Multiple sequence alignment - TraesCS1D01G279000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G279000 chr1D 100.000 6127 0 0 1 6127 376778146 376784272 0.000000e+00 11315
1 TraesCS1D01G279000 chr1B 94.653 3441 110 27 2354 5773 503513507 503516894 0.000000e+00 5267
2 TraesCS1D01G279000 chr1B 90.163 1352 39 28 569 1865 503511742 503513054 0.000000e+00 1674
3 TraesCS1D01G279000 chr1B 94.271 576 28 4 1 574 503511146 503511718 0.000000e+00 876
4 TraesCS1D01G279000 chr1B 89.607 356 14 5 1969 2321 503513069 503513404 1.220000e-116 431
5 TraesCS1D01G279000 chr1A 92.082 3410 157 53 2445 5784 477016660 477020026 0.000000e+00 4697
6 TraesCS1D01G279000 chr1A 88.206 2408 121 68 53 2353 477014139 477016490 0.000000e+00 2723


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G279000 chr1D 376778146 376784272 6126 False 11315 11315 100.0000 1 6127 1 chr1D.!!$F1 6126
1 TraesCS1D01G279000 chr1B 503511146 503516894 5748 False 2062 5267 92.1735 1 5773 4 chr1B.!!$F1 5772
2 TraesCS1D01G279000 chr1A 477014139 477020026 5887 False 3710 4697 90.1440 53 5784 2 chr1A.!!$F1 5731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 366 0.245813 GAACGTCCTGTACCTCCCAC 59.754 60.000 0.00 0.00 0.00 4.61 F
908 982 0.530211 TCGATCGACTCCGTCTCCTC 60.530 60.000 15.15 0.00 37.05 3.71 F
1098 1178 2.435586 TCCTCGTCCTCGTCGTCC 60.436 66.667 0.00 0.00 38.33 4.79 F
1903 2031 1.202417 CCGAGTTAGGACGTCATGCAT 60.202 52.381 18.91 0.00 0.00 3.96 F
2298 2465 0.591659 GCGGTGTTTCTTTGTCCCTC 59.408 55.000 0.00 0.00 0.00 4.30 F
3116 3446 0.667487 CTGACAATGCGACTGTCGGT 60.667 55.000 28.92 18.87 45.10 4.69 F
3275 3605 0.726827 GGCAAAGATCATGAACGCGA 59.273 50.000 15.93 0.00 0.00 5.87 F
4839 5198 1.148027 TGGCCGAATAGAGAGGATCCT 59.852 52.381 16.13 16.13 33.66 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2011 0.172578 TGCATGACGTCCTAACTCGG 59.827 55.000 14.12 0.00 0.00 4.63 R
1903 2031 0.248012 TTTCTCGCCCAACTATCGCA 59.752 50.000 0.00 0.00 0.00 5.10 R
1963 2091 0.694771 AGATTGGGCAGTGCTCTTGA 59.305 50.000 17.64 2.46 0.00 3.02 R
2729 3055 1.003118 TCTTTCTACCCGTGCAGCATT 59.997 47.619 0.00 0.00 0.00 3.56 R
3280 3610 1.080498 TGGTCCAGAGTGGGGATTACT 59.920 52.381 0.00 0.00 38.32 2.24 R
5058 5430 0.248417 CATCACGAGCACGAGGAGAG 60.248 60.000 11.40 1.40 42.66 3.20 R
5066 5438 1.089920 ATTGGAAGCATCACGAGCAC 58.910 50.000 0.00 0.00 0.00 4.40 R
6069 6459 0.173708 GACAAGCTGGGGTCGTCTAG 59.826 60.000 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 2.464865 CCAGTCGATCGATCAAGGAAC 58.535 52.381 22.50 13.29 0.00 3.62
229 230 2.102578 AGGCCCATGTTCAGCATTTAC 58.897 47.619 0.00 0.00 35.19 2.01
246 247 3.695830 TTACATTCTCCTGGCTCGTTT 57.304 42.857 0.00 0.00 0.00 3.60
353 358 1.290955 CTTGCCCGAACGTCCTGTA 59.709 57.895 0.00 0.00 0.00 2.74
361 366 0.245813 GAACGTCCTGTACCTCCCAC 59.754 60.000 0.00 0.00 0.00 4.61
507 513 3.589988 GGACACATCTGGTCAGTTACTG 58.410 50.000 5.94 5.94 37.00 2.74
543 549 1.135199 TCAGAACCGTTCATCCGCTAC 60.135 52.381 13.69 0.00 0.00 3.58
605 641 3.732212 GTCACATCATGGAATCCGATCA 58.268 45.455 0.00 0.00 0.00 2.92
822 883 1.226156 CGACGAGTCTTCTCAGCGG 60.226 63.158 1.56 0.00 40.44 5.52
905 979 1.277440 GCTCGATCGACTCCGTCTC 59.723 63.158 15.15 0.00 37.05 3.36
908 982 0.530211 TCGATCGACTCCGTCTCCTC 60.530 60.000 15.15 0.00 37.05 3.71
1086 1166 3.102107 CTGCTCCTCGTCGTCCTCG 62.102 68.421 0.00 0.00 38.55 4.63
1092 1172 2.800581 CTCGTCGTCCTCGTCCTCG 61.801 68.421 0.00 0.00 38.33 4.63
1094 1174 2.783935 GTCGTCCTCGTCCTCGTC 59.216 66.667 0.00 0.00 38.33 4.20
1098 1178 2.435586 TCCTCGTCCTCGTCGTCC 60.436 66.667 0.00 0.00 38.33 4.79
1103 1183 2.751913 CGTCCTCGTCGTCCTCCTG 61.752 68.421 0.00 0.00 0.00 3.86
1682 1778 3.251004 CACTTCACTTGCTTAACCTCCAC 59.749 47.826 0.00 0.00 0.00 4.02
1756 1880 7.994425 TGTACATGAACCATTATGAACTTGT 57.006 32.000 0.00 2.75 0.00 3.16
1794 1918 2.972625 TGGGCGAGTAGAATTGAAGTG 58.027 47.619 0.00 0.00 0.00 3.16
1815 1939 2.669781 GATGATTTCCATGCTGGGGAA 58.330 47.619 2.86 1.92 42.49 3.97
1883 2011 7.554476 ACTCTAGAAAGATTACCTGAAAATGGC 59.446 37.037 0.00 0.00 0.00 4.40
1884 2012 5.921962 AGAAAGATTACCTGAAAATGGCC 57.078 39.130 0.00 0.00 0.00 5.36
1903 2031 1.202417 CCGAGTTAGGACGTCATGCAT 60.202 52.381 18.91 0.00 0.00 3.96
1948 2076 3.782244 GCACGCAGCACCTTCGAG 61.782 66.667 0.00 0.00 44.79 4.04
1963 2091 3.005897 CCTTCGAGGTGTCATTATCCGAT 59.994 47.826 0.00 0.00 0.00 4.18
1981 2127 1.674962 GATCAAGAGCACTGCCCAATC 59.325 52.381 0.00 0.00 0.00 2.67
2009 2155 1.871676 TGATCGATCGTAGAGTTCCCG 59.128 52.381 20.03 0.00 43.63 5.14
2010 2156 2.141517 GATCGATCGTAGAGTTCCCGA 58.858 52.381 15.94 0.00 43.63 5.14
2011 2157 2.251409 TCGATCGTAGAGTTCCCGAT 57.749 50.000 15.94 0.00 43.63 4.18
2012 2158 1.871676 TCGATCGTAGAGTTCCCGATG 59.128 52.381 15.94 3.55 43.63 3.84
2013 2159 1.069159 CGATCGTAGAGTTCCCGATGG 60.069 57.143 7.03 4.86 43.63 3.51
2014 2160 2.228059 GATCGTAGAGTTCCCGATGGA 58.772 52.381 8.46 0.00 43.63 3.41
2015 2161 2.359981 TCGTAGAGTTCCCGATGGAT 57.640 50.000 0.00 0.00 41.40 3.41
2016 2162 1.954382 TCGTAGAGTTCCCGATGGATG 59.046 52.381 0.00 0.00 41.40 3.51
2017 2163 1.681793 CGTAGAGTTCCCGATGGATGT 59.318 52.381 0.00 0.00 41.40 3.06
2018 2164 2.882761 CGTAGAGTTCCCGATGGATGTA 59.117 50.000 0.00 0.00 41.40 2.29
2019 2165 3.317149 CGTAGAGTTCCCGATGGATGTAA 59.683 47.826 0.00 0.00 41.40 2.41
2052 2198 7.168905 ACCCTCGAACTTGATAAGAAGAAAAT 58.831 34.615 0.00 0.00 0.00 1.82
2054 2200 7.414540 CCCTCGAACTTGATAAGAAGAAAATGG 60.415 40.741 0.00 0.00 0.00 3.16
2105 2251 1.070289 ACGGGAGAAAAGACTGGTGAC 59.930 52.381 0.00 0.00 0.00 3.67
2132 2278 8.161699 ACGACCAGTATTTTGTTTTAGATTGT 57.838 30.769 0.00 0.00 0.00 2.71
2133 2279 9.275398 ACGACCAGTATTTTGTTTTAGATTGTA 57.725 29.630 0.00 0.00 0.00 2.41
2178 2324 3.189287 CCACTTGAATCGAAGAACTTGGG 59.811 47.826 0.00 0.00 43.58 4.12
2233 2379 0.921347 GCGATGTAGTACGTGGCAAG 59.079 55.000 20.75 0.00 38.48 4.01
2234 2380 1.734707 GCGATGTAGTACGTGGCAAGT 60.735 52.381 20.75 11.52 38.48 3.16
2236 2382 2.344441 CGATGTAGTACGTGGCAAGTTG 59.656 50.000 12.12 0.00 0.00 3.16
2237 2383 1.504359 TGTAGTACGTGGCAAGTTGC 58.496 50.000 19.87 19.87 44.08 4.17
2298 2465 0.591659 GCGGTGTTTCTTTGTCCCTC 59.408 55.000 0.00 0.00 0.00 4.30
2300 2467 1.617322 GGTGTTTCTTTGTCCCTCCC 58.383 55.000 0.00 0.00 0.00 4.30
2304 2471 3.894547 TTCTTTGTCCCTCCCGCGC 62.895 63.158 0.00 0.00 0.00 6.86
2335 2502 4.636206 AGATACATCGCTTTTGTTTCCTCC 59.364 41.667 0.00 0.00 0.00 4.30
2401 2655 8.705134 CGTCGGCTGATAATTTTATAACATACA 58.295 33.333 0.00 0.00 0.00 2.29
2467 2770 7.833682 TGATGAAGTAATGTCATGGTTTGGTAT 59.166 33.333 0.00 0.00 35.84 2.73
2483 2787 2.125326 TATGAGACCCTCCGTGGCG 61.125 63.158 0.00 0.00 0.00 5.69
2660 2967 8.306761 GTCCTGGTTTTGAAATATTCATCTTGT 58.693 33.333 0.00 0.00 39.84 3.16
2711 3018 1.132500 CAGGATCCTACCAACCCTCC 58.868 60.000 15.67 0.00 0.00 4.30
2712 3019 0.722676 AGGATCCTACCAACCCTCCA 59.277 55.000 14.27 0.00 0.00 3.86
2753 3079 2.767505 CTGCACGGGTAGAAAGAAACT 58.232 47.619 0.00 0.00 0.00 2.66
2821 3147 1.371183 CCGGCAGACACTTTCCAGA 59.629 57.895 0.00 0.00 0.00 3.86
2832 3158 5.529060 AGACACTTTCCAGACAACAATCTTC 59.471 40.000 0.00 0.00 0.00 2.87
3049 3379 2.889512 ACCCTTCACCCCATTTTTCTC 58.110 47.619 0.00 0.00 0.00 2.87
3116 3446 0.667487 CTGACAATGCGACTGTCGGT 60.667 55.000 28.92 18.87 45.10 4.69
3182 3512 2.027561 GGGGGTATGTATATGCTTGCGA 60.028 50.000 0.00 0.00 0.00 5.10
3188 3518 5.872617 GGTATGTATATGCTTGCGATAACCA 59.127 40.000 0.00 0.00 0.00 3.67
3191 3521 4.935205 TGTATATGCTTGCGATAACCATCC 59.065 41.667 0.00 0.00 0.00 3.51
3201 3531 4.141597 TGCGATAACCATCCCTATTTGTCA 60.142 41.667 0.00 0.00 0.00 3.58
3275 3605 0.726827 GGCAAAGATCATGAACGCGA 59.273 50.000 15.93 0.00 0.00 5.87
3280 3610 3.503827 AAGATCATGAACGCGACACTA 57.496 42.857 15.93 4.95 0.00 2.74
3590 3926 9.610705 ATCATATATAGATTGCAGGAACATCAC 57.389 33.333 0.00 0.00 0.00 3.06
3673 4009 9.660180 ATTTCTCAAAGATACTGAAGAAGTACC 57.340 33.333 0.00 0.00 44.20 3.34
3785 4121 1.344763 AGCGCTTCAGTACAGGAAAGT 59.655 47.619 2.64 0.00 0.00 2.66
3810 4146 5.899631 TTGAAGAACTTGGTACTACCCTT 57.100 39.130 2.59 0.00 37.50 3.95
4151 4509 3.462954 TCAAAGCCATGGGATATCCTTCA 59.537 43.478 21.18 12.05 36.20 3.02
4175 4533 6.095432 AGCACTAAAATTTACATTGTGGCA 57.905 33.333 0.00 0.00 0.00 4.92
4349 4707 5.102313 CAGAGCGATGTCTTTGTGTATACA 58.898 41.667 0.08 0.08 34.31 2.29
4504 4863 8.810652 TTGGTCATAACTTATTTCTTGTTTGC 57.189 30.769 0.00 0.00 0.00 3.68
4675 5034 3.705072 ACTTCTACTCAAACCCTATCCCG 59.295 47.826 0.00 0.00 0.00 5.14
4839 5198 1.148027 TGGCCGAATAGAGAGGATCCT 59.852 52.381 16.13 16.13 33.66 3.24
4878 5237 6.168389 AGACCAGCCATTTTGATTTTGATTC 58.832 36.000 0.00 0.00 0.00 2.52
4952 5311 2.878406 TGCTGAGAGGAAACTTTTTCCG 59.122 45.455 11.20 0.00 44.43 4.30
4972 5331 1.594862 GATGGAAAGATGGAACGAGCG 59.405 52.381 0.00 0.00 0.00 5.03
5054 5426 1.542492 ACACGTTAGGTCGAGGTCAT 58.458 50.000 0.00 0.00 34.70 3.06
5055 5427 2.715046 ACACGTTAGGTCGAGGTCATA 58.285 47.619 0.00 0.00 34.70 2.15
5056 5428 2.421424 ACACGTTAGGTCGAGGTCATAC 59.579 50.000 0.00 0.00 34.70 2.39
5057 5429 2.421073 CACGTTAGGTCGAGGTCATACA 59.579 50.000 0.00 0.00 34.70 2.29
5058 5430 2.421424 ACGTTAGGTCGAGGTCATACAC 59.579 50.000 0.00 0.00 34.70 2.90
5059 5431 2.681848 CGTTAGGTCGAGGTCATACACT 59.318 50.000 0.00 0.00 0.00 3.55
5060 5432 3.242673 CGTTAGGTCGAGGTCATACACTC 60.243 52.174 0.00 0.00 0.00 3.51
5061 5433 2.810870 AGGTCGAGGTCATACACTCT 57.189 50.000 0.00 0.00 0.00 3.24
5062 5434 2.645802 AGGTCGAGGTCATACACTCTC 58.354 52.381 0.00 0.00 0.00 3.20
5063 5435 1.677052 GGTCGAGGTCATACACTCTCC 59.323 57.143 0.00 0.00 0.00 3.71
5064 5436 2.645802 GTCGAGGTCATACACTCTCCT 58.354 52.381 0.00 0.00 0.00 3.69
5065 5437 2.614983 GTCGAGGTCATACACTCTCCTC 59.385 54.545 0.00 0.00 40.62 3.71
5096 5468 2.778299 TGCTTCCAATTCGTTGTAGCT 58.222 42.857 0.00 0.00 32.42 3.32
5097 5469 3.932822 TGCTTCCAATTCGTTGTAGCTA 58.067 40.909 0.00 0.00 32.42 3.32
5098 5470 3.932710 TGCTTCCAATTCGTTGTAGCTAG 59.067 43.478 0.00 0.00 32.42 3.42
5099 5471 3.242446 GCTTCCAATTCGTTGTAGCTAGC 60.242 47.826 6.62 6.62 0.00 3.42
5109 5481 3.061295 CGTTGTAGCTAGCAGTGACATTG 59.939 47.826 18.83 7.00 0.00 2.82
5285 5660 7.069455 TGACTGTAGCTGCTAGTAAATTCCATA 59.931 37.037 10.13 0.00 0.00 2.74
5329 5704 4.342772 CGCAAATGTGTGCTCCTTTATAC 58.657 43.478 0.00 0.00 42.62 1.47
5332 5707 5.106157 GCAAATGTGTGCTCCTTTATACAGT 60.106 40.000 0.00 0.00 41.51 3.55
5333 5708 6.546395 CAAATGTGTGCTCCTTTATACAGTC 58.454 40.000 0.00 0.00 0.00 3.51
5481 5861 3.458118 TGGTTCTATCCCCAAATCGATGT 59.542 43.478 0.00 0.00 0.00 3.06
5557 5940 1.120530 GCAAGGACGGGGAAGAGATA 58.879 55.000 0.00 0.00 0.00 1.98
5600 5984 2.124612 CAGCATCATCCGCCACCA 60.125 61.111 0.00 0.00 0.00 4.17
5656 6040 2.674380 CTGACTGGTTGCAGCCCC 60.674 66.667 17.83 6.94 0.00 5.80
5657 6041 3.496309 CTGACTGGTTGCAGCCCCA 62.496 63.158 17.83 11.13 0.00 4.96
5658 6042 2.985847 GACTGGTTGCAGCCCCAC 60.986 66.667 17.83 4.28 0.00 4.61
5659 6043 4.954970 ACTGGTTGCAGCCCCACG 62.955 66.667 17.83 5.51 0.00 4.94
5743 6133 5.515886 CCCCCTTAACTTGTCCTGTAATTCA 60.516 44.000 0.00 0.00 0.00 2.57
5776 6166 7.093068 ACCCCAAATTTCAGTTTGTTCTAAAGT 60.093 33.333 0.00 0.00 37.37 2.66
5784 6174 7.311364 TCAGTTTGTTCTAAAGTAACACACC 57.689 36.000 0.00 0.00 37.95 4.16
5785 6175 7.107542 TCAGTTTGTTCTAAAGTAACACACCT 58.892 34.615 0.00 0.00 37.95 4.00
5786 6176 7.065324 TCAGTTTGTTCTAAAGTAACACACCTG 59.935 37.037 0.00 0.00 37.95 4.00
5787 6177 5.744666 TTGTTCTAAAGTAACACACCTGC 57.255 39.130 0.00 0.00 36.61 4.85
5788 6178 3.805422 TGTTCTAAAGTAACACACCTGCG 59.195 43.478 0.00 0.00 32.07 5.18
5789 6179 2.409975 TCTAAAGTAACACACCTGCGC 58.590 47.619 0.00 0.00 0.00 6.09
5790 6180 2.139917 CTAAAGTAACACACCTGCGCA 58.860 47.619 10.98 10.98 0.00 6.09
5791 6181 0.661020 AAAGTAACACACCTGCGCAC 59.339 50.000 5.66 0.00 0.00 5.34
5792 6182 1.495584 AAGTAACACACCTGCGCACG 61.496 55.000 5.66 5.13 0.00 5.34
5793 6183 3.342627 TAACACACCTGCGCACGC 61.343 61.111 5.66 8.33 42.35 5.34
5806 6196 3.294493 CACGCAACCCAACCCCTG 61.294 66.667 0.00 0.00 0.00 4.45
5807 6197 3.494254 ACGCAACCCAACCCCTGA 61.494 61.111 0.00 0.00 0.00 3.86
5808 6198 2.203422 CGCAACCCAACCCCTGAA 60.203 61.111 0.00 0.00 0.00 3.02
5809 6199 1.830408 CGCAACCCAACCCCTGAAA 60.830 57.895 0.00 0.00 0.00 2.69
5810 6200 1.184970 CGCAACCCAACCCCTGAAAT 61.185 55.000 0.00 0.00 0.00 2.17
5811 6201 1.055849 GCAACCCAACCCCTGAAATT 58.944 50.000 0.00 0.00 0.00 1.82
5812 6202 1.419762 GCAACCCAACCCCTGAAATTT 59.580 47.619 0.00 0.00 0.00 1.82
5813 6203 2.810032 GCAACCCAACCCCTGAAATTTG 60.810 50.000 0.00 0.00 0.00 2.32
5814 6204 1.055849 ACCCAACCCCTGAAATTTGC 58.944 50.000 0.00 0.00 0.00 3.68
5815 6205 1.055040 CCCAACCCCTGAAATTTGCA 58.945 50.000 0.00 0.00 0.00 4.08
5816 6206 1.419387 CCCAACCCCTGAAATTTGCAA 59.581 47.619 0.00 0.00 0.00 4.08
5817 6207 2.158696 CCCAACCCCTGAAATTTGCAAA 60.159 45.455 15.44 15.44 0.00 3.68
5818 6208 3.549794 CCAACCCCTGAAATTTGCAAAA 58.450 40.909 17.19 0.00 0.00 2.44
5819 6209 3.314913 CCAACCCCTGAAATTTGCAAAAC 59.685 43.478 17.19 11.14 0.00 2.43
5820 6210 4.198530 CAACCCCTGAAATTTGCAAAACT 58.801 39.130 17.19 6.00 0.00 2.66
5821 6211 5.363939 CAACCCCTGAAATTTGCAAAACTA 58.636 37.500 17.19 2.49 0.00 2.24
5822 6212 5.823861 ACCCCTGAAATTTGCAAAACTAT 57.176 34.783 17.19 2.49 0.00 2.12
5823 6213 5.793817 ACCCCTGAAATTTGCAAAACTATC 58.206 37.500 17.19 12.03 0.00 2.08
5824 6214 5.306678 ACCCCTGAAATTTGCAAAACTATCA 59.693 36.000 17.19 15.57 0.00 2.15
5825 6215 5.870978 CCCCTGAAATTTGCAAAACTATCAG 59.129 40.000 24.85 24.85 34.33 2.90
5826 6216 6.295236 CCCCTGAAATTTGCAAAACTATCAGA 60.295 38.462 29.12 6.36 36.11 3.27
5827 6217 7.153985 CCCTGAAATTTGCAAAACTATCAGAA 58.846 34.615 29.12 5.76 36.11 3.02
5828 6218 7.656948 CCCTGAAATTTGCAAAACTATCAGAAA 59.343 33.333 29.12 5.33 36.11 2.52
5829 6219 8.490355 CCTGAAATTTGCAAAACTATCAGAAAC 58.510 33.333 29.12 11.17 36.11 2.78
5830 6220 8.939201 TGAAATTTGCAAAACTATCAGAAACA 57.061 26.923 17.19 1.63 0.00 2.83
5831 6221 8.816144 TGAAATTTGCAAAACTATCAGAAACAC 58.184 29.630 17.19 0.00 0.00 3.32
5832 6222 8.947055 AAATTTGCAAAACTATCAGAAACACT 57.053 26.923 17.19 0.00 0.00 3.55
5833 6223 8.947055 AATTTGCAAAACTATCAGAAACACTT 57.053 26.923 17.19 0.00 0.00 3.16
5834 6224 7.985634 TTTGCAAAACTATCAGAAACACTTC 57.014 32.000 10.02 0.00 0.00 3.01
5835 6225 6.072112 TGCAAAACTATCAGAAACACTTCC 57.928 37.500 0.00 0.00 31.28 3.46
5836 6226 5.827797 TGCAAAACTATCAGAAACACTTCCT 59.172 36.000 0.00 0.00 31.28 3.36
5837 6227 6.017109 TGCAAAACTATCAGAAACACTTCCTC 60.017 38.462 0.00 0.00 31.28 3.71
5838 6228 6.568653 GCAAAACTATCAGAAACACTTCCTCC 60.569 42.308 0.00 0.00 31.28 4.30
5839 6229 4.828072 ACTATCAGAAACACTTCCTCCC 57.172 45.455 0.00 0.00 31.28 4.30
5840 6230 4.168101 ACTATCAGAAACACTTCCTCCCA 58.832 43.478 0.00 0.00 31.28 4.37
5841 6231 2.930826 TCAGAAACACTTCCTCCCAC 57.069 50.000 0.00 0.00 31.28 4.61
5842 6232 2.408565 TCAGAAACACTTCCTCCCACT 58.591 47.619 0.00 0.00 31.28 4.00
5843 6233 2.777692 TCAGAAACACTTCCTCCCACTT 59.222 45.455 0.00 0.00 31.28 3.16
5844 6234 3.971305 TCAGAAACACTTCCTCCCACTTA 59.029 43.478 0.00 0.00 31.28 2.24
5845 6235 4.597507 TCAGAAACACTTCCTCCCACTTAT 59.402 41.667 0.00 0.00 31.28 1.73
5846 6236 5.783360 TCAGAAACACTTCCTCCCACTTATA 59.217 40.000 0.00 0.00 31.28 0.98
5847 6237 6.271391 TCAGAAACACTTCCTCCCACTTATAA 59.729 38.462 0.00 0.00 31.28 0.98
5848 6238 6.940298 CAGAAACACTTCCTCCCACTTATAAA 59.060 38.462 0.00 0.00 31.28 1.40
5849 6239 7.119846 CAGAAACACTTCCTCCCACTTATAAAG 59.880 40.741 0.00 0.00 31.28 1.85
5850 6240 4.844884 ACACTTCCTCCCACTTATAAAGC 58.155 43.478 0.00 0.00 0.00 3.51
5851 6241 4.200092 CACTTCCTCCCACTTATAAAGCC 58.800 47.826 0.00 0.00 0.00 4.35
5852 6242 3.850173 ACTTCCTCCCACTTATAAAGCCA 59.150 43.478 0.00 0.00 0.00 4.75
5853 6243 3.926058 TCCTCCCACTTATAAAGCCAC 57.074 47.619 0.00 0.00 0.00 5.01
5854 6244 3.186283 TCCTCCCACTTATAAAGCCACA 58.814 45.455 0.00 0.00 0.00 4.17
5855 6245 3.054655 TCCTCCCACTTATAAAGCCACAC 60.055 47.826 0.00 0.00 0.00 3.82
5856 6246 3.279434 CTCCCACTTATAAAGCCACACC 58.721 50.000 0.00 0.00 0.00 4.16
5857 6247 2.645297 TCCCACTTATAAAGCCACACCA 59.355 45.455 0.00 0.00 0.00 4.17
5858 6248 3.268334 TCCCACTTATAAAGCCACACCAT 59.732 43.478 0.00 0.00 0.00 3.55
5859 6249 3.632145 CCCACTTATAAAGCCACACCATC 59.368 47.826 0.00 0.00 0.00 3.51
5860 6250 4.526970 CCACTTATAAAGCCACACCATCT 58.473 43.478 0.00 0.00 0.00 2.90
5861 6251 4.336433 CCACTTATAAAGCCACACCATCTG 59.664 45.833 0.00 0.00 0.00 2.90
5862 6252 5.185454 CACTTATAAAGCCACACCATCTGA 58.815 41.667 0.00 0.00 0.00 3.27
5863 6253 5.824624 CACTTATAAAGCCACACCATCTGAT 59.175 40.000 0.00 0.00 0.00 2.90
5864 6254 5.824624 ACTTATAAAGCCACACCATCTGATG 59.175 40.000 10.71 10.71 0.00 3.07
5865 6255 2.592102 AAAGCCACACCATCTGATGT 57.408 45.000 15.95 2.40 0.00 3.06
5866 6256 1.830279 AAGCCACACCATCTGATGTG 58.170 50.000 15.95 15.10 44.79 3.21
5867 6257 0.694771 AGCCACACCATCTGATGTGT 59.305 50.000 15.95 15.64 43.89 3.72
5868 6258 1.089920 GCCACACCATCTGATGTGTC 58.910 55.000 15.95 6.60 43.89 3.67
5869 6259 1.339438 GCCACACCATCTGATGTGTCT 60.339 52.381 15.95 0.07 43.89 3.41
5870 6260 2.877300 GCCACACCATCTGATGTGTCTT 60.877 50.000 15.95 1.78 43.89 3.01
5871 6261 2.745821 CCACACCATCTGATGTGTCTTG 59.254 50.000 15.95 11.48 43.89 3.02
5872 6262 3.405831 CACACCATCTGATGTGTCTTGT 58.594 45.455 15.95 8.15 41.10 3.16
5873 6263 3.817084 CACACCATCTGATGTGTCTTGTT 59.183 43.478 15.95 0.00 41.10 2.83
5874 6264 4.276678 CACACCATCTGATGTGTCTTGTTT 59.723 41.667 15.95 0.00 41.10 2.83
5875 6265 5.469760 CACACCATCTGATGTGTCTTGTTTA 59.530 40.000 15.95 0.00 41.10 2.01
5876 6266 6.149973 CACACCATCTGATGTGTCTTGTTTAT 59.850 38.462 15.95 0.00 41.10 1.40
5877 6267 6.716628 ACACCATCTGATGTGTCTTGTTTATT 59.283 34.615 15.95 0.00 0.00 1.40
5878 6268 7.231317 ACACCATCTGATGTGTCTTGTTTATTT 59.769 33.333 15.95 0.00 0.00 1.40
5879 6269 8.084073 CACCATCTGATGTGTCTTGTTTATTTT 58.916 33.333 15.95 0.00 0.00 1.82
5880 6270 9.295825 ACCATCTGATGTGTCTTGTTTATTTTA 57.704 29.630 15.95 0.00 0.00 1.52
5903 6293 4.657436 TTTTTGCAGGGTCGTGTTTAAT 57.343 36.364 0.00 0.00 0.00 1.40
5904 6294 4.657436 TTTTGCAGGGTCGTGTTTAATT 57.343 36.364 0.00 0.00 0.00 1.40
5905 6295 4.657436 TTTGCAGGGTCGTGTTTAATTT 57.343 36.364 0.00 0.00 0.00 1.82
5906 6296 3.907894 TGCAGGGTCGTGTTTAATTTC 57.092 42.857 0.00 0.00 0.00 2.17
5907 6297 3.482436 TGCAGGGTCGTGTTTAATTTCT 58.518 40.909 0.00 0.00 0.00 2.52
5908 6298 3.252215 TGCAGGGTCGTGTTTAATTTCTG 59.748 43.478 0.00 0.00 0.00 3.02
5909 6299 3.252458 GCAGGGTCGTGTTTAATTTCTGT 59.748 43.478 0.00 0.00 0.00 3.41
5910 6300 4.783242 CAGGGTCGTGTTTAATTTCTGTG 58.217 43.478 0.00 0.00 0.00 3.66
5911 6301 3.252458 AGGGTCGTGTTTAATTTCTGTGC 59.748 43.478 0.00 0.00 0.00 4.57
5912 6302 3.003897 GGGTCGTGTTTAATTTCTGTGCA 59.996 43.478 0.00 0.00 0.00 4.57
5913 6303 4.498345 GGGTCGTGTTTAATTTCTGTGCAA 60.498 41.667 0.00 0.00 0.00 4.08
5914 6304 5.038033 GGTCGTGTTTAATTTCTGTGCAAA 58.962 37.500 0.00 0.00 0.00 3.68
5915 6305 5.051973 GGTCGTGTTTAATTTCTGTGCAAAC 60.052 40.000 0.00 0.00 0.00 2.93
5916 6306 5.513495 GTCGTGTTTAATTTCTGTGCAAACA 59.487 36.000 0.00 0.00 36.91 2.83
5917 6307 5.741510 TCGTGTTTAATTTCTGTGCAAACAG 59.258 36.000 0.00 0.00 39.14 3.16
5918 6308 5.741510 CGTGTTTAATTTCTGTGCAAACAGA 59.258 36.000 4.48 4.48 44.15 3.41
5919 6309 6.417635 CGTGTTTAATTTCTGTGCAAACAGAT 59.582 34.615 9.23 0.00 45.03 2.90
5920 6310 7.357532 CGTGTTTAATTTCTGTGCAAACAGATC 60.358 37.037 9.23 0.00 45.03 2.75
5921 6311 7.649306 GTGTTTAATTTCTGTGCAAACAGATCT 59.351 33.333 9.23 0.00 45.03 2.75
5922 6312 8.845227 TGTTTAATTTCTGTGCAAACAGATCTA 58.155 29.630 9.23 0.10 45.03 1.98
5923 6313 9.677567 GTTTAATTTCTGTGCAAACAGATCTAA 57.322 29.630 9.23 2.31 45.03 2.10
5924 6314 9.677567 TTTAATTTCTGTGCAAACAGATCTAAC 57.322 29.630 9.23 0.00 45.03 2.34
5925 6315 4.990543 TTCTGTGCAAACAGATCTAACG 57.009 40.909 9.23 0.00 45.03 3.18
5926 6316 3.325870 TCTGTGCAAACAGATCTAACGG 58.674 45.455 4.48 0.00 41.34 4.44
5927 6317 3.067106 CTGTGCAAACAGATCTAACGGT 58.933 45.455 0.00 0.00 39.99 4.83
5928 6318 2.805671 TGTGCAAACAGATCTAACGGTG 59.194 45.455 0.00 0.00 0.00 4.94
5929 6319 2.806244 GTGCAAACAGATCTAACGGTGT 59.194 45.455 0.00 0.00 0.00 4.16
5930 6320 3.991773 GTGCAAACAGATCTAACGGTGTA 59.008 43.478 0.00 0.00 0.00 2.90
5931 6321 4.449743 GTGCAAACAGATCTAACGGTGTAA 59.550 41.667 0.00 0.00 0.00 2.41
5932 6322 5.121768 GTGCAAACAGATCTAACGGTGTAAT 59.878 40.000 0.00 0.00 0.00 1.89
5933 6323 6.311935 GTGCAAACAGATCTAACGGTGTAATA 59.688 38.462 0.00 0.00 0.00 0.98
5934 6324 6.874664 TGCAAACAGATCTAACGGTGTAATAA 59.125 34.615 0.00 0.00 0.00 1.40
5935 6325 7.388224 TGCAAACAGATCTAACGGTGTAATAAA 59.612 33.333 0.00 0.00 0.00 1.40
5936 6326 8.231837 GCAAACAGATCTAACGGTGTAATAAAA 58.768 33.333 0.00 0.00 0.00 1.52
5963 6353 2.524611 GGTAGCCGACCCCATAACT 58.475 57.895 0.00 0.00 43.25 2.24
5964 6354 0.835276 GGTAGCCGACCCCATAACTT 59.165 55.000 0.00 0.00 43.25 2.66
5965 6355 2.041701 GGTAGCCGACCCCATAACTTA 58.958 52.381 0.00 0.00 43.25 2.24
5966 6356 2.224137 GGTAGCCGACCCCATAACTTAC 60.224 54.545 0.00 0.00 43.25 2.34
5967 6357 1.575419 AGCCGACCCCATAACTTACA 58.425 50.000 0.00 0.00 0.00 2.41
5968 6358 1.208776 AGCCGACCCCATAACTTACAC 59.791 52.381 0.00 0.00 0.00 2.90
5969 6359 1.065998 GCCGACCCCATAACTTACACA 60.066 52.381 0.00 0.00 0.00 3.72
5970 6360 2.420967 GCCGACCCCATAACTTACACAT 60.421 50.000 0.00 0.00 0.00 3.21
5971 6361 3.181463 GCCGACCCCATAACTTACACATA 60.181 47.826 0.00 0.00 0.00 2.29
5972 6362 4.628074 CCGACCCCATAACTTACACATAG 58.372 47.826 0.00 0.00 0.00 2.23
5973 6363 4.342951 CCGACCCCATAACTTACACATAGA 59.657 45.833 0.00 0.00 0.00 1.98
5974 6364 5.163385 CCGACCCCATAACTTACACATAGAA 60.163 44.000 0.00 0.00 0.00 2.10
5975 6365 6.463897 CCGACCCCATAACTTACACATAGAAT 60.464 42.308 0.00 0.00 0.00 2.40
5976 6366 6.990349 CGACCCCATAACTTACACATAGAATT 59.010 38.462 0.00 0.00 0.00 2.17
5977 6367 7.042051 CGACCCCATAACTTACACATAGAATTG 60.042 40.741 0.00 0.00 0.00 2.32
5978 6368 6.546034 ACCCCATAACTTACACATAGAATTGC 59.454 38.462 0.00 0.00 0.00 3.56
5979 6369 6.016276 CCCCATAACTTACACATAGAATTGCC 60.016 42.308 0.00 0.00 0.00 4.52
5980 6370 6.545666 CCCATAACTTACACATAGAATTGCCA 59.454 38.462 0.00 0.00 0.00 4.92
5981 6371 7.417612 CCATAACTTACACATAGAATTGCCAC 58.582 38.462 0.00 0.00 0.00 5.01
5982 6372 7.283127 CCATAACTTACACATAGAATTGCCACT 59.717 37.037 0.00 0.00 0.00 4.00
5983 6373 9.325198 CATAACTTACACATAGAATTGCCACTA 57.675 33.333 0.00 0.00 0.00 2.74
5984 6374 9.899661 ATAACTTACACATAGAATTGCCACTAA 57.100 29.630 0.00 0.00 0.00 2.24
5985 6375 8.807948 AACTTACACATAGAATTGCCACTAAT 57.192 30.769 0.00 0.00 0.00 1.73
5986 6376 8.213518 ACTTACACATAGAATTGCCACTAATG 57.786 34.615 0.00 0.00 0.00 1.90
6000 6390 3.971150 CACTAATGGAGGTGATCGTCTC 58.029 50.000 6.58 6.58 35.69 3.36
6001 6391 3.381590 CACTAATGGAGGTGATCGTCTCA 59.618 47.826 14.44 4.49 35.69 3.27
6002 6392 4.023980 ACTAATGGAGGTGATCGTCTCAA 58.976 43.478 14.44 6.17 35.07 3.02
6003 6393 3.981071 AATGGAGGTGATCGTCTCAAA 57.019 42.857 14.44 5.33 35.07 2.69
6004 6394 3.981071 ATGGAGGTGATCGTCTCAAAA 57.019 42.857 14.44 3.42 35.07 2.44
6005 6395 3.762407 TGGAGGTGATCGTCTCAAAAA 57.238 42.857 14.44 0.00 35.07 1.94
6006 6396 3.664107 TGGAGGTGATCGTCTCAAAAAG 58.336 45.455 14.44 0.00 35.07 2.27
6007 6397 2.416893 GGAGGTGATCGTCTCAAAAAGC 59.583 50.000 14.44 0.00 35.07 3.51
6008 6398 3.067106 GAGGTGATCGTCTCAAAAAGCA 58.933 45.455 9.42 0.00 35.07 3.91
6009 6399 3.476552 AGGTGATCGTCTCAAAAAGCAA 58.523 40.909 0.00 0.00 35.07 3.91
6010 6400 3.882888 AGGTGATCGTCTCAAAAAGCAAA 59.117 39.130 0.00 0.00 35.07 3.68
6011 6401 4.520492 AGGTGATCGTCTCAAAAAGCAAAT 59.480 37.500 0.00 0.00 35.07 2.32
6012 6402 4.853743 GGTGATCGTCTCAAAAAGCAAATC 59.146 41.667 0.00 0.00 35.07 2.17
6013 6403 5.451908 GTGATCGTCTCAAAAAGCAAATCA 58.548 37.500 0.00 0.00 35.07 2.57
6014 6404 5.914635 GTGATCGTCTCAAAAAGCAAATCAA 59.085 36.000 0.00 0.00 35.07 2.57
6015 6405 6.417635 GTGATCGTCTCAAAAAGCAAATCAAA 59.582 34.615 0.00 0.00 35.07 2.69
6016 6406 6.977502 TGATCGTCTCAAAAAGCAAATCAAAA 59.022 30.769 0.00 0.00 0.00 2.44
6017 6407 7.490725 TGATCGTCTCAAAAAGCAAATCAAAAA 59.509 29.630 0.00 0.00 0.00 1.94
6039 6429 6.959671 AAAAATCAGACGAAACAAAGCAAA 57.040 29.167 0.00 0.00 0.00 3.68
6040 6430 6.959671 AAAATCAGACGAAACAAAGCAAAA 57.040 29.167 0.00 0.00 0.00 2.44
6041 6431 6.573617 AAATCAGACGAAACAAAGCAAAAG 57.426 33.333 0.00 0.00 0.00 2.27
6042 6432 4.027572 TCAGACGAAACAAAGCAAAAGG 57.972 40.909 0.00 0.00 0.00 3.11
6043 6433 3.115554 CAGACGAAACAAAGCAAAAGGG 58.884 45.455 0.00 0.00 0.00 3.95
6044 6434 1.858458 GACGAAACAAAGCAAAAGGGC 59.142 47.619 0.00 0.00 0.00 5.19
6045 6435 1.205893 ACGAAACAAAGCAAAAGGGCA 59.794 42.857 0.00 0.00 35.83 5.36
6046 6436 2.275318 CGAAACAAAGCAAAAGGGCAA 58.725 42.857 0.00 0.00 35.83 4.52
6047 6437 2.675348 CGAAACAAAGCAAAAGGGCAAA 59.325 40.909 0.00 0.00 35.83 3.68
6048 6438 3.485051 CGAAACAAAGCAAAAGGGCAAAC 60.485 43.478 0.00 0.00 35.83 2.93
6049 6439 2.777832 ACAAAGCAAAAGGGCAAACA 57.222 40.000 0.00 0.00 35.83 2.83
6050 6440 3.064900 ACAAAGCAAAAGGGCAAACAA 57.935 38.095 0.00 0.00 35.83 2.83
6051 6441 3.619419 ACAAAGCAAAAGGGCAAACAAT 58.381 36.364 0.00 0.00 35.83 2.71
6052 6442 3.377798 ACAAAGCAAAAGGGCAAACAATG 59.622 39.130 0.00 0.00 35.83 2.82
6070 6460 3.220447 GCACACAAAATGCATGGCT 57.780 47.368 0.00 0.00 42.88 4.75
6071 6461 2.367030 GCACACAAAATGCATGGCTA 57.633 45.000 0.00 0.00 42.88 3.93
6072 6462 2.264813 GCACACAAAATGCATGGCTAG 58.735 47.619 0.00 0.00 42.88 3.42
6073 6463 2.094597 GCACACAAAATGCATGGCTAGA 60.095 45.455 0.00 0.00 42.88 2.43
6074 6464 3.504863 CACACAAAATGCATGGCTAGAC 58.495 45.455 0.00 0.00 0.00 2.59
6075 6465 2.162208 ACACAAAATGCATGGCTAGACG 59.838 45.455 0.00 0.00 0.00 4.18
6076 6466 2.419673 CACAAAATGCATGGCTAGACGA 59.580 45.455 0.00 0.00 0.00 4.20
6077 6467 2.420022 ACAAAATGCATGGCTAGACGAC 59.580 45.455 0.00 0.00 0.00 4.34
6078 6468 1.668419 AAATGCATGGCTAGACGACC 58.332 50.000 0.00 0.00 0.00 4.79
6079 6469 0.179045 AATGCATGGCTAGACGACCC 60.179 55.000 0.00 0.00 0.00 4.46
6080 6470 2.044806 ATGCATGGCTAGACGACCCC 62.045 60.000 0.00 0.00 0.00 4.95
6081 6471 2.731571 GCATGGCTAGACGACCCCA 61.732 63.158 0.00 0.00 0.00 4.96
6082 6472 1.443407 CATGGCTAGACGACCCCAG 59.557 63.158 0.00 0.00 0.00 4.45
6083 6473 2.435693 ATGGCTAGACGACCCCAGC 61.436 63.158 0.00 0.00 0.00 4.85
6084 6474 2.760385 GGCTAGACGACCCCAGCT 60.760 66.667 0.00 0.00 34.41 4.24
6085 6475 2.359967 GGCTAGACGACCCCAGCTT 61.360 63.158 0.00 0.00 34.41 3.74
6086 6476 1.153549 GCTAGACGACCCCAGCTTG 60.154 63.158 0.00 0.00 0.00 4.01
6087 6477 1.889530 GCTAGACGACCCCAGCTTGT 61.890 60.000 0.00 0.00 0.00 3.16
6088 6478 0.173708 CTAGACGACCCCAGCTTGTC 59.826 60.000 0.00 0.00 0.00 3.18
6092 6482 4.021925 GACCCCAGCTTGTCGCCT 62.022 66.667 0.00 0.00 40.39 5.52
6093 6483 2.606519 ACCCCAGCTTGTCGCCTA 60.607 61.111 0.00 0.00 40.39 3.93
6094 6484 2.180159 GACCCCAGCTTGTCGCCTAA 62.180 60.000 0.00 0.00 40.39 2.69
6095 6485 1.450312 CCCCAGCTTGTCGCCTAAG 60.450 63.158 0.00 0.00 40.39 2.18
6096 6486 1.450312 CCCAGCTTGTCGCCTAAGG 60.450 63.158 0.00 0.00 40.39 2.69
6097 6487 1.596934 CCAGCTTGTCGCCTAAGGA 59.403 57.895 0.00 0.00 40.39 3.36
6098 6488 0.036388 CCAGCTTGTCGCCTAAGGAA 60.036 55.000 0.00 0.00 40.39 3.36
6099 6489 1.079503 CAGCTTGTCGCCTAAGGAAC 58.920 55.000 0.00 0.00 40.39 3.62
6100 6490 0.389948 AGCTTGTCGCCTAAGGAACG 60.390 55.000 0.00 0.00 40.39 3.95
6101 6491 0.389426 GCTTGTCGCCTAAGGAACGA 60.389 55.000 0.00 0.00 0.00 3.85
6102 6492 1.630148 CTTGTCGCCTAAGGAACGAG 58.370 55.000 0.00 0.00 36.34 4.18
6103 6493 1.201647 CTTGTCGCCTAAGGAACGAGA 59.798 52.381 0.00 0.00 36.34 4.04
6104 6494 0.809385 TGTCGCCTAAGGAACGAGAG 59.191 55.000 0.00 0.00 36.34 3.20
6119 6509 4.688511 ACGAGAGTAGCAGTTAGAAGTG 57.311 45.455 0.00 0.00 46.88 3.16
6120 6510 4.325119 ACGAGAGTAGCAGTTAGAAGTGA 58.675 43.478 1.16 0.00 46.88 3.41
6121 6511 4.154556 ACGAGAGTAGCAGTTAGAAGTGAC 59.845 45.833 1.16 0.00 46.88 3.67
6122 6512 4.154375 CGAGAGTAGCAGTTAGAAGTGACA 59.846 45.833 1.16 0.00 0.00 3.58
6123 6513 5.636837 GAGAGTAGCAGTTAGAAGTGACAG 58.363 45.833 1.16 0.00 0.00 3.51
6124 6514 4.082463 AGAGTAGCAGTTAGAAGTGACAGC 60.082 45.833 1.16 0.00 0.00 4.40
6125 6515 3.574396 AGTAGCAGTTAGAAGTGACAGCA 59.426 43.478 1.16 0.00 31.58 4.41
6126 6516 3.037431 AGCAGTTAGAAGTGACAGCAG 57.963 47.619 1.16 0.00 31.58 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 0.249573 GATGCGGCAATCAATTGGGG 60.250 55.000 6.82 0.00 38.21 4.96
229 230 1.089920 CCAAACGAGCCAGGAGAATG 58.910 55.000 0.00 0.00 0.00 2.67
246 247 4.974368 ATCGTTTTGTGAGTTTTGTCCA 57.026 36.364 0.00 0.00 0.00 4.02
353 358 3.505386 TGTGCAAAAATATGTGGGAGGT 58.495 40.909 0.00 0.00 0.00 3.85
361 366 8.173775 TGTTTGTGTTTTCTGTGCAAAAATATG 58.826 29.630 0.00 0.00 31.99 1.78
405 411 6.629515 CGTTGGGATCCGGTTATGTATATGAT 60.630 42.308 5.45 0.00 0.00 2.45
406 412 5.336929 CGTTGGGATCCGGTTATGTATATGA 60.337 44.000 5.45 0.00 0.00 2.15
412 418 0.906775 ACGTTGGGATCCGGTTATGT 59.093 50.000 5.45 0.00 0.00 2.29
424 430 3.361977 CGGGCCTGAAACGTTGGG 61.362 66.667 5.28 6.20 0.00 4.12
426 432 2.593436 ACCGGGCCTGAAACGTTG 60.593 61.111 15.09 0.00 0.00 4.10
496 502 3.702045 ACCTATGAGAGCAGTAACTGACC 59.298 47.826 0.00 0.00 32.44 4.02
507 513 4.813697 GGTTCTGATCAAACCTATGAGAGC 59.186 45.833 22.31 6.77 42.42 4.09
605 641 2.345244 CAACTCGCACCCAGCTCT 59.655 61.111 0.00 0.00 42.61 4.09
645 681 1.647084 GAACGTTCCATATGCGGGC 59.353 57.895 17.68 0.00 0.00 6.13
791 848 2.022902 CGTCGTCGTCTGGATCGG 59.977 66.667 0.00 0.00 0.00 4.18
822 883 4.017877 GCGCTCTGTGTGTGTGCC 62.018 66.667 0.00 0.00 39.07 5.01
905 979 1.222113 GAGAAAAGCCCGGGAGAGG 59.778 63.158 29.31 0.00 0.00 3.69
908 982 2.272471 GGGAGAAAAGCCCGGGAG 59.728 66.667 29.31 0.00 35.50 4.30
1086 1166 3.053849 GCAGGAGGACGACGAGGAC 62.054 68.421 0.00 0.00 0.00 3.85
1682 1778 0.883833 AAGAGTGAAATTGGCGCCAG 59.116 50.000 30.75 0.00 0.00 4.85
1730 1827 9.679661 ACAAGTTCATAATGGTTCATGTACATA 57.320 29.630 8.32 0.00 0.00 2.29
1756 1880 8.962679 ACTCGCCCAACTTTCAAAATATATAAA 58.037 29.630 0.00 0.00 0.00 1.40
1759 1883 7.990886 TCTACTCGCCCAACTTTCAAAATATAT 59.009 33.333 0.00 0.00 0.00 0.86
1769 1893 4.015872 TCAATTCTACTCGCCCAACTTT 57.984 40.909 0.00 0.00 0.00 2.66
1865 1993 3.947834 CTCGGCCATTTTCAGGTAATCTT 59.052 43.478 2.24 0.00 0.00 2.40
1868 1996 3.366052 ACTCGGCCATTTTCAGGTAAT 57.634 42.857 2.24 0.00 0.00 1.89
1883 2011 0.172578 TGCATGACGTCCTAACTCGG 59.827 55.000 14.12 0.00 0.00 4.63
1884 2012 1.854743 CATGCATGACGTCCTAACTCG 59.145 52.381 22.59 0.00 0.00 4.18
1903 2031 0.248012 TTTCTCGCCCAACTATCGCA 59.752 50.000 0.00 0.00 0.00 5.10
1928 2056 3.426568 GAAGGTGCTGCGTGCCTC 61.427 66.667 9.96 2.55 42.00 4.70
1945 2073 3.643159 TGATCGGATAATGACACCTCG 57.357 47.619 0.00 0.00 0.00 4.63
1946 2074 5.201713 TCTTGATCGGATAATGACACCTC 57.798 43.478 0.00 0.00 0.00 3.85
1947 2075 4.502259 GCTCTTGATCGGATAATGACACCT 60.502 45.833 0.00 0.00 0.00 4.00
1948 2076 3.743396 GCTCTTGATCGGATAATGACACC 59.257 47.826 0.00 0.00 0.00 4.16
1951 2079 4.447054 CAGTGCTCTTGATCGGATAATGAC 59.553 45.833 0.00 0.00 0.00 3.06
1963 2091 0.694771 AGATTGGGCAGTGCTCTTGA 59.305 50.000 17.64 2.46 0.00 3.02
1981 2127 2.550180 TCTACGATCGATCAGGAAGCAG 59.450 50.000 24.34 8.41 0.00 4.24
2009 2155 5.112129 AGGGTTTACACCTTACATCCATC 57.888 43.478 0.00 0.00 43.65 3.51
2010 2156 4.383770 CGAGGGTTTACACCTTACATCCAT 60.384 45.833 0.00 0.00 43.65 3.41
2011 2157 3.055675 CGAGGGTTTACACCTTACATCCA 60.056 47.826 0.00 0.00 43.65 3.41
2012 2158 3.196254 TCGAGGGTTTACACCTTACATCC 59.804 47.826 0.00 0.00 43.65 3.51
2013 2159 4.460948 TCGAGGGTTTACACCTTACATC 57.539 45.455 0.00 0.00 43.65 3.06
2014 2160 4.285260 AGTTCGAGGGTTTACACCTTACAT 59.715 41.667 0.00 0.00 43.65 2.29
2015 2161 3.642848 AGTTCGAGGGTTTACACCTTACA 59.357 43.478 0.00 0.00 43.65 2.41
2016 2162 4.263018 AGTTCGAGGGTTTACACCTTAC 57.737 45.455 0.00 0.00 43.65 2.34
2017 2163 4.344679 TCAAGTTCGAGGGTTTACACCTTA 59.655 41.667 0.00 0.00 43.65 2.69
2018 2164 3.135167 TCAAGTTCGAGGGTTTACACCTT 59.865 43.478 0.00 0.00 43.65 3.50
2019 2165 2.701951 TCAAGTTCGAGGGTTTACACCT 59.298 45.455 0.00 0.00 43.65 4.00
2052 2198 2.741092 GGCAACACGTCTCCTCCA 59.259 61.111 0.00 0.00 0.00 3.86
2054 2200 1.733399 GTCGGCAACACGTCTCCTC 60.733 63.158 0.00 0.00 34.94 3.71
2105 2251 8.901748 CAATCTAAAACAAAATACTGGTCGTTG 58.098 33.333 0.00 0.00 0.00 4.10
2132 2278 5.732528 GCTCACGCTAGCTACAAGTACAATA 60.733 44.000 13.93 0.00 39.50 1.90
2133 2279 4.673441 CTCACGCTAGCTACAAGTACAAT 58.327 43.478 13.93 0.00 0.00 2.71
2134 2280 3.672511 GCTCACGCTAGCTACAAGTACAA 60.673 47.826 13.93 0.00 39.50 2.41
2135 2281 2.159421 GCTCACGCTAGCTACAAGTACA 60.159 50.000 13.93 0.00 39.50 2.90
2136 2282 2.452105 GCTCACGCTAGCTACAAGTAC 58.548 52.381 13.93 0.00 39.50 2.73
2137 2283 1.404391 GGCTCACGCTAGCTACAAGTA 59.596 52.381 13.93 0.00 42.37 2.24
2237 2383 8.505299 ATGCGCGCATTCAAAAGAATTTTCTG 62.505 38.462 39.13 0.00 38.85 3.02
2238 2384 6.583425 ATGCGCGCATTCAAAAGAATTTTCT 61.583 36.000 39.13 13.61 38.85 2.52
2243 2389 1.921887 CATGCGCGCATTCAAAAGAAT 59.078 42.857 41.73 17.61 33.90 2.40
2251 2418 1.339711 AGAAAAACATGCGCGCATTC 58.660 45.000 41.73 34.01 33.90 2.67
2298 2465 1.227234 TATCTCACATGTGCGCGGG 60.227 57.895 21.38 8.31 0.00 6.13
2300 2467 1.211743 ATGTATCTCACATGTGCGCG 58.788 50.000 21.38 11.52 46.41 6.86
2348 2515 1.005394 GGAAAGCAACCTCGTCGGA 60.005 57.895 0.00 0.00 36.31 4.55
2444 2747 7.171653 TCATACCAAACCATGACATTACTTCA 58.828 34.615 0.00 0.00 0.00 3.02
2445 2748 7.552687 TCTCATACCAAACCATGACATTACTTC 59.447 37.037 0.00 0.00 0.00 3.01
2446 2749 7.336931 GTCTCATACCAAACCATGACATTACTT 59.663 37.037 0.00 0.00 0.00 2.24
2660 2967 5.050363 GCTATCGTTGAACTTTCAGTTGTGA 60.050 40.000 0.00 0.00 38.80 3.58
2678 2985 2.095161 GGATCCTGGTAGTTCGCTATCG 60.095 54.545 3.84 0.00 33.56 2.92
2729 3055 1.003118 TCTTTCTACCCGTGCAGCATT 59.997 47.619 0.00 0.00 0.00 3.56
2753 3079 1.382146 CCGTTGGCCCTACTCCCTA 60.382 63.158 0.00 0.00 0.00 3.53
2821 3147 4.393062 CGAACATAGGCAGAAGATTGTTGT 59.607 41.667 0.00 0.00 0.00 3.32
2945 3271 3.006217 TGTCTGGCTTCATCCATATCTCG 59.994 47.826 0.00 0.00 35.22 4.04
3116 3446 3.060230 CGTTTGCGTCGACAATCAGATAA 59.940 43.478 17.16 0.00 0.00 1.75
3182 3512 5.133221 GCACTGACAAATAGGGATGGTTAT 58.867 41.667 0.00 0.00 0.00 1.89
3188 3518 4.263905 TGAAAGGCACTGACAAATAGGGAT 60.264 41.667 0.00 0.00 40.86 3.85
3191 3521 3.119708 GCTGAAAGGCACTGACAAATAGG 60.120 47.826 0.00 0.00 40.86 2.57
3275 3605 3.012502 TCCAGAGTGGGGATTACTAGTGT 59.987 47.826 5.39 0.00 38.32 3.55
3280 3610 1.080498 TGGTCCAGAGTGGGGATTACT 59.920 52.381 0.00 0.00 38.32 2.24
3521 3851 1.687612 CCAGGATGTGGGTGCTCTT 59.312 57.895 0.00 0.00 43.63 2.85
3590 3926 3.900116 CGCTTAAACACACGATGAACTTG 59.100 43.478 0.00 0.00 0.00 3.16
3673 4009 5.983720 CCGTATGGGTAAATCTCACTACTTG 59.016 44.000 0.00 0.00 0.00 3.16
3785 4121 5.546499 AGGGTAGTACCAAGTTCTTCAATCA 59.454 40.000 20.97 0.00 41.02 2.57
3810 4146 3.045634 TCCCCTTTTCAGTCTCTCAACA 58.954 45.455 0.00 0.00 0.00 3.33
3869 4205 5.766174 ACCGGCAGAAAGAAGTGTTTTATTA 59.234 36.000 0.00 0.00 0.00 0.98
4151 4509 6.520272 TGCCACAATGTAAATTTTAGTGCTT 58.480 32.000 0.00 0.00 0.00 3.91
4175 4533 1.202952 TGTGCCCCGTAAATTTCACCT 60.203 47.619 0.00 0.00 0.00 4.00
4349 4707 2.289444 CCTGGCCATATTTCCGTCGTAT 60.289 50.000 5.51 0.00 0.00 3.06
4504 4863 2.999355 GAGCTCTACAAACTTCAGCCTG 59.001 50.000 6.43 0.00 0.00 4.85
4559 4918 6.070656 TCCTCACTTCACTTTGGAATTCATT 58.929 36.000 7.93 0.00 0.00 2.57
4770 5129 1.206132 CCATCCGTGTTACACCTGCTA 59.794 52.381 10.10 0.00 0.00 3.49
4839 5198 4.021368 GGCTGGTCTCTGTCAGTTAACTAA 60.021 45.833 8.04 0.00 33.81 2.24
4878 5237 4.081420 ACATGTGTAGTCAGCCTAGGAAAG 60.081 45.833 14.75 0.50 0.00 2.62
4952 5311 1.594862 CGCTCGTTCCATCTTTCCATC 59.405 52.381 0.00 0.00 0.00 3.51
4972 5331 4.098055 TCAAGTACTTCGACATCTCTGC 57.902 45.455 4.77 0.00 0.00 4.26
5054 5426 0.321387 ACGAGCACGAGGAGAGTGTA 60.321 55.000 11.40 0.00 41.36 2.90
5055 5427 1.601197 ACGAGCACGAGGAGAGTGT 60.601 57.895 11.40 0.00 41.36 3.55
5056 5428 1.154131 CACGAGCACGAGGAGAGTG 60.154 63.158 11.40 0.00 42.66 3.51
5057 5429 0.678366 ATCACGAGCACGAGGAGAGT 60.678 55.000 11.40 0.00 42.66 3.24
5058 5430 0.248417 CATCACGAGCACGAGGAGAG 60.248 60.000 11.40 1.40 42.66 3.20
5059 5431 1.803289 CATCACGAGCACGAGGAGA 59.197 57.895 11.40 3.03 42.66 3.71
5060 5432 1.875813 GCATCACGAGCACGAGGAG 60.876 63.158 11.40 0.01 42.66 3.69
5061 5433 1.877576 AAGCATCACGAGCACGAGGA 61.878 55.000 11.40 7.82 42.66 3.71
5062 5434 1.416813 GAAGCATCACGAGCACGAGG 61.417 60.000 11.40 1.93 42.66 4.63
5063 5435 1.416813 GGAAGCATCACGAGCACGAG 61.417 60.000 11.40 1.84 42.66 4.18
5064 5436 1.446099 GGAAGCATCACGAGCACGA 60.446 57.895 11.40 0.00 42.66 4.35
5065 5437 1.291184 TTGGAAGCATCACGAGCACG 61.291 55.000 0.76 0.76 45.75 5.34
5066 5438 1.089920 ATTGGAAGCATCACGAGCAC 58.910 50.000 0.00 0.00 0.00 4.40
5109 5481 3.325716 TCTTACTAACCCACCCAGTGTTC 59.674 47.826 0.00 0.00 0.00 3.18
5156 5531 3.772025 ACTGGTAGCAGATTTCTACAGCT 59.228 43.478 27.87 0.00 38.45 4.24
5329 5704 3.606595 ATCTGCCCATATCATCGACTG 57.393 47.619 0.00 0.00 0.00 3.51
5332 5707 7.039434 GGAGATAATATCTGCCCATATCATCGA 60.039 40.741 7.61 0.00 41.33 3.59
5333 5708 7.095910 GGAGATAATATCTGCCCATATCATCG 58.904 42.308 7.61 0.00 41.33 3.84
5481 5861 2.038952 CCCTCCGCAATCCAGATTATCA 59.961 50.000 0.00 0.00 0.00 2.15
5557 5940 2.659610 GGCGACAGCTTCAGGTCT 59.340 61.111 1.02 0.00 44.37 3.85
5678 6068 4.860802 TCCAGGAATAAAATGCTCTCCA 57.139 40.909 0.00 0.00 0.00 3.86
5743 6133 6.326323 ACAAACTGAAATTTGGGGTGTAATCT 59.674 34.615 0.00 0.00 42.74 2.40
5776 6166 3.342627 GCGTGCGCAGGTGTGTTA 61.343 61.111 28.63 0.00 41.49 2.41
5789 6179 3.294493 CAGGGGTTGGGTTGCGTG 61.294 66.667 0.00 0.00 0.00 5.34
5790 6180 2.575455 TTTCAGGGGTTGGGTTGCGT 62.575 55.000 0.00 0.00 0.00 5.24
5791 6181 1.184970 ATTTCAGGGGTTGGGTTGCG 61.185 55.000 0.00 0.00 0.00 4.85
5792 6182 1.055849 AATTTCAGGGGTTGGGTTGC 58.944 50.000 0.00 0.00 0.00 4.17
5793 6183 2.810032 GCAAATTTCAGGGGTTGGGTTG 60.810 50.000 0.00 0.00 0.00 3.77
5794 6184 1.419762 GCAAATTTCAGGGGTTGGGTT 59.580 47.619 0.00 0.00 0.00 4.11
5795 6185 1.055849 GCAAATTTCAGGGGTTGGGT 58.944 50.000 0.00 0.00 0.00 4.51
5796 6186 1.055040 TGCAAATTTCAGGGGTTGGG 58.945 50.000 0.00 0.00 0.00 4.12
5797 6187 2.926778 TTGCAAATTTCAGGGGTTGG 57.073 45.000 0.00 0.00 0.00 3.77
5798 6188 4.198530 AGTTTTGCAAATTTCAGGGGTTG 58.801 39.130 13.65 0.00 0.00 3.77
5799 6189 4.502105 AGTTTTGCAAATTTCAGGGGTT 57.498 36.364 13.65 0.00 0.00 4.11
5800 6190 5.306678 TGATAGTTTTGCAAATTTCAGGGGT 59.693 36.000 13.65 0.00 0.00 4.95
5801 6191 5.792741 TGATAGTTTTGCAAATTTCAGGGG 58.207 37.500 13.65 0.00 0.00 4.79
5802 6192 6.690530 TCTGATAGTTTTGCAAATTTCAGGG 58.309 36.000 25.04 12.81 36.95 4.45
5803 6193 8.490355 GTTTCTGATAGTTTTGCAAATTTCAGG 58.510 33.333 25.04 15.18 36.95 3.86
5804 6194 9.033481 TGTTTCTGATAGTTTTGCAAATTTCAG 57.967 29.630 22.39 22.39 37.38 3.02
5805 6195 8.816144 GTGTTTCTGATAGTTTTGCAAATTTCA 58.184 29.630 13.65 12.03 0.00 2.69
5806 6196 9.034544 AGTGTTTCTGATAGTTTTGCAAATTTC 57.965 29.630 13.65 8.23 0.00 2.17
5807 6197 8.947055 AGTGTTTCTGATAGTTTTGCAAATTT 57.053 26.923 13.65 6.93 0.00 1.82
5808 6198 8.947055 AAGTGTTTCTGATAGTTTTGCAAATT 57.053 26.923 13.65 7.30 0.00 1.82
5809 6199 7.653311 GGAAGTGTTTCTGATAGTTTTGCAAAT 59.347 33.333 13.65 1.10 33.68 2.32
5810 6200 6.978080 GGAAGTGTTTCTGATAGTTTTGCAAA 59.022 34.615 8.05 8.05 33.68 3.68
5811 6201 6.321181 AGGAAGTGTTTCTGATAGTTTTGCAA 59.679 34.615 0.00 0.00 33.68 4.08
5812 6202 5.827797 AGGAAGTGTTTCTGATAGTTTTGCA 59.172 36.000 0.00 0.00 33.68 4.08
5813 6203 6.319141 AGGAAGTGTTTCTGATAGTTTTGC 57.681 37.500 0.00 0.00 33.68 3.68
5814 6204 6.072452 GGGAGGAAGTGTTTCTGATAGTTTTG 60.072 42.308 0.00 0.00 33.68 2.44
5815 6205 6.004574 GGGAGGAAGTGTTTCTGATAGTTTT 58.995 40.000 0.00 0.00 33.68 2.43
5816 6206 5.073144 TGGGAGGAAGTGTTTCTGATAGTTT 59.927 40.000 0.00 0.00 33.68 2.66
5817 6207 4.597507 TGGGAGGAAGTGTTTCTGATAGTT 59.402 41.667 0.00 0.00 33.68 2.24
5818 6208 4.020128 GTGGGAGGAAGTGTTTCTGATAGT 60.020 45.833 0.00 0.00 33.68 2.12
5819 6209 4.223923 AGTGGGAGGAAGTGTTTCTGATAG 59.776 45.833 0.00 0.00 33.68 2.08
5820 6210 4.168101 AGTGGGAGGAAGTGTTTCTGATA 58.832 43.478 0.00 0.00 33.68 2.15
5821 6211 2.982488 AGTGGGAGGAAGTGTTTCTGAT 59.018 45.455 0.00 0.00 33.68 2.90
5822 6212 2.408565 AGTGGGAGGAAGTGTTTCTGA 58.591 47.619 0.00 0.00 33.68 3.27
5823 6213 2.938956 AGTGGGAGGAAGTGTTTCTG 57.061 50.000 0.00 0.00 33.68 3.02
5824 6214 6.697641 TTATAAGTGGGAGGAAGTGTTTCT 57.302 37.500 0.00 0.00 33.68 2.52
5825 6215 6.127980 GCTTTATAAGTGGGAGGAAGTGTTTC 60.128 42.308 0.00 0.00 0.00 2.78
5826 6216 5.710567 GCTTTATAAGTGGGAGGAAGTGTTT 59.289 40.000 0.00 0.00 0.00 2.83
5827 6217 5.254115 GCTTTATAAGTGGGAGGAAGTGTT 58.746 41.667 0.00 0.00 0.00 3.32
5828 6218 4.324331 GGCTTTATAAGTGGGAGGAAGTGT 60.324 45.833 0.00 0.00 0.00 3.55
5829 6219 4.200092 GGCTTTATAAGTGGGAGGAAGTG 58.800 47.826 0.00 0.00 0.00 3.16
5830 6220 3.850173 TGGCTTTATAAGTGGGAGGAAGT 59.150 43.478 0.00 0.00 0.00 3.01
5831 6221 4.200092 GTGGCTTTATAAGTGGGAGGAAG 58.800 47.826 0.00 0.00 0.00 3.46
5832 6222 3.589735 TGTGGCTTTATAAGTGGGAGGAA 59.410 43.478 0.00 0.00 0.00 3.36
5833 6223 3.054655 GTGTGGCTTTATAAGTGGGAGGA 60.055 47.826 0.00 0.00 0.00 3.71
5834 6224 3.279434 GTGTGGCTTTATAAGTGGGAGG 58.721 50.000 0.00 0.00 0.00 4.30
5835 6225 3.279434 GGTGTGGCTTTATAAGTGGGAG 58.721 50.000 0.00 0.00 0.00 4.30
5836 6226 2.645297 TGGTGTGGCTTTATAAGTGGGA 59.355 45.455 0.00 0.00 0.00 4.37
5837 6227 3.080300 TGGTGTGGCTTTATAAGTGGG 57.920 47.619 0.00 0.00 0.00 4.61
5838 6228 4.336433 CAGATGGTGTGGCTTTATAAGTGG 59.664 45.833 0.00 0.00 0.00 4.00
5839 6229 5.185454 TCAGATGGTGTGGCTTTATAAGTG 58.815 41.667 0.00 0.00 0.00 3.16
5840 6230 5.435686 TCAGATGGTGTGGCTTTATAAGT 57.564 39.130 0.00 0.00 0.00 2.24
5841 6231 5.824624 ACATCAGATGGTGTGGCTTTATAAG 59.175 40.000 15.13 0.00 33.60 1.73
5842 6232 5.589855 CACATCAGATGGTGTGGCTTTATAA 59.410 40.000 16.79 0.00 41.46 0.98
5843 6233 5.125356 CACATCAGATGGTGTGGCTTTATA 58.875 41.667 16.79 0.00 41.46 0.98
5844 6234 3.949754 CACATCAGATGGTGTGGCTTTAT 59.050 43.478 16.79 0.00 41.46 1.40
5845 6235 3.346315 CACATCAGATGGTGTGGCTTTA 58.654 45.455 16.79 0.00 41.46 1.85
5846 6236 2.165167 CACATCAGATGGTGTGGCTTT 58.835 47.619 16.79 0.00 41.46 3.51
5847 6237 1.830279 CACATCAGATGGTGTGGCTT 58.170 50.000 16.79 0.00 41.46 4.35
5848 6238 3.564262 CACATCAGATGGTGTGGCT 57.436 52.632 16.79 0.00 41.46 4.75
5853 6243 6.748333 ATAAACAAGACACATCAGATGGTG 57.252 37.500 15.13 12.13 40.78 4.17
5854 6244 7.765695 AAATAAACAAGACACATCAGATGGT 57.234 32.000 15.13 9.45 33.60 3.55
5882 6272 4.657436 ATTAAACACGACCCTGCAAAAA 57.343 36.364 0.00 0.00 0.00 1.94
5883 6273 4.657436 AATTAAACACGACCCTGCAAAA 57.343 36.364 0.00 0.00 0.00 2.44
5884 6274 4.339814 AGAAATTAAACACGACCCTGCAAA 59.660 37.500 0.00 0.00 0.00 3.68
5885 6275 3.886505 AGAAATTAAACACGACCCTGCAA 59.113 39.130 0.00 0.00 0.00 4.08
5886 6276 3.252215 CAGAAATTAAACACGACCCTGCA 59.748 43.478 0.00 0.00 0.00 4.41
5887 6277 3.252458 ACAGAAATTAAACACGACCCTGC 59.748 43.478 0.00 0.00 0.00 4.85
5888 6278 4.783242 CACAGAAATTAAACACGACCCTG 58.217 43.478 0.00 0.00 0.00 4.45
5889 6279 3.252458 GCACAGAAATTAAACACGACCCT 59.748 43.478 0.00 0.00 0.00 4.34
5890 6280 3.003897 TGCACAGAAATTAAACACGACCC 59.996 43.478 0.00 0.00 0.00 4.46
5891 6281 4.217754 TGCACAGAAATTAAACACGACC 57.782 40.909 0.00 0.00 0.00 4.79
5892 6282 5.513495 TGTTTGCACAGAAATTAAACACGAC 59.487 36.000 0.00 0.00 36.61 4.34
5893 6283 5.641709 TGTTTGCACAGAAATTAAACACGA 58.358 33.333 0.00 0.00 36.61 4.35
5894 6284 5.940603 TGTTTGCACAGAAATTAAACACG 57.059 34.783 0.00 0.00 36.61 4.49
5907 6297 2.805671 CACCGTTAGATCTGTTTGCACA 59.194 45.455 5.18 0.00 0.00 4.57
5908 6298 2.806244 ACACCGTTAGATCTGTTTGCAC 59.194 45.455 5.18 0.00 0.00 4.57
5909 6299 3.120321 ACACCGTTAGATCTGTTTGCA 57.880 42.857 5.18 0.00 0.00 4.08
5910 6300 5.796350 ATTACACCGTTAGATCTGTTTGC 57.204 39.130 5.18 0.00 0.00 3.68
5934 6324 3.279434 GGTCGGCTACCTCATGATTTTT 58.721 45.455 0.04 0.00 45.75 1.94
5935 6325 2.919228 GGTCGGCTACCTCATGATTTT 58.081 47.619 0.04 0.00 45.75 1.82
5936 6326 2.622064 GGTCGGCTACCTCATGATTT 57.378 50.000 0.04 0.00 45.75 2.17
5946 6336 2.431782 TGTAAGTTATGGGGTCGGCTAC 59.568 50.000 0.00 0.00 0.00 3.58
5947 6337 2.431782 GTGTAAGTTATGGGGTCGGCTA 59.568 50.000 0.00 0.00 0.00 3.93
5948 6338 1.208776 GTGTAAGTTATGGGGTCGGCT 59.791 52.381 0.00 0.00 0.00 5.52
5949 6339 1.065998 TGTGTAAGTTATGGGGTCGGC 60.066 52.381 0.00 0.00 0.00 5.54
5950 6340 3.553828 ATGTGTAAGTTATGGGGTCGG 57.446 47.619 0.00 0.00 0.00 4.79
5951 6341 5.524971 TCTATGTGTAAGTTATGGGGTCG 57.475 43.478 0.00 0.00 0.00 4.79
5952 6342 7.255139 GCAATTCTATGTGTAAGTTATGGGGTC 60.255 40.741 0.00 0.00 0.00 4.46
5953 6343 6.546034 GCAATTCTATGTGTAAGTTATGGGGT 59.454 38.462 0.00 0.00 0.00 4.95
5954 6344 6.016276 GGCAATTCTATGTGTAAGTTATGGGG 60.016 42.308 0.00 0.00 0.00 4.96
5955 6345 6.545666 TGGCAATTCTATGTGTAAGTTATGGG 59.454 38.462 0.00 0.00 0.00 4.00
5956 6346 7.283127 AGTGGCAATTCTATGTGTAAGTTATGG 59.717 37.037 0.00 0.00 0.00 2.74
5957 6347 8.213518 AGTGGCAATTCTATGTGTAAGTTATG 57.786 34.615 0.00 0.00 0.00 1.90
5958 6348 9.899661 TTAGTGGCAATTCTATGTGTAAGTTAT 57.100 29.630 0.00 0.00 0.00 1.89
5959 6349 9.899661 ATTAGTGGCAATTCTATGTGTAAGTTA 57.100 29.630 0.00 0.00 0.00 2.24
5960 6350 8.677300 CATTAGTGGCAATTCTATGTGTAAGTT 58.323 33.333 0.00 0.00 0.00 2.66
5961 6351 7.283127 CCATTAGTGGCAATTCTATGTGTAAGT 59.717 37.037 0.00 0.00 39.01 2.24
5962 6352 7.498900 TCCATTAGTGGCAATTCTATGTGTAAG 59.501 37.037 0.00 0.00 45.63 2.34
5963 6353 7.342581 TCCATTAGTGGCAATTCTATGTGTAA 58.657 34.615 0.00 0.00 45.63 2.41
5964 6354 6.894682 TCCATTAGTGGCAATTCTATGTGTA 58.105 36.000 0.00 0.00 45.63 2.90
5965 6355 5.754782 TCCATTAGTGGCAATTCTATGTGT 58.245 37.500 0.00 0.00 45.63 3.72
5966 6356 5.240183 CCTCCATTAGTGGCAATTCTATGTG 59.760 44.000 0.00 0.00 45.63 3.21
5967 6357 5.103940 ACCTCCATTAGTGGCAATTCTATGT 60.104 40.000 0.00 0.00 45.63 2.29
5968 6358 5.240183 CACCTCCATTAGTGGCAATTCTATG 59.760 44.000 0.00 0.00 45.63 2.23
5969 6359 5.132648 TCACCTCCATTAGTGGCAATTCTAT 59.867 40.000 0.00 0.00 45.63 1.98
5970 6360 4.473196 TCACCTCCATTAGTGGCAATTCTA 59.527 41.667 0.00 0.00 45.63 2.10
5971 6361 3.266772 TCACCTCCATTAGTGGCAATTCT 59.733 43.478 0.00 0.00 45.63 2.40
5972 6362 3.620488 TCACCTCCATTAGTGGCAATTC 58.380 45.455 0.00 0.00 45.63 2.17
5973 6363 3.737559 TCACCTCCATTAGTGGCAATT 57.262 42.857 0.00 0.00 45.63 2.32
5974 6364 3.745480 CGATCACCTCCATTAGTGGCAAT 60.745 47.826 0.00 0.00 45.63 3.56
5975 6365 2.419990 CGATCACCTCCATTAGTGGCAA 60.420 50.000 0.00 0.00 45.63 4.52
5976 6366 1.138859 CGATCACCTCCATTAGTGGCA 59.861 52.381 0.00 0.00 45.63 4.92
5977 6367 1.139058 ACGATCACCTCCATTAGTGGC 59.861 52.381 0.00 0.00 45.63 5.01
5978 6368 5.708154 TGAGACGATCACCTCCATTAGTGG 61.708 50.000 0.00 0.00 38.92 4.00
5979 6369 3.381590 TGAGACGATCACCTCCATTAGTG 59.618 47.826 8.38 0.00 31.12 2.74
5980 6370 3.632333 TGAGACGATCACCTCCATTAGT 58.368 45.455 8.38 0.00 31.12 2.24
5981 6371 4.655762 TTGAGACGATCACCTCCATTAG 57.344 45.455 8.38 0.00 37.77 1.73
5982 6372 5.414789 TTTTGAGACGATCACCTCCATTA 57.585 39.130 8.38 0.00 37.77 1.90
5983 6373 3.981071 TTTGAGACGATCACCTCCATT 57.019 42.857 8.38 0.00 37.77 3.16
5984 6374 3.981071 TTTTGAGACGATCACCTCCAT 57.019 42.857 8.38 0.00 37.77 3.41
5985 6375 3.664107 CTTTTTGAGACGATCACCTCCA 58.336 45.455 8.38 0.00 37.77 3.86
5986 6376 2.416893 GCTTTTTGAGACGATCACCTCC 59.583 50.000 8.38 0.00 37.77 4.30
5987 6377 3.067106 TGCTTTTTGAGACGATCACCTC 58.933 45.455 0.00 4.81 37.77 3.85
5988 6378 3.126001 TGCTTTTTGAGACGATCACCT 57.874 42.857 0.00 0.00 37.77 4.00
5989 6379 3.896648 TTGCTTTTTGAGACGATCACC 57.103 42.857 0.00 0.00 37.77 4.02
5990 6380 5.451908 TGATTTGCTTTTTGAGACGATCAC 58.548 37.500 0.00 0.00 37.77 3.06
5991 6381 5.687770 TGATTTGCTTTTTGAGACGATCA 57.312 34.783 0.00 0.00 35.62 2.92
5992 6382 6.991485 TTTGATTTGCTTTTTGAGACGATC 57.009 33.333 0.00 0.00 0.00 3.69
5993 6383 7.769272 TTTTTGATTTGCTTTTTGAGACGAT 57.231 28.000 0.00 0.00 0.00 3.73
6016 6406 6.959671 TTTGCTTTGTTTCGTCTGATTTTT 57.040 29.167 0.00 0.00 0.00 1.94
6017 6407 6.035975 CCTTTTGCTTTGTTTCGTCTGATTTT 59.964 34.615 0.00 0.00 0.00 1.82
6018 6408 5.519927 CCTTTTGCTTTGTTTCGTCTGATTT 59.480 36.000 0.00 0.00 0.00 2.17
6019 6409 5.043248 CCTTTTGCTTTGTTTCGTCTGATT 58.957 37.500 0.00 0.00 0.00 2.57
6020 6410 4.499696 CCCTTTTGCTTTGTTTCGTCTGAT 60.500 41.667 0.00 0.00 0.00 2.90
6021 6411 3.181491 CCCTTTTGCTTTGTTTCGTCTGA 60.181 43.478 0.00 0.00 0.00 3.27
6022 6412 3.115554 CCCTTTTGCTTTGTTTCGTCTG 58.884 45.455 0.00 0.00 0.00 3.51
6023 6413 2.481276 GCCCTTTTGCTTTGTTTCGTCT 60.481 45.455 0.00 0.00 0.00 4.18
6024 6414 1.858458 GCCCTTTTGCTTTGTTTCGTC 59.142 47.619 0.00 0.00 0.00 4.20
6025 6415 1.205893 TGCCCTTTTGCTTTGTTTCGT 59.794 42.857 0.00 0.00 0.00 3.85
6026 6416 1.933247 TGCCCTTTTGCTTTGTTTCG 58.067 45.000 0.00 0.00 0.00 3.46
6027 6417 3.438434 TGTTTGCCCTTTTGCTTTGTTTC 59.562 39.130 0.00 0.00 0.00 2.78
6028 6418 3.416156 TGTTTGCCCTTTTGCTTTGTTT 58.584 36.364 0.00 0.00 0.00 2.83
6029 6419 3.064900 TGTTTGCCCTTTTGCTTTGTT 57.935 38.095 0.00 0.00 0.00 2.83
6030 6420 2.777832 TGTTTGCCCTTTTGCTTTGT 57.222 40.000 0.00 0.00 0.00 2.83
6031 6421 3.792794 GCATTGTTTGCCCTTTTGCTTTG 60.793 43.478 0.00 0.00 46.15 2.77
6032 6422 2.358582 GCATTGTTTGCCCTTTTGCTTT 59.641 40.909 0.00 0.00 46.15 3.51
6033 6423 1.948834 GCATTGTTTGCCCTTTTGCTT 59.051 42.857 0.00 0.00 46.15 3.91
6034 6424 1.596603 GCATTGTTTGCCCTTTTGCT 58.403 45.000 0.00 0.00 46.15 3.91
6044 6434 4.274421 TGCATTTTGTGTGCATTGTTTG 57.726 36.364 0.00 0.00 46.76 2.93
6052 6442 2.094597 TCTAGCCATGCATTTTGTGTGC 60.095 45.455 0.00 0.00 42.81 4.57
6053 6443 3.504863 GTCTAGCCATGCATTTTGTGTG 58.495 45.455 0.00 0.00 0.00 3.82
6054 6444 2.162208 CGTCTAGCCATGCATTTTGTGT 59.838 45.455 0.00 0.00 0.00 3.72
6055 6445 2.419673 TCGTCTAGCCATGCATTTTGTG 59.580 45.455 0.00 0.00 0.00 3.33
6056 6446 2.420022 GTCGTCTAGCCATGCATTTTGT 59.580 45.455 0.00 0.00 0.00 2.83
6057 6447 2.223340 GGTCGTCTAGCCATGCATTTTG 60.223 50.000 0.00 0.00 0.00 2.44
6058 6448 2.017049 GGTCGTCTAGCCATGCATTTT 58.983 47.619 0.00 0.00 0.00 1.82
6059 6449 1.668419 GGTCGTCTAGCCATGCATTT 58.332 50.000 0.00 0.00 0.00 2.32
6060 6450 0.179045 GGGTCGTCTAGCCATGCATT 60.179 55.000 0.00 0.00 45.71 3.56
6061 6451 1.447643 GGGTCGTCTAGCCATGCAT 59.552 57.895 0.00 0.00 45.71 3.96
6062 6452 2.900273 GGGTCGTCTAGCCATGCA 59.100 61.111 0.00 0.00 45.71 3.96
6067 6457 2.359967 AAGCTGGGGTCGTCTAGCC 61.360 63.158 0.00 0.00 45.69 3.93
6068 6458 1.153549 CAAGCTGGGGTCGTCTAGC 60.154 63.158 0.00 0.00 36.45 3.42
6069 6459 0.173708 GACAAGCTGGGGTCGTCTAG 59.826 60.000 0.00 0.00 0.00 2.43
6070 6460 2.273908 GACAAGCTGGGGTCGTCTA 58.726 57.895 0.00 0.00 0.00 2.59
6071 6461 3.060866 GACAAGCTGGGGTCGTCT 58.939 61.111 0.00 0.00 0.00 4.18
6083 6473 1.201647 TCTCGTTCCTTAGGCGACAAG 59.798 52.381 0.00 0.00 0.00 3.16
6084 6474 1.201647 CTCTCGTTCCTTAGGCGACAA 59.798 52.381 0.00 0.00 0.00 3.18
6085 6475 0.809385 CTCTCGTTCCTTAGGCGACA 59.191 55.000 0.00 0.00 0.00 4.35
6086 6476 0.810016 ACTCTCGTTCCTTAGGCGAC 59.190 55.000 0.00 0.00 0.00 5.19
6087 6477 2.286872 CTACTCTCGTTCCTTAGGCGA 58.713 52.381 0.00 0.00 0.00 5.54
6088 6478 1.268640 GCTACTCTCGTTCCTTAGGCG 60.269 57.143 0.00 0.00 0.00 5.52
6089 6479 1.749634 TGCTACTCTCGTTCCTTAGGC 59.250 52.381 0.00 0.00 0.00 3.93
6090 6480 3.018149 ACTGCTACTCTCGTTCCTTAGG 58.982 50.000 0.00 0.00 0.00 2.69
6091 6481 4.705337 AACTGCTACTCTCGTTCCTTAG 57.295 45.455 0.00 0.00 0.00 2.18
6092 6482 5.494724 TCTAACTGCTACTCTCGTTCCTTA 58.505 41.667 0.00 0.00 0.00 2.69
6093 6483 4.333690 TCTAACTGCTACTCTCGTTCCTT 58.666 43.478 0.00 0.00 0.00 3.36
6094 6484 3.952931 TCTAACTGCTACTCTCGTTCCT 58.047 45.455 0.00 0.00 0.00 3.36
6095 6485 4.156373 ACTTCTAACTGCTACTCTCGTTCC 59.844 45.833 0.00 0.00 0.00 3.62
6096 6486 5.090083 CACTTCTAACTGCTACTCTCGTTC 58.910 45.833 0.00 0.00 0.00 3.95
6097 6487 4.760715 TCACTTCTAACTGCTACTCTCGTT 59.239 41.667 0.00 0.00 0.00 3.85
6098 6488 4.154556 GTCACTTCTAACTGCTACTCTCGT 59.845 45.833 0.00 0.00 0.00 4.18
6099 6489 4.154375 TGTCACTTCTAACTGCTACTCTCG 59.846 45.833 0.00 0.00 0.00 4.04
6100 6490 5.630661 TGTCACTTCTAACTGCTACTCTC 57.369 43.478 0.00 0.00 0.00 3.20
6101 6491 4.082463 GCTGTCACTTCTAACTGCTACTCT 60.082 45.833 0.00 0.00 37.37 3.24
6102 6492 4.170256 GCTGTCACTTCTAACTGCTACTC 58.830 47.826 0.00 0.00 37.37 2.59
6103 6493 3.574396 TGCTGTCACTTCTAACTGCTACT 59.426 43.478 6.06 0.00 39.99 2.57
6104 6494 3.914312 TGCTGTCACTTCTAACTGCTAC 58.086 45.455 6.06 0.00 39.99 3.58
6105 6495 4.179926 CTGCTGTCACTTCTAACTGCTA 57.820 45.455 6.06 0.00 39.99 3.49
6106 6496 3.037431 CTGCTGTCACTTCTAACTGCT 57.963 47.619 6.06 0.00 39.99 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.