Multiple sequence alignment - TraesCS1D01G279700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G279700 chr1D 100.000 5327 0 0 587 5913 377807805 377802479 0.000000e+00 9838.0
1 TraesCS1D01G279700 chr1D 94.737 247 13 0 5667 5913 454167041 454166795 9.300000e-103 385.0
2 TraesCS1D01G279700 chr1D 94.332 247 14 0 5667 5913 180173451 180173205 4.320000e-101 379.0
3 TraesCS1D01G279700 chr1D 100.000 159 0 0 1 159 377808391 377808233 1.610000e-75 294.0
4 TraesCS1D01G279700 chr1B 95.760 3514 88 20 2143 5637 505071656 505068185 0.000000e+00 5607.0
5 TraesCS1D01G279700 chr1B 89.814 1021 41 27 631 1610 505073293 505072295 0.000000e+00 1251.0
6 TraesCS1D01G279700 chr1B 92.427 647 33 4 1681 2312 505072294 505071649 0.000000e+00 909.0
7 TraesCS1D01G279700 chr1B 88.820 161 7 7 1 157 505073556 505073403 2.810000e-43 187.0
8 TraesCS1D01G279700 chr1B 100.000 31 0 0 593 623 505073315 505073285 2.300000e-04 58.4
9 TraesCS1D01G279700 chr1A 86.618 4140 342 82 645 4643 478355542 478351474 0.000000e+00 4381.0
10 TraesCS1D01G279700 chr1A 84.349 607 63 14 4752 5330 478351324 478350722 3.090000e-157 566.0
11 TraesCS1D01G279700 chr1A 89.697 165 10 3 1 159 478356006 478355843 2.790000e-48 204.0
12 TraesCS1D01G279700 chr4D 96.000 250 10 0 5664 5913 480505087 480505336 1.980000e-109 407.0
13 TraesCS1D01G279700 chr7D 95.600 250 10 1 5664 5913 264319943 264319695 3.320000e-107 399.0
14 TraesCS1D01G279700 chr7D 83.384 331 52 3 5339 5666 509907731 509908061 2.680000e-78 303.0
15 TraesCS1D01G279700 chr6D 94.821 251 13 0 5663 5913 469799592 469799342 5.560000e-105 392.0
16 TraesCS1D01G279700 chr6D 87.654 81 10 0 1603 1683 97926350 97926430 1.750000e-15 95.3
17 TraesCS1D01G279700 chr6D 85.263 95 5 2 1597 1683 58042752 58042845 8.160000e-14 89.8
18 TraesCS1D01G279700 chr5B 94.821 251 13 0 5663 5913 316616962 316617212 5.560000e-105 392.0
19 TraesCS1D01G279700 chr5B 81.571 331 58 3 5339 5666 532105403 532105073 2.720000e-68 270.0
20 TraesCS1D01G279700 chr4B 94.821 251 13 0 5663 5913 400686132 400686382 5.560000e-105 392.0
21 TraesCS1D01G279700 chr2D 95.510 245 11 0 5667 5911 377506940 377506696 5.560000e-105 392.0
22 TraesCS1D01G279700 chr2D 85.758 330 44 3 5339 5666 194802139 194802467 4.390000e-91 346.0
23 TraesCS1D01G279700 chr2D 82.477 331 55 3 5339 5666 544578456 544578786 2.700000e-73 287.0
24 TraesCS1D01G279700 chr2D 86.905 84 5 3 1606 1683 608534195 608534278 8.160000e-14 89.8
25 TraesCS1D01G279700 chr2D 98.000 50 1 0 1603 1652 453597757 453597708 2.940000e-13 87.9
26 TraesCS1D01G279700 chr5D 93.625 251 16 0 5663 5913 335865087 335864837 5.590000e-100 375.0
27 TraesCS1D01G279700 chr2A 84.848 330 47 3 5339 5666 209423680 209424008 4.420000e-86 329.0
28 TraesCS1D01G279700 chr2A 87.952 83 8 2 1603 1685 566850768 566850688 4.880000e-16 97.1
29 TraesCS1D01G279700 chr3A 81.818 330 58 2 5339 5666 477002917 477003246 5.840000e-70 276.0
30 TraesCS1D01G279700 chr3D 81.515 330 57 4 5339 5666 341255491 341255164 9.770000e-68 268.0
31 TraesCS1D01G279700 chr7A 85.022 227 26 6 5442 5665 32796043 32796264 2.140000e-54 224.0
32 TraesCS1D01G279700 chr6B 86.957 92 6 5 1603 1690 663679838 663679749 1.360000e-16 99.0
33 TraesCS1D01G279700 chr6B 87.356 87 3 3 1605 1683 421540491 421540577 6.310000e-15 93.5
34 TraesCS1D01G279700 chrUn 86.022 93 5 3 1602 1686 13209432 13209340 6.310000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G279700 chr1D 377802479 377808391 5912 True 5066.00 9838 100.0000 1 5913 2 chr1D.!!$R3 5912
1 TraesCS1D01G279700 chr1B 505068185 505073556 5371 True 1602.48 5607 93.3642 1 5637 5 chr1B.!!$R1 5636
2 TraesCS1D01G279700 chr1A 478350722 478356006 5284 True 1717.00 4381 86.8880 1 5330 3 chr1A.!!$R1 5329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 917 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71 F
1140 1192 0.032117 TCATCGATGTCAGTCCCCCT 60.032 55.000 24.09 0.00 0.00 4.79 F
1271 1336 0.248215 GCCGGCTTCGATTGACATTG 60.248 55.000 22.15 0.00 35.61 2.82 F
3151 3478 0.178995 TCTTCTGCAATGGTGGCACA 60.179 50.000 20.82 6.09 36.11 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2653 2934 1.271656 GCTTTGCCAAACAGCTCATCT 59.728 47.619 0.00 0.0 0.00 2.90 R
2769 3052 6.072112 TCTGCACTGAGAAAAACCATAAAC 57.928 37.500 0.00 0.0 0.00 2.01 R
3231 3558 3.191371 AGGATGAAACATTTTGCGGAGAC 59.809 43.478 0.00 0.0 0.00 3.36 R
5140 5559 0.320073 CGGCGGTTCCTGTTTACAGA 60.320 55.000 11.35 0.0 46.59 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 141 3.563088 GATTGCCATCGCGTCGCA 61.563 61.111 18.75 9.80 38.08 5.10
626 634 3.115892 CTCGCGCGGCACCTAAAA 61.116 61.111 31.69 5.83 0.00 1.52
627 635 2.665520 TCGCGCGGCACCTAAAAA 60.666 55.556 31.69 2.53 0.00 1.94
673 681 2.244382 CGTTATAAAGGCGCCGCG 59.756 61.111 23.20 8.83 0.00 6.46
857 898 2.042831 CGGCTTTTCCCCTGCTCTG 61.043 63.158 0.00 0.00 0.00 3.35
874 915 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
875 916 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
876 917 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
923 969 2.850828 AATTCTCTGCCCTGCCCTGC 62.851 60.000 0.00 0.00 0.00 4.85
947 993 4.864334 CCTGGCCCTGGCACGATC 62.864 72.222 10.86 0.00 44.11 3.69
950 996 4.554036 GGCCCTGGCACGATCCTC 62.554 72.222 10.86 0.00 44.11 3.71
1046 1092 2.281484 GCTGTTCAAGGTGCCGGA 60.281 61.111 5.05 0.00 0.00 5.14
1140 1192 0.032117 TCATCGATGTCAGTCCCCCT 60.032 55.000 24.09 0.00 0.00 4.79
1152 1215 1.486726 AGTCCCCCTCTCTTTATTGCG 59.513 52.381 0.00 0.00 0.00 4.85
1158 1221 3.741344 CCCCTCTCTTTATTGCGTTATCG 59.259 47.826 0.00 0.00 40.37 2.92
1197 1262 4.781570 GCGACTCTCGTGTAGTACATGTAC 60.782 50.000 25.51 25.51 42.81 2.90
1202 1267 4.271776 TCTCGTGTAGTACATGTACCGATG 59.728 45.833 28.29 20.84 36.53 3.84
1203 1268 4.190772 TCGTGTAGTACATGTACCGATGA 58.809 43.478 28.29 19.94 36.53 2.92
1206 1271 5.624081 CGTGTAGTACATGTACCGATGATTC 59.376 44.000 28.29 10.45 36.75 2.52
1207 1272 6.512903 CGTGTAGTACATGTACCGATGATTCT 60.513 42.308 28.29 12.03 36.75 2.40
1208 1273 7.201145 GTGTAGTACATGTACCGATGATTCTT 58.799 38.462 28.29 11.38 36.75 2.52
1209 1274 7.167635 GTGTAGTACATGTACCGATGATTCTTG 59.832 40.741 28.29 0.00 36.75 3.02
1210 1275 6.465439 AGTACATGTACCGATGATTCTTGA 57.535 37.500 28.29 0.00 36.75 3.02
1211 1276 6.873997 AGTACATGTACCGATGATTCTTGAA 58.126 36.000 28.29 0.00 36.75 2.69
1212 1277 7.500992 AGTACATGTACCGATGATTCTTGAAT 58.499 34.615 28.29 5.10 36.75 2.57
1213 1278 6.609237 ACATGTACCGATGATTCTTGAATG 57.391 37.500 0.00 0.00 0.00 2.67
1251 1316 0.322997 CAGTCCGACTCTCTCCCTGT 60.323 60.000 0.00 0.00 0.00 4.00
1271 1336 0.248215 GCCGGCTTCGATTGACATTG 60.248 55.000 22.15 0.00 35.61 2.82
1296 1361 0.386838 GTTGCTTTGCTGGTGCTTCT 59.613 50.000 0.00 0.00 40.48 2.85
1441 1510 2.878406 CCACAAGGTATCCCATTTAGCG 59.122 50.000 0.00 0.00 0.00 4.26
1442 1511 3.433031 CCACAAGGTATCCCATTTAGCGA 60.433 47.826 0.00 0.00 0.00 4.93
1454 1523 6.929625 TCCCATTTAGCGATTGAAAATTTGA 58.070 32.000 0.00 0.00 0.00 2.69
1536 1623 9.000486 GTGCTACCTGGAGGAATATTAATTTAC 58.000 37.037 0.00 0.00 38.94 2.01
1547 1634 6.347644 GGAATATTAATTTACCCGTGCCGTAC 60.348 42.308 0.00 0.00 0.00 3.67
1553 1640 0.810648 TACCCGTGCCGTACTACTTG 59.189 55.000 0.00 0.00 0.00 3.16
1630 1717 9.819754 AGTACTCCCTCCGTAAACTAATATAAT 57.180 33.333 0.00 0.00 0.00 1.28
1633 1720 9.819754 ACTCCCTCCGTAAACTAATATAATAGT 57.180 33.333 0.00 0.00 37.73 2.12
1717 1823 5.869753 TGTTTGGTTGTTGTGGAAAAATG 57.130 34.783 0.00 0.00 0.00 2.32
1743 1851 0.798776 CTTCCGGCAGCTAACTGTTG 59.201 55.000 2.69 0.00 46.30 3.33
1774 1882 2.124011 AACACATGAGTTGCTTTGCG 57.876 45.000 7.78 0.00 0.00 4.85
1777 1885 0.593128 ACATGAGTTGCTTTGCGGAC 59.407 50.000 0.00 0.00 0.00 4.79
1870 1980 7.290110 ACTAGTAAACGGTTGGTTACTAAGT 57.710 36.000 12.49 10.15 38.08 2.24
2076 2188 7.571025 TCTGTCCCAGTTTTATAGGTTTATCC 58.429 38.462 0.00 0.00 32.61 2.59
2131 2243 3.293311 AAGTGCTCAACATGATTGCAC 57.707 42.857 20.83 20.83 44.18 4.57
2226 2502 5.233225 ACTAACCACCTTCTTAAGCGTAAC 58.767 41.667 0.00 0.00 0.00 2.50
2290 2568 8.851145 CACAGATCAGTACTAGGTATATTGTGT 58.149 37.037 0.00 0.00 0.00 3.72
2405 2684 7.881775 ATTCTCAAATTTCATACCCTGGTAC 57.118 36.000 0.00 0.00 33.01 3.34
2425 2706 8.113173 TGGTACACTAACATTTTGGGTTATTC 57.887 34.615 0.00 0.00 30.93 1.75
2450 2731 1.004277 GCGTCTGGACAGTCGACTTG 61.004 60.000 17.26 13.89 41.27 3.16
2465 2746 5.050490 GTCGACTTGGCATATCTGTTACAT 58.950 41.667 8.70 0.00 0.00 2.29
2571 2852 2.542020 TGCAACTTGCTGCTGTAGTA 57.458 45.000 14.78 0.00 45.31 1.82
2653 2934 5.072040 TGCAAGAAGACATTGATCGAGTA 57.928 39.130 0.00 0.00 0.00 2.59
2769 3052 7.646130 TCTCGTATTGGTTTTAAGTTTTTGCAG 59.354 33.333 0.00 0.00 0.00 4.41
3145 3472 7.092716 GTCAATTTAACATCTTCTGCAATGGT 58.907 34.615 1.44 0.00 0.00 3.55
3146 3473 7.062605 GTCAATTTAACATCTTCTGCAATGGTG 59.937 37.037 0.00 0.00 0.00 4.17
3147 3474 5.389859 TTTAACATCTTCTGCAATGGTGG 57.610 39.130 0.00 0.00 0.00 4.61
3148 3475 1.180029 ACATCTTCTGCAATGGTGGC 58.820 50.000 1.44 0.00 0.00 5.01
3149 3476 1.179152 CATCTTCTGCAATGGTGGCA 58.821 50.000 0.00 0.00 39.32 4.92
3150 3477 1.135199 CATCTTCTGCAATGGTGGCAC 60.135 52.381 9.70 9.70 36.11 5.01
3151 3478 0.178995 TCTTCTGCAATGGTGGCACA 60.179 50.000 20.82 6.09 36.11 4.57
3152 3479 0.892755 CTTCTGCAATGGTGGCACAT 59.107 50.000 20.82 8.29 44.52 3.21
3153 3480 1.274167 CTTCTGCAATGGTGGCACATT 59.726 47.619 20.82 13.76 44.52 2.71
3154 3481 2.212812 TCTGCAATGGTGGCACATTA 57.787 45.000 20.82 5.41 44.52 1.90
3155 3482 2.737544 TCTGCAATGGTGGCACATTAT 58.262 42.857 20.82 7.67 44.52 1.28
3156 3483 3.895998 TCTGCAATGGTGGCACATTATA 58.104 40.909 20.82 8.41 44.52 0.98
3157 3484 4.472496 TCTGCAATGGTGGCACATTATAT 58.528 39.130 20.82 2.55 44.52 0.86
3158 3485 4.278919 TCTGCAATGGTGGCACATTATATG 59.721 41.667 20.82 9.89 44.52 1.78
3159 3486 3.321396 TGCAATGGTGGCACATTATATGG 59.679 43.478 20.82 4.29 44.52 2.74
3160 3487 3.321682 GCAATGGTGGCACATTATATGGT 59.678 43.478 20.82 0.00 44.52 3.55
3161 3488 4.522405 GCAATGGTGGCACATTATATGGTA 59.478 41.667 20.82 0.00 44.52 3.25
3162 3489 5.010516 GCAATGGTGGCACATTATATGGTAA 59.989 40.000 20.82 0.00 44.52 2.85
3163 3490 6.295236 GCAATGGTGGCACATTATATGGTAAT 60.295 38.462 20.82 0.00 44.52 1.89
3164 3491 7.093988 GCAATGGTGGCACATTATATGGTAATA 60.094 37.037 20.82 0.00 44.52 0.98
3165 3492 8.461222 CAATGGTGGCACATTATATGGTAATAG 58.539 37.037 20.82 0.00 44.52 1.73
3245 3572 3.378112 CCATGTATGTCTCCGCAAAATGT 59.622 43.478 0.00 0.00 0.00 2.71
3287 3614 6.942976 AGAGAAAGATTACGGTGTCCAATTA 58.057 36.000 0.00 0.00 0.00 1.40
4267 4620 7.655328 GGATATCACTTGTTGTCTTCTCCATAG 59.345 40.741 4.83 0.00 0.00 2.23
4282 4635 6.154203 TCTCCATAGATGTAAGTTCTGCAG 57.846 41.667 7.63 7.63 0.00 4.41
4496 4856 9.252962 CCAAATTTCAACATCAAAGCTATATCC 57.747 33.333 0.00 0.00 0.00 2.59
4502 4862 7.988737 TCAACATCAAAGCTATATCCTTGTTG 58.011 34.615 13.28 13.28 34.78 3.33
4635 4995 3.868077 CGGAACTGATGAGGACATTCTTC 59.132 47.826 0.00 0.00 36.82 2.87
4647 5007 4.100189 AGGACATTCTTCTGGTAGGAATCG 59.900 45.833 0.00 0.00 0.00 3.34
4676 5036 6.149474 CACTAGGATGTGTTTTTAACCTGAGG 59.851 42.308 0.00 0.00 33.61 3.86
4712 5072 1.328986 GCTCTTATGCTTTGCGTCTCC 59.671 52.381 0.00 0.00 0.00 3.71
4750 5163 3.187227 CGCATAATATGACACTCCTTGCC 59.813 47.826 4.14 0.00 0.00 4.52
4802 5215 0.250553 ATTCAGGGACGCGGTTTTCA 60.251 50.000 12.47 0.00 0.00 2.69
5092 5511 4.737855 GGTATCACCTCACTGAAGCTTA 57.262 45.455 0.00 0.00 34.73 3.09
5135 5554 1.154150 GTTGCTGCTCGGCATGAAC 60.154 57.895 4.01 0.00 42.09 3.18
5136 5555 1.302752 TTGCTGCTCGGCATGAACT 60.303 52.632 4.01 0.00 42.09 3.01
5137 5556 1.579964 TTGCTGCTCGGCATGAACTG 61.580 55.000 4.01 0.00 42.09 3.16
5188 5616 4.074647 TCGACCTCGAGCACAAGA 57.925 55.556 6.99 0.00 44.22 3.02
5318 5764 2.232941 GGTACCTGAACCACGATCTCAA 59.767 50.000 4.06 0.00 39.50 3.02
5324 5770 3.002791 TGAACCACGATCTCAATCTTGC 58.997 45.455 0.00 0.00 31.49 4.01
5337 5783 2.821969 CAATCTTGCCTGTTGTAAGCCT 59.178 45.455 0.00 0.00 36.69 4.58
5357 5803 4.023107 GCCTACCTTTTCTTTCACTGTTCC 60.023 45.833 0.00 0.00 0.00 3.62
5446 5900 2.606213 TCATGGGCACTCGGGTCA 60.606 61.111 0.00 0.00 0.00 4.02
5447 5901 2.436646 CATGGGCACTCGGGTCAC 60.437 66.667 0.00 0.00 0.00 3.67
5448 5902 3.717294 ATGGGCACTCGGGTCACC 61.717 66.667 0.00 0.00 0.00 4.02
5451 5905 4.394712 GGCACTCGGGTCACCCTG 62.395 72.222 12.38 3.36 42.67 4.45
5452 5906 3.311110 GCACTCGGGTCACCCTGA 61.311 66.667 12.38 9.29 44.20 3.86
5456 5910 2.675423 TCGGGTCACCCTGAGTCG 60.675 66.667 12.38 0.00 41.42 4.18
5457 5911 3.760035 CGGGTCACCCTGAGTCGG 61.760 72.222 12.38 0.00 42.67 4.79
5458 5912 4.083862 GGGTCACCCTGAGTCGGC 62.084 72.222 5.22 0.00 41.34 5.54
5485 5939 9.140286 GTGGCCTTTTATTCTTTTTCTTATCAC 57.860 33.333 3.32 0.00 0.00 3.06
5524 5978 5.022021 CGCTCGAAATGCTAAAACCTTTAG 58.978 41.667 2.42 2.42 0.00 1.85
5568 6022 3.111484 TGTAATCAGGGGTATCACTGCA 58.889 45.455 0.00 0.00 34.76 4.41
5580 6034 0.108945 TCACTGCAGATCTCACGCTG 60.109 55.000 23.35 4.64 35.28 5.18
5619 6073 3.395941 AGAAGGTGGAGGACAAAGTTCAT 59.604 43.478 0.00 0.00 0.00 2.57
5624 6078 1.610624 GGAGGACAAAGTTCATGCCGA 60.611 52.381 0.00 0.00 0.00 5.54
5626 6080 0.521735 GGACAAAGTTCATGCCGACC 59.478 55.000 0.00 0.00 0.00 4.79
5627 6081 0.165944 GACAAAGTTCATGCCGACCG 59.834 55.000 0.00 0.00 0.00 4.79
5640 6094 4.139234 GACCGGTGGCGGGACTAC 62.139 72.222 14.63 0.00 0.00 2.73
5641 6095 4.691359 ACCGGTGGCGGGACTACT 62.691 66.667 6.12 0.00 0.00 2.57
5642 6096 3.387947 CCGGTGGCGGGACTACTT 61.388 66.667 0.00 0.00 0.00 2.24
5643 6097 2.660802 CGGTGGCGGGACTACTTT 59.339 61.111 0.00 0.00 0.00 2.66
5644 6098 1.606885 CCGGTGGCGGGACTACTTTA 61.607 60.000 0.00 0.00 0.00 1.85
5645 6099 0.459063 CGGTGGCGGGACTACTTTAC 60.459 60.000 0.00 0.00 0.00 2.01
5646 6100 0.900421 GGTGGCGGGACTACTTTACT 59.100 55.000 0.00 0.00 0.00 2.24
5647 6101 1.277273 GGTGGCGGGACTACTTTACTT 59.723 52.381 0.00 0.00 0.00 2.24
5648 6102 2.614779 GTGGCGGGACTACTTTACTTC 58.385 52.381 0.00 0.00 0.00 3.01
5649 6103 2.233186 GTGGCGGGACTACTTTACTTCT 59.767 50.000 0.00 0.00 0.00 2.85
5650 6104 2.494870 TGGCGGGACTACTTTACTTCTC 59.505 50.000 0.00 0.00 0.00 2.87
5651 6105 2.479219 GGCGGGACTACTTTACTTCTCG 60.479 54.545 0.00 0.00 34.99 4.04
5652 6106 2.795117 CGGGACTACTTTACTTCTCGC 58.205 52.381 0.00 0.00 0.00 5.03
5653 6107 2.479219 CGGGACTACTTTACTTCTCGCC 60.479 54.545 0.00 0.00 0.00 5.54
5654 6108 2.759535 GGGACTACTTTACTTCTCGCCT 59.240 50.000 0.00 0.00 0.00 5.52
5655 6109 3.195182 GGGACTACTTTACTTCTCGCCTT 59.805 47.826 0.00 0.00 0.00 4.35
5656 6110 4.174762 GGACTACTTTACTTCTCGCCTTG 58.825 47.826 0.00 0.00 0.00 3.61
5657 6111 4.321824 GGACTACTTTACTTCTCGCCTTGT 60.322 45.833 0.00 0.00 0.00 3.16
5658 6112 4.807443 ACTACTTTACTTCTCGCCTTGTC 58.193 43.478 0.00 0.00 0.00 3.18
5659 6113 4.523558 ACTACTTTACTTCTCGCCTTGTCT 59.476 41.667 0.00 0.00 0.00 3.41
5660 6114 5.709164 ACTACTTTACTTCTCGCCTTGTCTA 59.291 40.000 0.00 0.00 0.00 2.59
5661 6115 5.061920 ACTTTACTTCTCGCCTTGTCTAG 57.938 43.478 0.00 0.00 0.00 2.43
5662 6116 4.523558 ACTTTACTTCTCGCCTTGTCTAGT 59.476 41.667 0.00 0.00 0.00 2.57
5663 6117 5.010820 ACTTTACTTCTCGCCTTGTCTAGTT 59.989 40.000 0.00 0.00 0.00 2.24
5664 6118 5.464030 TTACTTCTCGCCTTGTCTAGTTT 57.536 39.130 0.00 0.00 0.00 2.66
5665 6119 3.654414 ACTTCTCGCCTTGTCTAGTTTG 58.346 45.455 0.00 0.00 0.00 2.93
5666 6120 2.080286 TCTCGCCTTGTCTAGTTTGC 57.920 50.000 0.00 0.00 0.00 3.68
5667 6121 1.079503 CTCGCCTTGTCTAGTTTGCC 58.920 55.000 0.00 0.00 0.00 4.52
5668 6122 0.669318 TCGCCTTGTCTAGTTTGCCG 60.669 55.000 0.00 0.00 0.00 5.69
5669 6123 0.669318 CGCCTTGTCTAGTTTGCCGA 60.669 55.000 0.00 0.00 0.00 5.54
5670 6124 1.519408 GCCTTGTCTAGTTTGCCGAA 58.481 50.000 0.00 0.00 0.00 4.30
5671 6125 1.877443 GCCTTGTCTAGTTTGCCGAAA 59.123 47.619 0.00 0.00 0.00 3.46
5672 6126 2.292292 GCCTTGTCTAGTTTGCCGAAAA 59.708 45.455 0.00 0.00 0.00 2.29
5673 6127 3.243267 GCCTTGTCTAGTTTGCCGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
5674 6128 4.537015 CCTTGTCTAGTTTGCCGAAAAAG 58.463 43.478 0.00 0.00 0.00 2.27
5675 6129 4.537015 CTTGTCTAGTTTGCCGAAAAAGG 58.463 43.478 0.00 0.00 0.00 3.11
5676 6130 3.811083 TGTCTAGTTTGCCGAAAAAGGA 58.189 40.909 0.00 0.00 0.00 3.36
5677 6131 4.394729 TGTCTAGTTTGCCGAAAAAGGAT 58.605 39.130 0.00 0.00 0.00 3.24
5678 6132 4.825085 TGTCTAGTTTGCCGAAAAAGGATT 59.175 37.500 0.00 0.00 0.00 3.01
5679 6133 5.300792 TGTCTAGTTTGCCGAAAAAGGATTT 59.699 36.000 0.00 0.00 42.41 2.17
5680 6134 5.856986 GTCTAGTTTGCCGAAAAAGGATTTC 59.143 40.000 0.00 0.00 37.28 2.17
5682 6136 2.058913 TTGCCGAAAAAGGATTTCGC 57.941 45.000 15.65 12.09 46.89 4.70
5683 6137 0.242555 TGCCGAAAAAGGATTTCGCC 59.757 50.000 15.65 7.43 46.89 5.54
5684 6138 0.457853 GCCGAAAAAGGATTTCGCCC 60.458 55.000 15.65 7.00 46.89 6.13
5685 6139 0.172578 CCGAAAAAGGATTTCGCCCC 59.827 55.000 15.65 0.00 46.89 5.80
5686 6140 0.179174 CGAAAAAGGATTTCGCCCCG 60.179 55.000 9.95 0.00 43.52 5.73
5687 6141 0.457853 GAAAAAGGATTTCGCCCCGC 60.458 55.000 0.00 0.00 37.28 6.13
5688 6142 0.898326 AAAAAGGATTTCGCCCCGCT 60.898 50.000 0.00 0.00 37.28 5.52
5689 6143 0.898326 AAAAGGATTTCGCCCCGCTT 60.898 50.000 0.00 0.00 37.28 4.68
5690 6144 0.898326 AAAGGATTTCGCCCCGCTTT 60.898 50.000 0.00 0.00 27.08 3.51
5691 6145 0.034863 AAGGATTTCGCCCCGCTTTA 60.035 50.000 0.00 0.00 0.00 1.85
5692 6146 0.182775 AGGATTTCGCCCCGCTTTAT 59.817 50.000 0.00 0.00 0.00 1.40
5693 6147 1.418637 AGGATTTCGCCCCGCTTTATA 59.581 47.619 0.00 0.00 0.00 0.98
5694 6148 2.039879 AGGATTTCGCCCCGCTTTATAT 59.960 45.455 0.00 0.00 0.00 0.86
5695 6149 3.262405 AGGATTTCGCCCCGCTTTATATA 59.738 43.478 0.00 0.00 0.00 0.86
5696 6150 4.080526 AGGATTTCGCCCCGCTTTATATAT 60.081 41.667 0.00 0.00 0.00 0.86
5697 6151 5.129815 AGGATTTCGCCCCGCTTTATATATA 59.870 40.000 0.00 0.00 0.00 0.86
5698 6152 5.818857 GGATTTCGCCCCGCTTTATATATAA 59.181 40.000 0.81 0.81 0.00 0.98
5699 6153 6.316890 GGATTTCGCCCCGCTTTATATATAAA 59.683 38.462 15.47 15.47 0.00 1.40
5700 6154 7.148205 GGATTTCGCCCCGCTTTATATATAAAA 60.148 37.037 16.69 1.58 32.39 1.52
5701 6155 6.484818 TTCGCCCCGCTTTATATATAAAAC 57.515 37.500 16.69 12.33 32.39 2.43
5702 6156 5.549347 TCGCCCCGCTTTATATATAAAACA 58.451 37.500 16.69 0.00 32.39 2.83
5703 6157 5.996513 TCGCCCCGCTTTATATATAAAACAA 59.003 36.000 16.69 0.00 32.39 2.83
5704 6158 6.485984 TCGCCCCGCTTTATATATAAAACAAA 59.514 34.615 16.69 0.00 32.39 2.83
5705 6159 6.799925 CGCCCCGCTTTATATATAAAACAAAG 59.200 38.462 16.69 9.22 32.39 2.77
5706 6160 7.308109 CGCCCCGCTTTATATATAAAACAAAGA 60.308 37.037 16.69 0.00 32.39 2.52
5707 6161 8.520351 GCCCCGCTTTATATATAAAACAAAGAT 58.480 33.333 16.69 0.00 32.39 2.40
5719 6173 5.867903 AAAACAAAGATCCACAACATCCA 57.132 34.783 0.00 0.00 0.00 3.41
5720 6174 5.867903 AAACAAAGATCCACAACATCCAA 57.132 34.783 0.00 0.00 0.00 3.53
5721 6175 6.423776 AAACAAAGATCCACAACATCCAAT 57.576 33.333 0.00 0.00 0.00 3.16
5722 6176 7.537596 AAACAAAGATCCACAACATCCAATA 57.462 32.000 0.00 0.00 0.00 1.90
5723 6177 6.515272 ACAAAGATCCACAACATCCAATAC 57.485 37.500 0.00 0.00 0.00 1.89
5724 6178 6.009589 ACAAAGATCCACAACATCCAATACA 58.990 36.000 0.00 0.00 0.00 2.29
5725 6179 6.493115 ACAAAGATCCACAACATCCAATACAA 59.507 34.615 0.00 0.00 0.00 2.41
5726 6180 7.015098 ACAAAGATCCACAACATCCAATACAAA 59.985 33.333 0.00 0.00 0.00 2.83
5727 6181 6.515272 AGATCCACAACATCCAATACAAAC 57.485 37.500 0.00 0.00 0.00 2.93
5728 6182 4.757799 TCCACAACATCCAATACAAACG 57.242 40.909 0.00 0.00 0.00 3.60
5729 6183 3.057876 TCCACAACATCCAATACAAACGC 60.058 43.478 0.00 0.00 0.00 4.84
5730 6184 3.304996 CCACAACATCCAATACAAACGCA 60.305 43.478 0.00 0.00 0.00 5.24
5731 6185 3.668191 CACAACATCCAATACAAACGCAC 59.332 43.478 0.00 0.00 0.00 5.34
5732 6186 3.316588 ACAACATCCAATACAAACGCACA 59.683 39.130 0.00 0.00 0.00 4.57
5733 6187 3.552604 ACATCCAATACAAACGCACAC 57.447 42.857 0.00 0.00 0.00 3.82
5734 6188 2.227865 ACATCCAATACAAACGCACACC 59.772 45.455 0.00 0.00 0.00 4.16
5735 6189 1.968704 TCCAATACAAACGCACACCA 58.031 45.000 0.00 0.00 0.00 4.17
5736 6190 2.298610 TCCAATACAAACGCACACCAA 58.701 42.857 0.00 0.00 0.00 3.67
5737 6191 2.033550 TCCAATACAAACGCACACCAAC 59.966 45.455 0.00 0.00 0.00 3.77
5738 6192 2.223595 CCAATACAAACGCACACCAACA 60.224 45.455 0.00 0.00 0.00 3.33
5739 6193 2.766970 ATACAAACGCACACCAACAC 57.233 45.000 0.00 0.00 0.00 3.32
5740 6194 0.733729 TACAAACGCACACCAACACC 59.266 50.000 0.00 0.00 0.00 4.16
5741 6195 1.244697 ACAAACGCACACCAACACCA 61.245 50.000 0.00 0.00 0.00 4.17
5742 6196 0.800300 CAAACGCACACCAACACCAC 60.800 55.000 0.00 0.00 0.00 4.16
5743 6197 1.244697 AAACGCACACCAACACCACA 61.245 50.000 0.00 0.00 0.00 4.17
5744 6198 1.928706 AACGCACACCAACACCACAC 61.929 55.000 0.00 0.00 0.00 3.82
5745 6199 2.402572 CGCACACCAACACCACACA 61.403 57.895 0.00 0.00 0.00 3.72
5746 6200 1.138671 GCACACCAACACCACACAC 59.861 57.895 0.00 0.00 0.00 3.82
5747 6201 1.590610 GCACACCAACACCACACACA 61.591 55.000 0.00 0.00 0.00 3.72
5748 6202 0.170116 CACACCAACACCACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
5749 6203 0.037590 ACACCAACACCACACACACT 59.962 50.000 0.00 0.00 0.00 3.55
5750 6204 0.732571 CACCAACACCACACACACTC 59.267 55.000 0.00 0.00 0.00 3.51
5751 6205 0.326595 ACCAACACCACACACACTCA 59.673 50.000 0.00 0.00 0.00 3.41
5752 6206 1.271652 ACCAACACCACACACACTCAA 60.272 47.619 0.00 0.00 0.00 3.02
5753 6207 1.401552 CCAACACCACACACACTCAAG 59.598 52.381 0.00 0.00 0.00 3.02
5754 6208 1.401552 CAACACCACACACACTCAAGG 59.598 52.381 0.00 0.00 0.00 3.61
5755 6209 0.748005 ACACCACACACACTCAAGGC 60.748 55.000 0.00 0.00 0.00 4.35
5756 6210 0.747644 CACCACACACACTCAAGGCA 60.748 55.000 0.00 0.00 0.00 4.75
5757 6211 0.464373 ACCACACACACTCAAGGCAG 60.464 55.000 0.00 0.00 0.00 4.85
5758 6212 1.168407 CCACACACACTCAAGGCAGG 61.168 60.000 0.00 0.00 0.00 4.85
5759 6213 0.179048 CACACACACTCAAGGCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
5760 6214 0.767375 ACACACACTCAAGGCAGGAT 59.233 50.000 0.00 0.00 0.00 3.24
5761 6215 1.977854 ACACACACTCAAGGCAGGATA 59.022 47.619 0.00 0.00 0.00 2.59
5762 6216 2.289694 ACACACACTCAAGGCAGGATAC 60.290 50.000 0.00 0.00 0.00 2.24
5763 6217 1.977854 ACACACTCAAGGCAGGATACA 59.022 47.619 0.00 0.00 41.41 2.29
5764 6218 2.371841 ACACACTCAAGGCAGGATACAA 59.628 45.455 0.00 0.00 41.41 2.41
5765 6219 3.181445 ACACACTCAAGGCAGGATACAAA 60.181 43.478 0.00 0.00 41.41 2.83
5766 6220 3.820467 CACACTCAAGGCAGGATACAAAA 59.180 43.478 0.00 0.00 41.41 2.44
5767 6221 4.074970 ACACTCAAGGCAGGATACAAAAG 58.925 43.478 0.00 0.00 41.41 2.27
5768 6222 3.084786 ACTCAAGGCAGGATACAAAAGC 58.915 45.455 0.00 0.00 41.41 3.51
5769 6223 2.083774 TCAAGGCAGGATACAAAAGCG 58.916 47.619 0.00 0.00 41.41 4.68
5770 6224 0.811281 AAGGCAGGATACAAAAGCGC 59.189 50.000 0.00 0.00 41.41 5.92
5771 6225 0.035056 AGGCAGGATACAAAAGCGCT 60.035 50.000 2.64 2.64 41.41 5.92
5772 6226 0.099436 GGCAGGATACAAAAGCGCTG 59.901 55.000 12.58 0.89 41.41 5.18
5773 6227 1.086696 GCAGGATACAAAAGCGCTGA 58.913 50.000 12.58 0.00 41.41 4.26
5774 6228 1.468520 GCAGGATACAAAAGCGCTGAA 59.531 47.619 12.58 0.00 41.41 3.02
5775 6229 2.729156 GCAGGATACAAAAGCGCTGAAC 60.729 50.000 12.58 0.00 41.41 3.18
5776 6230 1.732259 AGGATACAAAAGCGCTGAACG 59.268 47.619 12.58 2.23 43.03 3.95
5787 6241 3.419828 CTGAACGCAGCAACACCA 58.580 55.556 0.00 0.00 34.95 4.17
5788 6242 1.009675 CTGAACGCAGCAACACCAC 60.010 57.895 0.00 0.00 34.95 4.16
5789 6243 2.331451 GAACGCAGCAACACCACC 59.669 61.111 0.00 0.00 0.00 4.61
5790 6244 3.194272 GAACGCAGCAACACCACCC 62.194 63.158 0.00 0.00 0.00 4.61
5792 6246 4.954970 CGCAGCAACACCACCCCT 62.955 66.667 0.00 0.00 0.00 4.79
5793 6247 2.434331 GCAGCAACACCACCCCTA 59.566 61.111 0.00 0.00 0.00 3.53
5794 6248 1.675641 GCAGCAACACCACCCCTAG 60.676 63.158 0.00 0.00 0.00 3.02
5795 6249 1.675641 CAGCAACACCACCCCTAGC 60.676 63.158 0.00 0.00 0.00 3.42
5796 6250 2.153401 AGCAACACCACCCCTAGCA 61.153 57.895 0.00 0.00 0.00 3.49
5797 6251 1.971695 GCAACACCACCCCTAGCAC 60.972 63.158 0.00 0.00 0.00 4.40
5798 6252 1.454104 CAACACCACCCCTAGCACA 59.546 57.895 0.00 0.00 0.00 4.57
5799 6253 0.889186 CAACACCACCCCTAGCACAC 60.889 60.000 0.00 0.00 0.00 3.82
5800 6254 1.060163 AACACCACCCCTAGCACACT 61.060 55.000 0.00 0.00 0.00 3.55
5801 6255 0.178915 ACACCACCCCTAGCACACTA 60.179 55.000 0.00 0.00 0.00 2.74
5802 6256 1.204146 CACCACCCCTAGCACACTAT 58.796 55.000 0.00 0.00 0.00 2.12
5803 6257 1.139058 CACCACCCCTAGCACACTATC 59.861 57.143 0.00 0.00 0.00 2.08
5804 6258 1.273609 ACCACCCCTAGCACACTATCA 60.274 52.381 0.00 0.00 0.00 2.15
5805 6259 1.139058 CCACCCCTAGCACACTATCAC 59.861 57.143 0.00 0.00 0.00 3.06
5806 6260 1.112113 ACCCCTAGCACACTATCACG 58.888 55.000 0.00 0.00 0.00 4.35
5807 6261 1.341679 ACCCCTAGCACACTATCACGA 60.342 52.381 0.00 0.00 0.00 4.35
5808 6262 1.754803 CCCCTAGCACACTATCACGAA 59.245 52.381 0.00 0.00 0.00 3.85
5809 6263 2.223829 CCCCTAGCACACTATCACGAAG 60.224 54.545 0.00 0.00 0.00 3.79
5810 6264 2.688446 CCCTAGCACACTATCACGAAGA 59.312 50.000 0.00 0.00 0.00 2.87
5811 6265 3.243234 CCCTAGCACACTATCACGAAGAG 60.243 52.174 0.00 0.00 0.00 2.85
5812 6266 3.628032 CCTAGCACACTATCACGAAGAGA 59.372 47.826 0.00 0.00 0.00 3.10
5813 6267 4.277174 CCTAGCACACTATCACGAAGAGAT 59.723 45.833 0.00 0.00 41.51 2.75
5814 6268 4.039151 AGCACACTATCACGAAGAGATG 57.961 45.455 0.00 0.00 38.51 2.90
5815 6269 3.696548 AGCACACTATCACGAAGAGATGA 59.303 43.478 0.00 0.00 38.51 2.92
5816 6270 4.158579 AGCACACTATCACGAAGAGATGAA 59.841 41.667 0.00 0.00 38.51 2.57
5817 6271 4.502282 GCACACTATCACGAAGAGATGAAG 59.498 45.833 0.00 0.00 38.51 3.02
5818 6272 4.502282 CACACTATCACGAAGAGATGAAGC 59.498 45.833 0.00 0.00 38.51 3.86
5819 6273 4.047822 CACTATCACGAAGAGATGAAGCC 58.952 47.826 0.00 0.00 38.51 4.35
5820 6274 2.215907 ATCACGAAGAGATGAAGCCG 57.784 50.000 0.00 0.00 36.27 5.52
5821 6275 0.458543 TCACGAAGAGATGAAGCCGC 60.459 55.000 0.00 0.00 0.00 6.53
5822 6276 0.737367 CACGAAGAGATGAAGCCGCA 60.737 55.000 0.00 0.00 0.00 5.69
5823 6277 0.176680 ACGAAGAGATGAAGCCGCAT 59.823 50.000 0.00 0.00 0.00 4.73
5824 6278 1.409064 ACGAAGAGATGAAGCCGCATA 59.591 47.619 0.00 0.00 0.00 3.14
5825 6279 2.036475 ACGAAGAGATGAAGCCGCATAT 59.964 45.455 0.00 0.00 0.00 1.78
5826 6280 3.255888 ACGAAGAGATGAAGCCGCATATA 59.744 43.478 0.00 0.00 0.00 0.86
5827 6281 4.237724 CGAAGAGATGAAGCCGCATATAA 58.762 43.478 0.00 0.00 0.00 0.98
5828 6282 4.090642 CGAAGAGATGAAGCCGCATATAAC 59.909 45.833 0.00 0.00 0.00 1.89
5829 6283 3.579709 AGAGATGAAGCCGCATATAACG 58.420 45.455 0.00 0.00 0.00 3.18
5830 6284 3.255888 AGAGATGAAGCCGCATATAACGA 59.744 43.478 0.00 0.00 0.00 3.85
5831 6285 3.987868 GAGATGAAGCCGCATATAACGAA 59.012 43.478 0.00 0.00 0.00 3.85
5832 6286 3.741344 AGATGAAGCCGCATATAACGAAC 59.259 43.478 0.00 0.00 0.00 3.95
5833 6287 2.206750 TGAAGCCGCATATAACGAACC 58.793 47.619 0.00 0.00 0.00 3.62
5834 6288 1.191647 GAAGCCGCATATAACGAACCG 59.808 52.381 0.00 0.00 0.00 4.44
5835 6289 0.103572 AGCCGCATATAACGAACCGT 59.896 50.000 0.00 0.00 43.97 4.83
5836 6290 0.231279 GCCGCATATAACGAACCGTG 59.769 55.000 0.00 0.00 39.99 4.94
5837 6291 1.842720 CCGCATATAACGAACCGTGA 58.157 50.000 0.00 0.00 39.99 4.35
5838 6292 2.195096 CCGCATATAACGAACCGTGAA 58.805 47.619 0.00 0.00 39.99 3.18
5839 6293 2.034339 CCGCATATAACGAACCGTGAAC 60.034 50.000 0.00 0.00 39.99 3.18
5840 6294 2.855963 CGCATATAACGAACCGTGAACT 59.144 45.455 0.00 0.00 39.99 3.01
5841 6295 3.061403 CGCATATAACGAACCGTGAACTC 60.061 47.826 0.00 0.00 39.99 3.01
5842 6296 3.244579 GCATATAACGAACCGTGAACTCC 59.755 47.826 0.00 0.00 39.99 3.85
5843 6297 4.426416 CATATAACGAACCGTGAACTCCA 58.574 43.478 0.00 0.00 39.99 3.86
5844 6298 2.886862 TAACGAACCGTGAACTCCAA 57.113 45.000 0.00 0.00 39.99 3.53
5845 6299 1.578583 AACGAACCGTGAACTCCAAG 58.421 50.000 0.00 0.00 39.99 3.61
5847 6301 1.566018 CGAACCGTGAACTCCAAGGC 61.566 60.000 0.00 0.00 46.59 4.35
5848 6302 1.566018 GAACCGTGAACTCCAAGGCG 61.566 60.000 0.00 0.00 46.59 5.52
5849 6303 2.742372 CCGTGAACTCCAAGGCGG 60.742 66.667 0.00 0.00 37.59 6.13
5850 6304 2.030562 CGTGAACTCCAAGGCGGT 59.969 61.111 0.00 0.00 35.57 5.68
5851 6305 2.317609 CGTGAACTCCAAGGCGGTG 61.318 63.158 0.00 0.00 35.57 4.94
5852 6306 2.281484 TGAACTCCAAGGCGGTGC 60.281 61.111 0.00 0.00 35.57 5.01
5862 6316 2.747855 GGCGGTGCCTTCAGGAAG 60.748 66.667 0.00 2.01 46.69 3.46
5873 6327 3.166489 CTTCAGGAAGGATACGACACC 57.834 52.381 1.01 0.00 46.39 4.16
5874 6328 1.100510 TCAGGAAGGATACGACACCG 58.899 55.000 0.00 0.00 46.39 4.94
5875 6329 0.102481 CAGGAAGGATACGACACCGG 59.898 60.000 0.00 0.00 46.39 5.28
5876 6330 0.033796 AGGAAGGATACGACACCGGA 60.034 55.000 9.46 0.00 46.39 5.14
5877 6331 0.384669 GGAAGGATACGACACCGGAG 59.615 60.000 9.46 1.26 46.39 4.63
5878 6332 1.101331 GAAGGATACGACACCGGAGT 58.899 55.000 9.46 6.23 46.39 3.85
5880 6334 1.664321 AGGATACGACACCGGAGTGC 61.664 60.000 10.03 0.23 46.03 4.40
5902 6356 4.916314 ACCGCCCGATCCGAGGAT 62.916 66.667 3.97 3.97 37.59 3.24
5903 6357 4.057428 CCGCCCGATCCGAGGATC 62.057 72.222 19.46 19.46 45.42 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.250553 AAACGCTGGATTCACCCGAA 60.251 50.000 0.00 0.00 38.00 4.30
41 42 3.369835 CGTGTCTTAAACGCTGGATTC 57.630 47.619 0.00 0.00 36.18 2.52
133 141 0.454957 GTTGTTTGCTGCGATGCGAT 60.455 50.000 0.00 0.00 35.36 4.58
136 144 0.110419 TACGTTGTTTGCTGCGATGC 60.110 50.000 0.00 0.00 0.00 3.91
586 594 4.154347 GCTGGAGTGAGGAGGCGG 62.154 72.222 0.00 0.00 0.00 6.13
587 595 2.654079 AAGCTGGAGTGAGGAGGCG 61.654 63.158 0.00 0.00 0.00 5.52
588 596 1.078567 CAAGCTGGAGTGAGGAGGC 60.079 63.158 0.00 0.00 0.00 4.70
589 597 1.601171 CCAAGCTGGAGTGAGGAGG 59.399 63.158 0.00 0.00 40.96 4.30
590 598 1.078567 GCCAAGCTGGAGTGAGGAG 60.079 63.158 6.40 0.00 40.96 3.69
591 599 2.596851 GGCCAAGCTGGAGTGAGGA 61.597 63.158 0.00 0.00 40.96 3.71
624 632 1.662044 CAGAAGCTGCCGCCTTTTT 59.338 52.632 0.00 0.00 36.60 1.94
625 633 2.270986 CCAGAAGCTGCCGCCTTTT 61.271 57.895 0.00 0.00 36.60 2.27
626 634 2.674380 CCAGAAGCTGCCGCCTTT 60.674 61.111 0.00 0.00 36.60 3.11
627 635 3.618780 CTCCAGAAGCTGCCGCCTT 62.619 63.158 0.00 0.00 36.60 4.35
628 636 4.093291 CTCCAGAAGCTGCCGCCT 62.093 66.667 0.00 0.00 36.60 5.52
629 637 4.087892 TCTCCAGAAGCTGCCGCC 62.088 66.667 0.00 0.00 36.60 6.13
630 638 2.511145 CTCTCCAGAAGCTGCCGC 60.511 66.667 0.00 0.00 0.00 6.53
631 639 2.186384 CCTCTCCAGAAGCTGCCG 59.814 66.667 0.00 0.00 0.00 5.69
632 640 1.521616 CTCCTCTCCAGAAGCTGCC 59.478 63.158 0.00 0.00 0.00 4.85
633 641 1.153389 GCTCCTCTCCAGAAGCTGC 60.153 63.158 0.00 0.00 0.00 5.25
634 642 1.141449 CGCTCCTCTCCAGAAGCTG 59.859 63.158 0.00 0.00 0.00 4.24
635 643 2.057408 CCGCTCCTCTCCAGAAGCT 61.057 63.158 0.07 0.00 0.00 3.74
636 644 2.498726 CCGCTCCTCTCCAGAAGC 59.501 66.667 0.00 0.00 0.00 3.86
637 645 3.087666 GCCCGCTCCTCTCCAGAAG 62.088 68.421 0.00 0.00 0.00 2.85
638 646 3.077556 GCCCGCTCCTCTCCAGAA 61.078 66.667 0.00 0.00 0.00 3.02
726 744 0.840722 AAGAAGAAGCGGGGAGGGAA 60.841 55.000 0.00 0.00 0.00 3.97
819 860 4.699522 AAGAGAACACGCGGGGCC 62.700 66.667 15.46 3.17 0.00 5.80
857 898 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
930 976 4.864334 GATCGTGCCAGGGCCAGG 62.864 72.222 11.26 11.26 41.09 4.45
931 977 4.864334 GGATCGTGCCAGGGCCAG 62.864 72.222 6.18 0.00 41.09 4.85
933 979 4.554036 GAGGATCGTGCCAGGGCC 62.554 72.222 8.02 0.00 41.09 5.80
1116 1168 3.491104 GGGGACTGACATCGATGAAGTAC 60.491 52.174 31.33 28.46 31.73 2.73
1140 1192 8.079809 TGATGATACGATAACGCAATAAAGAGA 58.920 33.333 0.00 0.00 43.96 3.10
1152 1215 4.613448 GCGAGACAGTGATGATACGATAAC 59.387 45.833 0.00 0.00 0.00 1.89
1158 1221 2.757686 TCGCGAGACAGTGATGATAC 57.242 50.000 3.71 0.00 33.31 2.24
1197 1262 4.612259 GCGATTCCATTCAAGAATCATCGG 60.612 45.833 19.62 9.25 46.56 4.18
1202 1267 2.603173 GCGGCGATTCCATTCAAGAATC 60.603 50.000 12.98 3.88 44.03 2.52
1203 1268 1.334869 GCGGCGATTCCATTCAAGAAT 59.665 47.619 12.98 0.00 36.66 2.40
1206 1271 1.010797 CGCGGCGATTCCATTCAAG 60.011 57.895 19.16 0.00 34.01 3.02
1207 1272 3.097672 CGCGGCGATTCCATTCAA 58.902 55.556 19.16 0.00 34.01 2.69
1208 1273 3.572539 GCGCGGCGATTCCATTCA 61.573 61.111 28.54 0.00 34.01 2.57
1251 1316 0.676466 AATGTCAATCGAAGCCGGCA 60.676 50.000 31.54 8.23 36.24 5.69
1271 1336 0.102300 ACCAGCAAAGCAACCGAAAC 59.898 50.000 0.00 0.00 0.00 2.78
1296 1361 2.646175 GCTGCACGTGAGGGACCTA 61.646 63.158 22.23 0.00 35.60 3.08
1340 1409 2.281692 ACCATGAGCACGCAAGCA 60.282 55.556 0.00 0.00 45.62 3.91
1547 1634 7.186021 ACGTTCATAAAACAACTCCAAGTAG 57.814 36.000 0.00 0.00 0.00 2.57
1553 1640 7.383300 ACACTACTACGTTCATAAAACAACTCC 59.617 37.037 0.00 0.00 0.00 3.85
1630 1717 9.132521 GCGTTTAAAGTAGTGATCTAAACACTA 57.867 33.333 0.00 0.00 45.10 2.74
1633 1720 8.086522 AGAGCGTTTAAAGTAGTGATCTAAACA 58.913 33.333 10.37 0.00 33.87 2.83
1666 1761 4.340381 TGTTAGCTACTCCCTCCGTAAATC 59.660 45.833 0.00 0.00 0.00 2.17
1673 1768 6.592870 ACAATTATTGTTAGCTACTCCCTCC 58.407 40.000 4.56 0.00 42.22 4.30
1743 1851 6.020678 GCAACTCATGTGTTTTGTCTGTTTAC 60.021 38.462 10.36 0.00 0.00 2.01
1921 2031 8.731275 AAGAACGAATACATCACCAATTCATA 57.269 30.769 0.00 0.00 31.37 2.15
1975 2086 6.855836 TCAGAATGCAGGTTTGATTATCAAC 58.144 36.000 7.19 3.48 33.60 3.18
1986 2097 3.094572 CCCATCTTTCAGAATGCAGGTT 58.905 45.455 0.00 0.00 34.76 3.50
2022 2134 3.443037 GTGCTAGTACATGACAGCAGAG 58.557 50.000 6.04 0.00 40.51 3.35
2076 2188 3.992943 TCCTGTTGTACATTACTGGGG 57.007 47.619 18.35 9.68 34.99 4.96
2103 2215 7.970061 GCAATCATGTTGAGCACTTTCTATTTA 59.030 33.333 10.87 0.00 0.00 1.40
2116 2228 1.736126 AGCTCGTGCAATCATGTTGAG 59.264 47.619 12.58 0.00 42.74 3.02
2131 2243 7.402811 TCCGACAAACAAATAATATAGCTCG 57.597 36.000 0.00 0.00 0.00 5.03
2316 2594 9.068008 CGTTAACATTTTGTTTGAGTGTACTTT 57.932 29.630 6.39 0.00 41.45 2.66
2405 2684 7.151308 TGCAAGAATAACCCAAAATGTTAGTG 58.849 34.615 0.00 0.00 32.15 2.74
2425 2706 1.287730 GACTGTCCAGACGCTGCAAG 61.288 60.000 0.00 0.00 0.00 4.01
2450 2731 8.893727 ACTGAAAACTTATGTAACAGATATGCC 58.106 33.333 0.00 0.00 0.00 4.40
2571 2852 9.988815 ATTAGTACAGCGAATATCAGAAGAATT 57.011 29.630 0.00 0.00 0.00 2.17
2653 2934 1.271656 GCTTTGCCAAACAGCTCATCT 59.728 47.619 0.00 0.00 0.00 2.90
2769 3052 6.072112 TCTGCACTGAGAAAAACCATAAAC 57.928 37.500 0.00 0.00 0.00 2.01
3145 3472 7.323052 TCACCTATTACCATATAATGTGCCA 57.677 36.000 0.00 0.00 0.00 4.92
3146 3473 8.807948 AATCACCTATTACCATATAATGTGCC 57.192 34.615 0.00 0.00 0.00 5.01
3156 3483 9.914834 TTTAACTGCTTAATCACCTATTACCAT 57.085 29.630 0.00 0.00 29.54 3.55
3157 3484 9.169592 GTTTAACTGCTTAATCACCTATTACCA 57.830 33.333 0.00 0.00 29.54 3.25
3158 3485 9.169592 TGTTTAACTGCTTAATCACCTATTACC 57.830 33.333 0.00 0.00 29.54 2.85
3160 3487 9.953565 ACTGTTTAACTGCTTAATCACCTATTA 57.046 29.630 1.90 0.00 0.00 0.98
3161 3488 8.863872 ACTGTTTAACTGCTTAATCACCTATT 57.136 30.769 1.90 0.00 0.00 1.73
3162 3489 9.379791 GTACTGTTTAACTGCTTAATCACCTAT 57.620 33.333 1.90 0.00 0.00 2.57
3163 3490 8.369424 TGTACTGTTTAACTGCTTAATCACCTA 58.631 33.333 1.90 0.00 0.00 3.08
3164 3491 7.221450 TGTACTGTTTAACTGCTTAATCACCT 58.779 34.615 1.90 0.00 0.00 4.00
3165 3492 7.429636 TGTACTGTTTAACTGCTTAATCACC 57.570 36.000 1.90 0.00 0.00 4.02
3231 3558 3.191371 AGGATGAAACATTTTGCGGAGAC 59.809 43.478 0.00 0.00 0.00 3.36
3522 3849 3.452474 AGCAGACAATGAAGACTATCGC 58.548 45.455 0.00 0.00 0.00 4.58
3642 3977 7.944729 TTATTCTGAAGCAAATTTAGCTCCT 57.055 32.000 13.22 2.40 42.53 3.69
4224 4577 6.425114 GTGATATCCATACTTAAGTGGCACAG 59.575 42.308 21.41 11.16 41.80 3.66
4267 4620 8.879342 AACATATACTCTGCAGAACTTACATC 57.121 34.615 18.85 0.00 0.00 3.06
4398 4752 2.883386 CTCAAAGCAGGGCATTATCCTC 59.117 50.000 0.00 0.00 31.06 3.71
4496 4856 3.420839 AAAGTTCAAGCGGACAACAAG 57.579 42.857 0.00 0.00 0.00 3.16
4502 4862 4.588278 GTGCATATAAAGTTCAAGCGGAC 58.412 43.478 0.00 0.00 0.00 4.79
4635 4995 4.401519 TCCTAGTGAAACGATTCCTACCAG 59.598 45.833 2.72 0.00 45.86 4.00
4647 5007 7.860872 CAGGTTAAAAACACATCCTAGTGAAAC 59.139 37.037 0.57 0.00 42.05 2.78
4676 5036 8.669243 AGCATAAGAGCATAACAAGAACTAAAC 58.331 33.333 0.00 0.00 36.85 2.01
4678 5038 8.792830 AAGCATAAGAGCATAACAAGAACTAA 57.207 30.769 0.00 0.00 36.85 2.24
4750 5163 0.875059 GTCGGGCTCAAAGAAACAGG 59.125 55.000 0.00 0.00 0.00 4.00
4802 5215 3.068873 TGCTAAAAATCACGGTTGCCTTT 59.931 39.130 0.00 0.00 0.00 3.11
4870 5283 1.600511 TACGCGACAGCTTCATCCCA 61.601 55.000 15.93 0.00 42.32 4.37
4875 5288 1.415374 GAGTTTACGCGACAGCTTCA 58.585 50.000 15.93 0.00 42.32 3.02
5135 5554 2.480419 CGGTTCCTGTTTACAGAAGCAG 59.520 50.000 11.35 0.00 46.59 4.24
5136 5555 2.489971 CGGTTCCTGTTTACAGAAGCA 58.510 47.619 11.35 0.00 46.59 3.91
5137 5556 1.197036 GCGGTTCCTGTTTACAGAAGC 59.803 52.381 11.35 11.18 46.59 3.86
5138 5557 1.804748 GGCGGTTCCTGTTTACAGAAG 59.195 52.381 11.35 0.00 46.59 2.85
5139 5558 1.874739 CGGCGGTTCCTGTTTACAGAA 60.875 52.381 11.35 1.87 46.59 3.02
5140 5559 0.320073 CGGCGGTTCCTGTTTACAGA 60.320 55.000 11.35 0.00 46.59 3.41
5188 5616 0.603707 CCGGCTATGATGGTGCGAAT 60.604 55.000 0.00 0.00 0.00 3.34
5318 5764 2.887151 AGGCTTACAACAGGCAAGAT 57.113 45.000 0.00 0.00 41.89 2.40
5324 5770 4.652822 AGAAAAGGTAGGCTTACAACAGG 58.347 43.478 8.39 0.00 0.00 4.00
5337 5783 3.562557 GCGGAACAGTGAAAGAAAAGGTA 59.437 43.478 0.00 0.00 0.00 3.08
5366 5812 1.899617 GGTGGCATCCCAAATGTGG 59.100 57.895 0.00 0.00 44.33 4.17
5457 5911 4.556233 AGAAAAAGAATAAAAGGCCACGC 58.444 39.130 5.01 0.00 0.00 5.34
5458 5912 8.026607 TGATAAGAAAAAGAATAAAAGGCCACG 58.973 33.333 5.01 0.00 0.00 4.94
5485 5939 1.202348 GAGCGTCCCAAATTTTCCAGG 59.798 52.381 0.00 0.00 0.00 4.45
5524 5978 5.373812 TCAGGGGGAGACATCTAAATTTC 57.626 43.478 0.00 0.00 0.00 2.17
5532 5986 3.648067 TGATTACATCAGGGGGAGACATC 59.352 47.826 0.00 0.00 33.59 3.06
5557 6011 2.736978 CGTGAGATCTGCAGTGATACC 58.263 52.381 14.67 0.44 0.00 2.73
5564 6018 1.082679 CCACAGCGTGAGATCTGCAG 61.083 60.000 7.63 7.63 35.23 4.41
5568 6022 0.814457 GAGACCACAGCGTGAGATCT 59.186 55.000 0.00 0.00 35.23 2.75
5580 6034 0.606604 TCTTAAGGCGGTGAGACCAC 59.393 55.000 1.85 0.00 38.47 4.16
5626 6080 0.459063 GTAAAGTAGTCCCGCCACCG 60.459 60.000 0.00 0.00 0.00 4.94
5627 6081 0.900421 AGTAAAGTAGTCCCGCCACC 59.100 55.000 0.00 0.00 0.00 4.61
5637 6091 5.061920 AGACAAGGCGAGAAGTAAAGTAG 57.938 43.478 0.00 0.00 0.00 2.57
5638 6092 5.709164 ACTAGACAAGGCGAGAAGTAAAGTA 59.291 40.000 0.00 0.00 0.00 2.24
5639 6093 4.523558 ACTAGACAAGGCGAGAAGTAAAGT 59.476 41.667 0.00 0.00 0.00 2.66
5640 6094 5.061920 ACTAGACAAGGCGAGAAGTAAAG 57.938 43.478 0.00 0.00 0.00 1.85
5641 6095 5.464030 AACTAGACAAGGCGAGAAGTAAA 57.536 39.130 0.00 0.00 0.00 2.01
5642 6096 5.227908 CAAACTAGACAAGGCGAGAAGTAA 58.772 41.667 0.00 0.00 0.00 2.24
5643 6097 4.806330 CAAACTAGACAAGGCGAGAAGTA 58.194 43.478 0.00 0.00 0.00 2.24
5644 6098 3.654414 CAAACTAGACAAGGCGAGAAGT 58.346 45.455 0.00 0.00 0.00 3.01
5645 6099 2.413453 GCAAACTAGACAAGGCGAGAAG 59.587 50.000 0.00 0.00 0.00 2.85
5646 6100 2.413837 GCAAACTAGACAAGGCGAGAA 58.586 47.619 0.00 0.00 0.00 2.87
5647 6101 1.337823 GGCAAACTAGACAAGGCGAGA 60.338 52.381 0.00 0.00 0.00 4.04
5648 6102 1.079503 GGCAAACTAGACAAGGCGAG 58.920 55.000 0.00 0.00 0.00 5.03
5649 6103 3.226884 GGCAAACTAGACAAGGCGA 57.773 52.632 0.00 0.00 0.00 5.54
5650 6104 1.787847 CGGCAAACTAGACAAGGCG 59.212 57.895 0.00 3.80 41.63 5.52
5651 6105 1.519408 TTCGGCAAACTAGACAAGGC 58.481 50.000 0.00 0.00 0.00 4.35
5652 6106 4.537015 CTTTTTCGGCAAACTAGACAAGG 58.463 43.478 0.00 0.00 0.00 3.61
5653 6107 4.274950 TCCTTTTTCGGCAAACTAGACAAG 59.725 41.667 0.00 0.00 0.00 3.16
5654 6108 4.200874 TCCTTTTTCGGCAAACTAGACAA 58.799 39.130 0.00 0.00 0.00 3.18
5655 6109 3.811083 TCCTTTTTCGGCAAACTAGACA 58.189 40.909 0.00 0.00 0.00 3.41
5656 6110 5.372547 AATCCTTTTTCGGCAAACTAGAC 57.627 39.130 0.00 0.00 0.00 2.59
5657 6111 5.334569 CGAAATCCTTTTTCGGCAAACTAGA 60.335 40.000 11.52 0.00 45.17 2.43
5658 6112 4.851558 CGAAATCCTTTTTCGGCAAACTAG 59.148 41.667 11.52 0.00 45.17 2.57
5659 6113 4.789784 CGAAATCCTTTTTCGGCAAACTA 58.210 39.130 11.52 0.00 45.17 2.24
5660 6114 3.638484 CGAAATCCTTTTTCGGCAAACT 58.362 40.909 11.52 0.00 45.17 2.66
5668 6122 0.457853 GCGGGGCGAAATCCTTTTTC 60.458 55.000 0.00 0.00 0.00 2.29
5669 6123 0.898326 AGCGGGGCGAAATCCTTTTT 60.898 50.000 0.00 0.00 0.00 1.94
5670 6124 0.898326 AAGCGGGGCGAAATCCTTTT 60.898 50.000 0.00 0.00 0.00 2.27
5671 6125 0.898326 AAAGCGGGGCGAAATCCTTT 60.898 50.000 0.00 0.00 0.00 3.11
5672 6126 0.034863 TAAAGCGGGGCGAAATCCTT 60.035 50.000 0.00 0.00 0.00 3.36
5673 6127 0.182775 ATAAAGCGGGGCGAAATCCT 59.817 50.000 0.00 0.00 0.00 3.24
5674 6128 1.886886 TATAAAGCGGGGCGAAATCC 58.113 50.000 0.00 0.00 0.00 3.01
5675 6129 6.913873 TTATATATAAAGCGGGGCGAAATC 57.086 37.500 2.56 0.00 0.00 2.17
5676 6130 7.175293 TGTTTTATATATAAAGCGGGGCGAAAT 59.825 33.333 20.48 0.00 36.59 2.17
5677 6131 6.485984 TGTTTTATATATAAAGCGGGGCGAAA 59.514 34.615 20.48 4.74 36.59 3.46
5678 6132 5.996513 TGTTTTATATATAAAGCGGGGCGAA 59.003 36.000 20.48 5.28 36.59 4.70
5679 6133 5.549347 TGTTTTATATATAAAGCGGGGCGA 58.451 37.500 20.48 5.82 36.59 5.54
5680 6134 5.866335 TGTTTTATATATAAAGCGGGGCG 57.134 39.130 20.48 0.00 36.59 6.13
5681 6135 7.878036 TCTTTGTTTTATATATAAAGCGGGGC 58.122 34.615 20.48 9.53 36.59 5.80
5693 6147 9.253832 TGGATGTTGTGGATCTTTGTTTTATAT 57.746 29.630 0.00 0.00 0.00 0.86
5694 6148 8.642935 TGGATGTTGTGGATCTTTGTTTTATA 57.357 30.769 0.00 0.00 0.00 0.98
5695 6149 7.537596 TGGATGTTGTGGATCTTTGTTTTAT 57.462 32.000 0.00 0.00 0.00 1.40
5696 6150 6.968263 TGGATGTTGTGGATCTTTGTTTTA 57.032 33.333 0.00 0.00 0.00 1.52
5697 6151 5.867903 TGGATGTTGTGGATCTTTGTTTT 57.132 34.783 0.00 0.00 0.00 2.43
5698 6152 5.867903 TTGGATGTTGTGGATCTTTGTTT 57.132 34.783 0.00 0.00 0.00 2.83
5699 6153 6.493115 TGTATTGGATGTTGTGGATCTTTGTT 59.507 34.615 0.00 0.00 0.00 2.83
5700 6154 6.009589 TGTATTGGATGTTGTGGATCTTTGT 58.990 36.000 0.00 0.00 0.00 2.83
5701 6155 6.513806 TGTATTGGATGTTGTGGATCTTTG 57.486 37.500 0.00 0.00 0.00 2.77
5702 6156 7.378181 GTTTGTATTGGATGTTGTGGATCTTT 58.622 34.615 0.00 0.00 0.00 2.52
5703 6157 6.349280 CGTTTGTATTGGATGTTGTGGATCTT 60.349 38.462 0.00 0.00 0.00 2.40
5704 6158 5.123820 CGTTTGTATTGGATGTTGTGGATCT 59.876 40.000 0.00 0.00 0.00 2.75
5705 6159 5.331902 CGTTTGTATTGGATGTTGTGGATC 58.668 41.667 0.00 0.00 0.00 3.36
5706 6160 4.380444 GCGTTTGTATTGGATGTTGTGGAT 60.380 41.667 0.00 0.00 0.00 3.41
5707 6161 3.057876 GCGTTTGTATTGGATGTTGTGGA 60.058 43.478 0.00 0.00 0.00 4.02
5708 6162 3.241701 GCGTTTGTATTGGATGTTGTGG 58.758 45.455 0.00 0.00 0.00 4.17
5709 6163 3.668191 GTGCGTTTGTATTGGATGTTGTG 59.332 43.478 0.00 0.00 0.00 3.33
5710 6164 3.316588 TGTGCGTTTGTATTGGATGTTGT 59.683 39.130 0.00 0.00 0.00 3.32
5711 6165 3.668191 GTGTGCGTTTGTATTGGATGTTG 59.332 43.478 0.00 0.00 0.00 3.33
5712 6166 3.305064 GGTGTGCGTTTGTATTGGATGTT 60.305 43.478 0.00 0.00 0.00 2.71
5713 6167 2.227865 GGTGTGCGTTTGTATTGGATGT 59.772 45.455 0.00 0.00 0.00 3.06
5714 6168 2.227626 TGGTGTGCGTTTGTATTGGATG 59.772 45.455 0.00 0.00 0.00 3.51
5715 6169 2.509569 TGGTGTGCGTTTGTATTGGAT 58.490 42.857 0.00 0.00 0.00 3.41
5716 6170 1.968704 TGGTGTGCGTTTGTATTGGA 58.031 45.000 0.00 0.00 0.00 3.53
5717 6171 2.223595 TGTTGGTGTGCGTTTGTATTGG 60.224 45.455 0.00 0.00 0.00 3.16
5718 6172 2.786578 GTGTTGGTGTGCGTTTGTATTG 59.213 45.455 0.00 0.00 0.00 1.90
5719 6173 2.223618 GGTGTTGGTGTGCGTTTGTATT 60.224 45.455 0.00 0.00 0.00 1.89
5720 6174 1.335496 GGTGTTGGTGTGCGTTTGTAT 59.665 47.619 0.00 0.00 0.00 2.29
5721 6175 0.733729 GGTGTTGGTGTGCGTTTGTA 59.266 50.000 0.00 0.00 0.00 2.41
5722 6176 1.244697 TGGTGTTGGTGTGCGTTTGT 61.245 50.000 0.00 0.00 0.00 2.83
5723 6177 0.800300 GTGGTGTTGGTGTGCGTTTG 60.800 55.000 0.00 0.00 0.00 2.93
5724 6178 1.244697 TGTGGTGTTGGTGTGCGTTT 61.245 50.000 0.00 0.00 0.00 3.60
5725 6179 1.675972 TGTGGTGTTGGTGTGCGTT 60.676 52.632 0.00 0.00 0.00 4.84
5726 6180 2.045829 TGTGGTGTTGGTGTGCGT 60.046 55.556 0.00 0.00 0.00 5.24
5727 6181 2.402572 TGTGTGGTGTTGGTGTGCG 61.403 57.895 0.00 0.00 0.00 5.34
5728 6182 1.138671 GTGTGTGGTGTTGGTGTGC 59.861 57.895 0.00 0.00 0.00 4.57
5729 6183 0.170116 GTGTGTGTGGTGTTGGTGTG 59.830 55.000 0.00 0.00 0.00 3.82
5730 6184 0.037590 AGTGTGTGTGGTGTTGGTGT 59.962 50.000 0.00 0.00 0.00 4.16
5731 6185 0.732571 GAGTGTGTGTGGTGTTGGTG 59.267 55.000 0.00 0.00 0.00 4.17
5732 6186 0.326595 TGAGTGTGTGTGGTGTTGGT 59.673 50.000 0.00 0.00 0.00 3.67
5733 6187 1.401552 CTTGAGTGTGTGTGGTGTTGG 59.598 52.381 0.00 0.00 0.00 3.77
5734 6188 1.401552 CCTTGAGTGTGTGTGGTGTTG 59.598 52.381 0.00 0.00 0.00 3.33
5735 6189 1.750193 CCTTGAGTGTGTGTGGTGTT 58.250 50.000 0.00 0.00 0.00 3.32
5736 6190 0.748005 GCCTTGAGTGTGTGTGGTGT 60.748 55.000 0.00 0.00 0.00 4.16
5737 6191 0.747644 TGCCTTGAGTGTGTGTGGTG 60.748 55.000 0.00 0.00 0.00 4.17
5738 6192 0.464373 CTGCCTTGAGTGTGTGTGGT 60.464 55.000 0.00 0.00 0.00 4.16
5739 6193 1.168407 CCTGCCTTGAGTGTGTGTGG 61.168 60.000 0.00 0.00 0.00 4.17
5740 6194 0.179048 TCCTGCCTTGAGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
5741 6195 0.767375 ATCCTGCCTTGAGTGTGTGT 59.233 50.000 0.00 0.00 0.00 3.72
5742 6196 2.289631 TGTATCCTGCCTTGAGTGTGTG 60.290 50.000 0.00 0.00 0.00 3.82
5743 6197 1.977854 TGTATCCTGCCTTGAGTGTGT 59.022 47.619 0.00 0.00 0.00 3.72
5744 6198 2.768253 TGTATCCTGCCTTGAGTGTG 57.232 50.000 0.00 0.00 0.00 3.82
5745 6199 3.788227 TTTGTATCCTGCCTTGAGTGT 57.212 42.857 0.00 0.00 0.00 3.55
5746 6200 3.119708 GCTTTTGTATCCTGCCTTGAGTG 60.120 47.826 0.00 0.00 0.00 3.51
5747 6201 3.084786 GCTTTTGTATCCTGCCTTGAGT 58.915 45.455 0.00 0.00 0.00 3.41
5748 6202 2.096496 CGCTTTTGTATCCTGCCTTGAG 59.904 50.000 0.00 0.00 0.00 3.02
5749 6203 2.083774 CGCTTTTGTATCCTGCCTTGA 58.916 47.619 0.00 0.00 0.00 3.02
5750 6204 1.468054 GCGCTTTTGTATCCTGCCTTG 60.468 52.381 0.00 0.00 0.00 3.61
5751 6205 0.811281 GCGCTTTTGTATCCTGCCTT 59.189 50.000 0.00 0.00 0.00 4.35
5752 6206 0.035056 AGCGCTTTTGTATCCTGCCT 60.035 50.000 2.64 0.00 0.00 4.75
5753 6207 0.099436 CAGCGCTTTTGTATCCTGCC 59.901 55.000 7.50 0.00 0.00 4.85
5754 6208 1.086696 TCAGCGCTTTTGTATCCTGC 58.913 50.000 7.50 0.00 0.00 4.85
5755 6209 2.474526 CGTTCAGCGCTTTTGTATCCTG 60.475 50.000 7.50 0.00 0.00 3.86
5756 6210 1.732259 CGTTCAGCGCTTTTGTATCCT 59.268 47.619 7.50 0.00 0.00 3.24
5757 6211 2.159467 CGTTCAGCGCTTTTGTATCC 57.841 50.000 7.50 0.00 0.00 2.59
5770 6224 1.009675 GTGGTGTTGCTGCGTTCAG 60.010 57.895 0.00 0.00 43.16 3.02
5771 6225 2.477176 GGTGGTGTTGCTGCGTTCA 61.477 57.895 0.00 0.00 0.00 3.18
5772 6226 2.331451 GGTGGTGTTGCTGCGTTC 59.669 61.111 0.00 0.00 0.00 3.95
5773 6227 3.216292 GGGTGGTGTTGCTGCGTT 61.216 61.111 0.00 0.00 0.00 4.84
5775 6229 3.545124 TAGGGGTGGTGTTGCTGCG 62.545 63.158 0.00 0.00 0.00 5.18
5776 6230 1.675641 CTAGGGGTGGTGTTGCTGC 60.676 63.158 0.00 0.00 0.00 5.25
5777 6231 1.675641 GCTAGGGGTGGTGTTGCTG 60.676 63.158 0.00 0.00 0.00 4.41
5778 6232 2.153401 TGCTAGGGGTGGTGTTGCT 61.153 57.895 0.00 0.00 0.00 3.91
5779 6233 1.971695 GTGCTAGGGGTGGTGTTGC 60.972 63.158 0.00 0.00 0.00 4.17
5780 6234 0.889186 GTGTGCTAGGGGTGGTGTTG 60.889 60.000 0.00 0.00 0.00 3.33
5781 6235 1.060163 AGTGTGCTAGGGGTGGTGTT 61.060 55.000 0.00 0.00 0.00 3.32
5782 6236 0.178915 TAGTGTGCTAGGGGTGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
5783 6237 1.139058 GATAGTGTGCTAGGGGTGGTG 59.861 57.143 0.00 0.00 0.00 4.17
5784 6238 1.273609 TGATAGTGTGCTAGGGGTGGT 60.274 52.381 0.00 0.00 0.00 4.16
5785 6239 1.139058 GTGATAGTGTGCTAGGGGTGG 59.861 57.143 0.00 0.00 0.00 4.61
5786 6240 1.202417 CGTGATAGTGTGCTAGGGGTG 60.202 57.143 0.00 0.00 0.00 4.61
5787 6241 1.112113 CGTGATAGTGTGCTAGGGGT 58.888 55.000 0.00 0.00 0.00 4.95
5788 6242 1.399714 TCGTGATAGTGTGCTAGGGG 58.600 55.000 0.00 0.00 0.00 4.79
5789 6243 2.688446 TCTTCGTGATAGTGTGCTAGGG 59.312 50.000 0.00 0.00 0.00 3.53
5790 6244 3.628032 TCTCTTCGTGATAGTGTGCTAGG 59.372 47.826 0.00 0.00 0.00 3.02
5791 6245 4.884458 TCTCTTCGTGATAGTGTGCTAG 57.116 45.455 0.00 0.00 0.00 3.42
5792 6246 4.881850 TCATCTCTTCGTGATAGTGTGCTA 59.118 41.667 0.00 0.00 0.00 3.49
5793 6247 3.696548 TCATCTCTTCGTGATAGTGTGCT 59.303 43.478 0.00 0.00 0.00 4.40
5794 6248 4.033990 TCATCTCTTCGTGATAGTGTGC 57.966 45.455 0.00 0.00 0.00 4.57
5795 6249 4.502282 GCTTCATCTCTTCGTGATAGTGTG 59.498 45.833 0.00 0.00 0.00 3.82
5796 6250 4.440802 GGCTTCATCTCTTCGTGATAGTGT 60.441 45.833 0.00 0.00 0.00 3.55
5797 6251 4.047822 GGCTTCATCTCTTCGTGATAGTG 58.952 47.826 0.00 0.00 0.00 2.74
5798 6252 3.243234 CGGCTTCATCTCTTCGTGATAGT 60.243 47.826 0.00 0.00 0.00 2.12
5799 6253 3.304257 CGGCTTCATCTCTTCGTGATAG 58.696 50.000 0.00 0.00 0.00 2.08
5800 6254 2.543861 GCGGCTTCATCTCTTCGTGATA 60.544 50.000 0.00 0.00 0.00 2.15
5801 6255 1.804372 GCGGCTTCATCTCTTCGTGAT 60.804 52.381 0.00 0.00 0.00 3.06
5802 6256 0.458543 GCGGCTTCATCTCTTCGTGA 60.459 55.000 0.00 0.00 0.00 4.35
5803 6257 0.737367 TGCGGCTTCATCTCTTCGTG 60.737 55.000 0.00 0.00 0.00 4.35
5804 6258 0.176680 ATGCGGCTTCATCTCTTCGT 59.823 50.000 0.00 0.00 0.00 3.85
5805 6259 2.140065 TATGCGGCTTCATCTCTTCG 57.860 50.000 0.00 0.00 0.00 3.79
5806 6260 4.090642 CGTTATATGCGGCTTCATCTCTTC 59.909 45.833 0.00 0.00 0.00 2.87
5807 6261 3.990469 CGTTATATGCGGCTTCATCTCTT 59.010 43.478 0.00 0.00 0.00 2.85
5808 6262 3.255888 TCGTTATATGCGGCTTCATCTCT 59.744 43.478 0.00 0.00 0.00 3.10
5809 6263 3.575630 TCGTTATATGCGGCTTCATCTC 58.424 45.455 0.00 0.00 0.00 2.75
5810 6264 3.660501 TCGTTATATGCGGCTTCATCT 57.339 42.857 0.00 0.00 0.00 2.90
5811 6265 3.120649 GGTTCGTTATATGCGGCTTCATC 60.121 47.826 0.00 0.00 0.00 2.92
5812 6266 2.806244 GGTTCGTTATATGCGGCTTCAT 59.194 45.455 0.00 0.00 0.00 2.57
5813 6267 2.206750 GGTTCGTTATATGCGGCTTCA 58.793 47.619 0.00 0.00 0.00 3.02
5814 6268 1.191647 CGGTTCGTTATATGCGGCTTC 59.808 52.381 0.00 0.00 0.00 3.86
5815 6269 1.214367 CGGTTCGTTATATGCGGCTT 58.786 50.000 0.00 0.00 0.00 4.35
5816 6270 0.103572 ACGGTTCGTTATATGCGGCT 59.896 50.000 0.00 0.00 36.35 5.52
5817 6271 0.231279 CACGGTTCGTTATATGCGGC 59.769 55.000 0.00 0.00 38.32 6.53
5818 6272 1.842720 TCACGGTTCGTTATATGCGG 58.157 50.000 0.00 0.00 38.32 5.69
5819 6273 2.855963 AGTTCACGGTTCGTTATATGCG 59.144 45.455 0.00 0.00 38.32 4.73
5820 6274 3.244579 GGAGTTCACGGTTCGTTATATGC 59.755 47.826 0.00 0.00 38.32 3.14
5821 6275 4.426416 TGGAGTTCACGGTTCGTTATATG 58.574 43.478 0.00 0.00 38.32 1.78
5822 6276 4.724074 TGGAGTTCACGGTTCGTTATAT 57.276 40.909 0.00 0.00 38.32 0.86
5823 6277 4.487948 CTTGGAGTTCACGGTTCGTTATA 58.512 43.478 0.00 0.00 38.32 0.98
5824 6278 3.323243 CTTGGAGTTCACGGTTCGTTAT 58.677 45.455 0.00 0.00 38.32 1.89
5825 6279 2.546373 CCTTGGAGTTCACGGTTCGTTA 60.546 50.000 0.00 0.00 38.32 3.18
5826 6280 1.578583 CTTGGAGTTCACGGTTCGTT 58.421 50.000 0.00 0.00 38.32 3.85
5827 6281 0.249741 CCTTGGAGTTCACGGTTCGT 60.250 55.000 0.00 0.00 42.36 3.85
5828 6282 1.566018 GCCTTGGAGTTCACGGTTCG 61.566 60.000 0.00 0.00 37.15 3.95
5829 6283 1.566018 CGCCTTGGAGTTCACGGTTC 61.566 60.000 0.00 0.00 37.15 3.62
5830 6284 1.597027 CGCCTTGGAGTTCACGGTT 60.597 57.895 0.00 0.00 37.15 4.44
5831 6285 2.030562 CGCCTTGGAGTTCACGGT 59.969 61.111 0.00 0.00 37.15 4.83
5832 6286 2.742372 CCGCCTTGGAGTTCACGG 60.742 66.667 0.00 0.00 42.00 4.94
5833 6287 2.030562 ACCGCCTTGGAGTTCACG 59.969 61.111 0.00 0.00 42.00 4.35
5834 6288 2.617274 GCACCGCCTTGGAGTTCAC 61.617 63.158 0.00 0.00 42.00 3.18
5835 6289 2.281484 GCACCGCCTTGGAGTTCA 60.281 61.111 0.00 0.00 42.00 3.18
5836 6290 3.056328 GGCACCGCCTTGGAGTTC 61.056 66.667 0.00 0.00 46.69 3.01
5853 6307 2.479730 CGGTGTCGTATCCTTCCTGAAG 60.480 54.545 0.00 0.00 38.14 3.02
5854 6308 1.475280 CGGTGTCGTATCCTTCCTGAA 59.525 52.381 0.00 0.00 0.00 3.02
5855 6309 1.100510 CGGTGTCGTATCCTTCCTGA 58.899 55.000 0.00 0.00 0.00 3.86
5856 6310 0.102481 CCGGTGTCGTATCCTTCCTG 59.898 60.000 0.00 0.00 33.95 3.86
5857 6311 0.033796 TCCGGTGTCGTATCCTTCCT 60.034 55.000 0.00 0.00 33.95 3.36
5858 6312 0.384669 CTCCGGTGTCGTATCCTTCC 59.615 60.000 0.00 0.00 33.95 3.46
5859 6313 1.101331 ACTCCGGTGTCGTATCCTTC 58.899 55.000 2.61 0.00 33.95 3.46
5860 6314 0.815734 CACTCCGGTGTCGTATCCTT 59.184 55.000 6.10 0.00 38.54 3.36
5861 6315 1.664321 GCACTCCGGTGTCGTATCCT 61.664 60.000 6.10 0.00 44.65 3.24
5862 6316 1.226888 GCACTCCGGTGTCGTATCC 60.227 63.158 6.10 0.00 44.65 2.59
5863 6317 1.226888 GGCACTCCGGTGTCGTATC 60.227 63.158 6.10 0.00 44.65 2.24
5864 6318 2.890371 GGCACTCCGGTGTCGTAT 59.110 61.111 6.10 0.00 44.65 3.06
5885 6339 4.916314 ATCCTCGGATCGGGCGGT 62.916 66.667 0.00 0.00 0.00 5.68
5886 6340 4.057428 GATCCTCGGATCGGGCGG 62.057 72.222 9.99 2.31 41.09 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.