Multiple sequence alignment - TraesCS1D01G279800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G279800 chr1D 100.000 2704 0 0 1 2704 377909514 377912217 0.000000e+00 4994.0
1 TraesCS1D01G279800 chr1D 100.000 2354 0 0 2805 5158 377912318 377914671 0.000000e+00 4348.0
2 TraesCS1D01G279800 chr1B 89.943 2118 108 41 3 2061 505109540 505111611 0.000000e+00 2634.0
3 TraesCS1D01G279800 chr1B 99.011 708 6 1 2805 3512 242732447 242733153 0.000000e+00 1267.0
4 TraesCS1D01G279800 chr1B 88.504 809 54 15 1038 1829 499734308 499733522 0.000000e+00 942.0
5 TraesCS1D01G279800 chr1B 89.427 558 55 3 3984 4538 505112145 505112701 0.000000e+00 701.0
6 TraesCS1D01G279800 chr1B 87.589 282 23 5 4539 4818 505112738 505113009 3.000000e-82 316.0
7 TraesCS1D01G279800 chr1B 86.559 186 16 7 1878 2062 44998219 44998042 4.070000e-46 196.0
8 TraesCS1D01G279800 chr1A 87.889 1833 106 52 305 2062 478450131 478451922 0.000000e+00 2049.0
9 TraesCS1D01G279800 chr1A 93.487 476 25 3 3512 3981 478451918 478452393 0.000000e+00 702.0
10 TraesCS1D01G279800 chr1A 95.017 301 14 1 4019 4319 478452394 478452693 6.050000e-129 472.0
11 TraesCS1D01G279800 chr1A 91.166 283 21 4 4539 4818 478459293 478459574 1.050000e-101 381.0
12 TraesCS1D01G279800 chr1A 88.688 221 22 1 4321 4538 478459036 478459256 3.060000e-67 267.0
13 TraesCS1D01G279800 chr1A 86.383 235 17 8 74 300 478427442 478427669 5.160000e-60 243.0
14 TraesCS1D01G279800 chr1A 88.983 118 11 2 4539 4654 510396902 510397019 1.500000e-30 145.0
15 TraesCS1D01G279800 chrUn 100.000 708 0 0 2805 3512 90978540 90977833 0.000000e+00 1308.0
16 TraesCS1D01G279800 chrUn 99.582 717 1 2 2805 3521 439713205 439712491 0.000000e+00 1306.0
17 TraesCS1D01G279800 chrUn 99.719 712 2 0 2805 3516 439950853 439951564 0.000000e+00 1304.0
18 TraesCS1D01G279800 chrUn 96.615 650 10 6 2062 2703 416864288 416863643 0.000000e+00 1068.0
19 TraesCS1D01G279800 chrUn 96.370 606 13 5 2063 2660 472473120 472473724 0.000000e+00 989.0
20 TraesCS1D01G279800 chrUn 91.837 294 22 2 4865 5158 389910740 389910449 4.810000e-110 409.0
21 TraesCS1D01G279800 chrUn 91.497 294 23 2 4865 5158 390438246 390437955 2.240000e-108 403.0
22 TraesCS1D01G279800 chrUn 86.559 186 16 7 1878 2062 219181503 219181680 4.070000e-46 196.0
23 TraesCS1D01G279800 chrUn 86.559 186 16 7 1878 2062 224087924 224087747 4.070000e-46 196.0
24 TraesCS1D01G279800 chr4B 99.568 695 3 0 2817 3511 85622874 85623568 0.000000e+00 1267.0
25 TraesCS1D01G279800 chr4B 99.568 695 3 0 2817 3511 85630807 85631501 0.000000e+00 1267.0
26 TraesCS1D01G279800 chr4B 89.831 118 9 3 4539 4654 273957709 273957593 1.160000e-31 148.0
27 TraesCS1D01G279800 chr2B 99.137 695 6 0 2817 3511 383848210 383848904 0.000000e+00 1251.0
28 TraesCS1D01G279800 chr2B 97.331 637 12 5 2062 2697 572922447 572921815 0.000000e+00 1077.0
29 TraesCS1D01G279800 chr2B 90.331 393 31 6 3512 3899 772921416 772921026 4.610000e-140 508.0
30 TraesCS1D01G279800 chr2B 90.026 391 33 5 3512 3897 106852879 106853268 7.710000e-138 501.0
31 TraesCS1D01G279800 chr2B 89.831 118 10 2 4539 4654 43019270 43019153 3.220000e-32 150.0
32 TraesCS1D01G279800 chr2B 88.696 115 11 2 4539 4651 1766737 1766623 6.960000e-29 139.0
33 TraesCS1D01G279800 chr6A 98.993 695 5 1 2817 3511 212505329 212504637 0.000000e+00 1243.0
34 TraesCS1D01G279800 chr6A 98.993 695 5 1 2817 3511 212513613 212512921 0.000000e+00 1243.0
35 TraesCS1D01G279800 chr6A 96.296 648 13 7 2062 2703 416398107 416397465 0.000000e+00 1053.0
36 TraesCS1D01G279800 chr7B 99.035 622 4 2 2062 2682 339821233 339820613 0.000000e+00 1114.0
37 TraesCS1D01G279800 chr7B 90.026 391 31 6 3512 3897 697908573 697908960 2.770000e-137 499.0
38 TraesCS1D01G279800 chr7B 88.421 95 8 2 1970 2062 697908484 697908577 1.520000e-20 111.0
39 TraesCS1D01G279800 chr2A 96.615 650 10 6 2062 2703 660672289 660671644 0.000000e+00 1068.0
40 TraesCS1D01G279800 chr2A 91.304 391 28 5 3512 3897 485202232 485202621 3.540000e-146 529.0
41 TraesCS1D01G279800 chr2A 90.793 391 30 5 3512 3897 485222796 485223185 7.660000e-143 518.0
42 TraesCS1D01G279800 chr2A 90.793 391 30 5 3512 3897 687897825 687898214 7.660000e-143 518.0
43 TraesCS1D01G279800 chr2A 88.430 121 12 2 4539 4657 74783175 74783295 1.500000e-30 145.0
44 TraesCS1D01G279800 chr7A 97.373 609 9 5 2063 2665 177145213 177145820 0.000000e+00 1029.0
45 TraesCS1D01G279800 chr7A 97.436 39 1 0 4495 4533 125275891 125275929 3.330000e-07 67.6
46 TraesCS1D01G279800 chr5A 96.870 607 10 5 2062 2662 880690 880087 0.000000e+00 1007.0
47 TraesCS1D01G279800 chr5A 96.854 604 14 5 2062 2662 872236 871635 0.000000e+00 1005.0
48 TraesCS1D01G279800 chr3B 89.428 804 56 12 1041 1829 764841485 764840696 0.000000e+00 987.0
49 TraesCS1D01G279800 chr3B 91.304 391 27 6 3512 3897 757906527 757906915 1.270000e-145 527.0
50 TraesCS1D01G279800 chr5B 91.304 391 28 5 3512 3897 62738214 62737825 3.540000e-146 529.0
51 TraesCS1D01G279800 chr5B 88.136 118 12 2 4539 4654 421543234 421543351 6.960000e-29 139.0
52 TraesCS1D01G279800 chr6D 92.384 302 23 0 4857 5158 430528650 430528349 1.030000e-116 431.0
53 TraesCS1D01G279800 chr3A 93.640 283 18 0 4876 5158 710111151 710111433 1.720000e-114 424.0
54 TraesCS1D01G279800 chr3A 90.852 317 24 4 4842 5158 444719605 444719916 2.220000e-113 420.0
55 TraesCS1D01G279800 chr3A 88.136 118 12 2 4539 4654 19356892 19356775 6.960000e-29 139.0
56 TraesCS1D01G279800 chr3D 93.310 284 19 0 4875 5158 610083324 610083607 2.220000e-113 420.0
57 TraesCS1D01G279800 chr3D 90.385 312 25 3 4850 5157 552422703 552422393 6.220000e-109 405.0
58 TraesCS1D01G279800 chr2D 91.946 298 23 1 4861 5158 37011201 37010905 2.870000e-112 416.0
59 TraesCS1D01G279800 chr2D 92.069 290 23 0 4869 5158 313026314 313026025 4.810000e-110 409.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G279800 chr1D 377909514 377914671 5157 False 4671.000000 4994 100.000000 1 5158 2 chr1D.!!$F1 5157
1 TraesCS1D01G279800 chr1B 242732447 242733153 706 False 1267.000000 1267 99.011000 2805 3512 1 chr1B.!!$F1 707
2 TraesCS1D01G279800 chr1B 505109540 505113009 3469 False 1217.000000 2634 88.986333 3 4818 3 chr1B.!!$F2 4815
3 TraesCS1D01G279800 chr1B 499733522 499734308 786 True 942.000000 942 88.504000 1038 1829 1 chr1B.!!$R2 791
4 TraesCS1D01G279800 chr1A 478450131 478452693 2562 False 1074.333333 2049 92.131000 305 4319 3 chr1A.!!$F3 4014
5 TraesCS1D01G279800 chr1A 478459036 478459574 538 False 324.000000 381 89.927000 4321 4818 2 chr1A.!!$F4 497
6 TraesCS1D01G279800 chrUn 90977833 90978540 707 True 1308.000000 1308 100.000000 2805 3512 1 chrUn.!!$R1 707
7 TraesCS1D01G279800 chrUn 439712491 439713205 714 True 1306.000000 1306 99.582000 2805 3521 1 chrUn.!!$R6 716
8 TraesCS1D01G279800 chrUn 439950853 439951564 711 False 1304.000000 1304 99.719000 2805 3516 1 chrUn.!!$F2 711
9 TraesCS1D01G279800 chrUn 416863643 416864288 645 True 1068.000000 1068 96.615000 2062 2703 1 chrUn.!!$R5 641
10 TraesCS1D01G279800 chrUn 472473120 472473724 604 False 989.000000 989 96.370000 2063 2660 1 chrUn.!!$F3 597
11 TraesCS1D01G279800 chr4B 85622874 85623568 694 False 1267.000000 1267 99.568000 2817 3511 1 chr4B.!!$F1 694
12 TraesCS1D01G279800 chr4B 85630807 85631501 694 False 1267.000000 1267 99.568000 2817 3511 1 chr4B.!!$F2 694
13 TraesCS1D01G279800 chr2B 383848210 383848904 694 False 1251.000000 1251 99.137000 2817 3511 1 chr2B.!!$F2 694
14 TraesCS1D01G279800 chr2B 572921815 572922447 632 True 1077.000000 1077 97.331000 2062 2697 1 chr2B.!!$R3 635
15 TraesCS1D01G279800 chr6A 212504637 212505329 692 True 1243.000000 1243 98.993000 2817 3511 1 chr6A.!!$R1 694
16 TraesCS1D01G279800 chr6A 212512921 212513613 692 True 1243.000000 1243 98.993000 2817 3511 1 chr6A.!!$R2 694
17 TraesCS1D01G279800 chr6A 416397465 416398107 642 True 1053.000000 1053 96.296000 2062 2703 1 chr6A.!!$R3 641
18 TraesCS1D01G279800 chr7B 339820613 339821233 620 True 1114.000000 1114 99.035000 2062 2682 1 chr7B.!!$R1 620
19 TraesCS1D01G279800 chr2A 660671644 660672289 645 True 1068.000000 1068 96.615000 2062 2703 1 chr2A.!!$R1 641
20 TraesCS1D01G279800 chr7A 177145213 177145820 607 False 1029.000000 1029 97.373000 2063 2665 1 chr7A.!!$F2 602
21 TraesCS1D01G279800 chr5A 880087 880690 603 True 1007.000000 1007 96.870000 2062 2662 1 chr5A.!!$R2 600
22 TraesCS1D01G279800 chr5A 871635 872236 601 True 1005.000000 1005 96.854000 2062 2662 1 chr5A.!!$R1 600
23 TraesCS1D01G279800 chr3B 764840696 764841485 789 True 987.000000 987 89.428000 1041 1829 1 chr3B.!!$R1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 288 0.093705 GCTGTGCGTCGAAATGAGTC 59.906 55.000 0.00 0.00 0.00 3.36 F
403 410 0.108329 AGCTAACGTTGGACGATGGG 60.108 55.000 16.60 0.00 46.05 4.00 F
1210 1269 0.248498 CCGTAAGCGCTCGATCTCAA 60.248 55.000 18.92 0.00 36.67 3.02 F
1455 1533 0.600557 GATCGATCGAGCATGGAGGT 59.399 55.000 27.18 5.07 0.00 3.85 F
2024 2131 1.135527 CGCCCTATTGTCCGTTGTCTA 59.864 52.381 0.00 0.00 0.00 2.59 F
3772 4006 0.537188 GATGAGTGTCCACGTCCCAT 59.463 55.000 0.00 0.00 36.20 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1475 0.033504 AACACCTCCCGCGCATATAG 59.966 55.000 8.75 0.00 0.00 1.31 R
1634 1718 1.135603 CACATGTCCGGAGCAACATTG 60.136 52.381 3.06 4.23 33.92 2.82 R
2033 2140 2.222027 CCCAGGTAGGCGATCATTTTC 58.778 52.381 0.00 0.00 35.39 2.29 R
3612 3741 0.530744 CTGTAGCTGCCGACCAACTA 59.469 55.000 0.00 0.00 0.00 2.24 R
4100 4335 0.701303 CGTTCGACAGCACGTAGTTC 59.299 55.000 0.00 0.00 41.61 3.01 R
5078 5362 0.107312 CTGCTAGCTGGTCATGCCTT 60.107 55.000 17.23 0.00 38.35 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 114 1.344953 TAGTCCCTTCCGGCATGCAT 61.345 55.000 21.36 0.00 0.00 3.96
244 250 3.058432 CCCGATGAATGCAGATCATGAAC 60.058 47.826 19.28 0.00 37.64 3.18
256 262 4.338400 CAGATCATGAACAGCCAACATCAT 59.662 41.667 0.00 0.00 32.94 2.45
272 278 0.179127 TCATAGCTGAGCTGTGCGTC 60.179 55.000 24.02 0.00 45.20 5.19
273 279 1.226802 ATAGCTGAGCTGTGCGTCG 60.227 57.895 18.79 0.00 40.10 5.12
277 283 1.630244 GCTGAGCTGTGCGTCGAAAT 61.630 55.000 0.00 0.00 0.00 2.17
282 288 0.093705 GCTGTGCGTCGAAATGAGTC 59.906 55.000 0.00 0.00 0.00 3.36
284 290 1.057361 GTGCGTCGAAATGAGTCGC 59.943 57.895 7.30 7.30 43.98 5.19
292 298 2.163613 TCGAAATGAGTCGCTGCTAGAA 59.836 45.455 0.00 0.00 40.88 2.10
293 299 2.923655 CGAAATGAGTCGCTGCTAGAAA 59.076 45.455 0.00 0.00 33.66 2.52
305 311 4.201822 CGCTGCTAGAAACCATAAAAGGAC 60.202 45.833 0.00 0.00 0.00 3.85
307 313 4.258543 TGCTAGAAACCATAAAAGGACGG 58.741 43.478 0.00 0.00 0.00 4.79
403 410 0.108329 AGCTAACGTTGGACGATGGG 60.108 55.000 16.60 0.00 46.05 4.00
494 506 1.237285 CCTTTGCCCAGTCTCAACCG 61.237 60.000 0.00 0.00 0.00 4.44
561 573 1.749609 GACGCGCTCAACGTATTCCC 61.750 60.000 5.73 0.00 45.24 3.97
644 664 2.920912 TCGAGGTCGGGCCAAACT 60.921 61.111 4.39 0.00 40.61 2.66
657 677 3.605664 AAACTGCCAAGGCGCACC 61.606 61.111 10.83 0.00 45.51 5.01
738 758 1.488705 AAGATTCCAGTGCACGGGGA 61.489 55.000 31.77 26.51 0.00 4.81
853 907 1.725169 CCTCCCACCCAAAACCCTCA 61.725 60.000 0.00 0.00 0.00 3.86
899 953 1.912417 AAGTACCTGTCGCTCTCTGT 58.088 50.000 0.00 0.00 0.00 3.41
920 979 1.373435 CCTCGCCCACCAAGTACAA 59.627 57.895 0.00 0.00 0.00 2.41
928 987 3.686016 CCCACCAAGTACAAGCATTACT 58.314 45.455 0.00 0.00 0.00 2.24
1059 1118 1.271840 GGGTGGCCATGGACTACTCA 61.272 60.000 21.02 0.00 0.00 3.41
1205 1264 1.286260 GATCCCGTAAGCGCTCGAT 59.714 57.895 18.92 11.02 36.67 3.59
1206 1265 0.729816 GATCCCGTAAGCGCTCGATC 60.730 60.000 18.92 15.22 36.67 3.69
1207 1266 1.173444 ATCCCGTAAGCGCTCGATCT 61.173 55.000 18.92 1.62 36.67 2.75
1208 1267 1.370657 CCCGTAAGCGCTCGATCTC 60.371 63.158 18.92 2.35 36.67 2.75
1209 1268 1.355563 CCGTAAGCGCTCGATCTCA 59.644 57.895 18.92 0.00 36.67 3.27
1210 1269 0.248498 CCGTAAGCGCTCGATCTCAA 60.248 55.000 18.92 0.00 36.67 3.02
1211 1270 1.545759 CGTAAGCGCTCGATCTCAAA 58.454 50.000 12.06 0.00 0.00 2.69
1212 1271 1.253034 CGTAAGCGCTCGATCTCAAAC 59.747 52.381 12.06 0.00 0.00 2.93
1213 1272 2.531206 GTAAGCGCTCGATCTCAAACT 58.469 47.619 12.06 0.00 0.00 2.66
1214 1273 2.941453 AAGCGCTCGATCTCAAACTA 57.059 45.000 12.06 0.00 0.00 2.24
1215 1274 2.941453 AGCGCTCGATCTCAAACTAA 57.059 45.000 2.64 0.00 0.00 2.24
1219 1278 1.588861 GCTCGATCTCAAACTAACGCC 59.411 52.381 0.00 0.00 0.00 5.68
1238 1308 1.202463 CCCAGTTCGCTTCGATCTCAT 60.202 52.381 0.00 0.00 34.32 2.90
1325 1399 1.918609 GTGATGAAGAACTACGGCGTC 59.081 52.381 19.21 0.93 0.00 5.19
1385 1459 2.659897 CGCCAGCTCGAGGTATGC 60.660 66.667 18.15 20.40 0.00 3.14
1455 1533 0.600557 GATCGATCGAGCATGGAGGT 59.399 55.000 27.18 5.07 0.00 3.85
1624 1708 5.280368 CCATCCAGAGGTACGATACTACCTA 60.280 48.000 2.65 0.00 45.67 3.08
1625 1709 5.220710 TCCAGAGGTACGATACTACCTAC 57.779 47.826 2.65 0.00 45.67 3.18
1626 1710 4.904251 TCCAGAGGTACGATACTACCTACT 59.096 45.833 2.65 0.85 45.67 2.57
1627 1711 4.996122 CCAGAGGTACGATACTACCTACTG 59.004 50.000 15.12 15.12 45.67 2.74
1633 1717 2.871022 ACGATACTACCTACTGCTGTCG 59.129 50.000 0.00 0.00 0.00 4.35
1634 1718 2.349627 CGATACTACCTACTGCTGTCGC 60.350 54.545 0.00 0.00 0.00 5.19
1698 1782 2.478746 CACGAAATCGCCGGTTGG 59.521 61.111 1.90 0.00 44.43 3.77
1787 1888 4.491676 ACATTGCTTGATTCAAGATGCAC 58.508 39.130 26.72 11.27 43.42 4.57
1789 1890 4.587584 TTGCTTGATTCAAGATGCACAA 57.412 36.364 26.72 17.76 43.42 3.33
1870 1974 2.295349 GGATCGATTGGCTGCATCATTT 59.705 45.455 0.00 0.00 0.00 2.32
1904 2008 4.094294 GGCGCACTATGACTTAAATCACAA 59.906 41.667 10.83 0.00 0.00 3.33
2016 2123 1.160137 GCATGATCGCCCTATTGTCC 58.840 55.000 0.00 0.00 0.00 4.02
2024 2131 1.135527 CGCCCTATTGTCCGTTGTCTA 59.864 52.381 0.00 0.00 0.00 2.59
2025 2132 2.223971 CGCCCTATTGTCCGTTGTCTAT 60.224 50.000 0.00 0.00 0.00 1.98
2026 2133 3.005050 CGCCCTATTGTCCGTTGTCTATA 59.995 47.826 0.00 0.00 0.00 1.31
2027 2134 4.500205 CGCCCTATTGTCCGTTGTCTATAA 60.500 45.833 0.00 0.00 0.00 0.98
2028 2135 4.989168 GCCCTATTGTCCGTTGTCTATAAG 59.011 45.833 0.00 0.00 0.00 1.73
2029 2136 5.221382 GCCCTATTGTCCGTTGTCTATAAGA 60.221 44.000 0.00 0.00 0.00 2.10
2033 2140 7.863375 CCTATTGTCCGTTGTCTATAAGAAGAG 59.137 40.741 0.00 0.00 0.00 2.85
2037 2144 7.663827 TGTCCGTTGTCTATAAGAAGAGAAAA 58.336 34.615 0.00 0.00 31.31 2.29
2516 2639 3.682858 ACAGAACTAACACACACACACAC 59.317 43.478 0.00 0.00 0.00 3.82
3625 3754 4.547532 GTGTAGATATAGTTGGTCGGCAG 58.452 47.826 0.00 0.00 0.00 4.85
3655 3784 4.184629 GTTTGTGCTATTCGAGATCCAGT 58.815 43.478 0.00 0.00 0.00 4.00
3772 4006 0.537188 GATGAGTGTCCACGTCCCAT 59.463 55.000 0.00 0.00 36.20 4.00
3775 4009 1.274167 TGAGTGTCCACGTCCCATTAC 59.726 52.381 0.00 0.00 36.20 1.89
3860 4095 3.598019 ATGTCAATGCATTTCACACCC 57.402 42.857 18.90 1.42 0.00 4.61
3966 4201 9.338622 GTATTTATTGATAACTGTAGGCTTGGT 57.661 33.333 0.00 0.00 0.00 3.67
3981 4216 5.849510 AGGCTTGGTTTTGGTTTATGTTAC 58.150 37.500 0.00 0.00 0.00 2.50
3982 4217 4.992319 GGCTTGGTTTTGGTTTATGTTACC 59.008 41.667 0.00 0.00 36.17 2.85
3983 4218 5.221561 GGCTTGGTTTTGGTTTATGTTACCT 60.222 40.000 0.00 0.00 36.60 3.08
3984 4219 6.015265 GGCTTGGTTTTGGTTTATGTTACCTA 60.015 38.462 0.00 0.00 36.60 3.08
3985 4220 6.864685 GCTTGGTTTTGGTTTATGTTACCTAC 59.135 38.462 0.00 0.00 36.60 3.18
3986 4221 6.897706 TGGTTTTGGTTTATGTTACCTACC 57.102 37.500 0.00 0.00 36.60 3.18
3987 4222 6.371278 TGGTTTTGGTTTATGTTACCTACCA 58.629 36.000 0.00 0.00 38.63 3.25
3988 4223 6.490721 TGGTTTTGGTTTATGTTACCTACCAG 59.509 38.462 0.00 0.00 39.80 4.00
3989 4224 6.491062 GGTTTTGGTTTATGTTACCTACCAGT 59.509 38.462 0.00 0.00 39.80 4.00
3990 4225 7.665145 GGTTTTGGTTTATGTTACCTACCAGTA 59.335 37.037 0.00 0.00 39.80 2.74
3991 4226 9.065798 GTTTTGGTTTATGTTACCTACCAGTAA 57.934 33.333 0.00 0.00 39.80 2.24
3992 4227 8.851541 TTTGGTTTATGTTACCTACCAGTAAG 57.148 34.615 0.00 0.00 39.80 2.34
3993 4228 6.408869 TGGTTTATGTTACCTACCAGTAAGC 58.591 40.000 0.00 0.00 36.60 3.09
4000 4235 3.247006 ACCTACCAGTAAGCGAACATG 57.753 47.619 0.00 0.00 0.00 3.21
4006 4241 2.926200 CCAGTAAGCGAACATGTGAGAG 59.074 50.000 0.00 0.00 0.00 3.20
4007 4242 3.367395 CCAGTAAGCGAACATGTGAGAGA 60.367 47.826 0.00 0.00 0.00 3.10
4010 4245 4.926238 AGTAAGCGAACATGTGAGAGAAAG 59.074 41.667 0.00 0.00 0.00 2.62
4015 4250 3.063180 CGAACATGTGAGAGAAAGATGGC 59.937 47.826 0.00 0.00 0.00 4.40
4056 4291 0.798776 CACATTTCACTGACGCCCTC 59.201 55.000 0.00 0.00 0.00 4.30
4100 4335 0.319555 TTCTTCTGGGAAGCGTGACG 60.320 55.000 0.00 0.00 0.00 4.35
4170 4405 2.522638 CGTTAGGTTCGCCATCGGC 61.523 63.158 0.00 0.00 46.75 5.54
4274 4509 1.068127 GCAGCCTTGGCAGATTATTGG 59.932 52.381 14.54 0.00 0.00 3.16
4277 4512 1.339291 GCCTTGGCAGATTATTGGAGC 59.661 52.381 6.79 0.00 0.00 4.70
4324 4559 9.177608 TGGATTCAAATTCAGTAAAGTATCTGG 57.822 33.333 0.00 0.00 33.13 3.86
4328 4563 8.579850 TCAAATTCAGTAAAGTATCTGGCAAT 57.420 30.769 0.00 0.00 33.13 3.56
4356 4591 2.112297 GTGCCTTGTTCGGGGACA 59.888 61.111 0.00 0.00 43.28 4.02
4361 4596 1.562672 CCTTGTTCGGGGACAGGGAT 61.563 60.000 2.14 0.00 46.53 3.85
4381 4616 5.537674 GGGATGACCAAATGATTTGCTCTAT 59.462 40.000 12.26 5.44 39.31 1.98
4411 4646 9.882996 CATATTGATTAGCAAACATATTCGTGT 57.117 29.630 0.00 0.00 40.48 4.49
4444 4679 0.814010 AAACAAACTCTCGCGCACCT 60.814 50.000 8.75 0.00 0.00 4.00
4445 4680 0.032952 AACAAACTCTCGCGCACCTA 59.967 50.000 8.75 0.00 0.00 3.08
4458 4693 4.049186 CGCGCACCTATAAGAGTATGTTT 58.951 43.478 8.75 0.00 0.00 2.83
4459 4694 4.506654 CGCGCACCTATAAGAGTATGTTTT 59.493 41.667 8.75 0.00 0.00 2.43
4474 4712 9.569122 AGAGTATGTTTTGTTGGTATAAGTGTT 57.431 29.630 0.00 0.00 0.00 3.32
4480 4718 8.132362 TGTTTTGTTGGTATAAGTGTTCATGTC 58.868 33.333 0.00 0.00 0.00 3.06
4487 4725 2.645838 AAGTGTTCATGTCAGCACCT 57.354 45.000 0.00 0.00 32.75 4.00
4550 4824 5.796424 ATGTTCAAGATTGCTTCAGGTTT 57.204 34.783 0.00 0.00 30.14 3.27
4551 4825 5.596836 TGTTCAAGATTGCTTCAGGTTTT 57.403 34.783 0.00 0.00 30.14 2.43
4552 4826 6.707440 TGTTCAAGATTGCTTCAGGTTTTA 57.293 33.333 0.00 0.00 30.14 1.52
4553 4827 6.503524 TGTTCAAGATTGCTTCAGGTTTTAC 58.496 36.000 0.00 0.00 30.14 2.01
4554 4828 5.356882 TCAAGATTGCTTCAGGTTTTACG 57.643 39.130 0.00 0.00 30.14 3.18
4555 4829 5.060506 TCAAGATTGCTTCAGGTTTTACGA 58.939 37.500 0.00 0.00 30.14 3.43
4562 4838 6.325919 TGCTTCAGGTTTTACGATTCATTT 57.674 33.333 0.00 0.00 0.00 2.32
4593 4869 8.970020 TCTTCTTTTATTATGTGCCATGTCATT 58.030 29.630 0.00 0.00 0.00 2.57
4610 4886 7.445402 CCATGTCATTAAAATAGTCTAGGTGGG 59.555 40.741 0.00 0.00 0.00 4.61
4702 4979 1.014044 CGTCGATGGTGGTCACTTGG 61.014 60.000 0.00 0.00 0.00 3.61
4713 4990 4.853468 TGGTCACTTGGCCATCTATTTA 57.147 40.909 6.09 0.00 46.36 1.40
4714 4991 4.523083 TGGTCACTTGGCCATCTATTTAC 58.477 43.478 6.09 0.00 46.36 2.01
4715 4992 3.560068 GGTCACTTGGCCATCTATTTACG 59.440 47.826 6.09 0.00 40.23 3.18
4716 4993 4.439057 GTCACTTGGCCATCTATTTACGA 58.561 43.478 6.09 0.00 0.00 3.43
4717 4994 4.270325 GTCACTTGGCCATCTATTTACGAC 59.730 45.833 6.09 0.00 0.00 4.34
4718 4995 4.081365 TCACTTGGCCATCTATTTACGACA 60.081 41.667 6.09 0.00 0.00 4.35
4762 5045 5.705441 GGTGAGTTTGGTCATCACAATCTAA 59.295 40.000 6.86 0.00 44.08 2.10
4768 5052 7.448161 AGTTTGGTCATCACAATCTAACATGAA 59.552 33.333 0.00 0.00 0.00 2.57
4771 5055 6.372381 TGGTCATCACAATCTAACATGAACAG 59.628 38.462 0.00 0.00 36.48 3.16
4800 5084 9.884636 TGTATAATATAAACATGGCTAAGCGAT 57.115 29.630 0.00 0.00 0.00 4.58
4820 5104 9.561069 AAGCGATAATTATAACATGAGGTTTCT 57.439 29.630 0.00 0.00 40.96 2.52
4821 5105 8.993121 AGCGATAATTATAACATGAGGTTTCTG 58.007 33.333 0.00 0.00 40.96 3.02
4822 5106 8.230486 GCGATAATTATAACATGAGGTTTCTGG 58.770 37.037 0.00 0.00 40.96 3.86
4823 5107 9.273016 CGATAATTATAACATGAGGTTTCTGGT 57.727 33.333 0.00 0.00 40.96 4.00
4825 5109 7.645058 AATTATAACATGAGGTTTCTGGTGG 57.355 36.000 0.00 0.00 40.96 4.61
4826 5110 2.292828 AACATGAGGTTTCTGGTGGG 57.707 50.000 0.00 0.00 35.82 4.61
4827 5111 0.251341 ACATGAGGTTTCTGGTGGGC 60.251 55.000 0.00 0.00 0.00 5.36
4828 5112 0.038744 CATGAGGTTTCTGGTGGGCT 59.961 55.000 0.00 0.00 0.00 5.19
4829 5113 0.038744 ATGAGGTTTCTGGTGGGCTG 59.961 55.000 0.00 0.00 0.00 4.85
4830 5114 1.059584 TGAGGTTTCTGGTGGGCTGA 61.060 55.000 0.00 0.00 0.00 4.26
4831 5115 0.322008 GAGGTTTCTGGTGGGCTGAG 60.322 60.000 0.00 0.00 0.00 3.35
4832 5116 1.303643 GGTTTCTGGTGGGCTGAGG 60.304 63.158 0.00 0.00 0.00 3.86
4833 5117 1.761174 GTTTCTGGTGGGCTGAGGA 59.239 57.895 0.00 0.00 0.00 3.71
4834 5118 0.329596 GTTTCTGGTGGGCTGAGGAT 59.670 55.000 0.00 0.00 0.00 3.24
4835 5119 1.559682 GTTTCTGGTGGGCTGAGGATA 59.440 52.381 0.00 0.00 0.00 2.59
4836 5120 1.204146 TTCTGGTGGGCTGAGGATAC 58.796 55.000 0.00 0.00 0.00 2.24
4837 5121 0.691078 TCTGGTGGGCTGAGGATACC 60.691 60.000 0.00 0.00 37.17 2.73
4838 5122 0.982852 CTGGTGGGCTGAGGATACCA 60.983 60.000 0.00 0.00 38.98 3.25
4840 5124 1.527370 GTGGGCTGAGGATACCACC 59.473 63.158 0.00 0.00 45.85 4.61
4841 5125 2.063979 TGGGCTGAGGATACCACCG 61.064 63.158 0.00 0.00 34.73 4.94
4842 5126 2.109181 GGCTGAGGATACCACCGC 59.891 66.667 0.00 0.00 34.73 5.68
4843 5127 2.109181 GCTGAGGATACCACCGCC 59.891 66.667 0.00 0.00 34.73 6.13
4844 5128 2.822399 CTGAGGATACCACCGCCC 59.178 66.667 0.00 0.00 34.73 6.13
4845 5129 1.762460 CTGAGGATACCACCGCCCT 60.762 63.158 0.00 0.00 34.73 5.19
4846 5130 1.749334 CTGAGGATACCACCGCCCTC 61.749 65.000 0.00 0.00 44.08 4.30
4847 5131 2.446036 AGGATACCACCGCCCTCC 60.446 66.667 0.00 0.00 34.73 4.30
4848 5132 2.446036 GGATACCACCGCCCTCCT 60.446 66.667 0.00 0.00 0.00 3.69
4849 5133 2.508751 GGATACCACCGCCCTCCTC 61.509 68.421 0.00 0.00 0.00 3.71
4850 5134 2.446036 ATACCACCGCCCTCCTCC 60.446 66.667 0.00 0.00 0.00 4.30
4851 5135 2.948801 GATACCACCGCCCTCCTCCT 62.949 65.000 0.00 0.00 0.00 3.69
4852 5136 2.948801 ATACCACCGCCCTCCTCCTC 62.949 65.000 0.00 0.00 0.00 3.71
4853 5137 4.787280 CCACCGCCCTCCTCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
4854 5138 3.151022 CACCGCCCTCCTCCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
4855 5139 4.824515 ACCGCCCTCCTCCTCTCG 62.825 72.222 0.00 0.00 0.00 4.04
4859 5143 2.440430 CCCTCCTCCTCTCGCGAA 60.440 66.667 11.33 0.02 0.00 4.70
4860 5144 2.052690 CCCTCCTCCTCTCGCGAAA 61.053 63.158 11.33 0.00 0.00 3.46
4861 5145 1.139947 CCTCCTCCTCTCGCGAAAC 59.860 63.158 11.33 0.00 0.00 2.78
4862 5146 1.139947 CTCCTCCTCTCGCGAAACC 59.860 63.158 11.33 0.00 0.00 3.27
4863 5147 1.595993 CTCCTCCTCTCGCGAAACCA 61.596 60.000 11.33 0.00 0.00 3.67
4864 5148 1.446272 CCTCCTCTCGCGAAACCAC 60.446 63.158 11.33 0.00 0.00 4.16
4865 5149 1.446272 CTCCTCTCGCGAAACCACC 60.446 63.158 11.33 0.00 0.00 4.61
4866 5150 1.878656 CTCCTCTCGCGAAACCACCT 61.879 60.000 11.33 0.00 0.00 4.00
4867 5151 1.446272 CCTCTCGCGAAACCACCTC 60.446 63.158 11.33 0.00 0.00 3.85
4868 5152 1.446272 CTCTCGCGAAACCACCTCC 60.446 63.158 11.33 0.00 0.00 4.30
4869 5153 1.878656 CTCTCGCGAAACCACCTCCT 61.879 60.000 11.33 0.00 0.00 3.69
4870 5154 1.446272 CTCGCGAAACCACCTCCTC 60.446 63.158 11.33 0.00 0.00 3.71
4871 5155 1.878656 CTCGCGAAACCACCTCCTCT 61.879 60.000 11.33 0.00 0.00 3.69
4872 5156 1.446272 CGCGAAACCACCTCCTCTC 60.446 63.158 0.00 0.00 0.00 3.20
4873 5157 1.446272 GCGAAACCACCTCCTCTCG 60.446 63.158 0.00 0.00 0.00 4.04
4874 5158 1.446272 CGAAACCACCTCCTCTCGC 60.446 63.158 0.00 0.00 0.00 5.03
4875 5159 1.446272 GAAACCACCTCCTCTCGCG 60.446 63.158 0.00 0.00 0.00 5.87
4876 5160 1.874345 GAAACCACCTCCTCTCGCGA 61.874 60.000 9.26 9.26 0.00 5.87
4877 5161 2.156051 AAACCACCTCCTCTCGCGAC 62.156 60.000 3.71 0.00 0.00 5.19
4878 5162 3.827898 CCACCTCCTCTCGCGACC 61.828 72.222 3.71 0.00 0.00 4.79
4879 5163 3.827898 CACCTCCTCTCGCGACCC 61.828 72.222 3.71 0.00 0.00 4.46
4916 5200 2.686106 GGTGGCGGAGGAACCCTA 60.686 66.667 0.00 0.00 31.76 3.53
4917 5201 2.732619 GGTGGCGGAGGAACCCTAG 61.733 68.421 0.00 0.00 31.76 3.02
4918 5202 3.081409 TGGCGGAGGAACCCTAGC 61.081 66.667 0.00 0.00 36.88 3.42
4919 5203 2.764547 GGCGGAGGAACCCTAGCT 60.765 66.667 11.04 0.00 37.47 3.32
4920 5204 2.501610 GCGGAGGAACCCTAGCTG 59.498 66.667 0.00 0.00 35.47 4.24
4921 5205 2.501610 CGGAGGAACCCTAGCTGC 59.498 66.667 0.00 0.00 31.76 5.25
4922 5206 2.501610 GGAGGAACCCTAGCTGCG 59.498 66.667 0.00 0.00 31.76 5.18
4923 5207 2.202946 GAGGAACCCTAGCTGCGC 60.203 66.667 0.00 0.00 31.76 6.09
4924 5208 3.741830 GAGGAACCCTAGCTGCGCC 62.742 68.421 4.18 0.00 31.76 6.53
4949 5233 2.774351 CCCCCTCCCCACCTCATC 60.774 72.222 0.00 0.00 0.00 2.92
4950 5234 2.774351 CCCCTCCCCACCTCATCC 60.774 72.222 0.00 0.00 0.00 3.51
4951 5235 2.774351 CCCTCCCCACCTCATCCC 60.774 72.222 0.00 0.00 0.00 3.85
4952 5236 2.042762 CCTCCCCACCTCATCCCA 59.957 66.667 0.00 0.00 0.00 4.37
4953 5237 2.378634 CCTCCCCACCTCATCCCAC 61.379 68.421 0.00 0.00 0.00 4.61
4954 5238 2.286121 TCCCCACCTCATCCCACC 60.286 66.667 0.00 0.00 0.00 4.61
4955 5239 2.286425 CCCCACCTCATCCCACCT 60.286 66.667 0.00 0.00 0.00 4.00
4956 5240 2.378634 CCCCACCTCATCCCACCTC 61.379 68.421 0.00 0.00 0.00 3.85
4957 5241 2.378634 CCCACCTCATCCCACCTCC 61.379 68.421 0.00 0.00 0.00 4.30
4958 5242 1.307343 CCACCTCATCCCACCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
4959 5243 0.916358 CCACCTCATCCCACCTCCTT 60.916 60.000 0.00 0.00 0.00 3.36
4960 5244 0.254178 CACCTCATCCCACCTCCTTG 59.746 60.000 0.00 0.00 0.00 3.61
4961 5245 1.225704 CCTCATCCCACCTCCTTGC 59.774 63.158 0.00 0.00 0.00 4.01
4962 5246 1.225704 CTCATCCCACCTCCTTGCC 59.774 63.158 0.00 0.00 0.00 4.52
4963 5247 2.124570 CATCCCACCTCCTTGCCG 60.125 66.667 0.00 0.00 0.00 5.69
4964 5248 4.115199 ATCCCACCTCCTTGCCGC 62.115 66.667 0.00 0.00 0.00 6.53
5036 5320 2.747855 CCTCGGTTGCCCTGCTTC 60.748 66.667 0.00 0.00 0.00 3.86
5037 5321 2.348998 CTCGGTTGCCCTGCTTCT 59.651 61.111 0.00 0.00 0.00 2.85
5038 5322 2.032528 TCGGTTGCCCTGCTTCTG 59.967 61.111 0.00 0.00 0.00 3.02
5039 5323 3.741476 CGGTTGCCCTGCTTCTGC 61.741 66.667 0.00 0.00 40.20 4.26
5040 5324 3.741476 GGTTGCCCTGCTTCTGCG 61.741 66.667 0.00 0.00 43.34 5.18
5041 5325 2.980233 GTTGCCCTGCTTCTGCGT 60.980 61.111 0.00 0.00 43.34 5.24
5042 5326 2.979676 TTGCCCTGCTTCTGCGTG 60.980 61.111 0.00 0.00 43.34 5.34
5046 5330 4.020617 CCTGCTTCTGCGTGGGGA 62.021 66.667 0.00 0.00 43.34 4.81
5047 5331 2.032528 CTGCTTCTGCGTGGGGAA 59.967 61.111 0.00 0.00 43.34 3.97
5048 5332 2.281484 TGCTTCTGCGTGGGGAAC 60.281 61.111 0.00 0.00 43.34 3.62
5061 5345 3.231298 GGAACCCCGGATCTGGAG 58.769 66.667 23.02 11.90 0.00 3.86
5062 5346 2.506472 GAACCCCGGATCTGGAGC 59.494 66.667 23.02 4.29 0.00 4.70
5063 5347 3.447025 GAACCCCGGATCTGGAGCG 62.447 68.421 23.02 11.04 0.00 5.03
5080 5364 3.830192 GGCGGCTCCATTGGCAAG 61.830 66.667 5.96 0.00 34.01 4.01
5081 5365 3.830192 GCGGCTCCATTGGCAAGG 61.830 66.667 5.96 5.28 0.00 3.61
5082 5366 3.830192 CGGCTCCATTGGCAAGGC 61.830 66.667 6.33 3.22 0.00 4.35
5083 5367 2.681064 GGCTCCATTGGCAAGGCA 60.681 61.111 6.33 0.00 35.78 4.75
5084 5368 2.062177 GGCTCCATTGGCAAGGCAT 61.062 57.895 6.33 0.00 35.78 4.40
5085 5369 1.143183 GCTCCATTGGCAAGGCATG 59.857 57.895 6.33 0.00 0.00 4.06
5086 5370 1.324740 GCTCCATTGGCAAGGCATGA 61.325 55.000 6.33 0.00 0.00 3.07
5087 5371 0.458669 CTCCATTGGCAAGGCATGAC 59.541 55.000 6.33 0.00 37.68 3.06
5088 5372 0.971959 TCCATTGGCAAGGCATGACC 60.972 55.000 6.33 0.00 35.52 4.02
5089 5373 1.259142 CCATTGGCAAGGCATGACCA 61.259 55.000 6.33 0.00 43.14 4.02
5090 5374 0.174845 CATTGGCAAGGCATGACCAG 59.825 55.000 5.96 0.00 43.14 4.00
5091 5375 1.610554 ATTGGCAAGGCATGACCAGC 61.611 55.000 5.96 4.28 43.14 4.85
5092 5376 2.362120 GGCAAGGCATGACCAGCT 60.362 61.111 12.08 0.00 43.14 4.24
5093 5377 1.077501 GGCAAGGCATGACCAGCTA 60.078 57.895 12.08 0.00 43.14 3.32
5094 5378 1.099879 GGCAAGGCATGACCAGCTAG 61.100 60.000 12.08 0.00 43.14 3.42
5095 5379 1.722636 GCAAGGCATGACCAGCTAGC 61.723 60.000 6.62 6.62 43.14 3.42
5096 5380 0.393402 CAAGGCATGACCAGCTAGCA 60.393 55.000 18.83 0.00 43.14 3.49
5097 5381 0.107312 AAGGCATGACCAGCTAGCAG 60.107 55.000 18.83 9.15 43.14 4.24
5098 5382 2.185494 GGCATGACCAGCTAGCAGC 61.185 63.158 18.83 8.50 42.84 5.25
5099 5383 2.185494 GCATGACCAGCTAGCAGCC 61.185 63.158 18.83 0.29 43.77 4.85
5100 5384 1.886313 CATGACCAGCTAGCAGCCG 60.886 63.158 18.83 3.12 43.77 5.52
5101 5385 2.362369 ATGACCAGCTAGCAGCCGT 61.362 57.895 18.83 6.60 43.77 5.68
5102 5386 2.510238 GACCAGCTAGCAGCCGTG 60.510 66.667 18.83 5.67 43.77 4.94
5116 5400 4.457496 CGTGCAGGCGGTGGATCT 62.457 66.667 0.00 0.00 0.00 2.75
5117 5401 2.821366 GTGCAGGCGGTGGATCTG 60.821 66.667 0.00 0.00 0.00 2.90
5118 5402 4.100084 TGCAGGCGGTGGATCTGG 62.100 66.667 0.00 0.00 0.00 3.86
5119 5403 4.101448 GCAGGCGGTGGATCTGGT 62.101 66.667 0.00 0.00 0.00 4.00
5120 5404 2.124983 CAGGCGGTGGATCTGGTG 60.125 66.667 0.00 0.00 0.00 4.17
5121 5405 2.607750 AGGCGGTGGATCTGGTGT 60.608 61.111 0.00 0.00 0.00 4.16
5122 5406 2.125106 GGCGGTGGATCTGGTGTC 60.125 66.667 0.00 0.00 0.00 3.67
5123 5407 2.660064 GGCGGTGGATCTGGTGTCT 61.660 63.158 0.00 0.00 0.00 3.41
5124 5408 1.153549 GCGGTGGATCTGGTGTCTC 60.154 63.158 0.00 0.00 0.00 3.36
5125 5409 1.139734 CGGTGGATCTGGTGTCTCG 59.860 63.158 0.00 0.00 0.00 4.04
5126 5410 1.517832 GGTGGATCTGGTGTCTCGG 59.482 63.158 0.00 0.00 0.00 4.63
5127 5411 1.258445 GGTGGATCTGGTGTCTCGGT 61.258 60.000 0.00 0.00 0.00 4.69
5128 5412 0.173708 GTGGATCTGGTGTCTCGGTC 59.826 60.000 0.00 0.00 0.00 4.79
5129 5413 1.313091 TGGATCTGGTGTCTCGGTCG 61.313 60.000 0.00 0.00 0.00 4.79
5130 5414 1.226717 GATCTGGTGTCTCGGTCGC 60.227 63.158 0.00 0.00 0.00 5.19
5131 5415 2.921538 GATCTGGTGTCTCGGTCGCG 62.922 65.000 0.00 0.00 0.00 5.87
5156 5440 3.766691 CGGGATCCGGTGGTCGTT 61.767 66.667 11.10 0.00 44.15 3.85
5157 5441 2.125269 GGGATCCGGTGGTCGTTG 60.125 66.667 5.45 0.00 37.11 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.870445 ACACACATTTTTGAGTAAAACACAGTT 59.130 29.630 0.00 0.00 38.48 3.16
34 35 7.375053 ACACACATTTTTGAGTAAAACACAGT 58.625 30.769 0.00 0.00 38.48 3.55
35 36 7.810766 ACACACATTTTTGAGTAAAACACAG 57.189 32.000 0.00 0.00 38.48 3.66
231 236 1.814394 GTTGGCTGTTCATGATCTGCA 59.186 47.619 26.92 15.77 0.00 4.41
232 237 1.814394 TGTTGGCTGTTCATGATCTGC 59.186 47.619 21.19 21.19 0.00 4.26
256 262 1.862602 TTCGACGCACAGCTCAGCTA 61.863 55.000 0.00 0.00 36.40 3.32
272 278 2.194800 TCTAGCAGCGACTCATTTCG 57.805 50.000 0.00 0.00 42.15 3.46
273 279 3.062774 GGTTTCTAGCAGCGACTCATTTC 59.937 47.826 0.00 0.00 0.00 2.17
277 283 0.966179 TGGTTTCTAGCAGCGACTCA 59.034 50.000 0.00 0.00 0.00 3.41
282 288 3.938963 TCCTTTTATGGTTTCTAGCAGCG 59.061 43.478 0.00 0.00 34.83 5.18
284 290 4.332819 CCGTCCTTTTATGGTTTCTAGCAG 59.667 45.833 0.00 0.00 34.83 4.24
292 298 2.037511 TCACGACCGTCCTTTTATGGTT 59.962 45.455 0.00 0.00 38.92 3.67
293 299 1.619827 TCACGACCGTCCTTTTATGGT 59.380 47.619 0.00 0.00 41.60 3.55
305 311 4.966005 ACAGACATGTCACGACCG 57.034 55.556 27.02 10.48 32.99 4.79
360 367 2.061028 CGGACATTTCTTGCTTTTGCC 58.939 47.619 0.00 0.00 46.87 4.52
403 410 2.516930 CATGTGATCGGTGGGCCC 60.517 66.667 17.59 17.59 0.00 5.80
467 474 4.293671 TGGGCAAAGGGGTTCCGG 62.294 66.667 0.00 0.00 38.33 5.14
494 506 2.385361 CTACGTGACGCGCGAAAC 59.615 61.111 39.36 29.66 46.11 2.78
540 552 1.532505 GGAATACGTTGAGCGCGTCTA 60.533 52.381 8.43 0.00 46.11 2.59
576 588 2.534396 ATGGGTGGGAAACTGCGGA 61.534 57.895 0.00 0.00 0.00 5.54
613 625 0.179026 CCTCGAGTCGGTAGATGGGA 60.179 60.000 13.54 0.00 0.00 4.37
824 858 3.703127 GTGGGAGGACACGGGACC 61.703 72.222 0.00 0.00 0.00 4.46
825 859 3.703127 GGTGGGAGGACACGGGAC 61.703 72.222 0.00 0.00 42.23 4.46
834 888 1.076727 GAGGGTTTTGGGTGGGAGG 59.923 63.158 0.00 0.00 0.00 4.30
899 953 1.305465 TACTTGGTGGGCGAGGCTA 60.305 57.895 0.00 0.00 0.00 3.93
981 1040 1.227380 CCTTTCCCGATCCGCTCAG 60.227 63.158 0.00 0.00 0.00 3.35
1059 1118 4.737177 GCCCTCTTGCTGCTGGCT 62.737 66.667 0.00 0.00 42.39 4.75
1205 1264 2.762745 GAACTGGGCGTTAGTTTGAGA 58.237 47.619 0.00 0.00 38.42 3.27
1206 1265 1.459592 CGAACTGGGCGTTAGTTTGAG 59.540 52.381 8.60 0.00 40.45 3.02
1207 1266 1.504359 CGAACTGGGCGTTAGTTTGA 58.496 50.000 8.60 0.00 40.45 2.69
1208 1267 0.110373 GCGAACTGGGCGTTAGTTTG 60.110 55.000 9.50 9.50 40.78 2.93
1209 1268 0.250166 AGCGAACTGGGCGTTAGTTT 60.250 50.000 0.00 0.00 38.42 2.66
1210 1269 0.250166 AAGCGAACTGGGCGTTAGTT 60.250 50.000 0.00 0.00 40.84 2.24
1211 1270 0.669625 GAAGCGAACTGGGCGTTAGT 60.670 55.000 0.00 0.00 35.56 2.24
1212 1271 1.683790 CGAAGCGAACTGGGCGTTAG 61.684 60.000 0.00 0.00 35.56 2.34
1213 1272 1.735198 CGAAGCGAACTGGGCGTTA 60.735 57.895 0.00 0.00 35.56 3.18
1214 1273 2.781595 ATCGAAGCGAACTGGGCGTT 62.782 55.000 0.00 0.00 39.99 4.84
1215 1274 3.296709 ATCGAAGCGAACTGGGCGT 62.297 57.895 0.00 0.00 39.99 5.68
1219 1278 1.857217 CATGAGATCGAAGCGAACTGG 59.143 52.381 4.36 0.00 38.98 4.00
1238 1308 1.872234 GATCGAGCACGCGTTAGCA 60.872 57.895 21.65 3.69 45.49 3.49
1396 1470 1.460504 CTCCCGCGCATATAGGAGTA 58.539 55.000 16.01 0.00 40.91 2.59
1397 1471 1.251527 CCTCCCGCGCATATAGGAGT 61.252 60.000 20.62 0.00 43.73 3.85
1398 1472 1.251527 ACCTCCCGCGCATATAGGAG 61.252 60.000 18.64 16.97 44.65 3.69
1399 1473 1.228769 ACCTCCCGCGCATATAGGA 60.229 57.895 18.64 10.17 0.00 2.94
1400 1474 1.079819 CACCTCCCGCGCATATAGG 60.080 63.158 8.75 10.87 0.00 2.57
1401 1475 0.033504 AACACCTCCCGCGCATATAG 59.966 55.000 8.75 0.00 0.00 1.31
1455 1533 2.660572 GAGAGCCAGTCAGTCCATCTA 58.339 52.381 0.00 0.00 0.00 1.98
1634 1718 1.135603 CACATGTCCGGAGCAACATTG 60.136 52.381 3.06 4.23 33.92 2.82
1698 1782 6.926272 CCTATCTGAACAAGAATACAGGTAGC 59.074 42.308 0.00 0.00 40.56 3.58
1699 1783 6.926272 GCCTATCTGAACAAGAATACAGGTAG 59.074 42.308 0.00 0.00 41.15 3.18
1700 1784 6.382859 TGCCTATCTGAACAAGAATACAGGTA 59.617 38.462 0.00 0.00 38.79 3.08
1701 1785 5.189736 TGCCTATCTGAACAAGAATACAGGT 59.810 40.000 0.00 0.00 38.79 4.00
1703 1787 7.041508 GGATTGCCTATCTGAACAAGAATACAG 60.042 40.741 0.00 0.00 38.79 2.74
1704 1788 6.767902 GGATTGCCTATCTGAACAAGAATACA 59.232 38.462 0.00 0.00 38.79 2.29
1787 1888 4.776743 CTTCACGGACATTTGACTTCTTG 58.223 43.478 0.00 0.00 0.00 3.02
1789 1890 2.808543 GCTTCACGGACATTTGACTTCT 59.191 45.455 0.00 0.00 0.00 2.85
1829 1930 2.607187 CAAGCGACCAAGGTACTAGTG 58.393 52.381 5.39 0.00 38.49 2.74
1904 2008 8.519799 AACCGTGTCCTAATTGAAATGAATAT 57.480 30.769 0.00 0.00 0.00 1.28
1921 2025 1.732259 CCATTAGCTGTGAACCGTGTC 59.268 52.381 0.00 0.00 0.00 3.67
2024 2131 6.931840 GGTAGGCGATCATTTTCTCTTCTTAT 59.068 38.462 0.00 0.00 0.00 1.73
2025 2132 6.098409 AGGTAGGCGATCATTTTCTCTTCTTA 59.902 38.462 0.00 0.00 0.00 2.10
2026 2133 5.104735 AGGTAGGCGATCATTTTCTCTTCTT 60.105 40.000 0.00 0.00 0.00 2.52
2027 2134 4.407296 AGGTAGGCGATCATTTTCTCTTCT 59.593 41.667 0.00 0.00 0.00 2.85
2028 2135 4.509600 CAGGTAGGCGATCATTTTCTCTTC 59.490 45.833 0.00 0.00 0.00 2.87
2029 2136 4.446371 CAGGTAGGCGATCATTTTCTCTT 58.554 43.478 0.00 0.00 0.00 2.85
2033 2140 2.222027 CCCAGGTAGGCGATCATTTTC 58.778 52.381 0.00 0.00 35.39 2.29
2037 2144 3.151906 GCCCAGGTAGGCGATCAT 58.848 61.111 0.00 0.00 44.57 2.45
3612 3741 0.530744 CTGTAGCTGCCGACCAACTA 59.469 55.000 0.00 0.00 0.00 2.24
3625 3754 3.678072 TCGAATAGCACAAACACTGTAGC 59.322 43.478 0.00 0.00 36.10 3.58
3694 3823 5.299782 ACCGAAGTCATAGATCCAGAACTAC 59.700 44.000 0.00 0.00 0.00 2.73
3735 3969 9.778741 ACACTCATCAAGATTACTCTAAACAAA 57.221 29.630 0.00 0.00 0.00 2.83
3747 3981 3.589988 GACGTGGACACTCATCAAGATT 58.410 45.455 0.00 0.00 0.00 2.40
3860 4095 1.019673 CCGAGCCTGGTGAATCAATG 58.980 55.000 0.00 0.00 0.00 2.82
3966 4201 9.287373 CTTACTGGTAGGTAACATAAACCAAAA 57.713 33.333 0.00 0.00 39.62 2.44
3981 4216 2.930040 CACATGTTCGCTTACTGGTAGG 59.070 50.000 0.00 0.00 0.00 3.18
3982 4217 3.845178 TCACATGTTCGCTTACTGGTAG 58.155 45.455 0.00 0.00 0.00 3.18
3983 4218 3.508402 TCTCACATGTTCGCTTACTGGTA 59.492 43.478 0.00 0.00 0.00 3.25
3984 4219 2.299013 TCTCACATGTTCGCTTACTGGT 59.701 45.455 0.00 0.00 0.00 4.00
3985 4220 2.926200 CTCTCACATGTTCGCTTACTGG 59.074 50.000 0.00 0.00 0.00 4.00
3986 4221 3.838120 TCTCTCACATGTTCGCTTACTG 58.162 45.455 0.00 0.00 0.00 2.74
3987 4222 4.521130 TTCTCTCACATGTTCGCTTACT 57.479 40.909 0.00 0.00 0.00 2.24
3988 4223 4.923871 TCTTTCTCTCACATGTTCGCTTAC 59.076 41.667 0.00 0.00 0.00 2.34
3989 4224 5.134202 TCTTTCTCTCACATGTTCGCTTA 57.866 39.130 0.00 0.00 0.00 3.09
3990 4225 3.995199 TCTTTCTCTCACATGTTCGCTT 58.005 40.909 0.00 0.00 0.00 4.68
3991 4226 3.667497 TCTTTCTCTCACATGTTCGCT 57.333 42.857 0.00 0.00 0.00 4.93
3992 4227 3.063180 CCATCTTTCTCTCACATGTTCGC 59.937 47.826 0.00 0.00 0.00 4.70
3993 4228 3.063180 GCCATCTTTCTCTCACATGTTCG 59.937 47.826 0.00 0.00 0.00 3.95
4000 4235 2.797177 AAGGGCCATCTTTCTCTCAC 57.203 50.000 6.18 0.00 0.00 3.51
4006 4241 5.921962 AAATCTGTTAAGGGCCATCTTTC 57.078 39.130 6.18 0.00 0.00 2.62
4007 4242 5.360999 GCTAAATCTGTTAAGGGCCATCTTT 59.639 40.000 6.18 0.00 0.00 2.52
4010 4245 4.464947 AGCTAAATCTGTTAAGGGCCATC 58.535 43.478 6.18 0.00 0.00 3.51
4015 4250 8.506168 TGTGAATAAGCTAAATCTGTTAAGGG 57.494 34.615 0.00 0.00 0.00 3.95
4100 4335 0.701303 CGTTCGACAGCACGTAGTTC 59.299 55.000 0.00 0.00 41.61 3.01
4170 4405 2.040213 GAAGCACATCCCGATGCACG 62.040 60.000 4.58 0.00 44.59 5.34
4184 4419 1.806542 GGAGCAGAAAACGATGAAGCA 59.193 47.619 0.00 0.00 0.00 3.91
4196 4431 3.043713 CGCAGCAACGGAGCAGAA 61.044 61.111 4.18 0.00 36.85 3.02
4274 4509 3.064207 TGTTCAGAAACATACACGGCTC 58.936 45.455 0.00 0.00 40.45 4.70
4319 4554 4.931002 GCACACAAACAAATATTGCCAGAT 59.069 37.500 0.00 0.00 0.00 2.90
4324 4559 4.511082 ACAAGGCACACAAACAAATATTGC 59.489 37.500 0.00 0.00 0.00 3.56
4328 4563 4.355437 CGAACAAGGCACACAAACAAATA 58.645 39.130 0.00 0.00 0.00 1.40
4393 4628 5.150683 GCAACACACGAATATGTTTGCTAA 58.849 37.500 13.59 0.00 40.07 3.09
4411 4646 3.438781 AGTTTGTTTCTCTCGTTGCAACA 59.561 39.130 28.01 14.60 0.00 3.33
4438 4673 6.903883 ACAAAACATACTCTTATAGGTGCG 57.096 37.500 0.00 0.00 0.00 5.34
4458 4693 6.072728 GCTGACATGAACACTTATACCAACAA 60.073 38.462 0.00 0.00 0.00 2.83
4459 4694 5.411361 GCTGACATGAACACTTATACCAACA 59.589 40.000 0.00 0.00 0.00 3.33
4474 4712 0.391130 GCGGTTAGGTGCTGACATGA 60.391 55.000 0.00 0.00 0.00 3.07
4477 4715 0.602638 CTTGCGGTTAGGTGCTGACA 60.603 55.000 0.00 0.00 0.00 3.58
4480 4718 2.870372 GCTTGCGGTTAGGTGCTG 59.130 61.111 0.00 0.00 0.00 4.41
4487 4725 3.744942 TGTTTAACATACGCTTGCGGTTA 59.255 39.130 19.19 13.84 0.00 2.85
4610 4886 6.019075 TCGTATGATCATCGTTGGTGAAATTC 60.019 38.462 12.53 0.00 0.00 2.17
4616 4892 4.507756 ACAATCGTATGATCATCGTTGGTG 59.492 41.667 12.53 13.24 32.24 4.17
4714 4991 5.053221 CGTAATGAGACTTATCACGTTGTCG 60.053 44.000 0.00 0.00 43.34 4.35
4715 4992 5.229469 CCGTAATGAGACTTATCACGTTGTC 59.771 44.000 2.59 0.00 30.46 3.18
4716 4993 5.100259 CCGTAATGAGACTTATCACGTTGT 58.900 41.667 2.59 0.00 30.46 3.32
4717 4994 5.004440 CACCGTAATGAGACTTATCACGTTG 59.996 44.000 2.59 0.00 30.46 4.10
4718 4995 5.100259 CACCGTAATGAGACTTATCACGTT 58.900 41.667 2.59 0.00 30.46 3.99
4734 5017 3.181464 TGTGATGACCAAACTCACCGTAA 60.181 43.478 0.00 0.00 38.79 3.18
4735 5018 2.365941 TGTGATGACCAAACTCACCGTA 59.634 45.455 0.00 0.00 38.79 4.02
4800 5084 7.777910 CCCACCAGAAACCTCATGTTATAATTA 59.222 37.037 0.00 0.00 35.67 1.40
4818 5102 0.691078 GGTATCCTCAGCCCACCAGA 60.691 60.000 0.00 0.00 0.00 3.86
4819 5103 0.982852 TGGTATCCTCAGCCCACCAG 60.983 60.000 0.00 0.00 34.40 4.00
4820 5104 1.082019 TGGTATCCTCAGCCCACCA 59.918 57.895 0.00 0.00 36.94 4.17
4821 5105 1.527370 GTGGTATCCTCAGCCCACC 59.473 63.158 0.00 0.00 41.20 4.61
4822 5106 1.527370 GGTGGTATCCTCAGCCCAC 59.473 63.158 0.00 0.00 45.29 4.61
4823 5107 2.063979 CGGTGGTATCCTCAGCCCA 61.064 63.158 0.00 0.00 0.00 5.36
4824 5108 2.822399 CGGTGGTATCCTCAGCCC 59.178 66.667 0.00 0.00 0.00 5.19
4825 5109 2.109181 GCGGTGGTATCCTCAGCC 59.891 66.667 2.58 0.00 33.47 4.85
4826 5110 2.109181 GGCGGTGGTATCCTCAGC 59.891 66.667 4.86 4.86 37.45 4.26
4827 5111 1.749334 GAGGGCGGTGGTATCCTCAG 61.749 65.000 0.00 0.00 43.78 3.35
4828 5112 1.760875 GAGGGCGGTGGTATCCTCA 60.761 63.158 0.00 0.00 43.78 3.86
4829 5113 2.508751 GGAGGGCGGTGGTATCCTC 61.509 68.421 0.00 0.00 43.65 3.71
4830 5114 2.446036 GGAGGGCGGTGGTATCCT 60.446 66.667 0.00 0.00 0.00 3.24
4831 5115 2.446036 AGGAGGGCGGTGGTATCC 60.446 66.667 0.00 0.00 0.00 2.59
4832 5116 2.508751 GGAGGAGGGCGGTGGTATC 61.509 68.421 0.00 0.00 0.00 2.24
4833 5117 2.446036 GGAGGAGGGCGGTGGTAT 60.446 66.667 0.00 0.00 0.00 2.73
4834 5118 3.674050 GAGGAGGAGGGCGGTGGTA 62.674 68.421 0.00 0.00 0.00 3.25
4836 5120 4.787280 AGAGGAGGAGGGCGGTGG 62.787 72.222 0.00 0.00 0.00 4.61
4837 5121 3.151022 GAGAGGAGGAGGGCGGTG 61.151 72.222 0.00 0.00 0.00 4.94
4838 5122 4.824515 CGAGAGGAGGAGGGCGGT 62.825 72.222 0.00 0.00 0.00 5.68
4842 5126 2.052690 TTTCGCGAGAGGAGGAGGG 61.053 63.158 9.59 0.00 43.69 4.30
4843 5127 1.139947 GTTTCGCGAGAGGAGGAGG 59.860 63.158 9.59 0.00 43.69 4.30
4844 5128 1.139947 GGTTTCGCGAGAGGAGGAG 59.860 63.158 9.59 0.00 43.69 3.69
4845 5129 1.605451 TGGTTTCGCGAGAGGAGGA 60.605 57.895 9.59 0.00 43.69 3.71
4846 5130 1.446272 GTGGTTTCGCGAGAGGAGG 60.446 63.158 9.59 0.00 43.69 4.30
4847 5131 1.446272 GGTGGTTTCGCGAGAGGAG 60.446 63.158 9.59 0.00 43.69 3.69
4848 5132 1.874345 GAGGTGGTTTCGCGAGAGGA 61.874 60.000 9.59 0.00 43.69 3.71
4849 5133 1.446272 GAGGTGGTTTCGCGAGAGG 60.446 63.158 9.59 0.00 43.69 3.69
4850 5134 1.446272 GGAGGTGGTTTCGCGAGAG 60.446 63.158 9.59 0.00 43.69 3.20
4851 5135 1.874345 GAGGAGGTGGTTTCGCGAGA 61.874 60.000 9.59 0.43 39.20 4.04
4852 5136 1.446272 GAGGAGGTGGTTTCGCGAG 60.446 63.158 9.59 0.00 0.00 5.03
4853 5137 1.874345 GAGAGGAGGTGGTTTCGCGA 61.874 60.000 3.71 3.71 0.00 5.87
4854 5138 1.446272 GAGAGGAGGTGGTTTCGCG 60.446 63.158 0.00 0.00 0.00 5.87
4855 5139 1.446272 CGAGAGGAGGTGGTTTCGC 60.446 63.158 0.00 0.00 0.00 4.70
4856 5140 1.446272 GCGAGAGGAGGTGGTTTCG 60.446 63.158 0.00 0.00 0.00 3.46
4857 5141 1.446272 CGCGAGAGGAGGTGGTTTC 60.446 63.158 0.00 0.00 0.00 2.78
4858 5142 1.906824 TCGCGAGAGGAGGTGGTTT 60.907 57.895 3.71 0.00 34.84 3.27
4859 5143 2.282958 TCGCGAGAGGAGGTGGTT 60.283 61.111 3.71 0.00 34.84 3.67
4860 5144 3.063084 GTCGCGAGAGGAGGTGGT 61.063 66.667 10.24 0.00 43.49 4.16
4861 5145 3.827898 GGTCGCGAGAGGAGGTGG 61.828 72.222 10.24 0.00 43.49 4.61
4862 5146 3.827898 GGGTCGCGAGAGGAGGTG 61.828 72.222 10.24 0.00 43.49 4.00
4899 5183 2.686106 TAGGGTTCCTCCGCCACC 60.686 66.667 0.00 0.00 34.61 4.61
4900 5184 2.901042 CTAGGGTTCCTCCGCCAC 59.099 66.667 0.00 0.00 34.61 5.01
4901 5185 3.081409 GCTAGGGTTCCTCCGCCA 61.081 66.667 0.00 0.00 34.61 5.69
4902 5186 2.764547 AGCTAGGGTTCCTCCGCC 60.765 66.667 0.00 0.00 34.61 6.13
4903 5187 2.501610 CAGCTAGGGTTCCTCCGC 59.498 66.667 0.00 0.00 34.61 5.54
4904 5188 2.501610 GCAGCTAGGGTTCCTCCG 59.498 66.667 0.00 0.00 34.61 4.63
4905 5189 2.501610 CGCAGCTAGGGTTCCTCC 59.498 66.667 0.00 0.00 34.61 4.30
4932 5216 2.774351 GATGAGGTGGGGAGGGGG 60.774 72.222 0.00 0.00 0.00 5.40
4933 5217 2.774351 GGATGAGGTGGGGAGGGG 60.774 72.222 0.00 0.00 0.00 4.79
4934 5218 2.774351 GGGATGAGGTGGGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
4935 5219 2.042762 TGGGATGAGGTGGGGAGG 59.957 66.667 0.00 0.00 0.00 4.30
4936 5220 2.378634 GGTGGGATGAGGTGGGGAG 61.379 68.421 0.00 0.00 0.00 4.30
4937 5221 2.286121 GGTGGGATGAGGTGGGGA 60.286 66.667 0.00 0.00 0.00 4.81
4938 5222 2.286425 AGGTGGGATGAGGTGGGG 60.286 66.667 0.00 0.00 0.00 4.96
4939 5223 2.378634 GGAGGTGGGATGAGGTGGG 61.379 68.421 0.00 0.00 0.00 4.61
4940 5224 0.916358 AAGGAGGTGGGATGAGGTGG 60.916 60.000 0.00 0.00 0.00 4.61
4941 5225 0.254178 CAAGGAGGTGGGATGAGGTG 59.746 60.000 0.00 0.00 0.00 4.00
4942 5226 1.566298 GCAAGGAGGTGGGATGAGGT 61.566 60.000 0.00 0.00 0.00 3.85
4943 5227 1.225704 GCAAGGAGGTGGGATGAGG 59.774 63.158 0.00 0.00 0.00 3.86
4944 5228 1.225704 GGCAAGGAGGTGGGATGAG 59.774 63.158 0.00 0.00 0.00 2.90
4945 5229 2.669133 CGGCAAGGAGGTGGGATGA 61.669 63.158 0.00 0.00 0.00 2.92
4946 5230 2.124570 CGGCAAGGAGGTGGGATG 60.125 66.667 0.00 0.00 0.00 3.51
4947 5231 4.115199 GCGGCAAGGAGGTGGGAT 62.115 66.667 0.00 0.00 0.00 3.85
5024 5308 2.980233 ACGCAGAAGCAGGGCAAC 60.980 61.111 0.00 0.00 42.27 4.17
5025 5309 2.979676 CACGCAGAAGCAGGGCAA 60.980 61.111 0.00 0.00 42.27 4.52
5029 5313 3.551496 TTCCCCACGCAGAAGCAGG 62.551 63.158 0.00 0.00 42.27 4.85
5030 5314 2.032528 TTCCCCACGCAGAAGCAG 59.967 61.111 0.00 0.00 42.27 4.24
5031 5315 2.281484 GTTCCCCACGCAGAAGCA 60.281 61.111 0.00 0.00 42.27 3.91
5032 5316 3.056328 GGTTCCCCACGCAGAAGC 61.056 66.667 0.00 0.00 33.81 3.86
5033 5317 2.359975 GGGTTCCCCACGCAGAAG 60.360 66.667 0.00 0.00 44.65 2.85
5042 5326 3.489513 CCAGATCCGGGGTTCCCC 61.490 72.222 16.52 16.52 41.57 4.81
5043 5327 2.366435 TCCAGATCCGGGGTTCCC 60.366 66.667 0.00 0.00 41.09 3.97
5044 5328 3.108288 GCTCCAGATCCGGGGTTCC 62.108 68.421 0.00 0.00 0.00 3.62
5045 5329 2.506472 GCTCCAGATCCGGGGTTC 59.494 66.667 0.00 0.00 0.00 3.62
5046 5330 3.470888 CGCTCCAGATCCGGGGTT 61.471 66.667 0.00 0.00 0.00 4.11
5063 5347 3.830192 CTTGCCAATGGAGCCGCC 61.830 66.667 2.05 0.00 37.10 6.13
5064 5348 3.830192 CCTTGCCAATGGAGCCGC 61.830 66.667 2.05 0.00 0.00 6.53
5065 5349 3.830192 GCCTTGCCAATGGAGCCG 61.830 66.667 2.05 0.00 0.00 5.52
5066 5350 2.062177 ATGCCTTGCCAATGGAGCC 61.062 57.895 2.05 0.00 0.00 4.70
5067 5351 1.143183 CATGCCTTGCCAATGGAGC 59.857 57.895 2.05 0.00 0.00 4.70
5068 5352 0.458669 GTCATGCCTTGCCAATGGAG 59.541 55.000 2.05 0.00 0.00 3.86
5069 5353 0.971959 GGTCATGCCTTGCCAATGGA 60.972 55.000 2.05 0.00 0.00 3.41
5070 5354 1.259142 TGGTCATGCCTTGCCAATGG 61.259 55.000 0.00 0.00 38.35 3.16
5071 5355 0.174845 CTGGTCATGCCTTGCCAATG 59.825 55.000 7.54 0.00 38.35 2.82
5072 5356 1.610554 GCTGGTCATGCCTTGCCAAT 61.611 55.000 7.54 0.00 38.35 3.16
5073 5357 2.277591 GCTGGTCATGCCTTGCCAA 61.278 57.895 7.54 0.00 38.35 4.52
5074 5358 1.851065 TAGCTGGTCATGCCTTGCCA 61.851 55.000 0.00 6.78 37.85 4.92
5075 5359 1.077501 TAGCTGGTCATGCCTTGCC 60.078 57.895 0.00 3.49 37.85 4.52
5076 5360 1.722636 GCTAGCTGGTCATGCCTTGC 61.723 60.000 7.70 10.52 38.35 4.01
5077 5361 0.393402 TGCTAGCTGGTCATGCCTTG 60.393 55.000 17.23 2.83 38.35 3.61
5078 5362 0.107312 CTGCTAGCTGGTCATGCCTT 60.107 55.000 17.23 0.00 38.35 4.35
5079 5363 1.525923 CTGCTAGCTGGTCATGCCT 59.474 57.895 17.23 0.00 38.35 4.75
5080 5364 2.185494 GCTGCTAGCTGGTCATGCC 61.185 63.158 21.46 1.11 38.45 4.40
5081 5365 2.185494 GGCTGCTAGCTGGTCATGC 61.185 63.158 21.46 11.06 41.99 4.06
5082 5366 1.886313 CGGCTGCTAGCTGGTCATG 60.886 63.158 21.46 0.00 43.75 3.07
5083 5367 2.503061 CGGCTGCTAGCTGGTCAT 59.497 61.111 21.46 0.00 43.75 3.06
5089 5373 4.463879 CCTGCACGGCTGCTAGCT 62.464 66.667 17.23 0.00 44.57 3.32
5099 5383 4.457496 AGATCCACCGCCTGCACG 62.457 66.667 0.00 0.00 0.00 5.34
5100 5384 2.821366 CAGATCCACCGCCTGCAC 60.821 66.667 0.00 0.00 0.00 4.57
5101 5385 4.100084 CCAGATCCACCGCCTGCA 62.100 66.667 0.00 0.00 0.00 4.41
5102 5386 4.101448 ACCAGATCCACCGCCTGC 62.101 66.667 0.00 0.00 0.00 4.85
5103 5387 2.124983 CACCAGATCCACCGCCTG 60.125 66.667 0.00 0.00 0.00 4.85
5104 5388 2.607750 ACACCAGATCCACCGCCT 60.608 61.111 0.00 0.00 0.00 5.52
5105 5389 2.125106 GACACCAGATCCACCGCC 60.125 66.667 0.00 0.00 0.00 6.13
5106 5390 1.153549 GAGACACCAGATCCACCGC 60.154 63.158 0.00 0.00 0.00 5.68
5107 5391 1.139734 CGAGACACCAGATCCACCG 59.860 63.158 0.00 0.00 0.00 4.94
5108 5392 1.258445 ACCGAGACACCAGATCCACC 61.258 60.000 0.00 0.00 0.00 4.61
5109 5393 0.173708 GACCGAGACACCAGATCCAC 59.826 60.000 0.00 0.00 0.00 4.02
5110 5394 1.313091 CGACCGAGACACCAGATCCA 61.313 60.000 0.00 0.00 0.00 3.41
5111 5395 1.433879 CGACCGAGACACCAGATCC 59.566 63.158 0.00 0.00 0.00 3.36
5112 5396 1.226717 GCGACCGAGACACCAGATC 60.227 63.158 0.00 0.00 0.00 2.75
5113 5397 2.885861 GCGACCGAGACACCAGAT 59.114 61.111 0.00 0.00 0.00 2.90
5114 5398 3.733960 CGCGACCGAGACACCAGA 61.734 66.667 0.00 0.00 36.29 3.86
5140 5424 2.125269 CAACGACCACCGGATCCC 60.125 66.667 9.46 0.00 43.93 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.