Multiple sequence alignment - TraesCS1D01G279200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G279200 chr1D 100.000 2504 0 0 1 2504 376889619 376892122 0.000000e+00 4625.0
1 TraesCS1D01G279200 chr1D 75.479 261 38 11 207 465 377001789 377002025 1.230000e-18 104.0
2 TraesCS1D01G279200 chr2D 95.262 1393 34 12 506 1898 461536410 461537770 0.000000e+00 2178.0
3 TraesCS1D01G279200 chr2D 98.017 605 7 2 1900 2504 461540306 461540905 0.000000e+00 1046.0
4 TraesCS1D01G279200 chr7B 93.993 899 46 6 511 1407 641171760 641172652 0.000000e+00 1354.0
5 TraesCS1D01G279200 chr7B 96.705 607 14 4 1900 2504 641175618 641176220 0.000000e+00 1005.0
6 TraesCS1D01G279200 chr7B 94.650 486 25 1 1413 1898 641172602 641173086 0.000000e+00 752.0
7 TraesCS1D01G279200 chr7B 89.941 169 17 0 1730 1898 198977317 198977485 4.190000e-53 219.0
8 TraesCS1D01G279200 chr7B 85.217 115 17 0 1417 1531 688587600 688587486 4.380000e-23 119.0
9 TraesCS1D01G279200 chr4A 91.473 903 48 22 506 1407 736224915 736225789 0.000000e+00 1214.0
10 TraesCS1D01G279200 chr4A 93.586 608 30 4 1900 2504 736233746 736234347 0.000000e+00 898.0
11 TraesCS1D01G279200 chr4A 92.593 486 23 2 1413 1898 736225739 736226211 0.000000e+00 686.0
12 TraesCS1D01G279200 chr5B 91.716 169 12 1 1730 1898 475689796 475689962 1.500000e-57 233.0
13 TraesCS1D01G279200 chr5D 91.124 169 13 1 1730 1898 395263489 395263655 6.970000e-56 228.0
14 TraesCS1D01G279200 chr5D 85.000 60 6 3 506 564 15963690 15963747 9.670000e-05 58.4
15 TraesCS1D01G279200 chr4B 90.533 169 16 0 1730 1898 220282088 220281920 9.010000e-55 224.0
16 TraesCS1D01G279200 chr4B 88.125 160 14 3 1249 1408 409750428 409750274 4.250000e-43 185.0
17 TraesCS1D01G279200 chr4B 89.091 110 12 0 1482 1591 409750278 409750169 1.210000e-28 137.0
18 TraesCS1D01G279200 chr6B 89.941 169 17 0 1730 1898 624701057 624700889 4.190000e-53 219.0
19 TraesCS1D01G279200 chr6B 83.193 119 20 0 1413 1531 288940580 288940698 2.630000e-20 110.0
20 TraesCS1D01G279200 chr4D 86.503 163 17 3 1246 1408 331631289 331631446 9.210000e-40 174.0
21 TraesCS1D01G279200 chr4D 90.000 110 11 0 1482 1591 331631442 331631551 2.600000e-30 143.0
22 TraesCS1D01G279200 chr2A 83.333 162 18 4 1246 1407 21421483 21421635 9.340000e-30 141.0
23 TraesCS1D01G279200 chr7D 80.663 181 29 5 575 753 36472984 36473160 4.340000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G279200 chr1D 376889619 376892122 2503 False 4625 4625 100.0000 1 2504 1 chr1D.!!$F1 2503
1 TraesCS1D01G279200 chr2D 461536410 461540905 4495 False 1612 2178 96.6395 506 2504 2 chr2D.!!$F1 1998
2 TraesCS1D01G279200 chr7B 641171760 641176220 4460 False 1037 1354 95.1160 511 2504 3 chr7B.!!$F2 1993
3 TraesCS1D01G279200 chr4A 736224915 736226211 1296 False 950 1214 92.0330 506 1898 2 chr4A.!!$F2 1392
4 TraesCS1D01G279200 chr4A 736233746 736234347 601 False 898 898 93.5860 1900 2504 1 chr4A.!!$F1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.032952 GAAAACCCGGCCCAGAAAAC 59.967 55.0 0.0 0.0 0.00 2.43 F
464 465 0.045623 TGGAAAGATCCCCCAGCCTA 59.954 55.0 0.0 0.0 45.95 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1232 1241 1.429930 TGAGGGACAAGCAGGTACAA 58.570 50.000 0.00 0.00 0.00 2.41 R
1934 4509 2.425562 TAGCGCACTGGCTATAGCA 58.574 52.632 25.53 11.21 44.29 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.722342 TGAAAATAGAACTAAAACATGAACGC 57.278 30.769 0.00 0.00 0.00 4.84
34 35 8.346300 TGAAAATAGAACTAAAACATGAACGCA 58.654 29.630 0.00 0.00 0.00 5.24
35 36 9.176181 GAAAATAGAACTAAAACATGAACGCAA 57.824 29.630 0.00 0.00 0.00 4.85
36 37 9.522804 AAAATAGAACTAAAACATGAACGCAAA 57.477 25.926 0.00 0.00 0.00 3.68
37 38 9.522804 AAATAGAACTAAAACATGAACGCAAAA 57.477 25.926 0.00 0.00 0.00 2.44
38 39 9.522804 AATAGAACTAAAACATGAACGCAAAAA 57.477 25.926 0.00 0.00 0.00 1.94
67 68 9.478768 AAAAAGAGACGGAAAAGTAAAAACAAA 57.521 25.926 0.00 0.00 0.00 2.83
68 69 9.478768 AAAAGAGACGGAAAAGTAAAAACAAAA 57.521 25.926 0.00 0.00 0.00 2.44
69 70 9.478768 AAAGAGACGGAAAAGTAAAAACAAAAA 57.521 25.926 0.00 0.00 0.00 1.94
70 71 8.683550 AGAGACGGAAAAGTAAAAACAAAAAG 57.316 30.769 0.00 0.00 0.00 2.27
71 72 8.517056 AGAGACGGAAAAGTAAAAACAAAAAGA 58.483 29.630 0.00 0.00 0.00 2.52
72 73 8.683550 AGACGGAAAAGTAAAAACAAAAAGAG 57.316 30.769 0.00 0.00 0.00 2.85
73 74 8.517056 AGACGGAAAAGTAAAAACAAAAAGAGA 58.483 29.630 0.00 0.00 0.00 3.10
74 75 9.131416 GACGGAAAAGTAAAAACAAAAAGAGAA 57.869 29.630 0.00 0.00 0.00 2.87
75 76 9.478768 ACGGAAAAGTAAAAACAAAAAGAGAAA 57.521 25.926 0.00 0.00 0.00 2.52
76 77 9.952341 CGGAAAAGTAAAAACAAAAAGAGAAAG 57.048 29.630 0.00 0.00 0.00 2.62
83 84 9.302345 GTAAAAACAAAAAGAGAAAGAGGAAGG 57.698 33.333 0.00 0.00 0.00 3.46
84 85 6.471233 AAACAAAAAGAGAAAGAGGAAGGG 57.529 37.500 0.00 0.00 0.00 3.95
85 86 5.388599 ACAAAAAGAGAAAGAGGAAGGGA 57.611 39.130 0.00 0.00 0.00 4.20
86 87 5.766590 ACAAAAAGAGAAAGAGGAAGGGAA 58.233 37.500 0.00 0.00 0.00 3.97
87 88 6.194967 ACAAAAAGAGAAAGAGGAAGGGAAA 58.805 36.000 0.00 0.00 0.00 3.13
88 89 6.667848 ACAAAAAGAGAAAGAGGAAGGGAAAA 59.332 34.615 0.00 0.00 0.00 2.29
89 90 7.180229 ACAAAAAGAGAAAGAGGAAGGGAAAAA 59.820 33.333 0.00 0.00 0.00 1.94
112 113 8.880878 AAAACGCATTACCAAATAGAAAAACT 57.119 26.923 0.00 0.00 0.00 2.66
113 114 8.880878 AAACGCATTACCAAATAGAAAAACTT 57.119 26.923 0.00 0.00 0.00 2.66
114 115 7.867445 ACGCATTACCAAATAGAAAAACTTG 57.133 32.000 0.00 0.00 0.00 3.16
115 116 7.430441 ACGCATTACCAAATAGAAAAACTTGT 58.570 30.769 0.00 0.00 0.00 3.16
116 117 7.381139 ACGCATTACCAAATAGAAAAACTTGTG 59.619 33.333 0.00 0.00 0.00 3.33
117 118 7.509797 GCATTACCAAATAGAAAAACTTGTGC 58.490 34.615 0.00 0.00 0.00 4.57
118 119 7.170658 GCATTACCAAATAGAAAAACTTGTGCA 59.829 33.333 0.00 0.00 0.00 4.57
119 120 9.039870 CATTACCAAATAGAAAAACTTGTGCAA 57.960 29.630 0.00 0.00 0.00 4.08
120 121 9.606631 ATTACCAAATAGAAAAACTTGTGCAAA 57.393 25.926 0.00 0.00 0.00 3.68
121 122 7.913674 ACCAAATAGAAAAACTTGTGCAAAA 57.086 28.000 0.00 0.00 0.00 2.44
122 123 8.329203 ACCAAATAGAAAAACTTGTGCAAAAA 57.671 26.923 0.00 0.00 0.00 1.94
143 144 2.595124 AAAAACCTGCAGAAAACCCG 57.405 45.000 17.39 0.00 0.00 5.28
144 145 0.750249 AAAACCTGCAGAAAACCCGG 59.250 50.000 17.39 0.00 0.00 5.73
145 146 1.744320 AAACCTGCAGAAAACCCGGC 61.744 55.000 17.39 0.00 0.00 6.13
146 147 3.373565 CCTGCAGAAAACCCGGCC 61.374 66.667 17.39 0.00 0.00 6.13
147 148 3.373565 CTGCAGAAAACCCGGCCC 61.374 66.667 8.42 0.00 0.00 5.80
148 149 4.211330 TGCAGAAAACCCGGCCCA 62.211 61.111 0.00 0.00 0.00 5.36
149 150 3.373565 GCAGAAAACCCGGCCCAG 61.374 66.667 0.00 0.00 0.00 4.45
150 151 2.434331 CAGAAAACCCGGCCCAGA 59.566 61.111 0.00 0.00 0.00 3.86
151 152 1.228429 CAGAAAACCCGGCCCAGAA 60.228 57.895 0.00 0.00 0.00 3.02
152 153 0.825840 CAGAAAACCCGGCCCAGAAA 60.826 55.000 0.00 0.00 0.00 2.52
153 154 0.105913 AGAAAACCCGGCCCAGAAAA 60.106 50.000 0.00 0.00 0.00 2.29
154 155 0.032952 GAAAACCCGGCCCAGAAAAC 59.967 55.000 0.00 0.00 0.00 2.43
155 156 1.404479 AAAACCCGGCCCAGAAAACC 61.404 55.000 0.00 0.00 0.00 3.27
156 157 4.653888 ACCCGGCCCAGAAAACCG 62.654 66.667 0.00 0.00 46.50 4.44
157 158 4.653888 CCCGGCCCAGAAAACCGT 62.654 66.667 0.00 0.00 45.49 4.83
158 159 2.596338 CCGGCCCAGAAAACCGTT 60.596 61.111 0.00 0.00 45.49 4.44
159 160 1.302671 CCGGCCCAGAAAACCGTTA 60.303 57.895 0.00 0.00 45.49 3.18
160 161 1.303091 CCGGCCCAGAAAACCGTTAG 61.303 60.000 0.00 0.00 45.49 2.34
161 162 0.604511 CGGCCCAGAAAACCGTTAGT 60.605 55.000 0.00 0.00 42.01 2.24
162 163 0.879090 GGCCCAGAAAACCGTTAGTG 59.121 55.000 0.00 0.00 0.00 2.74
163 164 0.240145 GCCCAGAAAACCGTTAGTGC 59.760 55.000 0.00 0.00 0.00 4.40
164 165 1.600023 CCCAGAAAACCGTTAGTGCA 58.400 50.000 0.00 0.00 0.00 4.57
165 166 1.950909 CCCAGAAAACCGTTAGTGCAA 59.049 47.619 0.00 0.00 0.00 4.08
166 167 2.287368 CCCAGAAAACCGTTAGTGCAAC 60.287 50.000 0.00 0.00 0.00 4.17
167 168 2.356382 CCAGAAAACCGTTAGTGCAACA 59.644 45.455 0.00 0.00 41.43 3.33
168 169 3.004315 CCAGAAAACCGTTAGTGCAACAT 59.996 43.478 0.00 0.00 41.43 2.71
169 170 3.974401 CAGAAAACCGTTAGTGCAACATG 59.026 43.478 0.00 0.00 41.43 3.21
170 171 3.004315 AGAAAACCGTTAGTGCAACATGG 59.996 43.478 0.00 0.00 41.43 3.66
171 172 1.243902 AACCGTTAGTGCAACATGGG 58.756 50.000 0.00 0.00 41.43 4.00
172 173 0.109723 ACCGTTAGTGCAACATGGGT 59.890 50.000 0.00 0.00 41.43 4.51
173 174 1.243902 CCGTTAGTGCAACATGGGTT 58.756 50.000 0.00 0.00 41.43 4.11
181 182 3.669344 AACATGGGTTGTGCGCCG 61.669 61.111 4.18 0.00 38.99 6.46
182 183 4.947147 ACATGGGTTGTGCGCCGT 62.947 61.111 4.18 0.00 37.11 5.68
183 184 4.403137 CATGGGTTGTGCGCCGTG 62.403 66.667 4.18 0.00 0.00 4.94
184 185 4.947147 ATGGGTTGTGCGCCGTGT 62.947 61.111 4.18 0.00 0.00 4.49
185 186 3.538785 ATGGGTTGTGCGCCGTGTA 62.539 57.895 4.18 0.00 0.00 2.90
186 187 2.744709 GGGTTGTGCGCCGTGTAT 60.745 61.111 4.18 0.00 0.00 2.29
187 188 2.746803 GGGTTGTGCGCCGTGTATC 61.747 63.158 4.18 0.00 0.00 2.24
188 189 2.030401 GGTTGTGCGCCGTGTATCA 61.030 57.895 4.18 0.00 0.00 2.15
189 190 1.366111 GGTTGTGCGCCGTGTATCAT 61.366 55.000 4.18 0.00 0.00 2.45
190 191 0.446222 GTTGTGCGCCGTGTATCATT 59.554 50.000 4.18 0.00 0.00 2.57
191 192 1.135803 GTTGTGCGCCGTGTATCATTT 60.136 47.619 4.18 0.00 0.00 2.32
192 193 1.160989 TGTGCGCCGTGTATCATTTT 58.839 45.000 4.18 0.00 0.00 1.82
193 194 1.135831 TGTGCGCCGTGTATCATTTTG 60.136 47.619 4.18 0.00 0.00 2.44
194 195 1.135803 GTGCGCCGTGTATCATTTTGT 60.136 47.619 4.18 0.00 0.00 2.83
195 196 2.094575 GTGCGCCGTGTATCATTTTGTA 59.905 45.455 4.18 0.00 0.00 2.41
196 197 2.742589 TGCGCCGTGTATCATTTTGTAA 59.257 40.909 4.18 0.00 0.00 2.41
197 198 3.375610 TGCGCCGTGTATCATTTTGTAAT 59.624 39.130 4.18 0.00 0.00 1.89
198 199 3.966218 GCGCCGTGTATCATTTTGTAATC 59.034 43.478 0.00 0.00 0.00 1.75
199 200 4.260620 GCGCCGTGTATCATTTTGTAATCT 60.261 41.667 0.00 0.00 0.00 2.40
200 201 5.197549 CGCCGTGTATCATTTTGTAATCTG 58.802 41.667 0.00 0.00 0.00 2.90
201 202 5.510671 GCCGTGTATCATTTTGTAATCTGG 58.489 41.667 0.00 0.00 0.00 3.86
202 203 5.295787 GCCGTGTATCATTTTGTAATCTGGA 59.704 40.000 0.00 0.00 0.00 3.86
203 204 6.511767 GCCGTGTATCATTTTGTAATCTGGAG 60.512 42.308 0.00 0.00 0.00 3.86
204 205 6.422223 CGTGTATCATTTTGTAATCTGGAGC 58.578 40.000 0.00 0.00 0.00 4.70
205 206 6.037062 CGTGTATCATTTTGTAATCTGGAGCA 59.963 38.462 0.00 0.00 0.00 4.26
206 207 7.189512 GTGTATCATTTTGTAATCTGGAGCAC 58.810 38.462 0.00 0.00 0.00 4.40
207 208 6.883756 TGTATCATTTTGTAATCTGGAGCACA 59.116 34.615 0.00 0.00 0.00 4.57
208 209 5.627499 TCATTTTGTAATCTGGAGCACAC 57.373 39.130 0.00 0.00 0.00 3.82
209 210 5.316167 TCATTTTGTAATCTGGAGCACACT 58.684 37.500 0.00 0.00 0.00 3.55
210 211 5.181811 TCATTTTGTAATCTGGAGCACACTG 59.818 40.000 0.00 0.00 0.00 3.66
211 212 4.350368 TTTGTAATCTGGAGCACACTGA 57.650 40.909 0.00 0.00 0.00 3.41
212 213 4.558226 TTGTAATCTGGAGCACACTGAT 57.442 40.909 0.00 0.00 0.00 2.90
213 214 5.675684 TTGTAATCTGGAGCACACTGATA 57.324 39.130 0.00 0.00 0.00 2.15
214 215 5.675684 TGTAATCTGGAGCACACTGATAA 57.324 39.130 0.00 0.00 0.00 1.75
215 216 6.239217 TGTAATCTGGAGCACACTGATAAT 57.761 37.500 0.00 0.00 0.00 1.28
216 217 6.653020 TGTAATCTGGAGCACACTGATAATT 58.347 36.000 0.00 0.00 0.00 1.40
217 218 7.112122 TGTAATCTGGAGCACACTGATAATTT 58.888 34.615 0.00 0.00 0.00 1.82
218 219 7.611467 TGTAATCTGGAGCACACTGATAATTTT 59.389 33.333 0.00 0.00 0.00 1.82
219 220 5.885230 TCTGGAGCACACTGATAATTTTG 57.115 39.130 0.00 0.00 0.00 2.44
220 221 4.701651 TCTGGAGCACACTGATAATTTTGG 59.298 41.667 0.00 0.00 0.00 3.28
221 222 3.193267 TGGAGCACACTGATAATTTTGGC 59.807 43.478 0.00 0.00 0.00 4.52
222 223 3.429410 GGAGCACACTGATAATTTTGGCC 60.429 47.826 0.00 0.00 0.00 5.36
223 224 2.497273 AGCACACTGATAATTTTGGCCC 59.503 45.455 0.00 0.00 0.00 5.80
224 225 2.233431 GCACACTGATAATTTTGGCCCA 59.767 45.455 0.00 0.00 0.00 5.36
225 226 3.848726 CACACTGATAATTTTGGCCCAC 58.151 45.455 0.00 0.00 0.00 4.61
226 227 3.257873 CACACTGATAATTTTGGCCCACA 59.742 43.478 0.00 0.00 0.00 4.17
227 228 3.511146 ACACTGATAATTTTGGCCCACAG 59.489 43.478 0.00 0.00 0.00 3.66
228 229 2.497273 ACTGATAATTTTGGCCCACAGC 59.503 45.455 0.00 0.00 42.60 4.40
229 230 2.762327 CTGATAATTTTGGCCCACAGCT 59.238 45.455 0.00 0.00 43.05 4.24
230 231 3.953612 CTGATAATTTTGGCCCACAGCTA 59.046 43.478 0.00 0.00 43.05 3.32
231 232 4.348486 TGATAATTTTGGCCCACAGCTAA 58.652 39.130 0.00 0.00 40.68 3.09
232 233 4.961730 TGATAATTTTGGCCCACAGCTAAT 59.038 37.500 0.00 0.00 42.13 1.73
233 234 6.132658 TGATAATTTTGGCCCACAGCTAATA 58.867 36.000 0.00 0.00 42.13 0.98
234 235 6.782000 TGATAATTTTGGCCCACAGCTAATAT 59.218 34.615 0.00 0.00 42.13 1.28
235 236 4.942761 ATTTTGGCCCACAGCTAATATG 57.057 40.909 0.00 0.00 42.13 1.78
236 237 2.363306 TTGGCCCACAGCTAATATGG 57.637 50.000 0.00 0.00 43.05 2.74
240 241 2.169832 CCCACAGCTAATATGGGTCG 57.830 55.000 13.85 0.00 46.99 4.79
241 242 1.691976 CCCACAGCTAATATGGGTCGA 59.308 52.381 13.85 0.00 46.99 4.20
242 243 2.303022 CCCACAGCTAATATGGGTCGAT 59.697 50.000 13.85 0.00 46.99 3.59
243 244 3.329386 CCACAGCTAATATGGGTCGATG 58.671 50.000 0.00 0.00 0.00 3.84
244 245 3.244215 CCACAGCTAATATGGGTCGATGT 60.244 47.826 0.00 0.00 0.00 3.06
245 246 4.380531 CACAGCTAATATGGGTCGATGTT 58.619 43.478 0.00 0.00 0.00 2.71
246 247 5.510690 CCACAGCTAATATGGGTCGATGTTA 60.511 44.000 0.00 0.00 0.00 2.41
247 248 5.405571 CACAGCTAATATGGGTCGATGTTAC 59.594 44.000 0.00 0.00 0.00 2.50
248 249 4.929808 CAGCTAATATGGGTCGATGTTACC 59.070 45.833 0.00 0.00 36.19 2.85
249 250 4.591498 AGCTAATATGGGTCGATGTTACCA 59.409 41.667 0.00 0.00 38.87 3.25
250 251 4.929808 GCTAATATGGGTCGATGTTACCAG 59.070 45.833 0.00 0.00 38.87 4.00
251 252 5.510861 GCTAATATGGGTCGATGTTACCAGT 60.511 44.000 0.00 0.00 38.87 4.00
252 253 2.691409 ATGGGTCGATGTTACCAGTG 57.309 50.000 0.00 0.00 38.87 3.66
253 254 0.611200 TGGGTCGATGTTACCAGTGG 59.389 55.000 7.91 7.91 38.87 4.00
254 255 0.743345 GGGTCGATGTTACCAGTGGC 60.743 60.000 9.78 0.00 38.87 5.01
255 256 0.743345 GGTCGATGTTACCAGTGGCC 60.743 60.000 9.78 0.00 36.96 5.36
256 257 1.082117 GTCGATGTTACCAGTGGCCG 61.082 60.000 9.78 3.83 0.00 6.13
257 258 2.461110 CGATGTTACCAGTGGCCGC 61.461 63.158 9.78 8.71 0.00 6.53
258 259 2.435938 ATGTTACCAGTGGCCGCG 60.436 61.111 9.78 0.00 0.00 6.46
261 262 4.627801 TTACCAGTGGCCGCGCAA 62.628 61.111 9.78 0.63 0.00 4.85
262 263 4.627801 TACCAGTGGCCGCGCAAA 62.628 61.111 9.78 0.00 0.00 3.68
265 266 4.688419 CAGTGGCCGCGCAAACTG 62.688 66.667 11.42 15.64 38.02 3.16
275 276 2.721231 GCAAACTGGCGCTTGTCA 59.279 55.556 7.64 0.00 0.00 3.58
276 277 1.065600 GCAAACTGGCGCTTGTCAA 59.934 52.632 7.64 0.00 0.00 3.18
277 278 0.936297 GCAAACTGGCGCTTGTCAAG 60.936 55.000 7.64 8.31 0.00 3.02
278 279 0.381801 CAAACTGGCGCTTGTCAAGT 59.618 50.000 14.03 0.00 0.00 3.16
279 280 1.601903 CAAACTGGCGCTTGTCAAGTA 59.398 47.619 14.03 0.00 0.00 2.24
280 281 1.961793 AACTGGCGCTTGTCAAGTAA 58.038 45.000 14.03 0.00 0.00 2.24
281 282 1.512926 ACTGGCGCTTGTCAAGTAAG 58.487 50.000 14.03 8.83 0.00 2.34
282 283 1.202651 ACTGGCGCTTGTCAAGTAAGT 60.203 47.619 14.03 9.38 0.00 2.24
283 284 1.195448 CTGGCGCTTGTCAAGTAAGTG 59.805 52.381 14.03 0.00 38.38 3.16
284 285 0.517316 GGCGCTTGTCAAGTAAGTGG 59.483 55.000 14.03 0.00 36.44 4.00
285 286 0.110192 GCGCTTGTCAAGTAAGTGGC 60.110 55.000 14.03 5.14 36.44 5.01
286 287 0.517316 CGCTTGTCAAGTAAGTGGCC 59.483 55.000 14.03 0.00 33.25 5.36
287 288 1.604604 GCTTGTCAAGTAAGTGGCCA 58.395 50.000 14.03 0.00 0.00 5.36
288 289 1.537202 GCTTGTCAAGTAAGTGGCCAG 59.463 52.381 5.11 0.00 0.00 4.85
289 290 2.810400 GCTTGTCAAGTAAGTGGCCAGA 60.810 50.000 5.11 0.00 0.00 3.86
290 291 3.679389 CTTGTCAAGTAAGTGGCCAGAT 58.321 45.455 5.11 0.00 0.00 2.90
291 292 3.788227 TGTCAAGTAAGTGGCCAGATT 57.212 42.857 5.11 7.08 0.00 2.40
292 293 4.901197 TGTCAAGTAAGTGGCCAGATTA 57.099 40.909 5.11 5.88 0.00 1.75
293 294 4.575885 TGTCAAGTAAGTGGCCAGATTAC 58.424 43.478 24.16 24.16 0.00 1.89
294 295 3.939592 GTCAAGTAAGTGGCCAGATTACC 59.060 47.826 26.35 14.16 31.21 2.85
295 296 3.585289 TCAAGTAAGTGGCCAGATTACCA 59.415 43.478 26.35 14.60 31.21 3.25
296 297 3.914426 AGTAAGTGGCCAGATTACCAG 57.086 47.619 26.35 0.00 36.38 4.00
297 298 3.182152 AGTAAGTGGCCAGATTACCAGT 58.818 45.455 26.35 13.16 41.48 4.00
298 299 2.496899 AAGTGGCCAGATTACCAGTG 57.503 50.000 5.11 0.00 39.59 3.66
299 300 1.656587 AGTGGCCAGATTACCAGTGA 58.343 50.000 5.11 0.00 38.21 3.41
300 301 1.279271 AGTGGCCAGATTACCAGTGAC 59.721 52.381 5.11 0.00 38.21 3.67
301 302 1.279271 GTGGCCAGATTACCAGTGACT 59.721 52.381 5.11 0.00 36.38 3.41
302 303 1.985159 TGGCCAGATTACCAGTGACTT 59.015 47.619 0.00 0.00 0.00 3.01
303 304 2.290260 TGGCCAGATTACCAGTGACTTG 60.290 50.000 0.00 0.00 0.00 3.16
304 305 2.290323 GGCCAGATTACCAGTGACTTGT 60.290 50.000 0.00 0.00 0.00 3.16
305 306 3.055385 GGCCAGATTACCAGTGACTTGTA 60.055 47.826 0.00 0.00 0.00 2.41
306 307 4.564821 GGCCAGATTACCAGTGACTTGTAA 60.565 45.833 11.07 11.07 0.00 2.41
307 308 4.392138 GCCAGATTACCAGTGACTTGTAAC 59.608 45.833 10.92 6.33 27.22 2.50
308 309 4.625742 CCAGATTACCAGTGACTTGTAACG 59.374 45.833 10.92 4.15 27.22 3.18
309 310 4.625742 CAGATTACCAGTGACTTGTAACGG 59.374 45.833 10.92 0.00 27.22 4.44
310 311 4.282703 AGATTACCAGTGACTTGTAACGGT 59.717 41.667 10.92 3.60 27.22 4.83
311 312 2.521105 ACCAGTGACTTGTAACGGTC 57.479 50.000 0.00 0.00 0.00 4.79
312 313 1.069668 ACCAGTGACTTGTAACGGTCC 59.930 52.381 0.00 0.00 0.00 4.46
313 314 1.069513 CCAGTGACTTGTAACGGTCCA 59.930 52.381 0.00 0.00 0.00 4.02
314 315 2.132762 CAGTGACTTGTAACGGTCCAC 58.867 52.381 0.00 0.00 0.00 4.02
315 316 1.758280 AGTGACTTGTAACGGTCCACA 59.242 47.619 0.00 0.00 0.00 4.17
316 317 2.367567 AGTGACTTGTAACGGTCCACAT 59.632 45.455 0.00 0.00 0.00 3.21
317 318 3.575256 AGTGACTTGTAACGGTCCACATA 59.425 43.478 0.00 0.00 0.00 2.29
318 319 4.222145 AGTGACTTGTAACGGTCCACATAT 59.778 41.667 0.00 0.00 0.00 1.78
319 320 5.419788 AGTGACTTGTAACGGTCCACATATA 59.580 40.000 0.00 0.00 0.00 0.86
320 321 6.071221 AGTGACTTGTAACGGTCCACATATAA 60.071 38.462 0.00 0.00 0.00 0.98
321 322 6.759827 GTGACTTGTAACGGTCCACATATAAT 59.240 38.462 0.00 0.00 0.00 1.28
322 323 6.982141 TGACTTGTAACGGTCCACATATAATC 59.018 38.462 0.00 0.00 0.00 1.75
323 324 6.880484 ACTTGTAACGGTCCACATATAATCA 58.120 36.000 0.00 0.00 0.00 2.57
324 325 7.506114 ACTTGTAACGGTCCACATATAATCAT 58.494 34.615 0.00 0.00 0.00 2.45
325 326 7.990886 ACTTGTAACGGTCCACATATAATCATT 59.009 33.333 0.00 0.00 0.00 2.57
326 327 8.740123 TTGTAACGGTCCACATATAATCATTT 57.260 30.769 0.00 0.00 0.00 2.32
327 328 8.740123 TGTAACGGTCCACATATAATCATTTT 57.260 30.769 0.00 0.00 0.00 1.82
328 329 8.832521 TGTAACGGTCCACATATAATCATTTTC 58.167 33.333 0.00 0.00 0.00 2.29
329 330 6.877611 ACGGTCCACATATAATCATTTTCC 57.122 37.500 0.00 0.00 0.00 3.13
330 331 6.361433 ACGGTCCACATATAATCATTTTCCA 58.639 36.000 0.00 0.00 0.00 3.53
331 332 6.486657 ACGGTCCACATATAATCATTTTCCAG 59.513 38.462 0.00 0.00 0.00 3.86
332 333 6.486657 CGGTCCACATATAATCATTTTCCAGT 59.513 38.462 0.00 0.00 0.00 4.00
333 334 7.659799 CGGTCCACATATAATCATTTTCCAGTA 59.340 37.037 0.00 0.00 0.00 2.74
334 335 9.003658 GGTCCACATATAATCATTTTCCAGTAG 57.996 37.037 0.00 0.00 0.00 2.57
335 336 9.561069 GTCCACATATAATCATTTTCCAGTAGT 57.439 33.333 0.00 0.00 0.00 2.73
336 337 9.559732 TCCACATATAATCATTTTCCAGTAGTG 57.440 33.333 0.00 0.00 0.00 2.74
337 338 8.786898 CCACATATAATCATTTTCCAGTAGTGG 58.213 37.037 10.66 10.66 46.63 4.00
338 339 8.292448 CACATATAATCATTTTCCAGTAGTGGC 58.708 37.037 12.14 0.00 44.60 5.01
339 340 7.998383 ACATATAATCATTTTCCAGTAGTGGCA 59.002 33.333 12.14 0.00 44.60 4.92
340 341 6.949352 ATAATCATTTTCCAGTAGTGGCAG 57.051 37.500 12.14 0.09 44.60 4.85
341 342 2.436417 TCATTTTCCAGTAGTGGCAGC 58.564 47.619 12.14 0.00 44.60 5.25
342 343 1.131126 CATTTTCCAGTAGTGGCAGCG 59.869 52.381 12.14 0.00 44.60 5.18
343 344 0.605319 TTTTCCAGTAGTGGCAGCGG 60.605 55.000 12.14 0.00 44.60 5.52
344 345 1.476845 TTTCCAGTAGTGGCAGCGGA 61.477 55.000 12.14 0.00 44.60 5.54
345 346 2.125512 CCAGTAGTGGCAGCGGAC 60.126 66.667 2.97 0.00 36.89 4.79
346 347 2.656646 CAGTAGTGGCAGCGGACA 59.343 61.111 0.00 0.00 0.00 4.02
347 348 1.219124 CAGTAGTGGCAGCGGACAT 59.781 57.895 0.00 0.00 32.08 3.06
348 349 0.807667 CAGTAGTGGCAGCGGACATC 60.808 60.000 0.00 0.00 32.08 3.06
349 350 0.972983 AGTAGTGGCAGCGGACATCT 60.973 55.000 0.00 0.00 32.08 2.90
350 351 0.807667 GTAGTGGCAGCGGACATCTG 60.808 60.000 0.00 0.00 32.08 2.90
360 361 1.167851 CGGACATCTGCAACAATGGT 58.832 50.000 7.93 0.00 0.00 3.55
361 362 1.135603 CGGACATCTGCAACAATGGTG 60.136 52.381 0.00 0.00 0.00 4.17
362 363 1.403249 GGACATCTGCAACAATGGTGC 60.403 52.381 17.53 17.53 0.00 5.01
363 364 0.241749 ACATCTGCAACAATGGTGCG 59.758 50.000 19.06 13.16 0.00 5.34
364 365 0.522626 CATCTGCAACAATGGTGCGA 59.477 50.000 19.06 17.87 0.00 5.10
365 366 0.806868 ATCTGCAACAATGGTGCGAG 59.193 50.000 19.06 16.02 0.00 5.03
366 367 0.250252 TCTGCAACAATGGTGCGAGA 60.250 50.000 19.06 17.93 0.00 4.04
367 368 0.806868 CTGCAACAATGGTGCGAGAT 59.193 50.000 19.06 0.00 0.00 2.75
368 369 0.522626 TGCAACAATGGTGCGAGATG 59.477 50.000 19.06 0.00 0.00 2.90
369 370 0.179156 GCAACAATGGTGCGAGATGG 60.179 55.000 7.78 0.00 0.00 3.51
370 371 0.452987 CAACAATGGTGCGAGATGGG 59.547 55.000 0.00 0.00 0.00 4.00
371 372 0.680921 AACAATGGTGCGAGATGGGG 60.681 55.000 0.00 0.00 0.00 4.96
372 373 1.224315 CAATGGTGCGAGATGGGGA 59.776 57.895 0.00 0.00 0.00 4.81
373 374 0.179009 CAATGGTGCGAGATGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
374 375 0.179009 AATGGTGCGAGATGGGGATG 60.179 55.000 0.00 0.00 0.00 3.51
375 376 1.056125 ATGGTGCGAGATGGGGATGA 61.056 55.000 0.00 0.00 0.00 2.92
376 377 1.070445 GGTGCGAGATGGGGATGAG 59.930 63.158 0.00 0.00 0.00 2.90
377 378 1.596477 GTGCGAGATGGGGATGAGC 60.596 63.158 0.00 0.00 0.00 4.26
378 379 2.065789 TGCGAGATGGGGATGAGCA 61.066 57.895 0.00 0.00 0.00 4.26
379 380 1.374190 GCGAGATGGGGATGAGCAT 59.626 57.895 0.00 0.00 0.00 3.79
380 381 0.673022 GCGAGATGGGGATGAGCATC 60.673 60.000 1.86 1.86 37.11 3.91
381 382 0.975135 CGAGATGGGGATGAGCATCT 59.025 55.000 10.04 0.00 37.92 2.90
382 383 2.174360 CGAGATGGGGATGAGCATCTA 58.826 52.381 10.04 0.00 37.92 1.98
383 384 2.166050 CGAGATGGGGATGAGCATCTAG 59.834 54.545 10.04 0.00 37.92 2.43
384 385 2.500910 GAGATGGGGATGAGCATCTAGG 59.499 54.545 10.04 0.00 37.92 3.02
385 386 0.990374 ATGGGGATGAGCATCTAGGC 59.010 55.000 10.04 0.00 37.92 3.93
386 387 1.294780 GGGGATGAGCATCTAGGCG 59.705 63.158 10.04 0.00 39.27 5.52
387 388 1.294780 GGGATGAGCATCTAGGCGG 59.705 63.158 10.04 0.00 39.27 6.13
388 389 1.375268 GGATGAGCATCTAGGCGGC 60.375 63.158 0.00 0.00 39.27 6.53
389 390 1.368950 GATGAGCATCTAGGCGGCA 59.631 57.895 13.08 0.00 39.27 5.69
390 391 0.250038 GATGAGCATCTAGGCGGCAA 60.250 55.000 13.08 0.00 39.27 4.52
391 392 0.181114 ATGAGCATCTAGGCGGCAAA 59.819 50.000 13.08 0.00 39.27 3.68
392 393 0.181114 TGAGCATCTAGGCGGCAAAT 59.819 50.000 13.08 0.00 39.27 2.32
393 394 0.871057 GAGCATCTAGGCGGCAAATC 59.129 55.000 13.08 0.00 39.27 2.17
394 395 0.471617 AGCATCTAGGCGGCAAATCT 59.528 50.000 13.08 0.00 39.27 2.40
395 396 0.871057 GCATCTAGGCGGCAAATCTC 59.129 55.000 13.08 0.00 0.00 2.75
396 397 1.811558 GCATCTAGGCGGCAAATCTCA 60.812 52.381 13.08 0.00 0.00 3.27
397 398 1.869767 CATCTAGGCGGCAAATCTCAC 59.130 52.381 13.08 0.00 0.00 3.51
398 399 0.179111 TCTAGGCGGCAAATCTCACG 60.179 55.000 13.08 0.00 0.00 4.35
399 400 0.460284 CTAGGCGGCAAATCTCACGT 60.460 55.000 13.08 0.00 0.00 4.49
400 401 0.739462 TAGGCGGCAAATCTCACGTG 60.739 55.000 13.08 9.94 0.00 4.49
401 402 2.032634 GGCGGCAAATCTCACGTGA 61.033 57.895 18.88 18.88 0.00 4.35
402 403 1.132640 GCGGCAAATCTCACGTGAC 59.867 57.895 15.76 3.34 0.00 3.67
403 404 1.565156 GCGGCAAATCTCACGTGACA 61.565 55.000 15.76 4.70 0.00 3.58
404 405 0.865111 CGGCAAATCTCACGTGACAA 59.135 50.000 15.76 6.23 0.00 3.18
405 406 1.136252 CGGCAAATCTCACGTGACAAG 60.136 52.381 15.76 5.45 0.00 3.16
406 407 1.197721 GGCAAATCTCACGTGACAAGG 59.802 52.381 15.76 5.04 0.00 3.61
407 408 1.400242 GCAAATCTCACGTGACAAGGC 60.400 52.381 15.76 11.09 0.00 4.35
408 409 2.146342 CAAATCTCACGTGACAAGGCT 58.854 47.619 15.76 0.00 0.00 4.58
409 410 3.325870 CAAATCTCACGTGACAAGGCTA 58.674 45.455 15.76 0.00 0.00 3.93
410 411 2.949451 ATCTCACGTGACAAGGCTAG 57.051 50.000 15.76 2.17 0.00 3.42
411 412 1.905637 TCTCACGTGACAAGGCTAGA 58.094 50.000 15.76 4.87 0.00 2.43
412 413 2.447443 TCTCACGTGACAAGGCTAGAT 58.553 47.619 15.76 0.00 0.00 1.98
413 414 2.164422 TCTCACGTGACAAGGCTAGATG 59.836 50.000 15.76 0.00 0.00 2.90
414 415 1.893137 TCACGTGACAAGGCTAGATGT 59.107 47.619 15.76 0.00 0.00 3.06
415 416 1.995484 CACGTGACAAGGCTAGATGTG 59.005 52.381 10.90 0.00 0.00 3.21
416 417 1.002366 CGTGACAAGGCTAGATGTGC 58.998 55.000 0.00 0.00 0.00 4.57
417 418 1.672737 CGTGACAAGGCTAGATGTGCA 60.673 52.381 0.00 0.00 0.00 4.57
418 419 2.636830 GTGACAAGGCTAGATGTGCAT 58.363 47.619 0.00 0.00 0.00 3.96
419 420 2.611292 GTGACAAGGCTAGATGTGCATC 59.389 50.000 4.12 4.12 38.09 3.91
420 421 1.863454 GACAAGGCTAGATGTGCATCG 59.137 52.381 6.54 0.00 42.48 3.84
421 422 1.224075 CAAGGCTAGATGTGCATCGG 58.776 55.000 6.54 5.49 42.48 4.18
422 423 0.533755 AAGGCTAGATGTGCATCGGC 60.534 55.000 17.65 17.65 42.48 5.54
423 424 1.070445 GGCTAGATGTGCATCGGCT 59.930 57.895 21.69 5.75 42.48 5.52
424 425 0.318441 GGCTAGATGTGCATCGGCTA 59.682 55.000 21.69 6.40 42.48 3.93
425 426 1.423395 GCTAGATGTGCATCGGCTAC 58.577 55.000 18.20 3.45 42.48 3.58
426 427 1.691127 CTAGATGTGCATCGGCTACG 58.309 55.000 6.54 0.00 42.48 3.51
427 428 0.318699 TAGATGTGCATCGGCTACGC 60.319 55.000 6.54 0.00 42.48 4.42
428 429 1.592669 GATGTGCATCGGCTACGCT 60.593 57.895 0.00 0.00 41.91 5.07
429 430 0.318699 GATGTGCATCGGCTACGCTA 60.319 55.000 0.00 0.00 41.91 4.26
430 431 0.319040 ATGTGCATCGGCTACGCTAG 60.319 55.000 0.00 0.00 41.91 3.42
431 432 1.661821 GTGCATCGGCTACGCTAGG 60.662 63.158 0.00 0.00 41.91 3.02
432 433 2.125326 TGCATCGGCTACGCTAGGT 61.125 57.895 0.00 0.00 41.91 3.08
433 434 0.820482 TGCATCGGCTACGCTAGGTA 60.820 55.000 0.00 0.00 41.91 3.08
444 445 2.501492 GCTAGGTAGCGGTTGGAGA 58.499 57.895 0.00 0.00 39.82 3.71
445 446 1.041437 GCTAGGTAGCGGTTGGAGAT 58.959 55.000 0.00 0.00 39.82 2.75
446 447 1.269831 GCTAGGTAGCGGTTGGAGATG 60.270 57.143 0.00 0.00 39.82 2.90
447 448 1.341531 CTAGGTAGCGGTTGGAGATGG 59.658 57.143 0.00 0.00 0.00 3.51
448 449 0.325296 AGGTAGCGGTTGGAGATGGA 60.325 55.000 0.00 0.00 0.00 3.41
449 450 0.539986 GGTAGCGGTTGGAGATGGAA 59.460 55.000 0.00 0.00 0.00 3.53
450 451 1.065709 GGTAGCGGTTGGAGATGGAAA 60.066 52.381 0.00 0.00 0.00 3.13
451 452 2.280628 GTAGCGGTTGGAGATGGAAAG 58.719 52.381 0.00 0.00 0.00 2.62
452 453 0.984230 AGCGGTTGGAGATGGAAAGA 59.016 50.000 0.00 0.00 0.00 2.52
453 454 1.561542 AGCGGTTGGAGATGGAAAGAT 59.438 47.619 0.00 0.00 0.00 2.40
454 455 1.943340 GCGGTTGGAGATGGAAAGATC 59.057 52.381 0.00 0.00 0.00 2.75
455 456 2.565841 CGGTTGGAGATGGAAAGATCC 58.434 52.381 0.00 0.00 46.76 3.36
456 457 2.746472 CGGTTGGAGATGGAAAGATCCC 60.746 54.545 0.00 0.00 45.95 3.85
457 458 2.423517 GGTTGGAGATGGAAAGATCCCC 60.424 54.545 0.00 0.00 45.95 4.81
458 459 1.522900 TGGAGATGGAAAGATCCCCC 58.477 55.000 0.00 0.00 45.95 5.40
459 460 1.274943 TGGAGATGGAAAGATCCCCCA 60.275 52.381 1.45 1.45 45.95 4.96
460 461 1.423161 GGAGATGGAAAGATCCCCCAG 59.577 57.143 4.89 0.00 45.95 4.45
461 462 0.849417 AGATGGAAAGATCCCCCAGC 59.151 55.000 5.94 5.94 45.95 4.85
462 463 0.178978 GATGGAAAGATCCCCCAGCC 60.179 60.000 3.34 0.00 45.95 4.85
463 464 0.628668 ATGGAAAGATCCCCCAGCCT 60.629 55.000 4.89 0.00 45.95 4.58
464 465 0.045623 TGGAAAGATCCCCCAGCCTA 59.954 55.000 0.00 0.00 45.95 3.93
465 466 1.346465 TGGAAAGATCCCCCAGCCTAT 60.346 52.381 0.00 0.00 45.95 2.57
466 467 1.783365 GGAAAGATCCCCCAGCCTATT 59.217 52.381 0.00 0.00 40.10 1.73
467 468 2.177888 GGAAAGATCCCCCAGCCTATTT 59.822 50.000 0.00 0.00 40.10 1.40
468 469 3.374208 GGAAAGATCCCCCAGCCTATTTT 60.374 47.826 0.00 0.00 40.10 1.82
469 470 4.290093 GAAAGATCCCCCAGCCTATTTTT 58.710 43.478 0.00 0.00 0.00 1.94
498 499 2.252976 TTTTCAGCATGCAAAACCCC 57.747 45.000 21.98 0.00 34.76 4.95
499 500 0.396060 TTTCAGCATGCAAAACCCCC 59.604 50.000 21.98 0.00 34.76 5.40
626 627 0.536006 GTGCTGTCAAAGTCCTGGCT 60.536 55.000 0.00 0.00 0.00 4.75
637 638 0.890996 GTCCTGGCTGTTGGTCCTTG 60.891 60.000 0.00 0.00 0.00 3.61
772 774 1.589803 GTGCACGGTGAAAACCTAGT 58.410 50.000 13.29 0.00 0.00 2.57
807 809 2.409870 CCCTGAACAGCCAATCCGC 61.410 63.158 0.00 0.00 0.00 5.54
836 838 1.228920 TCTTCCCCTGCCCTCCTCTA 61.229 60.000 0.00 0.00 0.00 2.43
890 892 1.074850 CCTCCTCCTCCCCTTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
893 895 2.652113 CCTCCTCCCCTTCTCCCCT 61.652 68.421 0.00 0.00 0.00 4.79
894 896 1.383803 CTCCTCCCCTTCTCCCCTG 60.384 68.421 0.00 0.00 0.00 4.45
895 897 3.093172 CCTCCCCTTCTCCCCTGC 61.093 72.222 0.00 0.00 0.00 4.85
896 898 2.041928 CTCCCCTTCTCCCCTGCT 59.958 66.667 0.00 0.00 0.00 4.24
897 899 1.617839 CTCCCCTTCTCCCCTGCTT 60.618 63.158 0.00 0.00 0.00 3.91
898 900 1.151587 TCCCCTTCTCCCCTGCTTT 60.152 57.895 0.00 0.00 0.00 3.51
901 903 1.500783 CCCTTCTCCCCTGCTTTCCA 61.501 60.000 0.00 0.00 0.00 3.53
902 904 0.322906 CCTTCTCCCCTGCTTTCCAC 60.323 60.000 0.00 0.00 0.00 4.02
903 905 0.322906 CTTCTCCCCTGCTTTCCACC 60.323 60.000 0.00 0.00 0.00 4.61
904 906 2.045926 CTCCCCTGCTTTCCACCG 60.046 66.667 0.00 0.00 0.00 4.94
905 907 4.344865 TCCCCTGCTTTCCACCGC 62.345 66.667 0.00 0.00 0.00 5.68
963 965 2.909662 CTCCCCTTCACTTTTCTCTCCT 59.090 50.000 0.00 0.00 0.00 3.69
1213 1222 1.006400 CATTCCTGCCTCCCCTCTTTT 59.994 52.381 0.00 0.00 0.00 2.27
1214 1223 0.405585 TTCCTGCCTCCCCTCTTTTG 59.594 55.000 0.00 0.00 0.00 2.44
1215 1224 0.475632 TCCTGCCTCCCCTCTTTTGA 60.476 55.000 0.00 0.00 0.00 2.69
1216 1225 0.627986 CCTGCCTCCCCTCTTTTGAT 59.372 55.000 0.00 0.00 0.00 2.57
1217 1226 1.006400 CCTGCCTCCCCTCTTTTGATT 59.994 52.381 0.00 0.00 0.00 2.57
1218 1227 2.558350 CCTGCCTCCCCTCTTTTGATTT 60.558 50.000 0.00 0.00 0.00 2.17
1219 1228 3.168292 CTGCCTCCCCTCTTTTGATTTT 58.832 45.455 0.00 0.00 0.00 1.82
1252 1261 1.429930 TGTACCTGCTTGTCCCTCAA 58.570 50.000 0.00 0.00 34.61 3.02
1415 1424 2.241176 TCTCCTTCCTGTTGTTGTTGGT 59.759 45.455 0.00 0.00 0.00 3.67
1515 1524 2.084610 TGGCTTGATCTCTTGTGTCG 57.915 50.000 0.00 0.00 0.00 4.35
1797 1806 8.785329 ATGATCTCCTACTTTCTTTTCTTGAC 57.215 34.615 0.00 0.00 0.00 3.18
1818 1827 6.754193 TGACTTGTGTTTTGTTCTTCCTTTT 58.246 32.000 0.00 0.00 0.00 2.27
1898 1907 2.225382 TCCCATCTAGTCGTTGGTGA 57.775 50.000 0.00 0.00 31.69 4.02
1934 4509 0.755327 GGCCAGTGGTGTTCCTTTGT 60.755 55.000 11.74 0.00 34.23 2.83
1966 4541 3.327172 AGTGCGCTATCTCCTAGGTAGTA 59.673 47.826 9.73 0.00 0.00 1.82
2218 4797 3.129287 ACTTCATTGGCTTATTCCTTGCG 59.871 43.478 0.00 0.00 0.00 4.85
2220 4799 3.088532 TCATTGGCTTATTCCTTGCGTT 58.911 40.909 0.00 0.00 0.00 4.84
2337 4917 2.620585 TGATGAGATCGATCGTTGAGCT 59.379 45.455 19.33 3.59 34.21 4.09
2356 4936 3.522750 AGCTTGAGGAGGTCTGAATTCAT 59.477 43.478 8.96 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.341899 GCGTTCATGTTTTAGTTCTATTTTCAT 57.658 29.630 0.00 0.00 0.00 2.57
8 9 8.346300 TGCGTTCATGTTTTAGTTCTATTTTCA 58.654 29.630 0.00 0.00 0.00 2.69
9 10 8.722342 TGCGTTCATGTTTTAGTTCTATTTTC 57.278 30.769 0.00 0.00 0.00 2.29
10 11 9.522804 TTTGCGTTCATGTTTTAGTTCTATTTT 57.477 25.926 0.00 0.00 0.00 1.82
11 12 9.522804 TTTTGCGTTCATGTTTTAGTTCTATTT 57.477 25.926 0.00 0.00 0.00 1.40
12 13 9.522804 TTTTTGCGTTCATGTTTTAGTTCTATT 57.477 25.926 0.00 0.00 0.00 1.73
41 42 9.478768 TTTGTTTTTACTTTTCCGTCTCTTTTT 57.521 25.926 0.00 0.00 0.00 1.94
42 43 9.478768 TTTTGTTTTTACTTTTCCGTCTCTTTT 57.521 25.926 0.00 0.00 0.00 2.27
43 44 9.478768 TTTTTGTTTTTACTTTTCCGTCTCTTT 57.521 25.926 0.00 0.00 0.00 2.52
44 45 9.135843 CTTTTTGTTTTTACTTTTCCGTCTCTT 57.864 29.630 0.00 0.00 0.00 2.85
45 46 8.517056 TCTTTTTGTTTTTACTTTTCCGTCTCT 58.483 29.630 0.00 0.00 0.00 3.10
46 47 8.677871 TCTTTTTGTTTTTACTTTTCCGTCTC 57.322 30.769 0.00 0.00 0.00 3.36
47 48 8.517056 TCTCTTTTTGTTTTTACTTTTCCGTCT 58.483 29.630 0.00 0.00 0.00 4.18
48 49 8.677871 TCTCTTTTTGTTTTTACTTTTCCGTC 57.322 30.769 0.00 0.00 0.00 4.79
49 50 9.478768 TTTCTCTTTTTGTTTTTACTTTTCCGT 57.521 25.926 0.00 0.00 0.00 4.69
50 51 9.952341 CTTTCTCTTTTTGTTTTTACTTTTCCG 57.048 29.630 0.00 0.00 0.00 4.30
57 58 9.302345 CCTTCCTCTTTCTCTTTTTGTTTTTAC 57.698 33.333 0.00 0.00 0.00 2.01
58 59 8.474831 CCCTTCCTCTTTCTCTTTTTGTTTTTA 58.525 33.333 0.00 0.00 0.00 1.52
59 60 7.180229 TCCCTTCCTCTTTCTCTTTTTGTTTTT 59.820 33.333 0.00 0.00 0.00 1.94
60 61 6.667848 TCCCTTCCTCTTTCTCTTTTTGTTTT 59.332 34.615 0.00 0.00 0.00 2.43
61 62 6.194967 TCCCTTCCTCTTTCTCTTTTTGTTT 58.805 36.000 0.00 0.00 0.00 2.83
62 63 5.766590 TCCCTTCCTCTTTCTCTTTTTGTT 58.233 37.500 0.00 0.00 0.00 2.83
63 64 5.388599 TCCCTTCCTCTTTCTCTTTTTGT 57.611 39.130 0.00 0.00 0.00 2.83
64 65 6.715347 TTTCCCTTCCTCTTTCTCTTTTTG 57.285 37.500 0.00 0.00 0.00 2.44
65 66 7.733773 TTTTTCCCTTCCTCTTTCTCTTTTT 57.266 32.000 0.00 0.00 0.00 1.94
86 87 9.320352 AGTTTTTCTATTTGGTAATGCGTTTTT 57.680 25.926 0.00 0.00 0.00 1.94
87 88 8.880878 AGTTTTTCTATTTGGTAATGCGTTTT 57.119 26.923 0.00 0.00 0.00 2.43
88 89 8.760569 CAAGTTTTTCTATTTGGTAATGCGTTT 58.239 29.630 0.00 0.00 0.00 3.60
89 90 7.923878 ACAAGTTTTTCTATTTGGTAATGCGTT 59.076 29.630 0.00 0.00 0.00 4.84
90 91 7.381139 CACAAGTTTTTCTATTTGGTAATGCGT 59.619 33.333 0.00 0.00 0.00 5.24
91 92 7.619161 GCACAAGTTTTTCTATTTGGTAATGCG 60.619 37.037 0.00 0.00 0.00 4.73
92 93 7.170658 TGCACAAGTTTTTCTATTTGGTAATGC 59.829 33.333 0.00 0.00 0.00 3.56
93 94 8.586570 TGCACAAGTTTTTCTATTTGGTAATG 57.413 30.769 0.00 0.00 0.00 1.90
94 95 9.606631 TTTGCACAAGTTTTTCTATTTGGTAAT 57.393 25.926 0.00 0.00 0.00 1.89
95 96 9.436957 TTTTGCACAAGTTTTTCTATTTGGTAA 57.563 25.926 0.00 0.00 0.00 2.85
96 97 9.436957 TTTTTGCACAAGTTTTTCTATTTGGTA 57.563 25.926 0.00 0.00 0.00 3.25
97 98 7.913674 TTTTGCACAAGTTTTTCTATTTGGT 57.086 28.000 0.00 0.00 0.00 3.67
124 125 1.138069 CCGGGTTTTCTGCAGGTTTTT 59.862 47.619 15.13 0.00 0.00 1.94
125 126 0.750249 CCGGGTTTTCTGCAGGTTTT 59.250 50.000 15.13 0.00 0.00 2.43
126 127 1.744320 GCCGGGTTTTCTGCAGGTTT 61.744 55.000 15.13 0.00 0.00 3.27
127 128 2.200337 GCCGGGTTTTCTGCAGGTT 61.200 57.895 15.13 0.00 0.00 3.50
128 129 2.597510 GCCGGGTTTTCTGCAGGT 60.598 61.111 15.13 0.00 0.00 4.00
129 130 3.373565 GGCCGGGTTTTCTGCAGG 61.374 66.667 15.13 0.00 0.00 4.85
130 131 3.373565 GGGCCGGGTTTTCTGCAG 61.374 66.667 7.63 7.63 0.00 4.41
131 132 4.211330 TGGGCCGGGTTTTCTGCA 62.211 61.111 2.18 0.00 0.00 4.41
132 133 3.373565 CTGGGCCGGGTTTTCTGC 61.374 66.667 3.77 0.00 0.00 4.26
133 134 0.825840 TTTCTGGGCCGGGTTTTCTG 60.826 55.000 13.58 0.00 0.00 3.02
134 135 0.105913 TTTTCTGGGCCGGGTTTTCT 60.106 50.000 13.58 0.00 0.00 2.52
135 136 0.032952 GTTTTCTGGGCCGGGTTTTC 59.967 55.000 13.58 0.00 0.00 2.29
136 137 1.404479 GGTTTTCTGGGCCGGGTTTT 61.404 55.000 13.58 0.00 0.00 2.43
137 138 1.835267 GGTTTTCTGGGCCGGGTTT 60.835 57.895 13.58 0.00 0.00 3.27
138 139 2.203582 GGTTTTCTGGGCCGGGTT 60.204 61.111 13.58 0.00 0.00 4.11
139 140 4.653888 CGGTTTTCTGGGCCGGGT 62.654 66.667 13.58 0.00 41.60 5.28
143 144 0.879090 CACTAACGGTTTTCTGGGCC 59.121 55.000 0.00 0.00 0.00 5.80
144 145 0.240145 GCACTAACGGTTTTCTGGGC 59.760 55.000 0.00 0.00 0.00 5.36
145 146 1.600023 TGCACTAACGGTTTTCTGGG 58.400 50.000 0.00 0.00 0.00 4.45
146 147 2.356382 TGTTGCACTAACGGTTTTCTGG 59.644 45.455 0.00 0.00 42.34 3.86
147 148 3.684103 TGTTGCACTAACGGTTTTCTG 57.316 42.857 0.00 0.00 42.34 3.02
148 149 3.004315 CCATGTTGCACTAACGGTTTTCT 59.996 43.478 0.00 0.00 42.34 2.52
149 150 3.305110 CCATGTTGCACTAACGGTTTTC 58.695 45.455 0.00 0.00 42.34 2.29
150 151 2.035321 CCCATGTTGCACTAACGGTTTT 59.965 45.455 0.00 0.00 42.34 2.43
151 152 1.611491 CCCATGTTGCACTAACGGTTT 59.389 47.619 0.00 0.00 42.34 3.27
152 153 1.243902 CCCATGTTGCACTAACGGTT 58.756 50.000 0.00 0.00 42.34 4.44
153 154 0.109723 ACCCATGTTGCACTAACGGT 59.890 50.000 0.00 0.00 42.34 4.83
154 155 1.068610 CAACCCATGTTGCACTAACGG 60.069 52.381 0.00 0.00 44.86 4.44
155 156 2.330231 CAACCCATGTTGCACTAACG 57.670 50.000 0.00 0.00 44.86 3.18
164 165 3.669344 CGGCGCACAACCCATGTT 61.669 61.111 10.83 0.00 41.46 2.71
165 166 4.947147 ACGGCGCACAACCCATGT 62.947 61.111 10.83 0.00 45.34 3.21
166 167 4.403137 CACGGCGCACAACCCATG 62.403 66.667 10.83 0.00 0.00 3.66
167 168 2.813226 ATACACGGCGCACAACCCAT 62.813 55.000 10.83 0.00 0.00 4.00
168 169 3.538785 ATACACGGCGCACAACCCA 62.539 57.895 10.83 0.00 0.00 4.51
169 170 2.744709 ATACACGGCGCACAACCC 60.745 61.111 10.83 0.00 0.00 4.11
170 171 1.366111 ATGATACACGGCGCACAACC 61.366 55.000 10.83 0.00 0.00 3.77
171 172 0.446222 AATGATACACGGCGCACAAC 59.554 50.000 10.83 0.00 0.00 3.32
172 173 1.160989 AAATGATACACGGCGCACAA 58.839 45.000 10.83 0.00 0.00 3.33
173 174 1.135831 CAAAATGATACACGGCGCACA 60.136 47.619 10.83 0.21 0.00 4.57
174 175 1.135803 ACAAAATGATACACGGCGCAC 60.136 47.619 10.83 0.00 0.00 5.34
175 176 1.160989 ACAAAATGATACACGGCGCA 58.839 45.000 10.83 0.00 0.00 6.09
176 177 3.392769 TTACAAAATGATACACGGCGC 57.607 42.857 6.90 0.00 0.00 6.53
177 178 5.197549 CAGATTACAAAATGATACACGGCG 58.802 41.667 4.80 4.80 0.00 6.46
178 179 5.295787 TCCAGATTACAAAATGATACACGGC 59.704 40.000 0.00 0.00 0.00 5.68
179 180 6.511767 GCTCCAGATTACAAAATGATACACGG 60.512 42.308 0.00 0.00 0.00 4.94
180 181 6.037062 TGCTCCAGATTACAAAATGATACACG 59.963 38.462 0.00 0.00 0.00 4.49
181 182 7.148255 TGTGCTCCAGATTACAAAATGATACAC 60.148 37.037 0.00 0.00 0.00 2.90
182 183 6.883756 TGTGCTCCAGATTACAAAATGATACA 59.116 34.615 0.00 0.00 0.00 2.29
183 184 7.066284 AGTGTGCTCCAGATTACAAAATGATAC 59.934 37.037 0.00 0.00 0.00 2.24
184 185 7.066163 CAGTGTGCTCCAGATTACAAAATGATA 59.934 37.037 0.00 0.00 0.00 2.15
185 186 5.948162 AGTGTGCTCCAGATTACAAAATGAT 59.052 36.000 0.00 0.00 0.00 2.45
186 187 5.181811 CAGTGTGCTCCAGATTACAAAATGA 59.818 40.000 0.00 0.00 0.00 2.57
187 188 5.181811 TCAGTGTGCTCCAGATTACAAAATG 59.818 40.000 0.00 0.00 0.00 2.32
188 189 5.316167 TCAGTGTGCTCCAGATTACAAAAT 58.684 37.500 0.00 0.00 0.00 1.82
189 190 4.713553 TCAGTGTGCTCCAGATTACAAAA 58.286 39.130 0.00 0.00 0.00 2.44
190 191 4.350368 TCAGTGTGCTCCAGATTACAAA 57.650 40.909 0.00 0.00 0.00 2.83
191 192 4.558226 ATCAGTGTGCTCCAGATTACAA 57.442 40.909 0.00 0.00 0.00 2.41
192 193 5.675684 TTATCAGTGTGCTCCAGATTACA 57.324 39.130 0.00 0.00 0.00 2.41
193 194 7.559590 AAATTATCAGTGTGCTCCAGATTAC 57.440 36.000 0.00 0.00 0.00 1.89
194 195 7.067372 CCAAAATTATCAGTGTGCTCCAGATTA 59.933 37.037 0.00 0.00 0.00 1.75
195 196 6.127535 CCAAAATTATCAGTGTGCTCCAGATT 60.128 38.462 0.00 0.00 0.00 2.40
196 197 5.359009 CCAAAATTATCAGTGTGCTCCAGAT 59.641 40.000 0.00 0.00 0.00 2.90
197 198 4.701651 CCAAAATTATCAGTGTGCTCCAGA 59.298 41.667 0.00 0.00 0.00 3.86
198 199 4.676196 GCCAAAATTATCAGTGTGCTCCAG 60.676 45.833 0.00 0.00 0.00 3.86
199 200 3.193267 GCCAAAATTATCAGTGTGCTCCA 59.807 43.478 0.00 0.00 0.00 3.86
200 201 3.429410 GGCCAAAATTATCAGTGTGCTCC 60.429 47.826 0.00 0.00 0.00 4.70
201 202 3.429410 GGGCCAAAATTATCAGTGTGCTC 60.429 47.826 4.39 0.00 0.00 4.26
202 203 2.497273 GGGCCAAAATTATCAGTGTGCT 59.503 45.455 4.39 0.00 0.00 4.40
203 204 2.233431 TGGGCCAAAATTATCAGTGTGC 59.767 45.455 2.13 0.00 0.00 4.57
204 205 3.257873 TGTGGGCCAAAATTATCAGTGTG 59.742 43.478 8.40 0.00 0.00 3.82
205 206 3.505386 TGTGGGCCAAAATTATCAGTGT 58.495 40.909 8.40 0.00 0.00 3.55
206 207 3.676873 GCTGTGGGCCAAAATTATCAGTG 60.677 47.826 8.40 0.00 34.27 3.66
207 208 2.497273 GCTGTGGGCCAAAATTATCAGT 59.503 45.455 8.40 0.00 34.27 3.41
208 209 2.762327 AGCTGTGGGCCAAAATTATCAG 59.238 45.455 8.40 10.96 43.05 2.90
209 210 2.818921 AGCTGTGGGCCAAAATTATCA 58.181 42.857 8.40 0.00 43.05 2.15
210 211 5.535753 ATTAGCTGTGGGCCAAAATTATC 57.464 39.130 8.40 0.00 43.05 1.75
211 212 6.014327 CCATATTAGCTGTGGGCCAAAATTAT 60.014 38.462 8.40 0.37 43.05 1.28
212 213 5.304101 CCATATTAGCTGTGGGCCAAAATTA 59.696 40.000 8.40 0.00 43.05 1.40
213 214 4.101430 CCATATTAGCTGTGGGCCAAAATT 59.899 41.667 8.40 0.00 43.05 1.82
214 215 3.642848 CCATATTAGCTGTGGGCCAAAAT 59.357 43.478 8.40 6.19 43.05 1.82
215 216 3.030291 CCATATTAGCTGTGGGCCAAAA 58.970 45.455 8.40 0.00 43.05 2.44
216 217 2.665165 CCATATTAGCTGTGGGCCAAA 58.335 47.619 8.40 0.00 43.05 3.28
217 218 2.363306 CCATATTAGCTGTGGGCCAA 57.637 50.000 8.40 0.00 43.05 4.52
222 223 3.244215 ACATCGACCCATATTAGCTGTGG 60.244 47.826 0.00 0.00 35.94 4.17
223 224 3.995199 ACATCGACCCATATTAGCTGTG 58.005 45.455 0.00 0.00 0.00 3.66
224 225 4.689612 AACATCGACCCATATTAGCTGT 57.310 40.909 0.00 0.00 0.00 4.40
225 226 4.929808 GGTAACATCGACCCATATTAGCTG 59.070 45.833 0.00 0.00 0.00 4.24
226 227 4.591498 TGGTAACATCGACCCATATTAGCT 59.409 41.667 0.00 0.00 46.17 3.32
227 228 4.890088 TGGTAACATCGACCCATATTAGC 58.110 43.478 0.00 0.00 46.17 3.09
244 245 4.627801 TTGCGCGGCCACTGGTAA 62.628 61.111 8.83 0.00 0.00 2.85
245 246 4.627801 TTTGCGCGGCCACTGGTA 62.628 61.111 8.83 0.00 0.00 3.25
248 249 4.688419 CAGTTTGCGCGGCCACTG 62.688 66.667 8.83 8.28 34.25 3.66
258 259 0.936297 CTTGACAAGCGCCAGTTTGC 60.936 55.000 2.29 0.00 41.46 3.68
259 260 0.381801 ACTTGACAAGCGCCAGTTTG 59.618 50.000 15.24 4.38 43.07 2.93
260 261 1.961793 TACTTGACAAGCGCCAGTTT 58.038 45.000 15.24 0.00 0.00 2.66
261 262 1.873591 CTTACTTGACAAGCGCCAGTT 59.126 47.619 15.24 0.00 0.00 3.16
262 263 1.202651 ACTTACTTGACAAGCGCCAGT 60.203 47.619 15.24 1.86 0.00 4.00
263 264 1.195448 CACTTACTTGACAAGCGCCAG 59.805 52.381 15.24 8.24 0.00 4.85
264 265 1.225855 CACTTACTTGACAAGCGCCA 58.774 50.000 15.24 0.00 0.00 5.69
265 266 0.517316 CCACTTACTTGACAAGCGCC 59.483 55.000 15.24 0.00 0.00 6.53
266 267 0.110192 GCCACTTACTTGACAAGCGC 60.110 55.000 15.24 0.00 0.00 5.92
267 268 0.517316 GGCCACTTACTTGACAAGCG 59.483 55.000 15.24 6.64 0.00 4.68
268 269 1.537202 CTGGCCACTTACTTGACAAGC 59.463 52.381 15.24 0.00 0.00 4.01
269 270 3.126001 TCTGGCCACTTACTTGACAAG 57.874 47.619 13.77 13.77 0.00 3.16
270 271 3.788227 ATCTGGCCACTTACTTGACAA 57.212 42.857 0.00 0.00 0.00 3.18
271 272 3.788227 AATCTGGCCACTTACTTGACA 57.212 42.857 0.00 0.00 0.00 3.58
272 273 3.939592 GGTAATCTGGCCACTTACTTGAC 59.060 47.826 23.27 10.45 0.00 3.18
273 274 3.585289 TGGTAATCTGGCCACTTACTTGA 59.415 43.478 23.27 11.09 0.00 3.02
274 275 3.941483 CTGGTAATCTGGCCACTTACTTG 59.059 47.826 23.27 16.02 0.00 3.16
275 276 3.587506 ACTGGTAATCTGGCCACTTACTT 59.412 43.478 23.27 11.91 0.00 2.24
276 277 3.055094 CACTGGTAATCTGGCCACTTACT 60.055 47.826 23.27 9.33 0.00 2.24
277 278 3.055385 TCACTGGTAATCTGGCCACTTAC 60.055 47.826 18.96 18.96 0.00 2.34
278 279 3.055385 GTCACTGGTAATCTGGCCACTTA 60.055 47.826 0.00 0.00 0.00 2.24
279 280 1.985159 TCACTGGTAATCTGGCCACTT 59.015 47.619 0.00 0.30 0.00 3.16
280 281 1.279271 GTCACTGGTAATCTGGCCACT 59.721 52.381 0.00 0.00 0.00 4.00
281 282 1.279271 AGTCACTGGTAATCTGGCCAC 59.721 52.381 0.00 0.00 0.00 5.01
282 283 1.656587 AGTCACTGGTAATCTGGCCA 58.343 50.000 4.71 4.71 0.00 5.36
283 284 2.290323 ACAAGTCACTGGTAATCTGGCC 60.290 50.000 0.00 0.00 0.00 5.36
284 285 3.059352 ACAAGTCACTGGTAATCTGGC 57.941 47.619 0.00 0.00 0.00 4.85
285 286 4.625742 CGTTACAAGTCACTGGTAATCTGG 59.374 45.833 8.09 0.00 33.19 3.86
286 287 4.625742 CCGTTACAAGTCACTGGTAATCTG 59.374 45.833 8.09 2.22 33.19 2.90
287 288 4.282703 ACCGTTACAAGTCACTGGTAATCT 59.717 41.667 8.09 0.00 33.19 2.40
288 289 4.563061 ACCGTTACAAGTCACTGGTAATC 58.437 43.478 8.09 2.10 33.19 1.75
289 290 4.562143 GGACCGTTACAAGTCACTGGTAAT 60.562 45.833 8.09 0.00 33.19 1.89
290 291 3.243839 GGACCGTTACAAGTCACTGGTAA 60.244 47.826 0.03 0.03 34.58 2.85
291 292 2.297033 GGACCGTTACAAGTCACTGGTA 59.703 50.000 0.00 0.00 34.58 3.25
292 293 1.069668 GGACCGTTACAAGTCACTGGT 59.930 52.381 0.00 0.00 34.58 4.00
293 294 1.069513 TGGACCGTTACAAGTCACTGG 59.930 52.381 5.16 0.00 34.58 4.00
294 295 2.132762 GTGGACCGTTACAAGTCACTG 58.867 52.381 5.16 0.00 34.58 3.66
295 296 1.758280 TGTGGACCGTTACAAGTCACT 59.242 47.619 5.16 0.00 34.58 3.41
296 297 2.228138 TGTGGACCGTTACAAGTCAC 57.772 50.000 5.16 0.00 34.58 3.67
297 298 4.811969 ATATGTGGACCGTTACAAGTCA 57.188 40.909 5.16 0.00 34.58 3.41
298 299 6.982141 TGATTATATGTGGACCGTTACAAGTC 59.018 38.462 0.00 0.00 0.00 3.01
299 300 6.880484 TGATTATATGTGGACCGTTACAAGT 58.120 36.000 0.00 0.00 0.00 3.16
300 301 7.962964 ATGATTATATGTGGACCGTTACAAG 57.037 36.000 0.00 0.00 0.00 3.16
301 302 8.740123 AAATGATTATATGTGGACCGTTACAA 57.260 30.769 0.00 0.00 0.00 2.41
302 303 8.740123 AAAATGATTATATGTGGACCGTTACA 57.260 30.769 0.00 0.00 0.00 2.41
303 304 8.287503 GGAAAATGATTATATGTGGACCGTTAC 58.712 37.037 0.00 0.00 0.00 2.50
304 305 7.993758 TGGAAAATGATTATATGTGGACCGTTA 59.006 33.333 0.00 0.00 0.00 3.18
305 306 6.831353 TGGAAAATGATTATATGTGGACCGTT 59.169 34.615 0.00 0.00 0.00 4.44
306 307 6.361433 TGGAAAATGATTATATGTGGACCGT 58.639 36.000 0.00 0.00 0.00 4.83
307 308 6.486657 ACTGGAAAATGATTATATGTGGACCG 59.513 38.462 0.00 0.00 0.00 4.79
308 309 7.823745 ACTGGAAAATGATTATATGTGGACC 57.176 36.000 0.00 0.00 0.00 4.46
309 310 9.561069 ACTACTGGAAAATGATTATATGTGGAC 57.439 33.333 0.00 0.00 0.00 4.02
310 311 9.559732 CACTACTGGAAAATGATTATATGTGGA 57.440 33.333 0.00 0.00 0.00 4.02
311 312 8.786898 CCACTACTGGAAAATGATTATATGTGG 58.213 37.037 0.00 0.00 40.55 4.17
312 313 8.292448 GCCACTACTGGAAAATGATTATATGTG 58.708 37.037 0.00 0.00 40.55 3.21
313 314 7.998383 TGCCACTACTGGAAAATGATTATATGT 59.002 33.333 0.00 0.00 40.55 2.29
314 315 8.394971 TGCCACTACTGGAAAATGATTATATG 57.605 34.615 0.00 0.00 40.55 1.78
315 316 7.175641 GCTGCCACTACTGGAAAATGATTATAT 59.824 37.037 0.00 0.00 40.55 0.86
316 317 6.486657 GCTGCCACTACTGGAAAATGATTATA 59.513 38.462 0.00 0.00 40.55 0.98
317 318 5.300286 GCTGCCACTACTGGAAAATGATTAT 59.700 40.000 0.00 0.00 40.55 1.28
318 319 4.640201 GCTGCCACTACTGGAAAATGATTA 59.360 41.667 0.00 0.00 40.55 1.75
319 320 3.445096 GCTGCCACTACTGGAAAATGATT 59.555 43.478 0.00 0.00 40.55 2.57
320 321 3.019564 GCTGCCACTACTGGAAAATGAT 58.980 45.455 0.00 0.00 40.55 2.45
321 322 2.436417 GCTGCCACTACTGGAAAATGA 58.564 47.619 0.00 0.00 40.55 2.57
322 323 1.131126 CGCTGCCACTACTGGAAAATG 59.869 52.381 0.00 0.00 40.55 2.32
323 324 1.453155 CGCTGCCACTACTGGAAAAT 58.547 50.000 0.00 0.00 40.55 1.82
324 325 0.605319 CCGCTGCCACTACTGGAAAA 60.605 55.000 0.00 0.00 40.55 2.29
325 326 1.003839 CCGCTGCCACTACTGGAAA 60.004 57.895 0.00 0.00 40.55 3.13
326 327 1.911269 TCCGCTGCCACTACTGGAA 60.911 57.895 0.00 0.00 40.55 3.53
327 328 2.283604 TCCGCTGCCACTACTGGA 60.284 61.111 0.00 0.00 40.55 3.86
328 329 2.125512 GTCCGCTGCCACTACTGG 60.126 66.667 0.00 0.00 41.13 4.00
329 330 0.807667 GATGTCCGCTGCCACTACTG 60.808 60.000 0.00 0.00 0.00 2.74
330 331 0.972983 AGATGTCCGCTGCCACTACT 60.973 55.000 0.00 0.00 0.00 2.57
331 332 0.807667 CAGATGTCCGCTGCCACTAC 60.808 60.000 0.00 0.00 0.00 2.73
332 333 1.517361 CAGATGTCCGCTGCCACTA 59.483 57.895 0.00 0.00 0.00 2.74
333 334 2.267006 CAGATGTCCGCTGCCACT 59.733 61.111 0.00 0.00 0.00 4.00
338 339 0.806868 ATTGTTGCAGATGTCCGCTG 59.193 50.000 0.00 0.00 36.47 5.18
339 340 0.806868 CATTGTTGCAGATGTCCGCT 59.193 50.000 0.00 0.00 0.00 5.52
340 341 0.179156 CCATTGTTGCAGATGTCCGC 60.179 55.000 6.19 0.00 0.00 5.54
341 342 1.135603 CACCATTGTTGCAGATGTCCG 60.136 52.381 6.19 0.00 0.00 4.79
342 343 1.403249 GCACCATTGTTGCAGATGTCC 60.403 52.381 0.78 0.00 0.00 4.02
343 344 1.730121 CGCACCATTGTTGCAGATGTC 60.730 52.381 6.99 0.00 0.00 3.06
344 345 0.241749 CGCACCATTGTTGCAGATGT 59.758 50.000 6.99 0.00 0.00 3.06
345 346 0.522626 TCGCACCATTGTTGCAGATG 59.477 50.000 6.99 0.00 0.00 2.90
346 347 0.806868 CTCGCACCATTGTTGCAGAT 59.193 50.000 6.99 0.00 0.00 2.90
347 348 0.250252 TCTCGCACCATTGTTGCAGA 60.250 50.000 6.99 5.78 0.00 4.26
348 349 0.806868 ATCTCGCACCATTGTTGCAG 59.193 50.000 6.99 3.68 0.00 4.41
349 350 0.522626 CATCTCGCACCATTGTTGCA 59.477 50.000 6.99 0.00 0.00 4.08
350 351 0.179156 CCATCTCGCACCATTGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
351 352 0.452987 CCCATCTCGCACCATTGTTG 59.547 55.000 0.00 0.00 0.00 3.33
352 353 0.680921 CCCCATCTCGCACCATTGTT 60.681 55.000 0.00 0.00 0.00 2.83
353 354 1.077501 CCCCATCTCGCACCATTGT 60.078 57.895 0.00 0.00 0.00 2.71
354 355 0.179009 ATCCCCATCTCGCACCATTG 60.179 55.000 0.00 0.00 0.00 2.82
355 356 0.179009 CATCCCCATCTCGCACCATT 60.179 55.000 0.00 0.00 0.00 3.16
356 357 1.056125 TCATCCCCATCTCGCACCAT 61.056 55.000 0.00 0.00 0.00 3.55
357 358 1.688884 TCATCCCCATCTCGCACCA 60.689 57.895 0.00 0.00 0.00 4.17
358 359 1.070445 CTCATCCCCATCTCGCACC 59.930 63.158 0.00 0.00 0.00 5.01
359 360 1.596477 GCTCATCCCCATCTCGCAC 60.596 63.158 0.00 0.00 0.00 5.34
360 361 1.413256 ATGCTCATCCCCATCTCGCA 61.413 55.000 0.00 0.00 0.00 5.10
361 362 0.673022 GATGCTCATCCCCATCTCGC 60.673 60.000 0.00 0.00 35.96 5.03
362 363 0.975135 AGATGCTCATCCCCATCTCG 59.025 55.000 6.27 0.00 43.37 4.04
363 364 2.500910 CCTAGATGCTCATCCCCATCTC 59.499 54.545 6.42 0.00 43.37 2.75
365 366 1.065564 GCCTAGATGCTCATCCCCATC 60.066 57.143 6.27 0.00 38.58 3.51
366 367 0.990374 GCCTAGATGCTCATCCCCAT 59.010 55.000 6.27 0.00 38.58 4.00
367 368 1.475169 CGCCTAGATGCTCATCCCCA 61.475 60.000 6.27 0.00 38.58 4.96
368 369 1.294780 CGCCTAGATGCTCATCCCC 59.705 63.158 6.27 0.00 38.58 4.81
369 370 1.294780 CCGCCTAGATGCTCATCCC 59.705 63.158 6.27 0.00 38.58 3.85
370 371 1.375268 GCCGCCTAGATGCTCATCC 60.375 63.158 6.27 0.00 38.58 3.51
371 372 0.250038 TTGCCGCCTAGATGCTCATC 60.250 55.000 1.75 1.75 38.09 2.92
372 373 0.181114 TTTGCCGCCTAGATGCTCAT 59.819 50.000 0.00 0.00 0.00 2.90
373 374 0.181114 ATTTGCCGCCTAGATGCTCA 59.819 50.000 0.00 0.00 0.00 4.26
374 375 0.871057 GATTTGCCGCCTAGATGCTC 59.129 55.000 0.00 0.00 0.00 4.26
375 376 0.471617 AGATTTGCCGCCTAGATGCT 59.528 50.000 0.00 0.00 0.00 3.79
376 377 0.871057 GAGATTTGCCGCCTAGATGC 59.129 55.000 0.00 0.00 0.00 3.91
377 378 1.869767 GTGAGATTTGCCGCCTAGATG 59.130 52.381 0.00 0.00 0.00 2.90
378 379 1.539065 CGTGAGATTTGCCGCCTAGAT 60.539 52.381 0.00 0.00 0.00 1.98
379 380 0.179111 CGTGAGATTTGCCGCCTAGA 60.179 55.000 0.00 0.00 0.00 2.43
380 381 0.460284 ACGTGAGATTTGCCGCCTAG 60.460 55.000 0.00 0.00 0.00 3.02
381 382 0.739462 CACGTGAGATTTGCCGCCTA 60.739 55.000 10.90 0.00 0.00 3.93
382 383 2.034879 CACGTGAGATTTGCCGCCT 61.035 57.895 10.90 0.00 0.00 5.52
383 384 2.032634 TCACGTGAGATTTGCCGCC 61.033 57.895 15.76 0.00 0.00 6.13
384 385 1.132640 GTCACGTGAGATTTGCCGC 59.867 57.895 20.73 0.00 0.00 6.53
385 386 0.865111 TTGTCACGTGAGATTTGCCG 59.135 50.000 20.73 0.00 0.00 5.69
386 387 1.197721 CCTTGTCACGTGAGATTTGCC 59.802 52.381 20.73 5.76 0.00 4.52
387 388 1.400242 GCCTTGTCACGTGAGATTTGC 60.400 52.381 20.73 16.05 0.00 3.68
388 389 2.146342 AGCCTTGTCACGTGAGATTTG 58.854 47.619 20.73 10.13 0.00 2.32
389 390 2.550830 AGCCTTGTCACGTGAGATTT 57.449 45.000 20.73 0.70 0.00 2.17
390 391 2.826128 TCTAGCCTTGTCACGTGAGATT 59.174 45.455 20.73 6.63 0.00 2.40
391 392 2.447443 TCTAGCCTTGTCACGTGAGAT 58.553 47.619 20.73 8.61 0.00 2.75
392 393 1.905637 TCTAGCCTTGTCACGTGAGA 58.094 50.000 20.73 16.24 0.00 3.27
393 394 2.094494 ACATCTAGCCTTGTCACGTGAG 60.094 50.000 20.73 8.44 0.00 3.51
394 395 1.893137 ACATCTAGCCTTGTCACGTGA 59.107 47.619 15.76 15.76 0.00 4.35
395 396 1.995484 CACATCTAGCCTTGTCACGTG 59.005 52.381 9.94 9.94 0.00 4.49
396 397 1.673033 GCACATCTAGCCTTGTCACGT 60.673 52.381 0.00 0.00 0.00 4.49
397 398 1.002366 GCACATCTAGCCTTGTCACG 58.998 55.000 0.00 0.00 0.00 4.35
398 399 2.099141 TGCACATCTAGCCTTGTCAC 57.901 50.000 0.00 0.00 0.00 3.67
399 400 2.739609 CGATGCACATCTAGCCTTGTCA 60.740 50.000 8.87 0.00 35.72 3.58
400 401 1.863454 CGATGCACATCTAGCCTTGTC 59.137 52.381 8.87 0.00 35.72 3.18
401 402 1.473965 CCGATGCACATCTAGCCTTGT 60.474 52.381 8.87 0.00 35.72 3.16
402 403 1.224075 CCGATGCACATCTAGCCTTG 58.776 55.000 8.87 0.00 35.72 3.61
403 404 0.533755 GCCGATGCACATCTAGCCTT 60.534 55.000 8.87 0.00 37.47 4.35
404 405 1.070445 GCCGATGCACATCTAGCCT 59.930 57.895 8.87 0.00 37.47 4.58
405 406 0.318441 TAGCCGATGCACATCTAGCC 59.682 55.000 15.02 0.84 41.13 3.93
406 407 1.423395 GTAGCCGATGCACATCTAGC 58.577 55.000 8.87 10.73 41.13 3.42
407 408 1.691127 CGTAGCCGATGCACATCTAG 58.309 55.000 8.87 1.85 41.13 2.43
408 409 3.865700 CGTAGCCGATGCACATCTA 57.134 52.632 8.87 0.00 41.13 1.98
409 410 4.738198 CGTAGCCGATGCACATCT 57.262 55.556 8.87 0.00 41.13 2.90
426 427 1.041437 ATCTCCAACCGCTACCTAGC 58.959 55.000 0.00 0.00 45.62 3.42
427 428 1.341531 CCATCTCCAACCGCTACCTAG 59.658 57.143 0.00 0.00 0.00 3.02
428 429 1.063492 TCCATCTCCAACCGCTACCTA 60.063 52.381 0.00 0.00 0.00 3.08
429 430 0.325296 TCCATCTCCAACCGCTACCT 60.325 55.000 0.00 0.00 0.00 3.08
430 431 0.539986 TTCCATCTCCAACCGCTACC 59.460 55.000 0.00 0.00 0.00 3.18
431 432 2.093658 TCTTTCCATCTCCAACCGCTAC 60.094 50.000 0.00 0.00 0.00 3.58
432 433 2.184533 TCTTTCCATCTCCAACCGCTA 58.815 47.619 0.00 0.00 0.00 4.26
433 434 0.984230 TCTTTCCATCTCCAACCGCT 59.016 50.000 0.00 0.00 0.00 5.52
434 435 1.943340 GATCTTTCCATCTCCAACCGC 59.057 52.381 0.00 0.00 0.00 5.68
435 436 2.565841 GGATCTTTCCATCTCCAACCG 58.434 52.381 0.00 0.00 42.12 4.44
436 437 2.423517 GGGGATCTTTCCATCTCCAACC 60.424 54.545 0.00 0.00 42.52 3.77
437 438 2.423517 GGGGGATCTTTCCATCTCCAAC 60.424 54.545 1.81 0.00 44.58 3.77
438 439 1.852965 GGGGGATCTTTCCATCTCCAA 59.147 52.381 1.81 0.00 44.58 3.53
439 440 1.274943 TGGGGGATCTTTCCATCTCCA 60.275 52.381 1.81 0.00 44.58 3.86
440 441 1.423161 CTGGGGGATCTTTCCATCTCC 59.577 57.143 0.00 0.00 44.60 3.71
441 442 1.202867 GCTGGGGGATCTTTCCATCTC 60.203 57.143 0.00 0.00 44.60 2.75
442 443 0.849417 GCTGGGGGATCTTTCCATCT 59.151 55.000 0.00 0.00 44.60 2.90
443 444 0.178978 GGCTGGGGGATCTTTCCATC 60.179 60.000 0.00 0.00 44.60 3.51
444 445 0.628668 AGGCTGGGGGATCTTTCCAT 60.629 55.000 0.00 0.00 44.60 3.41
445 446 0.045623 TAGGCTGGGGGATCTTTCCA 59.954 55.000 0.00 0.00 44.60 3.53
446 447 1.450360 ATAGGCTGGGGGATCTTTCC 58.550 55.000 0.00 0.00 41.77 3.13
447 448 3.602205 AAATAGGCTGGGGGATCTTTC 57.398 47.619 0.00 0.00 0.00 2.62
448 449 4.352658 AAAAATAGGCTGGGGGATCTTT 57.647 40.909 0.00 0.00 0.00 2.52
478 479 2.570135 GGGGTTTTGCATGCTGAAAAA 58.430 42.857 20.33 14.20 32.72 1.94
479 480 1.202746 GGGGGTTTTGCATGCTGAAAA 60.203 47.619 20.33 14.93 0.00 2.29
480 481 0.396060 GGGGGTTTTGCATGCTGAAA 59.604 50.000 20.33 16.25 0.00 2.69
481 482 2.056985 GGGGGTTTTGCATGCTGAA 58.943 52.632 20.33 10.98 0.00 3.02
482 483 3.790223 GGGGGTTTTGCATGCTGA 58.210 55.556 20.33 4.61 0.00 4.26
496 497 7.393515 GGCTTTATATGTTCAATTACTAGGGGG 59.606 40.741 0.00 0.00 0.00 5.40
497 498 8.164070 AGGCTTTATATGTTCAATTACTAGGGG 58.836 37.037 0.00 0.00 0.00 4.79
498 499 9.003658 CAGGCTTTATATGTTCAATTACTAGGG 57.996 37.037 0.00 0.00 0.00 3.53
499 500 8.507249 GCAGGCTTTATATGTTCAATTACTAGG 58.493 37.037 0.00 0.00 0.00 3.02
500 501 9.277783 AGCAGGCTTTATATGTTCAATTACTAG 57.722 33.333 0.00 0.00 0.00 2.57
502 503 9.277783 CTAGCAGGCTTTATATGTTCAATTACT 57.722 33.333 0.00 0.00 0.00 2.24
503 504 8.507249 CCTAGCAGGCTTTATATGTTCAATTAC 58.493 37.037 0.00 0.00 0.00 1.89
504 505 8.621532 CCTAGCAGGCTTTATATGTTCAATTA 57.378 34.615 0.00 0.00 0.00 1.40
572 573 6.038936 TCCTGTCTATGTGAAATCGTTCGATA 59.961 38.462 8.11 0.00 36.46 2.92
626 627 1.843851 AGGAGTCAACAAGGACCAACA 59.156 47.619 0.00 0.00 38.59 3.33
637 638 7.222031 ACGAAAAAGCAAAATAAAGGAGTCAAC 59.778 33.333 0.00 0.00 0.00 3.18
772 774 1.526887 GGATGCGAGGGATTGGTGA 59.473 57.895 0.00 0.00 0.00 4.02
890 892 4.351054 AGGCGGTGGAAAGCAGGG 62.351 66.667 0.00 0.00 34.54 4.45
893 895 3.249189 AGGAGGCGGTGGAAAGCA 61.249 61.111 0.00 0.00 34.54 3.91
894 896 2.436824 GAGGAGGCGGTGGAAAGC 60.437 66.667 0.00 0.00 0.00 3.51
895 897 2.245438 GAGGAGGAGGCGGTGGAAAG 62.245 65.000 0.00 0.00 0.00 2.62
896 898 2.203938 AGGAGGAGGCGGTGGAAA 60.204 61.111 0.00 0.00 0.00 3.13
897 899 2.683933 GAGGAGGAGGCGGTGGAA 60.684 66.667 0.00 0.00 0.00 3.53
898 900 4.779733 GGAGGAGGAGGCGGTGGA 62.780 72.222 0.00 0.00 0.00 4.02
904 906 4.814041 AGCAGGGGAGGAGGAGGC 62.814 72.222 0.00 0.00 0.00 4.70
905 907 2.445654 GAGCAGGGGAGGAGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
1215 1224 9.908152 GCAGGTACAACTTTACTAATCAAAAAT 57.092 29.630 0.00 0.00 0.00 1.82
1216 1225 9.127277 AGCAGGTACAACTTTACTAATCAAAAA 57.873 29.630 0.00 0.00 0.00 1.94
1217 1226 8.685838 AGCAGGTACAACTTTACTAATCAAAA 57.314 30.769 0.00 0.00 0.00 2.44
1218 1227 8.564574 CAAGCAGGTACAACTTTACTAATCAAA 58.435 33.333 0.00 0.00 0.00 2.69
1219 1228 7.717875 ACAAGCAGGTACAACTTTACTAATCAA 59.282 33.333 0.00 0.00 0.00 2.57
1232 1241 1.429930 TGAGGGACAAGCAGGTACAA 58.570 50.000 0.00 0.00 0.00 2.41
1515 1524 2.732619 CCTAACCTCGCACCTCCCC 61.733 68.421 0.00 0.00 0.00 4.81
1797 1806 7.360017 GGACAAAAAGGAAGAACAAAACACAAG 60.360 37.037 0.00 0.00 0.00 3.16
1818 1827 4.890088 AGCACGATTACTAAGTTGGACAA 58.110 39.130 0.00 0.00 0.00 3.18
1934 4509 2.425562 TAGCGCACTGGCTATAGCA 58.574 52.632 25.53 11.21 44.29 3.49
1966 4541 6.243216 TGTAGGTAGTGGAAGAAAACAACT 57.757 37.500 0.00 0.00 0.00 3.16
2218 4797 4.045636 ACAAACAATGACCAGCTCAAAC 57.954 40.909 0.00 0.00 30.60 2.93
2220 4799 3.253188 GCTACAAACAATGACCAGCTCAA 59.747 43.478 0.00 0.00 32.73 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.