Multiple sequence alignment - TraesCS1D01G279100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G279100 chr1D 100.000 2237 0 0 1 2237 376859339 376861575 0.000000e+00 4132
1 TraesCS1D01G279100 chr1B 90.126 1823 106 45 469 2237 503623121 503624923 0.000000e+00 2302
2 TraesCS1D01G279100 chr1B 85.075 335 14 12 96 400 503622782 503623110 2.160000e-80 309
3 TraesCS1D01G279100 chr1B 92.647 68 5 0 16 83 503622733 503622800 5.080000e-17 99
4 TraesCS1D01G279100 chr1A 93.000 1000 50 6 882 1862 477022965 477023963 0.000000e+00 1441
5 TraesCS1D01G279100 chr1A 83.895 267 20 11 97 346 477022161 477022421 1.340000e-57 233
6 TraesCS1D01G279100 chr1A 76.590 346 56 18 1868 2192 477045242 477045583 1.370000e-37 167
7 TraesCS1D01G279100 chr4A 97.727 88 2 0 795 882 350267429 350267516 3.850000e-33 152
8 TraesCS1D01G279100 chr2B 97.727 88 2 0 795 882 357538919 357539006 3.850000e-33 152
9 TraesCS1D01G279100 chr3B 96.591 88 3 0 795 882 797564774 797564687 1.790000e-31 147
10 TraesCS1D01G279100 chr6B 95.455 88 4 0 795 882 621321736 621321649 8.330000e-30 141
11 TraesCS1D01G279100 chr5B 96.970 66 2 0 817 882 455618449 455618384 6.530000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G279100 chr1D 376859339 376861575 2236 False 4132.000000 4132 100.000000 1 2237 1 chr1D.!!$F1 2236
1 TraesCS1D01G279100 chr1B 503622733 503624923 2190 False 903.333333 2302 89.282667 16 2237 3 chr1B.!!$F1 2221
2 TraesCS1D01G279100 chr1A 477022161 477023963 1802 False 837.000000 1441 88.447500 97 1862 2 chr1A.!!$F2 1765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 206 0.111446 TTTTCCCAGTGGCGGAATCA 59.889 50.0 2.61 0.0 39.14 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1464 0.472471 AAGGGGTGAAGCACGAGAAA 59.528 50.0 0.0 0.0 34.83 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.566298 AAAGGAATCGGAGCCAGCCT 61.566 55.000 2.99 0.00 0.00 4.58
54 55 3.397613 GAATCGGAGCCAGCCTGCT 62.398 63.158 0.00 0.00 46.37 4.24
56 57 2.883267 AATCGGAGCCAGCCTGCTTC 62.883 60.000 0.00 0.00 42.95 3.86
78 79 1.808945 TGTTCTAACCGTCCGTCTCTC 59.191 52.381 0.00 0.00 0.00 3.20
83 84 3.203412 CCGTCCGTCTCTCTCCCG 61.203 72.222 0.00 0.00 0.00 5.14
86 87 1.376942 GTCCGTCTCTCTCCCGTCA 60.377 63.158 0.00 0.00 0.00 4.35
87 88 0.959372 GTCCGTCTCTCTCCCGTCAA 60.959 60.000 0.00 0.00 0.00 3.18
88 89 0.251033 TCCGTCTCTCTCCCGTCAAA 60.251 55.000 0.00 0.00 0.00 2.69
89 90 0.601558 CCGTCTCTCTCCCGTCAAAA 59.398 55.000 0.00 0.00 0.00 2.44
90 91 1.000506 CCGTCTCTCTCCCGTCAAAAA 59.999 52.381 0.00 0.00 0.00 1.94
115 116 0.838608 ACCGTCCGTCTCTATCTCCT 59.161 55.000 0.00 0.00 0.00 3.69
116 117 1.202675 ACCGTCCGTCTCTATCTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
117 118 1.515081 CGTCCGTCTCTATCTCCTCC 58.485 60.000 0.00 0.00 0.00 4.30
118 119 1.071071 CGTCCGTCTCTATCTCCTCCT 59.929 57.143 0.00 0.00 0.00 3.69
119 120 2.774687 GTCCGTCTCTATCTCCTCCTC 58.225 57.143 0.00 0.00 0.00 3.71
120 121 1.700739 TCCGTCTCTATCTCCTCCTCC 59.299 57.143 0.00 0.00 0.00 4.30
121 122 1.422024 CCGTCTCTATCTCCTCCTCCA 59.578 57.143 0.00 0.00 0.00 3.86
155 156 3.760035 GAGCCGTTCTCCGCTCCA 61.760 66.667 0.00 0.00 35.24 3.86
156 157 3.708220 GAGCCGTTCTCCGCTCCAG 62.708 68.421 0.00 0.00 35.24 3.86
172 180 0.321653 CCAGAAAAGGACAGGGACCG 60.322 60.000 0.00 0.00 0.00 4.79
181 189 4.016706 CAGGGACCGGAGCCGTTT 62.017 66.667 9.46 0.00 37.81 3.60
198 206 0.111446 TTTTCCCAGTGGCGGAATCA 59.889 50.000 2.61 0.00 39.14 2.57
309 353 2.589014 CTCGCTTGCCTGTTTTTGATC 58.411 47.619 0.00 0.00 0.00 2.92
319 363 3.557054 CCTGTTTTTGATCCGTGAGAGGA 60.557 47.826 0.00 0.00 45.54 3.71
444 537 4.698575 GACTGAATCACCATAGTTCTCCC 58.301 47.826 0.00 0.00 0.00 4.30
445 538 4.366267 ACTGAATCACCATAGTTCTCCCT 58.634 43.478 0.00 0.00 0.00 4.20
450 543 0.824759 ACCATAGTTCTCCCTCGTGC 59.175 55.000 0.00 0.00 0.00 5.34
452 545 1.202463 CCATAGTTCTCCCTCGTGCAG 60.202 57.143 0.00 0.00 0.00 4.41
455 548 0.318762 AGTTCTCCCTCGTGCAGTTC 59.681 55.000 0.00 0.00 0.00 3.01
457 550 1.048601 TTCTCCCTCGTGCAGTTCTT 58.951 50.000 0.00 0.00 0.00 2.52
462 555 1.801178 CCCTCGTGCAGTTCTTTTCTC 59.199 52.381 0.00 0.00 0.00 2.87
463 556 2.548920 CCCTCGTGCAGTTCTTTTCTCT 60.549 50.000 0.00 0.00 0.00 3.10
464 557 3.134458 CCTCGTGCAGTTCTTTTCTCTT 58.866 45.455 0.00 0.00 0.00 2.85
467 560 4.442706 TCGTGCAGTTCTTTTCTCTTTCT 58.557 39.130 0.00 0.00 0.00 2.52
468 561 4.876107 TCGTGCAGTTCTTTTCTCTTTCTT 59.124 37.500 0.00 0.00 0.00 2.52
469 562 4.966366 CGTGCAGTTCTTTTCTCTTTCTTG 59.034 41.667 0.00 0.00 0.00 3.02
470 563 5.277047 GTGCAGTTCTTTTCTCTTTCTTGG 58.723 41.667 0.00 0.00 0.00 3.61
472 565 5.418840 TGCAGTTCTTTTCTCTTTCTTGGTT 59.581 36.000 0.00 0.00 0.00 3.67
473 566 5.974158 GCAGTTCTTTTCTCTTTCTTGGTTC 59.026 40.000 0.00 0.00 0.00 3.62
474 567 6.404734 GCAGTTCTTTTCTCTTTCTTGGTTCA 60.405 38.462 0.00 0.00 0.00 3.18
537 653 7.292713 TCAGTGCAGGATTTATACCGTTATA 57.707 36.000 0.00 0.00 0.00 0.98
543 661 8.212312 TGCAGGATTTATACCGTTATAGGAAAA 58.788 33.333 0.00 0.00 34.73 2.29
567 687 9.783081 AAATTTAATTGGAAAATCAGAACTGCT 57.217 25.926 0.00 0.00 0.00 4.24
574 694 6.003326 TGGAAAATCAGAACTGCTGTGATTA 58.997 36.000 4.17 0.00 44.95 1.75
604 724 0.603065 GAATGGGGCTGTTTGTGTCC 59.397 55.000 0.00 0.00 0.00 4.02
661 781 1.449778 GCCTTAACGGAGGGACTGC 60.450 63.158 4.27 0.00 45.89 4.40
703 838 4.451774 GCCAAGATCATAATGCTCTCAGAC 59.548 45.833 0.00 0.00 0.00 3.51
722 859 5.250543 TCAGACAATCCTCCTGGTCATTAAA 59.749 40.000 0.00 0.00 32.79 1.52
749 886 2.139118 GCTTATGCCGGATGAACTCTC 58.861 52.381 5.05 0.00 0.00 3.20
763 900 1.939785 CTCTCGTGCGCGATACACC 60.940 63.158 24.28 0.00 46.80 4.16
764 901 2.202557 CTCGTGCGCGATACACCA 60.203 61.111 24.28 0.00 46.80 4.17
787 924 6.933521 CCATACTAGGATTCATTCTGTGGAAG 59.066 42.308 0.00 0.00 34.70 3.46
849 986 4.083590 GCTGGAGTGAAGAAGCTACAAAAG 60.084 45.833 0.00 0.00 32.82 2.27
940 1078 4.714632 TCAGAGGGTTAAAAAGGACTGTG 58.285 43.478 0.00 0.00 0.00 3.66
992 1130 5.068723 GTCCGACTGTGATCCCTTCTTATTA 59.931 44.000 0.00 0.00 0.00 0.98
1164 1302 2.078849 TGATTGGCCTCATATACGCG 57.921 50.000 3.53 3.53 0.00 6.01
1198 1336 7.068348 ACATGAGATTTCCATTGATCCTTCTTG 59.932 37.037 0.00 0.00 0.00 3.02
1224 1362 8.723942 ATGGAATCACTATACTTGTGAAGTTC 57.276 34.615 0.00 0.00 45.82 3.01
1268 1409 6.163135 AGTGGTATGCTATACAGTTCTTCC 57.837 41.667 8.07 0.00 0.00 3.46
1269 1410 5.661312 AGTGGTATGCTATACAGTTCTTCCA 59.339 40.000 8.07 0.00 0.00 3.53
1306 1459 8.355169 TGAAGATTGAGATATTTGGCTTTATGC 58.645 33.333 0.00 0.00 41.94 3.14
1311 1464 9.841295 ATTGAGATATTTGGCTTTATGCAAATT 57.159 25.926 0.00 0.00 45.15 1.82
1340 1493 3.017442 GCTTCACCCCTTCTTCCAATAC 58.983 50.000 0.00 0.00 0.00 1.89
1346 1500 5.074515 TCACCCCTTCTTCCAATACTCTTTT 59.925 40.000 0.00 0.00 0.00 2.27
1372 1526 3.433306 TGGTTGTATAGCTGTGCCTTT 57.567 42.857 0.00 0.00 0.00 3.11
1390 1544 5.095490 GCCTTTTATATGCACACTGTTGAC 58.905 41.667 0.00 0.00 0.00 3.18
1426 1580 8.511321 TGTGCTCAGTTAGTAATTTATTGGTTG 58.489 33.333 0.00 0.00 0.00 3.77
1510 1671 6.880484 ACATGATGTATTTGCATTTGTCCAT 58.120 32.000 0.00 0.00 0.00 3.41
1571 1732 7.874016 GCATGATGGGATTTTTATTATCAAGCA 59.126 33.333 0.00 0.00 38.43 3.91
1605 1766 8.517878 CACTCATGTTTCCATTTTCATAGAAGT 58.482 33.333 0.00 0.00 0.00 3.01
1762 1949 2.755655 TGTTCAATGTCAAACGTGGGTT 59.244 40.909 0.00 0.00 38.22 4.11
1979 2172 3.002791 GTCATCATCAAAGACGGAAGCA 58.997 45.455 0.00 0.00 0.00 3.91
2009 2202 5.361571 TGGATAAATTCTTGCATGTGCTCAT 59.638 36.000 6.55 0.00 42.66 2.90
2099 2292 6.203808 TGATACACAATTGCTACTAGTCGT 57.796 37.500 5.05 0.00 0.00 4.34
2102 2295 5.073311 ACACAATTGCTACTAGTCGTCAT 57.927 39.130 5.05 0.00 0.00 3.06
2108 2301 9.245962 ACAATTGCTACTAGTCGTCATATTTAC 57.754 33.333 5.05 0.00 0.00 2.01
2115 2308 7.870509 ACTAGTCGTCATATTTACTGTACCA 57.129 36.000 0.00 0.00 0.00 3.25
2149 2342 8.949177 ACATAAAATTTTCCAAAATCTCCATGC 58.051 29.630 6.72 0.00 37.62 4.06
2204 2401 9.892130 TGAATCTATTTTTCCTAAGAAGAGGAC 57.108 33.333 0.00 0.00 45.61 3.85
2205 2402 8.950208 AATCTATTTTTCCTAAGAAGAGGACG 57.050 34.615 0.00 0.00 45.61 4.79
2206 2403 7.713734 TCTATTTTTCCTAAGAAGAGGACGA 57.286 36.000 0.00 0.00 45.61 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.552848 CCCATGGTATGAGTTGGGCT 59.447 55.000 11.73 0.00 42.23 5.19
1 2 3.116091 CCCATGGTATGAGTTGGGC 57.884 57.895 11.73 0.00 42.23 5.36
3 4 2.442236 AAGCCCATGGTATGAGTTGG 57.558 50.000 11.73 0.00 0.00 3.77
4 5 2.355756 CGAAAGCCCATGGTATGAGTTG 59.644 50.000 11.73 0.00 0.00 3.16
5 6 2.238646 TCGAAAGCCCATGGTATGAGTT 59.761 45.455 11.73 0.00 0.00 3.01
6 7 1.837439 TCGAAAGCCCATGGTATGAGT 59.163 47.619 11.73 0.00 0.00 3.41
7 8 2.620251 TCGAAAGCCCATGGTATGAG 57.380 50.000 11.73 0.00 0.00 2.90
8 9 3.054728 TCTTTCGAAAGCCCATGGTATGA 60.055 43.478 29.10 8.28 35.99 2.15
9 10 3.278574 TCTTTCGAAAGCCCATGGTATG 58.721 45.455 29.10 6.08 35.99 2.39
10 11 3.644966 TCTTTCGAAAGCCCATGGTAT 57.355 42.857 29.10 0.00 35.99 2.73
11 12 3.426787 TTCTTTCGAAAGCCCATGGTA 57.573 42.857 29.10 9.92 35.99 3.25
12 13 2.286365 TTCTTTCGAAAGCCCATGGT 57.714 45.000 29.10 0.00 35.99 3.55
13 14 3.658757 TTTTCTTTCGAAAGCCCATGG 57.341 42.857 29.10 4.14 40.04 3.66
14 15 3.989817 CCTTTTTCTTTCGAAAGCCCATG 59.010 43.478 29.10 18.61 40.04 3.66
18 19 4.617223 CGATTCCTTTTTCTTTCGAAAGCC 59.383 41.667 29.10 9.27 40.04 4.35
51 52 2.762745 GGACGGTTAGAACAAGAAGCA 58.237 47.619 0.00 0.00 0.00 3.91
54 55 2.624838 AGACGGACGGTTAGAACAAGAA 59.375 45.455 0.00 0.00 0.00 2.52
56 57 2.228343 AGAGACGGACGGTTAGAACAAG 59.772 50.000 0.00 0.00 0.00 3.16
92 93 3.119209 GGAGATAGAGACGGACGGTTTTT 60.119 47.826 0.00 0.00 0.00 1.94
93 94 2.426381 GGAGATAGAGACGGACGGTTTT 59.574 50.000 0.00 0.00 0.00 2.43
94 95 2.022934 GGAGATAGAGACGGACGGTTT 58.977 52.381 0.00 0.00 0.00 3.27
95 96 1.212441 AGGAGATAGAGACGGACGGTT 59.788 52.381 0.00 0.00 0.00 4.44
115 116 3.319198 GGTTGCCGGAGTGGAGGA 61.319 66.667 5.05 0.00 42.00 3.71
116 117 4.760047 CGGTTGCCGGAGTGGAGG 62.760 72.222 5.05 0.00 44.15 4.30
155 156 0.473117 TCCGGTCCCTGTCCTTTTCT 60.473 55.000 0.00 0.00 0.00 2.52
156 157 0.036294 CTCCGGTCCCTGTCCTTTTC 60.036 60.000 0.00 0.00 0.00 2.29
172 180 1.971695 CCACTGGGAAAACGGCTCC 60.972 63.158 0.00 0.00 35.59 4.70
181 189 1.198094 TCTGATTCCGCCACTGGGAA 61.198 55.000 0.00 0.00 46.86 3.97
198 206 4.968197 GGCGAGTTGACGAGTTCT 57.032 55.556 0.00 0.00 35.09 3.01
247 291 4.568760 CAGAGAAGAAATTAAGCCGAGTCC 59.431 45.833 0.00 0.00 0.00 3.85
309 353 2.031870 TGATGGTGTATCCTCTCACGG 58.968 52.381 0.00 0.00 34.77 4.94
356 408 1.258982 CGCGCGCTCTGAAGAAAATAT 59.741 47.619 30.48 0.00 0.00 1.28
358 410 1.014044 TCGCGCGCTCTGAAGAAAAT 61.014 50.000 30.48 0.00 0.00 1.82
404 457 4.801624 GGGTACCGAACGGGCGAC 62.802 72.222 17.44 11.37 40.86 5.19
422 475 4.407296 AGGGAGAACTATGGTGATTCAGTC 59.593 45.833 0.00 0.00 0.00 3.51
425 518 3.384789 CGAGGGAGAACTATGGTGATTCA 59.615 47.826 0.00 0.00 0.00 2.57
444 537 4.509600 AGAAAGAGAAAAGAACTGCACGAG 59.490 41.667 0.00 0.00 0.00 4.18
445 538 4.442706 AGAAAGAGAAAAGAACTGCACGA 58.557 39.130 0.00 0.00 0.00 4.35
450 543 7.088589 TGAACCAAGAAAGAGAAAAGAACTG 57.911 36.000 0.00 0.00 0.00 3.16
452 545 7.484140 ACATGAACCAAGAAAGAGAAAAGAAC 58.516 34.615 0.00 0.00 0.00 3.01
457 550 9.739276 ATGTATACATGAACCAAGAAAGAGAAA 57.261 29.630 17.60 0.00 34.83 2.52
463 556 9.040939 CGACATATGTATACATGAACCAAGAAA 57.959 33.333 25.48 4.57 37.15 2.52
464 557 7.655732 CCGACATATGTATACATGAACCAAGAA 59.344 37.037 25.48 5.26 37.15 2.52
467 560 6.042208 TCCCGACATATGTATACATGAACCAA 59.958 38.462 25.48 7.35 37.15 3.67
468 561 5.540719 TCCCGACATATGTATACATGAACCA 59.459 40.000 25.48 8.05 37.15 3.67
469 562 6.032956 TCCCGACATATGTATACATGAACC 57.967 41.667 25.48 12.48 37.15 3.62
470 563 9.647797 TTTATCCCGACATATGTATACATGAAC 57.352 33.333 25.48 13.80 37.15 3.18
472 565 9.647797 GTTTTATCCCGACATATGTATACATGA 57.352 33.333 25.48 13.85 37.15 3.07
473 566 9.430623 TGTTTTATCCCGACATATGTATACATG 57.569 33.333 25.48 15.36 37.15 3.21
474 567 9.653287 CTGTTTTATCCCGACATATGTATACAT 57.347 33.333 21.57 21.57 40.22 2.29
515 608 6.495872 TCCTATAACGGTATAAATCCTGCACT 59.504 38.462 1.13 0.00 0.00 4.40
543 661 8.370182 ACAGCAGTTCTGATTTTCCAATTAAAT 58.630 29.630 3.84 0.00 45.72 1.40
567 687 7.821846 GCCCCATTCAAAATAAGTTTAATCACA 59.178 33.333 0.00 0.00 0.00 3.58
574 694 5.823861 ACAGCCCCATTCAAAATAAGTTT 57.176 34.783 0.00 0.00 0.00 2.66
604 724 2.195922 GGGCTTGCAGCAAATTAATCG 58.804 47.619 9.65 0.00 44.75 3.34
645 765 0.458025 GTCGCAGTCCCTCCGTTAAG 60.458 60.000 0.00 0.00 0.00 1.85
661 781 2.604855 GGCGTGATACATCCTACTGTCG 60.605 54.545 0.00 0.00 0.00 4.35
665 785 3.296854 TCTTGGCGTGATACATCCTACT 58.703 45.455 0.00 0.00 0.00 2.57
722 859 5.594317 AGTTCATCCGGCATAAGCTTATTTT 59.406 36.000 16.46 0.00 41.70 1.82
749 886 0.594028 AGTATGGTGTATCGCGCACG 60.594 55.000 8.75 0.00 37.70 5.34
763 900 7.730084 TCTTCCACAGAATGAATCCTAGTATG 58.270 38.462 0.00 0.00 39.69 2.39
764 901 7.016072 CCTCTTCCACAGAATGAATCCTAGTAT 59.984 40.741 0.00 0.00 39.69 2.12
787 924 6.661805 TGAAACATTTCCTAACCCATAACCTC 59.338 38.462 2.00 0.00 36.36 3.85
940 1078 2.755103 CACAAGGAAAGGAGCCCATAAC 59.245 50.000 0.00 0.00 0.00 1.89
992 1130 4.070265 ACAGCCCCATGCCTGCAT 62.070 61.111 0.00 0.00 42.71 3.96
1131 1269 3.511146 GGCCAATCATCTGTCCTTTGAAA 59.489 43.478 0.00 0.00 0.00 2.69
1198 1336 8.723942 AACTTCACAAGTATAGTGATTCCATC 57.276 34.615 0.00 0.00 44.66 3.51
1224 1362 3.313012 TCCCACTGTCAGAATGTAACG 57.687 47.619 6.91 0.00 37.40 3.18
1268 1409 6.263516 TCTCAATCTTCAAGGAAGCAAATG 57.736 37.500 1.14 0.00 39.29 2.32
1269 1410 8.763984 ATATCTCAATCTTCAAGGAAGCAAAT 57.236 30.769 1.14 0.00 39.29 2.32
1306 1459 3.308530 GGGTGAAGCACGAGAAAATTTG 58.691 45.455 0.00 0.00 34.83 2.32
1311 1464 0.472471 AAGGGGTGAAGCACGAGAAA 59.528 50.000 0.00 0.00 34.83 2.52
1340 1493 7.094634 ACAGCTATACAACCATCAACAAAAGAG 60.095 37.037 0.00 0.00 0.00 2.85
1346 1500 3.689161 GCACAGCTATACAACCATCAACA 59.311 43.478 0.00 0.00 0.00 3.33
1372 1526 6.180771 CACATGTCAACAGTGTGCATATAA 57.819 37.500 0.00 0.00 37.09 0.98
1390 1544 0.949397 ACTGAGCACAACTGCACATG 59.051 50.000 0.00 0.00 46.97 3.21
1409 1563 7.450124 TTGCGGACAACCAATAAATTACTAA 57.550 32.000 0.00 0.00 35.59 2.24
1426 1580 1.007336 CCGTCTAGTGTGTTGCGGAC 61.007 60.000 0.00 0.00 41.45 4.79
1762 1949 5.309638 TCACTCCAACGTCCAATAAATGAA 58.690 37.500 0.00 0.00 0.00 2.57
1948 2141 7.080099 CGTCTTTGATGATGACATTCAAGTTT 58.920 34.615 3.45 0.00 36.82 2.66
1949 2142 6.348786 CCGTCTTTGATGATGACATTCAAGTT 60.349 38.462 3.45 0.00 36.82 2.66
1956 2149 3.624861 GCTTCCGTCTTTGATGATGACAT 59.375 43.478 0.00 0.00 39.67 3.06
1979 2172 7.148373 GCACATGCAAGAATTTATCCAAATGTT 60.148 33.333 0.00 0.00 41.59 2.71
2009 2202 6.479972 AAATCATGGTTCTATACTCCGTCA 57.520 37.500 0.00 0.00 0.00 4.35
2073 2266 8.410912 ACGACTAGTAGCAATTGTGTATCATAA 58.589 33.333 7.40 0.00 0.00 1.90
2085 2278 8.630917 ACAGTAAATATGACGACTAGTAGCAAT 58.369 33.333 2.52 0.12 0.00 3.56
2126 2319 8.915057 TTGCATGGAGATTTTGGAAAATTTTA 57.085 26.923 2.75 0.00 38.64 1.52
2129 2322 7.820578 TTTTGCATGGAGATTTTGGAAAATT 57.179 28.000 0.00 0.00 38.64 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.