5D.!!$R2 863
8 TraesCS1D01G280500 chr7A 578566336 578567098 762 False 403.000000 499 84.216500 2941 3614 2 chr7A.!!$F1 673
9 TraesCS1D01G280500 chrUn 10146031 10147211 1180 True 407.000000 455 89.807500 2941 3614 2 chrUn.!!$R3 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 3656 0.037326 CTGCTCTCTACAAACCCGCA 60.037 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2668 5373 0.03582 TCGCGATAAAAAGGCACCCT 60.036 50.0 3.71 0.0 33.87 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 79 9.535878 AAAAATAGTGAAAGCCGTAAATGAAAA 57.464 25.926 0.00 0.00 0.00 2.29
67 83 5.038033 GTGAAAGCCGTAAATGAAAACACA 58.962 37.500 0.00 0.00 0.00 3.72
83 99 7.795859 TGAAAACACAGCAAAAGAAAGAAAAG 58.204 30.769 0.00 0.00 0.00 2.27
111 129 6.419484 AAAATAGTAAAAGCCAAGCCAGTT 57.581 33.333 0.00 0.00 0.00 3.16
193 211 0.250166 AACGCGCTAACCAGAAACCT 60.250 50.000 5.73 0.00 0.00 3.50
194 212 0.949105 ACGCGCTAACCAGAAACCTG 60.949 55.000 5.73 0.00 0.00 4.00
215 234 0.978667 TTGCTAGGCCGACCCATACA 60.979 55.000 0.00 0.00 36.11 2.29
219 238 0.615261 TAGGCCGACCCATACACACA 60.615 55.000 0.00 0.00 36.11 3.72
220 239 1.003112 GGCCGACCCATACACACAA 60.003 57.895 0.00 0.00 0.00 3.33
229 248 2.549134 CCCATACACACAAACCAGTCGA 60.549 50.000 0.00 0.00 0.00 4.20
235 254 4.448210 ACACACAAACCAGTCGATTTAGT 58.552 39.130 0.00 0.00 0.00 2.24
236 255 4.272504 ACACACAAACCAGTCGATTTAGTG 59.727 41.667 10.18 10.18 33.05 2.74
249 268 7.758076 CAGTCGATTTAGTGACCACAGTATTTA 59.242 37.037 2.78 0.00 35.71 1.40
259 278 6.823689 GTGACCACAGTATTTAAGATGGATGT 59.176 38.462 0.00 0.00 0.00 3.06
260 279 7.985184 GTGACCACAGTATTTAAGATGGATGTA 59.015 37.037 0.00 0.00 0.00 2.29
261 280 8.544622 TGACCACAGTATTTAAGATGGATGTAA 58.455 33.333 0.00 0.00 0.00 2.41
307 328 5.305386 CACATGATGATTGGTACTCCCTCTA 59.695 44.000 0.00 0.00 0.00 2.43
313 334 8.429641 TGATGATTGGTACTCCCTCTATAAAAC 58.570 37.037 0.00 0.00 0.00 2.43
314 335 7.743116 TGATTGGTACTCCCTCTATAAAACA 57.257 36.000 0.00 0.00 0.00 2.83
315 336 8.331931 TGATTGGTACTCCCTCTATAAAACAT 57.668 34.615 0.00 0.00 0.00 2.71
316 337 8.778059 TGATTGGTACTCCCTCTATAAAACATT 58.222 33.333 0.00 0.00 0.00 2.71
317 338 9.274206 GATTGGTACTCCCTCTATAAAACATTC 57.726 37.037 0.00 0.00 0.00 2.67
318 339 6.812998 TGGTACTCCCTCTATAAAACATTCG 58.187 40.000 0.00 0.00 0.00 3.34
319 340 6.608405 TGGTACTCCCTCTATAAAACATTCGA 59.392 38.462 0.00 0.00 0.00 3.71
320 341 7.124599 TGGTACTCCCTCTATAAAACATTCGAA 59.875 37.037 0.00 0.00 0.00 3.71
321 342 7.983484 GGTACTCCCTCTATAAAACATTCGAAA 59.017 37.037 0.00 0.00 0.00 3.46
322 343 7.845066 ACTCCCTCTATAAAACATTCGAAAC 57.155 36.000 0.00 0.00 0.00 2.78
323 344 7.621796 ACTCCCTCTATAAAACATTCGAAACT 58.378 34.615 0.00 0.00 0.00 2.66
324 345 7.549488 ACTCCCTCTATAAAACATTCGAAACTG 59.451 37.037 0.00 0.00 0.00 3.16
325 346 6.315393 TCCCTCTATAAAACATTCGAAACTGC 59.685 38.462 0.00 0.00 0.00 4.40
326 347 6.458342 CCCTCTATAAAACATTCGAAACTGCC 60.458 42.308 0.00 0.00 0.00 4.85
327 348 6.316390 CCTCTATAAAACATTCGAAACTGCCT 59.684 38.462 0.00 0.00 0.00 4.75
328 349 7.494625 CCTCTATAAAACATTCGAAACTGCCTA 59.505 37.037 0.00 0.00 0.00 3.93
329 350 8.420374 TCTATAAAACATTCGAAACTGCCTAG 57.580 34.615 0.00 0.00 0.00 3.02
330 351 3.831715 AAACATTCGAAACTGCCTAGC 57.168 42.857 0.00 0.00 0.00 3.42
331 352 1.359848 ACATTCGAAACTGCCTAGCG 58.640 50.000 0.00 0.00 0.00 4.26
332 353 1.337823 ACATTCGAAACTGCCTAGCGT 60.338 47.619 0.00 0.00 0.00 5.07
333 354 2.094390 ACATTCGAAACTGCCTAGCGTA 60.094 45.455 0.00 0.00 0.00 4.42
334 355 1.986698 TTCGAAACTGCCTAGCGTAC 58.013 50.000 0.00 0.00 0.00 3.67
335 356 0.179181 TCGAAACTGCCTAGCGTACG 60.179 55.000 11.84 11.84 0.00 3.67
336 357 0.179181 CGAAACTGCCTAGCGTACGA 60.179 55.000 21.65 0.00 0.00 3.43
337 358 1.533338 CGAAACTGCCTAGCGTACGAT 60.533 52.381 21.65 16.90 0.00 3.73
338 359 1.852895 GAAACTGCCTAGCGTACGATG 59.147 52.381 21.65 7.72 0.00 3.84
339 360 1.100510 AACTGCCTAGCGTACGATGA 58.899 50.000 21.65 1.38 0.00 2.92
340 361 1.319541 ACTGCCTAGCGTACGATGAT 58.680 50.000 21.65 3.63 0.00 2.45
341 362 1.681793 ACTGCCTAGCGTACGATGATT 59.318 47.619 21.65 0.65 0.00 2.57
342 363 2.100916 ACTGCCTAGCGTACGATGATTT 59.899 45.455 21.65 0.00 0.00 2.17
343 364 3.123804 CTGCCTAGCGTACGATGATTTT 58.876 45.455 21.65 0.00 0.00 1.82
344 365 3.527533 TGCCTAGCGTACGATGATTTTT 58.472 40.909 21.65 0.00 0.00 1.94
345 366 3.554324 TGCCTAGCGTACGATGATTTTTC 59.446 43.478 21.65 0.00 0.00 2.29
346 367 3.554324 GCCTAGCGTACGATGATTTTTCA 59.446 43.478 21.65 0.00 0.00 2.69
347 368 4.211374 GCCTAGCGTACGATGATTTTTCAT 59.789 41.667 21.65 0.00 0.00 2.57
348 369 5.404366 GCCTAGCGTACGATGATTTTTCATA 59.596 40.000 21.65 0.00 0.00 2.15
349 370 6.615839 GCCTAGCGTACGATGATTTTTCATAC 60.616 42.308 21.65 0.00 0.00 2.39
350 371 5.311016 AGCGTACGATGATTTTTCATACG 57.689 39.130 21.65 5.74 34.56 3.06
351 372 5.038683 AGCGTACGATGATTTTTCATACGA 58.961 37.500 21.65 0.00 33.78 3.43
352 373 5.690409 AGCGTACGATGATTTTTCATACGAT 59.310 36.000 21.65 4.90 33.78 3.73
353 374 6.200286 AGCGTACGATGATTTTTCATACGATT 59.800 34.615 21.65 0.47 33.78 3.34
354 375 6.844279 GCGTACGATGATTTTTCATACGATTT 59.156 34.615 21.65 0.00 33.78 2.17
355 376 7.372396 GCGTACGATGATTTTTCATACGATTTT 59.628 33.333 21.65 0.00 33.78 1.82
356 377 8.869688 CGTACGATGATTTTTCATACGATTTTC 58.130 33.333 10.44 0.00 33.78 2.29
357 378 9.697250 GTACGATGATTTTTCATACGATTTTCA 57.303 29.630 11.78 0.00 0.00 2.69
363 384 9.697250 TGATTTTTCATACGATTTTCATACGAC 57.303 29.630 0.00 0.00 0.00 4.34
364 385 9.697250 GATTTTTCATACGATTTTCATACGACA 57.303 29.630 0.00 0.00 0.00 4.35
366 387 9.536558 TTTTTCATACGATTTTCATACGACAAG 57.463 29.630 0.00 0.00 0.00 3.16
367 388 8.468720 TTTCATACGATTTTCATACGACAAGA 57.531 30.769 0.00 0.00 0.00 3.02
368 389 7.445900 TCATACGATTTTCATACGACAAGAC 57.554 36.000 0.00 0.00 0.00 3.01
369 390 7.030768 TCATACGATTTTCATACGACAAGACA 58.969 34.615 0.00 0.00 0.00 3.41
370 391 5.511088 ACGATTTTCATACGACAAGACAC 57.489 39.130 0.00 0.00 0.00 3.67
371 392 4.986034 ACGATTTTCATACGACAAGACACA 59.014 37.500 0.00 0.00 0.00 3.72
372 393 5.118664 ACGATTTTCATACGACAAGACACAG 59.881 40.000 0.00 0.00 0.00 3.66
373 394 5.444613 CGATTTTCATACGACAAGACACAGG 60.445 44.000 0.00 0.00 0.00 4.00
374 395 2.363788 TCATACGACAAGACACAGGC 57.636 50.000 0.00 0.00 0.00 4.85
375 396 1.616374 TCATACGACAAGACACAGGCA 59.384 47.619 0.00 0.00 0.00 4.75
376 397 2.233676 TCATACGACAAGACACAGGCAT 59.766 45.455 0.00 0.00 0.00 4.40
377 398 2.078849 TACGACAAGACACAGGCATG 57.921 50.000 0.00 0.00 0.00 4.06
378 399 0.106708 ACGACAAGACACAGGCATGT 59.893 50.000 0.00 0.00 41.57 3.21
379 400 1.229428 CGACAAGACACAGGCATGTT 58.771 50.000 0.00 0.00 37.65 2.71
380 401 1.603802 CGACAAGACACAGGCATGTTT 59.396 47.619 0.00 0.00 37.65 2.83
381 402 2.033299 CGACAAGACACAGGCATGTTTT 59.967 45.455 0.00 0.00 37.65 2.43
382 403 3.632189 GACAAGACACAGGCATGTTTTC 58.368 45.455 0.00 0.95 37.65 2.29
383 404 2.362077 ACAAGACACAGGCATGTTTTCC 59.638 45.455 0.00 0.00 37.65 3.13
384 405 1.238439 AGACACAGGCATGTTTTCCG 58.762 50.000 0.00 0.00 37.65 4.30
385 406 1.202758 AGACACAGGCATGTTTTCCGA 60.203 47.619 0.00 0.00 37.65 4.55
386 407 1.197721 GACACAGGCATGTTTTCCGAG 59.802 52.381 0.00 0.00 37.65 4.63
387 408 0.523072 CACAGGCATGTTTTCCGAGG 59.477 55.000 0.00 0.00 37.65 4.63
388 409 0.110486 ACAGGCATGTTTTCCGAGGT 59.890 50.000 0.00 0.00 35.63 3.85
389 410 1.247567 CAGGCATGTTTTCCGAGGTT 58.752 50.000 0.00 0.00 0.00 3.50
390 411 1.613437 CAGGCATGTTTTCCGAGGTTT 59.387 47.619 0.00 0.00 0.00 3.27
391 412 1.613437 AGGCATGTTTTCCGAGGTTTG 59.387 47.619 0.00 0.00 0.00 2.93
392 413 1.336795 GGCATGTTTTCCGAGGTTTGG 60.337 52.381 0.00 0.00 0.00 3.28
393 414 1.336795 GCATGTTTTCCGAGGTTTGGG 60.337 52.381 0.00 0.00 0.00 4.12
394 415 0.966179 ATGTTTTCCGAGGTTTGGGC 59.034 50.000 0.00 0.00 0.00 5.36
395 416 1.110518 TGTTTTCCGAGGTTTGGGCC 61.111 55.000 0.00 0.00 0.00 5.80
396 417 1.532078 TTTTCCGAGGTTTGGGCCC 60.532 57.895 17.59 17.59 0.00 5.80
397 418 2.299727 TTTTCCGAGGTTTGGGCCCA 62.300 55.000 24.45 24.45 0.00 5.36
398 419 2.987355 TTTCCGAGGTTTGGGCCCAC 62.987 60.000 28.70 15.02 0.00 4.61
399 420 4.278513 CCGAGGTTTGGGCCCACA 62.279 66.667 28.70 17.72 0.00 4.17
400 421 2.983592 CGAGGTTTGGGCCCACAC 60.984 66.667 29.83 29.83 0.00 3.82
401 422 2.600470 GAGGTTTGGGCCCACACC 60.600 66.667 42.00 42.00 44.63 4.16
402 423 3.434179 AGGTTTGGGCCCACACCA 61.434 61.111 46.17 24.79 46.17 4.17
403 424 2.203773 GGTTTGGGCCCACACCAT 60.204 61.111 42.96 0.00 43.95 3.55
404 425 2.582493 GGTTTGGGCCCACACCATG 61.582 63.158 42.96 0.00 43.95 3.66
405 426 1.532794 GTTTGGGCCCACACCATGA 60.533 57.895 27.96 7.99 37.93 3.07
406 427 1.228831 TTTGGGCCCACACCATGAG 60.229 57.895 28.70 0.00 37.93 2.90
407 428 1.724148 TTTGGGCCCACACCATGAGA 61.724 55.000 28.70 2.55 37.93 3.27
408 429 1.508667 TTGGGCCCACACCATGAGAT 61.509 55.000 28.70 0.00 37.93 2.75
409 430 1.454479 GGGCCCACACCATGAGATG 60.454 63.158 19.95 0.00 0.00 2.90
410 431 1.609239 GGCCCACACCATGAGATGA 59.391 57.895 0.00 0.00 0.00 2.92
411 432 0.465097 GGCCCACACCATGAGATGAG 60.465 60.000 0.00 0.00 0.00 2.90
412 433 0.254178 GCCCACACCATGAGATGAGT 59.746 55.000 0.00 0.00 0.00 3.41
413 434 1.745141 GCCCACACCATGAGATGAGTC 60.745 57.143 0.00 0.00 0.00 3.36
414 435 1.836166 CCCACACCATGAGATGAGTCT 59.164 52.381 0.00 0.00 37.42 3.24
415 436 2.419713 CCCACACCATGAGATGAGTCTG 60.420 54.545 0.00 0.00 33.97 3.51
416 437 2.419713 CCACACCATGAGATGAGTCTGG 60.420 54.545 0.00 0.00 33.97 3.86
417 438 2.235650 CACACCATGAGATGAGTCTGGT 59.764 50.000 0.00 0.00 33.97 4.00
418 439 2.499289 ACACCATGAGATGAGTCTGGTC 59.501 50.000 0.00 0.00 33.97 4.02
419 440 1.753649 ACCATGAGATGAGTCTGGTCG 59.246 52.381 0.00 0.00 33.97 4.79
420 441 1.753649 CCATGAGATGAGTCTGGTCGT 59.246 52.381 0.00 0.00 33.97 4.34
421 442 2.952310 CCATGAGATGAGTCTGGTCGTA 59.048 50.000 0.00 0.00 33.97 3.43
422 443 3.243234 CCATGAGATGAGTCTGGTCGTAC 60.243 52.174 0.00 0.00 33.97 3.67
423 444 3.067684 TGAGATGAGTCTGGTCGTACA 57.932 47.619 0.00 0.00 33.97 2.90
424 445 3.418047 TGAGATGAGTCTGGTCGTACAA 58.582 45.455 0.00 0.00 33.97 2.41
425 446 3.824443 TGAGATGAGTCTGGTCGTACAAA 59.176 43.478 0.00 0.00 33.97 2.83
426 447 4.279922 TGAGATGAGTCTGGTCGTACAAAA 59.720 41.667 0.00 0.00 33.97 2.44
427 448 5.209818 AGATGAGTCTGGTCGTACAAAAA 57.790 39.130 0.00 0.00 32.13 1.94
428 449 5.794894 AGATGAGTCTGGTCGTACAAAAAT 58.205 37.500 0.00 0.00 32.13 1.82
429 450 5.869888 AGATGAGTCTGGTCGTACAAAAATC 59.130 40.000 0.00 0.00 32.13 2.17
430 451 3.985279 TGAGTCTGGTCGTACAAAAATCG 59.015 43.478 0.00 0.00 0.00 3.34
431 452 3.985925 GAGTCTGGTCGTACAAAAATCGT 59.014 43.478 0.00 0.00 0.00 3.73
432 453 5.125100 AGTCTGGTCGTACAAAAATCGTA 57.875 39.130 0.00 0.00 0.00 3.43
433 454 5.531634 AGTCTGGTCGTACAAAAATCGTAA 58.468 37.500 0.00 0.00 0.00 3.18
434 455 5.632347 AGTCTGGTCGTACAAAAATCGTAAG 59.368 40.000 0.00 0.00 0.00 2.34
450 471 5.034554 TCGTAAGAATTTCTGTCGTACGT 57.965 39.130 16.05 0.00 46.57 3.57
451 472 6.164408 TCGTAAGAATTTCTGTCGTACGTA 57.836 37.500 16.05 5.01 46.57 3.57
452 473 6.775088 TCGTAAGAATTTCTGTCGTACGTAT 58.225 36.000 16.05 0.00 46.57 3.06
453 474 7.905126 TCGTAAGAATTTCTGTCGTACGTATA 58.095 34.615 16.05 2.04 46.57 1.47
454 475 8.387354 TCGTAAGAATTTCTGTCGTACGTATAA 58.613 33.333 16.05 3.27 46.57 0.98
455 476 8.456797 CGTAAGAATTTCTGTCGTACGTATAAC 58.543 37.037 16.05 6.52 43.70 1.89
456 477 9.277565 GTAAGAATTTCTGTCGTACGTATAACA 57.722 33.333 16.05 11.06 0.00 2.41
457 478 7.966157 AGAATTTCTGTCGTACGTATAACAG 57.034 36.000 22.18 22.18 40.34 3.16
458 479 6.471519 AGAATTTCTGTCGTACGTATAACAGC 59.528 38.462 22.96 12.78 39.15 4.40
459 480 4.952262 TTCTGTCGTACGTATAACAGCT 57.048 40.909 22.96 0.00 39.15 4.24
460 481 4.526970 TCTGTCGTACGTATAACAGCTC 57.473 45.455 22.96 1.57 39.15 4.09
461 482 4.186926 TCTGTCGTACGTATAACAGCTCT 58.813 43.478 22.96 0.00 39.15 4.09
462 483 4.269603 TCTGTCGTACGTATAACAGCTCTC 59.730 45.833 22.96 0.35 39.15 3.20
463 484 4.186926 TGTCGTACGTATAACAGCTCTCT 58.813 43.478 16.05 0.00 0.00 3.10
464 485 5.351458 TGTCGTACGTATAACAGCTCTCTA 58.649 41.667 16.05 0.00 0.00 2.43
465 486 5.812127 TGTCGTACGTATAACAGCTCTCTAA 59.188 40.000 16.05 0.00 0.00 2.10
466 487 6.313658 TGTCGTACGTATAACAGCTCTCTAAA 59.686 38.462 16.05 0.00 0.00 1.85
467 488 7.148423 TGTCGTACGTATAACAGCTCTCTAAAA 60.148 37.037 16.05 0.00 0.00 1.52
468 489 7.163357 GTCGTACGTATAACAGCTCTCTAAAAC 59.837 40.741 16.05 0.00 0.00 2.43
469 490 6.963242 CGTACGTATAACAGCTCTCTAAAACA 59.037 38.462 7.22 0.00 0.00 2.83
470 491 7.642978 CGTACGTATAACAGCTCTCTAAAACAT 59.357 37.037 7.22 0.00 0.00 2.71
471 492 9.298774 GTACGTATAACAGCTCTCTAAAACATT 57.701 33.333 0.00 0.00 0.00 2.71
482 503 6.146347 GCTCTCTAAAACATTATAAGAGCCCG 59.854 42.308 9.70 0.00 45.28 6.13
492 513 0.834687 TAAGAGCCCGACCCACACTT 60.835 55.000 0.00 0.00 0.00 3.16
500 521 3.697542 GCCCGACCCACACTTTTATATTT 59.302 43.478 0.00 0.00 0.00 1.40
527 548 3.833070 ACGAAGGGAGTAATTCAGACTGT 59.167 43.478 1.59 0.00 0.00 3.55
542 563 9.903682 AATTCAGACTGTATCAAACATTTCTTG 57.096 29.630 1.59 0.00 37.50 3.02
549 3208 5.988561 TGTATCAAACATTTCTTGCCAAACC 59.011 36.000 0.00 0.00 31.43 3.27
552 3211 6.227298 TCAAACATTTCTTGCCAAACCTTA 57.773 33.333 0.00 0.00 0.00 2.69
559 3218 0.671251 TTGCCAAACCTTAACAGCCG 59.329 50.000 0.00 0.00 0.00 5.52
565 3224 2.200373 AACCTTAACAGCCGCAATCT 57.800 45.000 0.00 0.00 0.00 2.40
576 3235 2.153366 CCGCAATCTTTGGCAAACTT 57.847 45.000 8.93 2.95 0.00 2.66
639 3299 6.889595 AATCCCAACCACATTATTTCCAAT 57.110 33.333 0.00 0.00 0.00 3.16
641 3301 7.986553 ATCCCAACCACATTATTTCCAATAA 57.013 32.000 0.00 0.00 0.00 1.40
674 3335 3.070576 AAAATCAGCTGGCCCGGC 61.071 61.111 15.13 6.39 35.73 6.13
791 3460 2.914214 CACGTGGCAAAATTTCCGTATG 59.086 45.455 7.95 0.00 0.00 2.39
863 3542 0.399075 TCAAGAAAGTTCCGTCCCCC 59.601 55.000 0.00 0.00 0.00 5.40
889 3568 0.410663 TTACTTCCCCCGAGACTCCA 59.589 55.000 0.00 0.00 0.00 3.86
958 3656 0.037326 CTGCTCTCTACAAACCCGCA 60.037 55.000 0.00 0.00 0.00 5.69
965 3663 1.577328 CTACAAACCCGCACCTGCTG 61.577 60.000 0.00 0.00 39.32 4.41
986 3684 2.447379 ATCATCAGCCCCCTCGCT 60.447 61.111 0.00 0.00 40.65 4.93
1140 3838 2.507471 CCCTCAAGAAGGTAAGGAGCAT 59.493 50.000 0.00 0.00 44.56 3.79
1141 3839 3.539604 CCTCAAGAAGGTAAGGAGCATG 58.460 50.000 0.00 0.00 40.67 4.06
1216 3918 1.264045 ATTTGATGGGTTTGGGGGCG 61.264 55.000 0.00 0.00 0.00 6.13
1822 4524 3.565214 TTCAAGCCCACCTCGCCA 61.565 61.111 0.00 0.00 0.00 5.69
1876 4578 4.995058 TCCCCCAAGAACCGGCCT 62.995 66.667 0.00 0.00 0.00 5.19
1909 4611 1.462928 GGTGATGTTCCCCAACCCA 59.537 57.895 0.00 0.00 0.00 4.51
2041 4743 1.122019 AGTTCCTGGTCAAGACGCCT 61.122 55.000 0.00 0.00 0.00 5.52
2047 4749 2.637383 GGTCAAGACGCCTCCGAGT 61.637 63.158 0.00 0.00 38.29 4.18
2050 4752 2.992114 AAGACGCCTCCGAGTGCT 60.992 61.111 7.12 0.00 38.29 4.40
2200 4902 0.817634 CCACAAGGCTCGTTTCACCA 60.818 55.000 0.00 0.00 0.00 4.17
2359 5064 5.549347 ACTGTCAGGATATCATCTTGATGC 58.451 41.667 4.83 0.00 45.37 3.91
2373 5078 1.667236 TGATGCGAGGCGATCAATTT 58.333 45.000 0.00 0.00 0.00 1.82
2478 5183 7.291411 ACTGTACATGGGTTAGTGATCTATC 57.709 40.000 0.00 0.00 0.00 2.08
2479 5184 7.069986 ACTGTACATGGGTTAGTGATCTATCT 58.930 38.462 0.00 0.00 0.00 1.98
2480 5185 8.225416 ACTGTACATGGGTTAGTGATCTATCTA 58.775 37.037 0.00 0.00 0.00 1.98
2481 5186 9.249053 CTGTACATGGGTTAGTGATCTATCTAT 57.751 37.037 0.00 0.00 0.00 1.98
2727 5432 5.010516 TCCTTTCGCATCCTTTTCATTCAAA 59.989 36.000 0.00 0.00 0.00 2.69
2728 5433 5.695816 CCTTTCGCATCCTTTTCATTCAAAA 59.304 36.000 0.00 0.00 32.77 2.44
2729 5434 6.346838 CCTTTCGCATCCTTTTCATTCAAAAC 60.347 38.462 0.00 0.00 30.42 2.43
2730 5435 5.193663 TCGCATCCTTTTCATTCAAAACA 57.806 34.783 0.00 0.00 30.42 2.83
2731 5436 5.221880 TCGCATCCTTTTCATTCAAAACAG 58.778 37.500 0.00 0.00 30.42 3.16
2732 5437 4.386652 CGCATCCTTTTCATTCAAAACAGG 59.613 41.667 0.00 0.00 30.42 4.00
2733 5438 4.152938 GCATCCTTTTCATTCAAAACAGGC 59.847 41.667 0.00 0.00 30.42 4.85
2734 5439 5.299148 CATCCTTTTCATTCAAAACAGGCA 58.701 37.500 0.00 0.00 30.42 4.75
2735 5440 4.947645 TCCTTTTCATTCAAAACAGGCAG 58.052 39.130 0.00 0.00 30.42 4.85
2736 5441 4.060205 CCTTTTCATTCAAAACAGGCAGG 58.940 43.478 0.00 0.00 30.42 4.85
2737 5442 4.443315 CCTTTTCATTCAAAACAGGCAGGT 60.443 41.667 0.00 0.00 30.42 4.00
2738 5443 3.731652 TTCATTCAAAACAGGCAGGTG 57.268 42.857 0.00 0.00 0.00 4.00
2739 5444 2.942804 TCATTCAAAACAGGCAGGTGA 58.057 42.857 0.00 0.00 0.00 4.02
2740 5445 2.886523 TCATTCAAAACAGGCAGGTGAG 59.113 45.455 0.00 0.00 0.00 3.51
2741 5446 2.727123 TTCAAAACAGGCAGGTGAGA 57.273 45.000 0.00 0.00 0.00 3.27
2742 5447 2.260844 TCAAAACAGGCAGGTGAGAG 57.739 50.000 0.00 0.00 0.00 3.20
2743 5448 1.202806 TCAAAACAGGCAGGTGAGAGG 60.203 52.381 0.00 0.00 0.00 3.69
2744 5449 0.111253 AAAACAGGCAGGTGAGAGGG 59.889 55.000 0.00 0.00 0.00 4.30
2745 5450 1.783250 AAACAGGCAGGTGAGAGGGG 61.783 60.000 0.00 0.00 0.00 4.79
2746 5451 2.284921 CAGGCAGGTGAGAGGGGA 60.285 66.667 0.00 0.00 0.00 4.81
2747 5452 2.040278 AGGCAGGTGAGAGGGGAG 59.960 66.667 0.00 0.00 0.00 4.30
2748 5453 3.086600 GGCAGGTGAGAGGGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
2749 5454 2.039624 GCAGGTGAGAGGGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
2770 5475 6.012745 AGGAGAGTAAATTGCAGAAAACCAT 58.987 36.000 0.00 0.00 0.00 3.55
2819 5524 8.747538 AAAACACTAGGTTACAGTTTCTTGAT 57.252 30.769 0.00 0.00 39.29 2.57
2838 5543 7.974504 TCTTGATAAAAAGTACCACCTCTCTT 58.025 34.615 0.00 0.00 0.00 2.85
2850 5555 7.778382 AGTACCACCTCTCTTGTAAACATTTTT 59.222 33.333 0.00 0.00 0.00 1.94
2851 5556 6.805713 ACCACCTCTCTTGTAAACATTTTTG 58.194 36.000 0.00 0.00 0.00 2.44
2852 5557 5.691754 CCACCTCTCTTGTAAACATTTTTGC 59.308 40.000 0.00 0.00 0.00 3.68
2856 5571 7.147312 CCTCTCTTGTAAACATTTTTGCATCA 58.853 34.615 0.00 0.00 37.20 3.07
2877 5592 4.218635 TCAGCAGATTAGTCTCGTTTGAGT 59.781 41.667 0.00 0.00 43.09 3.41
2884 5599 2.277084 AGTCTCGTTTGAGTGCGTTTT 58.723 42.857 0.00 0.00 43.09 2.43
2895 5610 3.064207 GAGTGCGTTTTATGACAGGTGA 58.936 45.455 0.00 0.00 0.00 4.02
2896 5611 3.674997 AGTGCGTTTTATGACAGGTGAT 58.325 40.909 0.00 0.00 0.00 3.06
2898 5613 3.684788 GTGCGTTTTATGACAGGTGATCT 59.315 43.478 0.00 0.00 0.00 2.75
2899 5614 4.154195 GTGCGTTTTATGACAGGTGATCTT 59.846 41.667 0.00 0.00 0.00 2.40
2900 5615 4.391830 TGCGTTTTATGACAGGTGATCTTC 59.608 41.667 0.00 0.00 0.00 2.87
2901 5616 4.391830 GCGTTTTATGACAGGTGATCTTCA 59.608 41.667 0.00 0.00 0.00 3.02
2902 5617 5.671329 GCGTTTTATGACAGGTGATCTTCAC 60.671 44.000 0.00 0.00 46.23 3.18
2913 5628 4.553330 GTGATCTTCACCTCCCTTGTAA 57.447 45.455 0.00 0.00 41.37 2.41
2914 5629 4.906618 GTGATCTTCACCTCCCTTGTAAA 58.093 43.478 0.00 0.00 41.37 2.01
2915 5630 4.695928 GTGATCTTCACCTCCCTTGTAAAC 59.304 45.833 0.00 0.00 41.37 2.01
2916 5631 4.349636 TGATCTTCACCTCCCTTGTAAACA 59.650 41.667 0.00 0.00 0.00 2.83
2917 5632 4.993705 TCTTCACCTCCCTTGTAAACAT 57.006 40.909 0.00 0.00 0.00 2.71
2918 5633 5.319043 TCTTCACCTCCCTTGTAAACATT 57.681 39.130 0.00 0.00 0.00 2.71
2919 5634 5.313712 TCTTCACCTCCCTTGTAAACATTC 58.686 41.667 0.00 0.00 0.00 2.67
2920 5635 4.715534 TCACCTCCCTTGTAAACATTCA 57.284 40.909 0.00 0.00 0.00 2.57
2921 5636 5.055265 TCACCTCCCTTGTAAACATTCAA 57.945 39.130 0.00 0.00 0.00 2.69
2922 5637 5.640147 TCACCTCCCTTGTAAACATTCAAT 58.360 37.500 0.00 0.00 0.00 2.57
2923 5638 5.710099 TCACCTCCCTTGTAAACATTCAATC 59.290 40.000 0.00 0.00 0.00 2.67
2924 5639 4.700213 ACCTCCCTTGTAAACATTCAATCG 59.300 41.667 0.00 0.00 0.00 3.34
2925 5640 4.700213 CCTCCCTTGTAAACATTCAATCGT 59.300 41.667 0.00 0.00 0.00 3.73
2926 5641 5.391950 CCTCCCTTGTAAACATTCAATCGTG 60.392 44.000 0.00 0.00 0.00 4.35
2927 5642 4.457603 TCCCTTGTAAACATTCAATCGTGG 59.542 41.667 0.00 0.00 0.00 4.94
2928 5643 4.217550 CCCTTGTAAACATTCAATCGTGGT 59.782 41.667 0.00 0.00 0.00 4.16
2929 5644 5.153513 CCTTGTAAACATTCAATCGTGGTG 58.846 41.667 0.00 0.00 0.00 4.17
2930 5645 5.049060 CCTTGTAAACATTCAATCGTGGTGA 60.049 40.000 0.00 0.00 0.00 4.02
2931 5646 6.349280 CCTTGTAAACATTCAATCGTGGTGAT 60.349 38.462 0.00 0.00 39.67 3.06
2932 5647 6.176975 TGTAAACATTCAATCGTGGTGATC 57.823 37.500 0.00 0.00 35.84 2.92
2933 5648 5.937540 TGTAAACATTCAATCGTGGTGATCT 59.062 36.000 0.00 0.00 35.84 2.75
2934 5649 5.964958 AAACATTCAATCGTGGTGATCTT 57.035 34.783 0.00 0.00 35.84 2.40
2935 5650 5.551760 AACATTCAATCGTGGTGATCTTC 57.448 39.130 0.00 0.00 35.84 2.87
2936 5651 4.578871 ACATTCAATCGTGGTGATCTTCA 58.421 39.130 0.00 0.00 35.84 3.02
2937 5652 4.393062 ACATTCAATCGTGGTGATCTTCAC 59.607 41.667 8.35 8.35 46.23 3.18
2949 5664 5.359194 GTGATCTTCACCTCCCTATTTGA 57.641 43.478 0.00 0.00 41.37 2.69
2957 5672 5.263599 TCACCTCCCTATTTGACTTACGTA 58.736 41.667 0.00 0.00 0.00 3.57
3086 5803 1.429825 CACAAAACCGGTTGCACGA 59.570 52.632 23.08 0.00 35.47 4.35
3181 5898 1.382146 ATCGGGGTTTAGGGAGCGA 60.382 57.895 0.00 0.00 0.00 4.93
3370 6970 3.993614 TAGGGAACGACGGCGGCTA 62.994 63.158 18.49 0.00 43.17 3.93
3456 7065 2.047179 GCTTCCCGCGAAAGGAGT 60.047 61.111 8.23 0.00 34.08 3.85
3460 7069 4.697756 CCCGCGAAAGGAGTGGCA 62.698 66.667 8.23 0.00 37.91 4.92
3554 7171 2.584791 GTGATGCCACGTAAGCAAAAG 58.415 47.619 15.48 0.00 44.83 2.27
3596 9629 3.106672 CGCGCTTAAACGAGACTAATCT 58.893 45.455 5.56 0.00 38.15 2.40
3614 9647 5.613358 AATCTGTCGATCAGTGGTTTTTC 57.387 39.130 12.62 0.00 43.97 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.038033 TGTGTTTTCATTTACGGCTTTCAC 58.962 37.500 0.00 0.00 0.00 3.18
50 66 3.006659 TGCTGTGTTTTCATTTACGGC 57.993 42.857 0.00 0.00 43.79 5.68
53 69 8.868916 TCTTTCTTTTGCTGTGTTTTCATTTAC 58.131 29.630 0.00 0.00 0.00 2.01
63 79 5.659440 TCCTTTTCTTTCTTTTGCTGTGT 57.341 34.783 0.00 0.00 0.00 3.72
158 176 1.227999 CGTTCGCTCACATGGGTTGT 61.228 55.000 0.00 0.00 39.91 3.32
185 203 2.019984 GGCCTAGCAATCAGGTTTCTG 58.980 52.381 0.00 0.00 42.21 3.02
193 211 1.344953 ATGGGTCGGCCTAGCAATCA 61.345 55.000 5.77 0.00 34.45 2.57
194 212 0.685097 TATGGGTCGGCCTAGCAATC 59.315 55.000 5.77 0.00 34.45 2.67
215 234 4.510340 GTCACTAAATCGACTGGTTTGTGT 59.490 41.667 11.38 1.58 0.00 3.72
219 238 4.062991 GTGGTCACTAAATCGACTGGTTT 58.937 43.478 0.00 0.00 32.57 3.27
220 239 3.070446 TGTGGTCACTAAATCGACTGGTT 59.930 43.478 2.66 0.00 32.57 3.67
229 248 9.396022 CCATCTTAAATACTGTGGTCACTAAAT 57.604 33.333 2.66 0.00 0.00 1.40
235 254 6.957631 ACATCCATCTTAAATACTGTGGTCA 58.042 36.000 0.00 0.00 0.00 4.02
236 255 8.958119 TTACATCCATCTTAAATACTGTGGTC 57.042 34.615 0.00 0.00 0.00 4.02
249 268 7.230849 TCTTGCACAATTTTACATCCATCTT 57.769 32.000 0.00 0.00 0.00 2.40
260 279 9.979578 TGTGATTAACTAATCTTGCACAATTTT 57.020 25.926 10.11 0.00 41.93 1.82
267 288 8.735692 TCATCATGTGATTAACTAATCTTGCA 57.264 30.769 10.11 7.38 41.93 4.08
295 316 7.047460 TCGAATGTTTTATAGAGGGAGTACC 57.953 40.000 0.00 0.00 40.67 3.34
302 323 6.316390 AGGCAGTTTCGAATGTTTTATAGAGG 59.684 38.462 0.00 0.00 0.00 3.69
307 328 5.447279 CGCTAGGCAGTTTCGAATGTTTTAT 60.447 40.000 0.00 0.00 0.00 1.40
313 334 1.359848 ACGCTAGGCAGTTTCGAATG 58.640 50.000 0.00 0.00 0.00 2.67
314 335 2.537401 GTACGCTAGGCAGTTTCGAAT 58.463 47.619 0.00 0.00 0.00 3.34
315 336 1.730121 CGTACGCTAGGCAGTTTCGAA 60.730 52.381 0.52 0.00 0.00 3.71
316 337 0.179181 CGTACGCTAGGCAGTTTCGA 60.179 55.000 0.52 0.00 0.00 3.71
317 338 0.179181 TCGTACGCTAGGCAGTTTCG 60.179 55.000 11.24 0.00 0.00 3.46
318 339 1.852895 CATCGTACGCTAGGCAGTTTC 59.147 52.381 11.24 0.00 0.00 2.78
319 340 1.475280 TCATCGTACGCTAGGCAGTTT 59.525 47.619 11.24 0.00 0.00 2.66
320 341 1.100510 TCATCGTACGCTAGGCAGTT 58.899 50.000 11.24 0.00 0.00 3.16
321 342 1.319541 ATCATCGTACGCTAGGCAGT 58.680 50.000 11.24 0.00 0.00 4.40
322 343 2.423926 AATCATCGTACGCTAGGCAG 57.576 50.000 11.24 0.00 0.00 4.85
323 344 2.882927 AAATCATCGTACGCTAGGCA 57.117 45.000 11.24 0.00 0.00 4.75
324 345 3.554324 TGAAAAATCATCGTACGCTAGGC 59.446 43.478 11.24 0.00 0.00 3.93
325 346 5.907197 ATGAAAAATCATCGTACGCTAGG 57.093 39.130 11.24 0.00 0.00 3.02
331 352 9.697250 TGAAAATCGTATGAAAAATCATCGTAC 57.303 29.630 0.00 0.00 36.42 3.67
337 358 9.697250 GTCGTATGAAAATCGTATGAAAAATCA 57.303 29.630 3.69 0.00 36.11 2.57
338 359 9.697250 TGTCGTATGAAAATCGTATGAAAAATC 57.303 29.630 3.69 0.00 36.11 2.17
340 361 9.536558 CTTGTCGTATGAAAATCGTATGAAAAA 57.463 29.630 3.69 2.39 36.11 1.94
341 362 8.927721 TCTTGTCGTATGAAAATCGTATGAAAA 58.072 29.630 3.69 4.38 36.11 2.29
342 363 8.377681 GTCTTGTCGTATGAAAATCGTATGAAA 58.622 33.333 3.69 0.00 36.11 2.69
343 364 7.542824 TGTCTTGTCGTATGAAAATCGTATGAA 59.457 33.333 3.69 0.00 36.11 2.57
344 365 7.008901 GTGTCTTGTCGTATGAAAATCGTATGA 59.991 37.037 0.00 0.00 32.96 2.15
345 366 7.111139 GTGTCTTGTCGTATGAAAATCGTATG 58.889 38.462 0.00 0.00 0.00 2.39
346 367 6.809689 TGTGTCTTGTCGTATGAAAATCGTAT 59.190 34.615 0.00 0.00 0.00 3.06
347 368 6.151004 TGTGTCTTGTCGTATGAAAATCGTA 58.849 36.000 0.00 0.00 0.00 3.43
348 369 4.986034 TGTGTCTTGTCGTATGAAAATCGT 59.014 37.500 0.00 0.00 0.00 3.73
349 370 5.444613 CCTGTGTCTTGTCGTATGAAAATCG 60.445 44.000 0.00 0.00 0.00 3.34
350 371 5.671329 GCCTGTGTCTTGTCGTATGAAAATC 60.671 44.000 0.00 0.00 0.00 2.17
351 372 4.154195 GCCTGTGTCTTGTCGTATGAAAAT 59.846 41.667 0.00 0.00 0.00 1.82
352 373 3.496884 GCCTGTGTCTTGTCGTATGAAAA 59.503 43.478 0.00 0.00 0.00 2.29
353 374 3.064207 GCCTGTGTCTTGTCGTATGAAA 58.936 45.455 0.00 0.00 0.00 2.69
354 375 2.036604 TGCCTGTGTCTTGTCGTATGAA 59.963 45.455 0.00 0.00 0.00 2.57
355 376 1.616374 TGCCTGTGTCTTGTCGTATGA 59.384 47.619 0.00 0.00 0.00 2.15
356 377 2.078849 TGCCTGTGTCTTGTCGTATG 57.921 50.000 0.00 0.00 0.00 2.39
357 378 2.028112 ACATGCCTGTGTCTTGTCGTAT 60.028 45.455 0.00 0.00 33.22 3.06
358 379 1.343142 ACATGCCTGTGTCTTGTCGTA 59.657 47.619 0.00 0.00 33.22 3.43
359 380 0.106708 ACATGCCTGTGTCTTGTCGT 59.893 50.000 0.00 0.00 33.22 4.34
360 381 1.229428 AACATGCCTGTGTCTTGTCG 58.771 50.000 0.00 0.00 35.22 4.35
361 382 3.550842 GGAAAACATGCCTGTGTCTTGTC 60.551 47.826 0.00 0.00 35.22 3.18
362 383 2.362077 GGAAAACATGCCTGTGTCTTGT 59.638 45.455 0.00 0.00 35.22 3.16
363 384 2.605338 CGGAAAACATGCCTGTGTCTTG 60.605 50.000 0.00 0.00 35.22 3.02
364 385 1.608590 CGGAAAACATGCCTGTGTCTT 59.391 47.619 0.00 0.00 35.22 3.01
365 386 1.202758 TCGGAAAACATGCCTGTGTCT 60.203 47.619 0.00 0.00 35.22 3.41
366 387 1.197721 CTCGGAAAACATGCCTGTGTC 59.802 52.381 0.00 0.00 35.22 3.67
367 388 1.238439 CTCGGAAAACATGCCTGTGT 58.762 50.000 0.00 0.00 35.22 3.72
368 389 0.523072 CCTCGGAAAACATGCCTGTG 59.477 55.000 0.00 0.00 35.22 3.66
369 390 0.110486 ACCTCGGAAAACATGCCTGT 59.890 50.000 0.00 0.00 37.12 4.00
370 391 1.247567 AACCTCGGAAAACATGCCTG 58.752 50.000 0.00 0.00 0.00 4.85
371 392 1.613437 CAAACCTCGGAAAACATGCCT 59.387 47.619 0.00 0.00 0.00 4.75
372 393 1.336795 CCAAACCTCGGAAAACATGCC 60.337 52.381 0.00 0.00 0.00 4.40
373 394 1.336795 CCCAAACCTCGGAAAACATGC 60.337 52.381 0.00 0.00 0.00 4.06
374 395 1.336795 GCCCAAACCTCGGAAAACATG 60.337 52.381 0.00 0.00 0.00 3.21
375 396 0.966179 GCCCAAACCTCGGAAAACAT 59.034 50.000 0.00 0.00 0.00 2.71
376 397 1.110518 GGCCCAAACCTCGGAAAACA 61.111 55.000 0.00 0.00 0.00 2.83
377 398 1.663739 GGCCCAAACCTCGGAAAAC 59.336 57.895 0.00 0.00 0.00 2.43
378 399 1.532078 GGGCCCAAACCTCGGAAAA 60.532 57.895 19.95 0.00 0.00 2.29
379 400 2.116556 GGGCCCAAACCTCGGAAA 59.883 61.111 19.95 0.00 0.00 3.13
380 401 3.179339 TGGGCCCAAACCTCGGAA 61.179 61.111 26.33 0.00 0.00 4.30
381 402 3.961414 GTGGGCCCAAACCTCGGA 61.961 66.667 30.64 0.00 0.00 4.55
382 403 4.278513 TGTGGGCCCAAACCTCGG 62.279 66.667 30.64 0.00 0.00 4.63
383 404 2.983592 GTGTGGGCCCAAACCTCG 60.984 66.667 32.51 0.00 0.00 4.63
387 408 1.532794 TCATGGTGTGGGCCCAAAC 60.533 57.895 34.32 34.32 35.14 2.93
388 409 1.228831 CTCATGGTGTGGGCCCAAA 60.229 57.895 30.64 21.76 35.14 3.28
389 410 1.508667 ATCTCATGGTGTGGGCCCAA 61.509 55.000 30.64 12.27 35.14 4.12
390 411 1.930133 ATCTCATGGTGTGGGCCCA 60.930 57.895 24.45 24.45 36.16 5.36
391 412 1.454479 CATCTCATGGTGTGGGCCC 60.454 63.158 17.59 17.59 0.00 5.80
392 413 0.465097 CTCATCTCATGGTGTGGGCC 60.465 60.000 0.00 0.00 0.00 5.80
393 414 0.254178 ACTCATCTCATGGTGTGGGC 59.746 55.000 0.00 0.00 0.00 5.36
394 415 1.836166 AGACTCATCTCATGGTGTGGG 59.164 52.381 0.00 0.00 0.00 4.61
395 416 2.419713 CCAGACTCATCTCATGGTGTGG 60.420 54.545 0.00 0.00 37.97 4.17
396 417 2.235650 ACCAGACTCATCTCATGGTGTG 59.764 50.000 0.00 0.00 29.65 3.82
397 418 2.499289 GACCAGACTCATCTCATGGTGT 59.501 50.000 0.00 0.00 30.69 4.16
398 419 2.480932 CGACCAGACTCATCTCATGGTG 60.481 54.545 0.00 0.00 30.69 4.17
399 420 1.753649 CGACCAGACTCATCTCATGGT 59.246 52.381 0.00 0.00 32.69 3.55
400 421 1.753649 ACGACCAGACTCATCTCATGG 59.246 52.381 0.00 0.00 30.42 3.66
401 422 3.378427 TGTACGACCAGACTCATCTCATG 59.622 47.826 0.00 0.00 30.42 3.07
402 423 3.621558 TGTACGACCAGACTCATCTCAT 58.378 45.455 0.00 0.00 30.42 2.90
403 424 3.067684 TGTACGACCAGACTCATCTCA 57.932 47.619 0.00 0.00 30.42 3.27
404 425 4.436242 TTTGTACGACCAGACTCATCTC 57.564 45.455 0.00 0.00 30.42 2.75
405 426 4.866508 TTTTGTACGACCAGACTCATCT 57.133 40.909 0.00 0.00 34.57 2.90
406 427 5.220228 CGATTTTTGTACGACCAGACTCATC 60.220 44.000 0.00 0.00 0.00 2.92
407 428 4.625742 CGATTTTTGTACGACCAGACTCAT 59.374 41.667 0.00 0.00 0.00 2.90
408 429 3.985279 CGATTTTTGTACGACCAGACTCA 59.015 43.478 0.00 0.00 0.00 3.41
409 430 3.985925 ACGATTTTTGTACGACCAGACTC 59.014 43.478 0.00 0.00 0.00 3.36
410 431 3.986277 ACGATTTTTGTACGACCAGACT 58.014 40.909 0.00 0.00 0.00 3.24
411 432 5.630680 TCTTACGATTTTTGTACGACCAGAC 59.369 40.000 0.00 0.00 0.00 3.51
412 433 5.771469 TCTTACGATTTTTGTACGACCAGA 58.229 37.500 0.00 0.00 0.00 3.86
413 434 6.456447 TTCTTACGATTTTTGTACGACCAG 57.544 37.500 0.00 0.00 0.00 4.00
414 435 7.424227 AATTCTTACGATTTTTGTACGACCA 57.576 32.000 0.00 0.00 0.00 4.02
415 436 8.225777 AGAAATTCTTACGATTTTTGTACGACC 58.774 33.333 0.00 0.00 0.00 4.79
416 437 9.037417 CAGAAATTCTTACGATTTTTGTACGAC 57.963 33.333 0.00 0.00 0.00 4.34
417 438 8.767085 ACAGAAATTCTTACGATTTTTGTACGA 58.233 29.630 0.00 0.00 0.00 3.43
418 439 8.928844 ACAGAAATTCTTACGATTTTTGTACG 57.071 30.769 0.00 0.00 0.00 3.67
419 440 9.037417 CGACAGAAATTCTTACGATTTTTGTAC 57.963 33.333 11.29 0.00 0.00 2.90
420 441 8.767085 ACGACAGAAATTCTTACGATTTTTGTA 58.233 29.630 19.65 0.00 0.00 2.41
421 442 7.636326 ACGACAGAAATTCTTACGATTTTTGT 58.364 30.769 19.65 5.71 0.00 2.83
422 443 9.037417 GTACGACAGAAATTCTTACGATTTTTG 57.963 33.333 19.65 0.00 0.00 2.44
423 444 7.948363 CGTACGACAGAAATTCTTACGATTTTT 59.052 33.333 10.44 5.31 41.34 1.94
424 445 7.115378 ACGTACGACAGAAATTCTTACGATTTT 59.885 33.333 24.41 6.16 41.34 1.82
425 446 6.583806 ACGTACGACAGAAATTCTTACGATTT 59.416 34.615 24.41 6.43 41.34 2.17
426 447 6.088824 ACGTACGACAGAAATTCTTACGATT 58.911 36.000 24.41 6.97 41.34 3.34
427 448 5.634896 ACGTACGACAGAAATTCTTACGAT 58.365 37.500 24.41 10.82 41.34 3.73
428 449 5.034554 ACGTACGACAGAAATTCTTACGA 57.965 39.130 24.41 8.39 41.34 3.43
429 450 8.456797 GTTATACGTACGACAGAAATTCTTACG 58.543 37.037 24.41 18.01 43.26 3.18
430 451 9.277565 TGTTATACGTACGACAGAAATTCTTAC 57.722 33.333 24.41 0.86 0.00 2.34
431 452 9.494479 CTGTTATACGTACGACAGAAATTCTTA 57.506 33.333 25.01 0.00 41.46 2.10
432 453 7.008992 GCTGTTATACGTACGACAGAAATTCTT 59.991 37.037 29.84 5.60 41.46 2.52
433 454 6.471519 GCTGTTATACGTACGACAGAAATTCT 59.528 38.462 29.84 6.07 41.46 2.40
434 455 6.471519 AGCTGTTATACGTACGACAGAAATTC 59.528 38.462 29.84 18.12 41.46 2.17
435 456 6.327934 AGCTGTTATACGTACGACAGAAATT 58.672 36.000 29.84 16.24 41.46 1.82
436 457 5.888105 AGCTGTTATACGTACGACAGAAAT 58.112 37.500 29.84 18.19 41.46 2.17
437 458 5.122869 AGAGCTGTTATACGTACGACAGAAA 59.877 40.000 29.84 12.16 41.46 2.52
438 459 4.633126 AGAGCTGTTATACGTACGACAGAA 59.367 41.667 29.84 15.39 41.46 3.02
439 460 4.186926 AGAGCTGTTATACGTACGACAGA 58.813 43.478 29.84 10.93 41.46 3.41
440 461 4.270566 AGAGAGCTGTTATACGTACGACAG 59.729 45.833 24.41 23.70 41.76 3.51
441 462 4.186926 AGAGAGCTGTTATACGTACGACA 58.813 43.478 24.41 14.56 0.00 4.35
442 463 4.792528 AGAGAGCTGTTATACGTACGAC 57.207 45.455 24.41 10.20 0.00 4.34
443 464 6.908870 TTTAGAGAGCTGTTATACGTACGA 57.091 37.500 24.41 6.04 0.00 3.43
444 465 6.963242 TGTTTTAGAGAGCTGTTATACGTACG 59.037 38.462 15.01 15.01 0.00 3.67
445 466 8.853469 ATGTTTTAGAGAGCTGTTATACGTAC 57.147 34.615 0.00 0.00 0.00 3.67
453 474 9.103861 GCTCTTATAATGTTTTAGAGAGCTGTT 57.896 33.333 13.48 0.00 44.38 3.16
454 475 7.713073 GGCTCTTATAATGTTTTAGAGAGCTGT 59.287 37.037 18.38 0.00 45.50 4.40
455 476 7.172361 GGGCTCTTATAATGTTTTAGAGAGCTG 59.828 40.741 18.38 0.00 45.50 4.24
456 477 7.220740 GGGCTCTTATAATGTTTTAGAGAGCT 58.779 38.462 18.38 0.00 45.50 4.09
457 478 6.146347 CGGGCTCTTATAATGTTTTAGAGAGC 59.854 42.308 12.61 12.61 45.49 4.09
458 479 7.382759 GTCGGGCTCTTATAATGTTTTAGAGAG 59.617 40.741 0.00 0.00 36.06 3.20
459 480 7.208080 GTCGGGCTCTTATAATGTTTTAGAGA 58.792 38.462 0.00 0.00 35.48 3.10
460 481 6.424207 GGTCGGGCTCTTATAATGTTTTAGAG 59.576 42.308 0.00 0.00 36.33 2.43
461 482 6.285990 GGTCGGGCTCTTATAATGTTTTAGA 58.714 40.000 0.00 0.00 0.00 2.10
462 483 5.469084 GGGTCGGGCTCTTATAATGTTTTAG 59.531 44.000 0.00 0.00 0.00 1.85
463 484 5.104444 TGGGTCGGGCTCTTATAATGTTTTA 60.104 40.000 0.00 0.00 0.00 1.52
464 485 4.204799 GGGTCGGGCTCTTATAATGTTTT 58.795 43.478 0.00 0.00 0.00 2.43
465 486 3.201266 TGGGTCGGGCTCTTATAATGTTT 59.799 43.478 0.00 0.00 0.00 2.83
466 487 2.775384 TGGGTCGGGCTCTTATAATGTT 59.225 45.455 0.00 0.00 0.00 2.71
467 488 2.104281 GTGGGTCGGGCTCTTATAATGT 59.896 50.000 0.00 0.00 0.00 2.71
468 489 2.104111 TGTGGGTCGGGCTCTTATAATG 59.896 50.000 0.00 0.00 0.00 1.90
469 490 2.104281 GTGTGGGTCGGGCTCTTATAAT 59.896 50.000 0.00 0.00 0.00 1.28
470 491 1.483415 GTGTGGGTCGGGCTCTTATAA 59.517 52.381 0.00 0.00 0.00 0.98
471 492 1.117150 GTGTGGGTCGGGCTCTTATA 58.883 55.000 0.00 0.00 0.00 0.98
500 521 7.386848 CAGTCTGAATTACTCCCTTCGTAAAAA 59.613 37.037 0.00 0.00 31.36 1.94
508 529 7.496346 TTGATACAGTCTGAATTACTCCCTT 57.504 36.000 6.91 0.00 0.00 3.95
527 548 6.418057 AGGTTTGGCAAGAAATGTTTGATA 57.582 33.333 0.00 0.00 0.00 2.15
542 563 1.080772 GCGGCTGTTAAGGTTTGGC 60.081 57.895 0.00 0.00 0.00 4.52
549 3208 2.867429 CCAAAGATTGCGGCTGTTAAG 58.133 47.619 0.00 0.00 0.00 1.85
552 3211 1.290009 GCCAAAGATTGCGGCTGTT 59.710 52.632 0.00 0.00 42.78 3.16
559 3218 4.810491 TCTTTCAAGTTTGCCAAAGATTGC 59.190 37.500 9.22 0.00 30.66 3.56
565 3224 6.279513 TCTTCTTCTTTCAAGTTTGCCAAA 57.720 33.333 0.00 0.00 0.00 3.28
572 3231 5.105917 TGCCGTTTTCTTCTTCTTTCAAGTT 60.106 36.000 0.00 0.00 0.00 2.66
576 3235 3.692101 TGTGCCGTTTTCTTCTTCTTTCA 59.308 39.130 0.00 0.00 0.00 2.69
674 3335 3.337358 GGATTTCAATTTTGCACAGGGG 58.663 45.455 0.00 0.00 0.00 4.79
791 3460 2.580815 GCCCACCCTACCGTGTAC 59.419 66.667 0.00 0.00 31.47 2.90
863 3542 0.616679 TCGGGGGAAGTAACTGAGGG 60.617 60.000 0.00 0.00 0.00 4.30
875 3554 1.000486 CTCTTGGAGTCTCGGGGGA 60.000 63.158 0.00 0.00 0.00 4.81
889 3568 0.389948 CCAACGGCTAGTTCGCTCTT 60.390 55.000 7.38 0.00 42.02 2.85
924 3603 2.627737 GCAGAGACGGACGACTGGT 61.628 63.158 0.87 0.00 0.00 4.00
925 3604 2.179517 GCAGAGACGGACGACTGG 59.820 66.667 0.87 0.00 0.00 4.00
927 3606 1.003112 AGAGCAGAGACGGACGACT 60.003 57.895 0.00 0.00 0.00 4.18
929 3608 0.535797 TAGAGAGCAGAGACGGACGA 59.464 55.000 0.00 0.00 0.00 4.20
965 3663 1.072852 GAGGGGGCTGATGATGAGC 59.927 63.158 0.00 0.00 35.57 4.26
1021 3719 2.124983 CTCCTGGCGACCATGGTG 60.125 66.667 25.52 15.67 30.82 4.17
1218 3920 4.527157 GTCCATCTGCTTGCGCGC 62.527 66.667 27.26 27.26 39.65 6.86
1219 3921 3.869272 GGTCCATCTGCTTGCGCG 61.869 66.667 0.00 0.00 39.65 6.86
1224 3926 2.045926 GCACCGGTCCATCTGCTT 60.046 61.111 2.59 0.00 0.00 3.91
1225 3927 2.673200 ATGCACCGGTCCATCTGCT 61.673 57.895 4.77 0.00 0.00 4.24
1669 4371 2.671682 GTGGCCTTCCTGGTCCTC 59.328 66.667 3.32 0.00 40.46 3.71
1792 4494 1.473434 GGCTTGAACTGTATCCGGGAG 60.473 57.143 0.00 0.00 0.00 4.30
1876 4578 2.852075 ACCGTCTTCCTGCCCCAA 60.852 61.111 0.00 0.00 0.00 4.12
1884 4586 0.392595 GGGGAACATCACCGTCTTCC 60.393 60.000 0.00 0.00 25.31 3.46
2041 4743 2.283529 GGACCCAAGAGCACTCGGA 61.284 63.158 4.54 0.00 34.09 4.55
2089 4791 3.446507 GGCGACGGGTCTTGAATTA 57.553 52.632 0.00 0.00 0.00 1.40
2161 4863 1.566018 CCAACTTGGACGGCGAGAAC 61.566 60.000 16.62 0.37 40.96 3.01
2373 5078 2.165641 ACGCTGAAGATCACCACGATTA 59.834 45.455 0.00 0.00 33.17 1.75
2438 5143 7.095439 CCATGTACAGTTTCAGAGTTTCTCTTC 60.095 40.741 0.33 0.00 38.99 2.87
2478 5183 7.148639 CCAACGAAATGTAACGGATCCATATAG 60.149 40.741 13.41 0.00 0.00 1.31
2479 5184 6.647481 CCAACGAAATGTAACGGATCCATATA 59.353 38.462 13.41 3.03 0.00 0.86
2480 5185 5.468746 CCAACGAAATGTAACGGATCCATAT 59.531 40.000 13.41 0.00 0.00 1.78
2481 5186 4.812091 CCAACGAAATGTAACGGATCCATA 59.188 41.667 13.41 0.95 0.00 2.74
2662 5367 4.359706 CGATAAAAAGGCACCCTAAATGC 58.640 43.478 0.00 0.00 42.62 3.56
2663 5368 4.359706 GCGATAAAAAGGCACCCTAAATG 58.640 43.478 0.00 0.00 31.13 2.32
2664 5369 3.066203 CGCGATAAAAAGGCACCCTAAAT 59.934 43.478 0.00 0.00 31.13 1.40
2665 5370 2.420722 CGCGATAAAAAGGCACCCTAAA 59.579 45.455 0.00 0.00 31.13 1.85
2666 5371 2.011222 CGCGATAAAAAGGCACCCTAA 58.989 47.619 0.00 0.00 31.13 2.69
2667 5372 1.207570 TCGCGATAAAAAGGCACCCTA 59.792 47.619 3.71 0.00 31.13 3.53
2668 5373 0.035820 TCGCGATAAAAAGGCACCCT 60.036 50.000 3.71 0.00 33.87 4.34
2669 5374 0.377203 CTCGCGATAAAAAGGCACCC 59.623 55.000 10.36 0.00 0.00 4.61
2670 5375 1.062148 GTCTCGCGATAAAAAGGCACC 59.938 52.381 10.36 0.00 0.00 5.01
2727 5432 2.227036 CCCCTCTCACCTGCCTGTT 61.227 63.158 0.00 0.00 0.00 3.16
2728 5433 2.608988 CCCCTCTCACCTGCCTGT 60.609 66.667 0.00 0.00 0.00 4.00
2729 5434 2.284921 TCCCCTCTCACCTGCCTG 60.285 66.667 0.00 0.00 0.00 4.85
2730 5435 2.040278 CTCCCCTCTCACCTGCCT 59.960 66.667 0.00 0.00 0.00 4.75
2731 5436 3.086600 CCTCCCCTCTCACCTGCC 61.087 72.222 0.00 0.00 0.00 4.85
2732 5437 2.039624 TCCTCCCCTCTCACCTGC 59.960 66.667 0.00 0.00 0.00 4.85
2733 5438 0.396974 CTCTCCTCCCCTCTCACCTG 60.397 65.000 0.00 0.00 0.00 4.00
2734 5439 0.853586 ACTCTCCTCCCCTCTCACCT 60.854 60.000 0.00 0.00 0.00 4.00
2735 5440 0.927767 TACTCTCCTCCCCTCTCACC 59.072 60.000 0.00 0.00 0.00 4.02
2736 5441 2.830651 TTACTCTCCTCCCCTCTCAC 57.169 55.000 0.00 0.00 0.00 3.51
2737 5442 4.033709 CAATTTACTCTCCTCCCCTCTCA 58.966 47.826 0.00 0.00 0.00 3.27
2738 5443 3.181459 GCAATTTACTCTCCTCCCCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
2739 5444 2.774809 GCAATTTACTCTCCTCCCCTCT 59.225 50.000 0.00 0.00 0.00 3.69
2740 5445 2.505819 TGCAATTTACTCTCCTCCCCTC 59.494 50.000 0.00 0.00 0.00 4.30
2741 5446 2.507471 CTGCAATTTACTCTCCTCCCCT 59.493 50.000 0.00 0.00 0.00 4.79
2742 5447 2.505819 TCTGCAATTTACTCTCCTCCCC 59.494 50.000 0.00 0.00 0.00 4.81
2743 5448 3.914426 TCTGCAATTTACTCTCCTCCC 57.086 47.619 0.00 0.00 0.00 4.30
2744 5449 5.106118 GGTTTTCTGCAATTTACTCTCCTCC 60.106 44.000 0.00 0.00 0.00 4.30
2745 5450 5.473504 TGGTTTTCTGCAATTTACTCTCCTC 59.526 40.000 0.00 0.00 0.00 3.71
2746 5451 5.385198 TGGTTTTCTGCAATTTACTCTCCT 58.615 37.500 0.00 0.00 0.00 3.69
2747 5452 5.705609 TGGTTTTCTGCAATTTACTCTCC 57.294 39.130 0.00 0.00 0.00 3.71
2748 5453 6.913170 TGATGGTTTTCTGCAATTTACTCTC 58.087 36.000 0.00 0.00 0.00 3.20
2749 5454 6.491403 ACTGATGGTTTTCTGCAATTTACTCT 59.509 34.615 0.00 0.00 0.00 3.24
2770 5475 4.101114 TGATGACCTAGCCCTTAAACTGA 58.899 43.478 0.00 0.00 0.00 3.41
2819 5524 8.266473 TGTTTACAAGAGAGGTGGTACTTTTTA 58.734 33.333 0.00 0.00 0.00 1.52
2826 5531 7.469456 GCAAAAATGTTTACAAGAGAGGTGGTA 60.469 37.037 0.00 0.00 0.00 3.25
2851 5556 3.090952 ACGAGACTAATCTGCTGATGC 57.909 47.619 6.88 0.00 34.34 3.91
2852 5557 5.105063 TCAAACGAGACTAATCTGCTGATG 58.895 41.667 6.88 0.00 34.34 3.07
2856 5571 4.489810 CACTCAAACGAGACTAATCTGCT 58.510 43.478 0.00 0.00 34.34 4.24
2859 5574 3.057456 ACGCACTCAAACGAGACTAATCT 60.057 43.478 0.00 0.00 38.15 2.40
2877 5592 3.937814 AGATCACCTGTCATAAAACGCA 58.062 40.909 0.00 0.00 0.00 5.24
2895 5610 4.993705 TGTTTACAAGGGAGGTGAAGAT 57.006 40.909 0.00 0.00 0.00 2.40
2896 5611 4.993705 ATGTTTACAAGGGAGGTGAAGA 57.006 40.909 0.00 0.00 0.00 2.87
2898 5613 5.055265 TGAATGTTTACAAGGGAGGTGAA 57.945 39.130 0.00 0.00 0.00 3.18
2899 5614 4.715534 TGAATGTTTACAAGGGAGGTGA 57.284 40.909 0.00 0.00 0.00 4.02
2900 5615 5.391950 CGATTGAATGTTTACAAGGGAGGTG 60.392 44.000 0.00 0.00 0.00 4.00
2901 5616 4.700213 CGATTGAATGTTTACAAGGGAGGT 59.300 41.667 0.00 0.00 0.00 3.85
2902 5617 4.700213 ACGATTGAATGTTTACAAGGGAGG 59.300 41.667 0.00 0.00 0.00 4.30
2903 5618 5.391950 CCACGATTGAATGTTTACAAGGGAG 60.392 44.000 0.00 0.00 0.00 4.30
2904 5619 4.457603 CCACGATTGAATGTTTACAAGGGA 59.542 41.667 0.00 0.00 0.00 4.20
2905 5620 4.217550 ACCACGATTGAATGTTTACAAGGG 59.782 41.667 0.00 0.00 0.00 3.95
2906 5621 5.049060 TCACCACGATTGAATGTTTACAAGG 60.049 40.000 0.00 0.00 0.00 3.61
2907 5622 5.996219 TCACCACGATTGAATGTTTACAAG 58.004 37.500 0.00 0.00 0.00 3.16
2908 5623 6.429692 AGATCACCACGATTGAATGTTTACAA 59.570 34.615 0.00 0.00 33.17 2.41
2909 5624 5.937540 AGATCACCACGATTGAATGTTTACA 59.062 36.000 0.00 0.00 33.17 2.41
2910 5625 6.422776 AGATCACCACGATTGAATGTTTAC 57.577 37.500 0.00 0.00 33.17 2.01
2911 5626 6.652900 TGAAGATCACCACGATTGAATGTTTA 59.347 34.615 0.00 0.00 33.17 2.01
2912 5627 5.473162 TGAAGATCACCACGATTGAATGTTT 59.527 36.000 0.00 0.00 33.17 2.83
2913 5628 5.003160 TGAAGATCACCACGATTGAATGTT 58.997 37.500 0.00 0.00 33.17 2.71
2914 5629 4.393062 GTGAAGATCACCACGATTGAATGT 59.607 41.667 0.00 0.00 41.37 2.71
2915 5630 4.901814 GTGAAGATCACCACGATTGAATG 58.098 43.478 0.00 0.00 41.37 2.67
2927 5642 5.104735 AGTCAAATAGGGAGGTGAAGATCAC 60.105 44.000 1.88 1.88 46.23 3.06
2928 5643 5.032846 AGTCAAATAGGGAGGTGAAGATCA 58.967 41.667 0.00 0.00 0.00 2.92
2929 5644 5.622346 AGTCAAATAGGGAGGTGAAGATC 57.378 43.478 0.00 0.00 0.00 2.75
2930 5645 6.407074 CGTAAGTCAAATAGGGAGGTGAAGAT 60.407 42.308 0.00 0.00 0.00 2.40
2931 5646 5.105473 CGTAAGTCAAATAGGGAGGTGAAGA 60.105 44.000 0.00 0.00 0.00 2.87
2932 5647 5.109903 CGTAAGTCAAATAGGGAGGTGAAG 58.890 45.833 0.00 0.00 0.00 3.02
2933 5648 5.080969 CGTAAGTCAAATAGGGAGGTGAA 57.919 43.478 0.00 0.00 0.00 3.18
2934 5649 4.730949 CGTAAGTCAAATAGGGAGGTGA 57.269 45.455 0.00 0.00 0.00 4.02
2949 5664 6.772078 GCATGAAAAGTTATGCTACGTAAGT 58.228 36.000 0.00 0.00 46.36 2.24
2957 5672 6.040209 TCATTTGGCATGAAAAGTTATGCT 57.960 33.333 8.58 0.00 46.69 3.79
3150 5867 4.473520 CCGATGGTGCGCCCTCTT 62.474 66.667 15.15 0.00 0.00 2.85
3342 6886 2.663196 GTTCCCTACGCAGGCAGT 59.337 61.111 0.00 0.00 41.08 4.40
3343 6887 2.509336 CGTTCCCTACGCAGGCAG 60.509 66.667 0.00 0.00 44.26 4.85
3469 7078 2.787866 CCCTTCCCTCCCCTCTCA 59.212 66.667 0.00 0.00 0.00 3.27
3564 9597 3.181538 CGTTTAAGCGCGTTTATGACAGA 60.182 43.478 16.26 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.