Multiple sequence alignment - TraesCS1D01G278800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G278800 chr1D 100.000 3728 0 0 1 3728 376620110 376623837 0.000000e+00 6885.0
1 TraesCS1D01G278800 chr1A 92.248 3341 133 36 309 3584 476908493 476911772 0.000000e+00 4619.0
2 TraesCS1D01G278800 chr1A 82.540 315 42 9 1 306 476907958 476908268 7.940000e-67 265.0
3 TraesCS1D01G278800 chr1B 91.631 2330 110 29 1 2290 503350622 503352906 0.000000e+00 3144.0
4 TraesCS1D01G278800 chr1B 93.794 1273 58 13 2287 3556 503352986 503354240 0.000000e+00 1893.0
5 TraesCS1D01G278800 chr1B 85.821 134 16 2 3584 3715 656449032 656449164 5.020000e-29 139.0
6 TraesCS1D01G278800 chr2A 95.333 150 5 2 3579 3728 669883903 669883756 1.730000e-58 237.0
7 TraesCS1D01G278800 chr5B 95.172 145 6 1 3584 3728 26301523 26301380 1.040000e-55 228.0
8 TraesCS1D01G278800 chr5B 91.837 147 11 1 3582 3728 681129639 681129494 1.760000e-48 204.0
9 TraesCS1D01G278800 chr4A 91.216 148 11 2 3582 3728 111106206 111106352 2.270000e-47 200.0
10 TraesCS1D01G278800 chr4A 90.323 62 4 2 1589 1649 627293166 627293226 3.090000e-11 80.5
11 TraesCS1D01G278800 chr4A 90.909 55 3 2 1596 1649 627006820 627006873 5.160000e-09 73.1
12 TraesCS1D01G278800 chr4A 90.909 55 3 2 1596 1649 627090322 627090375 5.160000e-09 73.1
13 TraesCS1D01G278800 chr4A 90.909 55 3 2 1596 1649 627169972 627170025 5.160000e-09 73.1
14 TraesCS1D01G278800 chr4A 90.741 54 4 1 1596 1649 627304375 627304427 1.860000e-08 71.3
15 TraesCS1D01G278800 chr7D 89.189 148 14 2 3581 3728 132156870 132156725 2.290000e-42 183.0
16 TraesCS1D01G278800 chr7D 89.404 151 8 6 3585 3728 478316233 478316084 2.290000e-42 183.0
17 TraesCS1D01G278800 chr6A 85.517 145 19 2 3584 3728 9571419 9571277 2.320000e-32 150.0
18 TraesCS1D01G278800 chr6B 96.721 61 2 0 3668 3728 696871908 696871968 6.590000e-18 102.0
19 TraesCS1D01G278800 chrUn 90.909 55 3 2 1596 1649 387318649 387318702 5.160000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G278800 chr1D 376620110 376623837 3727 False 6885.0 6885 100.0000 1 3728 1 chr1D.!!$F1 3727
1 TraesCS1D01G278800 chr1A 476907958 476911772 3814 False 2442.0 4619 87.3940 1 3584 2 chr1A.!!$F1 3583
2 TraesCS1D01G278800 chr1B 503350622 503354240 3618 False 2518.5 3144 92.7125 1 3556 2 chr1B.!!$F2 3555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 103 0.383949 GCTTGCCAGTTTGGAAACGA 59.616 50.0 0.00 0.0 40.96 3.85 F
186 197 0.951558 AATTTTTCACAGCGAGCCGT 59.048 45.0 0.00 0.0 0.00 5.68 F
1934 2225 0.256464 TCTCTCTCTCTTCCCGGGAC 59.744 60.0 26.87 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2225 1.066605 GCAGCATATCCCACTTGCAAG 59.933 52.381 24.84 24.84 38.84 4.01 R
2026 2317 4.003648 AGCTTTTCCAACCTCAGAATACG 58.996 43.478 0.00 0.00 0.00 3.06 R
3607 4009 0.178068 TTTCTATGGAGCAGCCGTCC 59.822 55.000 0.00 0.00 40.66 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.779696 TGCATGCACCAACTAATCATAGA 58.220 39.130 18.46 0.00 33.15 1.98
92 103 0.383949 GCTTGCCAGTTTGGAAACGA 59.616 50.000 0.00 0.00 40.96 3.85
97 108 1.524008 CCAGTTTGGAAACGAGGGGC 61.524 60.000 0.00 0.00 40.96 5.80
98 109 1.599797 AGTTTGGAAACGAGGGGCG 60.600 57.895 0.00 0.00 43.51 6.13
104 115 1.378119 GAAACGAGGGGCGGGAAAT 60.378 57.895 0.00 0.00 46.49 2.17
105 116 1.654023 GAAACGAGGGGCGGGAAATG 61.654 60.000 0.00 0.00 46.49 2.32
158 169 7.748691 TCACATGAAAAACAGATGAATGAGA 57.251 32.000 0.00 0.00 0.00 3.27
186 197 0.951558 AATTTTTCACAGCGAGCCGT 59.048 45.000 0.00 0.00 0.00 5.68
216 228 2.228822 CGGGAAATGAGGAAACACAAGG 59.771 50.000 0.00 0.00 33.61 3.61
247 261 3.539604 AGAGTAACTGGCATGATCTTGC 58.460 45.455 22.04 22.04 42.01 4.01
251 265 1.471119 ACTGGCATGATCTTGCAAGG 58.529 50.000 31.02 22.06 46.18 3.61
264 278 5.643379 TCTTGCAAGGGATAAACATGTTC 57.357 39.130 25.73 0.00 0.00 3.18
299 313 8.751302 TTCTTGCTTATTTTTATTCCGAAACC 57.249 30.769 0.00 0.00 0.00 3.27
306 320 8.973835 TTATTTTTATTCCGAAACCACATGTC 57.026 30.769 0.00 0.00 0.00 3.06
313 548 1.724623 CGAAACCACATGTCCTACGTG 59.275 52.381 0.00 0.00 40.80 4.49
345 580 8.450578 TGTTCACAGTGATTTCTAAGAACAAT 57.549 30.769 3.45 0.00 37.41 2.71
377 612 5.986135 ACGAAACAGGATAGCATAATGAGTC 59.014 40.000 0.00 0.00 0.00 3.36
386 621 1.871080 CATAATGAGTCCAGACGGGC 58.129 55.000 0.00 0.00 37.05 6.13
418 657 4.584874 CATAGGCGGATAAGAGAGAGAGA 58.415 47.826 0.00 0.00 0.00 3.10
419 658 3.140325 AGGCGGATAAGAGAGAGAGAG 57.860 52.381 0.00 0.00 0.00 3.20
420 659 2.708861 AGGCGGATAAGAGAGAGAGAGA 59.291 50.000 0.00 0.00 0.00 3.10
421 660 3.074412 GGCGGATAAGAGAGAGAGAGAG 58.926 54.545 0.00 0.00 0.00 3.20
422 661 3.244422 GGCGGATAAGAGAGAGAGAGAGA 60.244 52.174 0.00 0.00 0.00 3.10
423 662 3.997021 GCGGATAAGAGAGAGAGAGAGAG 59.003 52.174 0.00 0.00 0.00 3.20
424 663 4.262463 GCGGATAAGAGAGAGAGAGAGAGA 60.262 50.000 0.00 0.00 0.00 3.10
425 664 5.473931 CGGATAAGAGAGAGAGAGAGAGAG 58.526 50.000 0.00 0.00 0.00 3.20
830 1092 4.934602 GCTATGATCTTGATGGTTCCTAGC 59.065 45.833 0.00 0.00 0.00 3.42
846 1108 2.154462 CTAGCACACCTTTTCCCTGTG 58.846 52.381 0.00 0.00 38.68 3.66
866 1128 2.223144 TGAAATTGAAGCGTTCTCACCG 59.777 45.455 0.00 0.00 0.00 4.94
876 1138 1.469940 CGTTCTCACCGGAATCTCCTG 60.470 57.143 9.46 0.00 33.30 3.86
885 1147 1.743996 GGAATCTCCTGCGCTTTCTT 58.256 50.000 9.73 0.00 32.53 2.52
1114 1376 2.954611 GGAGACGGCTTTGGCAAC 59.045 61.111 0.00 0.00 40.87 4.17
1181 1444 6.480763 TGATTGATGTTTCTTAGCTACCCAA 58.519 36.000 0.00 0.00 0.00 4.12
1263 1526 5.826737 AGTCCATAGGAGCTGATTTTTCATG 59.173 40.000 0.00 0.00 29.39 3.07
1265 1528 6.096001 GTCCATAGGAGCTGATTTTTCATGTT 59.904 38.462 0.00 0.00 29.39 2.71
1266 1529 6.095860 TCCATAGGAGCTGATTTTTCATGTTG 59.904 38.462 0.00 0.00 0.00 3.33
1267 1530 4.184079 AGGAGCTGATTTTTCATGTTGC 57.816 40.909 0.00 0.00 0.00 4.17
1269 1532 3.924686 GGAGCTGATTTTTCATGTTGCAG 59.075 43.478 0.00 0.00 0.00 4.41
1270 1533 4.553323 GAGCTGATTTTTCATGTTGCAGT 58.447 39.130 0.00 0.00 0.00 4.40
1271 1534 4.952460 AGCTGATTTTTCATGTTGCAGTT 58.048 34.783 0.00 0.00 0.00 3.16
1272 1535 4.986659 AGCTGATTTTTCATGTTGCAGTTC 59.013 37.500 0.00 0.00 0.00 3.01
1273 1536 4.151157 GCTGATTTTTCATGTTGCAGTTCC 59.849 41.667 0.00 0.00 0.00 3.62
1274 1537 5.534207 TGATTTTTCATGTTGCAGTTCCT 57.466 34.783 0.00 0.00 0.00 3.36
1275 1538 5.916318 TGATTTTTCATGTTGCAGTTCCTT 58.084 33.333 0.00 0.00 0.00 3.36
1276 1539 5.984926 TGATTTTTCATGTTGCAGTTCCTTC 59.015 36.000 0.00 0.00 0.00 3.46
1277 1540 5.596836 TTTTTCATGTTGCAGTTCCTTCT 57.403 34.783 0.00 0.00 0.00 2.85
1278 1541 4.572985 TTTCATGTTGCAGTTCCTTCTG 57.427 40.909 0.00 0.00 38.35 3.02
1328 1591 4.896482 AGAACAGATTAAGCCCGAGATACT 59.104 41.667 0.00 0.00 0.00 2.12
1339 1602 5.250200 AGCCCGAGATACTCTATCAACTAG 58.750 45.833 0.00 0.00 37.65 2.57
1356 1619 5.425217 TCAACTAGGCCATAGATGTTTCTCA 59.575 40.000 5.01 0.00 36.09 3.27
1357 1620 5.283457 ACTAGGCCATAGATGTTTCTCAC 57.717 43.478 5.01 0.00 35.30 3.51
1398 1661 8.223100 GCAATGCCTTTCTAAAATGTAACTTTG 58.777 33.333 0.00 0.00 0.00 2.77
1703 1972 1.332377 GCGTGCATTCTAATCGACTGC 60.332 52.381 0.00 0.00 45.53 4.40
1898 2167 2.026641 CCTGGCAATGGAAGGTACATG 58.973 52.381 0.00 0.00 0.00 3.21
1933 2224 1.000496 TTCTCTCTCTCTTCCCGGGA 59.000 55.000 22.63 22.63 0.00 5.14
1934 2225 0.256464 TCTCTCTCTCTTCCCGGGAC 59.744 60.000 26.87 0.00 0.00 4.46
1945 2236 2.672996 CCGGGACTTGCAAGTGGG 60.673 66.667 35.67 26.73 39.88 4.61
2019 2310 5.523916 CGTGTATGTAAAATCCTCCTTCTGG 59.476 44.000 0.00 0.00 0.00 3.86
2026 2317 0.915364 ATCCTCCTTCTGGGCAGAAC 59.085 55.000 0.00 0.00 42.06 3.01
2122 2413 3.058293 TCGCACTCATCAAAATTGGACAC 60.058 43.478 0.00 0.00 0.00 3.67
2179 2470 2.348472 AGGTTTGACAAGGATCTCCCA 58.652 47.619 0.00 0.00 37.41 4.37
2286 2578 7.306167 CGATTCACAAACACAAAGATTGAAAGG 60.306 37.037 0.00 0.00 34.43 3.11
2305 2681 1.838077 GGTACCACTAGCATTGGGTCT 59.162 52.381 7.15 0.00 38.59 3.85
2527 2903 0.504384 CAGTCTGCAGTTTCGTCACG 59.496 55.000 14.67 0.00 0.00 4.35
2553 2929 7.170998 GTCAGTTGGGGTAAGTATTCATTATCG 59.829 40.741 0.00 0.00 0.00 2.92
2729 3105 0.595095 CAGAAGCCCAGCAACTGAAC 59.405 55.000 0.00 0.00 36.62 3.18
2738 3114 1.002033 CAGCAACTGAACTCCTGCAAC 60.002 52.381 0.00 0.00 37.26 4.17
2741 3117 2.099756 GCAACTGAACTCCTGCAACTTT 59.900 45.455 0.00 0.00 34.87 2.66
2744 3120 5.507985 GCAACTGAACTCCTGCAACTTTATT 60.508 40.000 0.00 0.00 34.87 1.40
2745 3121 6.507023 CAACTGAACTCCTGCAACTTTATTT 58.493 36.000 0.00 0.00 0.00 1.40
2746 3122 6.076981 ACTGAACTCCTGCAACTTTATTTG 57.923 37.500 0.00 0.00 0.00 2.32
2748 3124 4.280677 TGAACTCCTGCAACTTTATTTGGG 59.719 41.667 0.00 0.00 0.00 4.12
2750 3126 4.479158 ACTCCTGCAACTTTATTTGGGAA 58.521 39.130 0.00 0.00 0.00 3.97
2756 3132 3.554752 GCAACTTTATTTGGGAAGCAGCA 60.555 43.478 0.00 0.00 0.00 4.41
2757 3133 3.942130 ACTTTATTTGGGAAGCAGCAC 57.058 42.857 0.00 0.00 0.00 4.40
2898 3274 8.100791 AGAGTTTTTGGTAATACATAGTGCTCA 58.899 33.333 0.00 0.00 0.00 4.26
3047 3424 5.220681 GGTTATCTGAAGAATTTCTGCCGAC 60.221 44.000 0.00 0.00 34.31 4.79
3052 3429 3.718480 GAATTTCTGCCGACGCGCC 62.718 63.158 5.73 0.00 38.08 6.53
3091 3468 9.712359 GTTCTTGAACCGAACAATATTATTACC 57.288 33.333 2.31 0.00 40.27 2.85
3105 3482 5.947228 ATTATTACCGCCAACATGATCAG 57.053 39.130 0.00 0.00 0.00 2.90
3117 3514 4.356405 ACATGATCAGGAACAGTTCACA 57.644 40.909 15.42 7.11 0.00 3.58
3127 3524 5.065859 CAGGAACAGTTCACAAACACATACA 59.934 40.000 15.36 0.00 37.88 2.29
3281 3678 4.837860 ACTCTTGTCCAACTCTGAATCTCT 59.162 41.667 0.00 0.00 0.00 3.10
3288 3685 3.204526 CAACTCTGAATCTCTGATGGCC 58.795 50.000 0.00 0.00 0.00 5.36
3348 3749 2.181975 TGTCATGCATCTGGTCTGAGA 58.818 47.619 0.00 0.00 0.00 3.27
3429 3830 1.796459 GTGCGCGGAAAAGTTTAGAGA 59.204 47.619 8.83 0.00 0.00 3.10
3430 3831 2.222445 GTGCGCGGAAAAGTTTAGAGAA 59.778 45.455 8.83 0.00 0.00 2.87
3431 3832 2.222445 TGCGCGGAAAAGTTTAGAGAAC 59.778 45.455 8.83 0.00 0.00 3.01
3432 3833 2.222445 GCGCGGAAAAGTTTAGAGAACA 59.778 45.455 8.83 0.00 0.00 3.18
3433 3834 3.664537 GCGCGGAAAAGTTTAGAGAACAG 60.665 47.826 8.83 0.00 0.00 3.16
3483 3885 2.807045 GGTCGCGTCAGCACTCAG 60.807 66.667 5.77 0.00 45.49 3.35
3578 3980 3.588842 AGAATCATGTGGACCAAAGGAGA 59.411 43.478 5.09 0.00 0.00 3.71
3584 3986 2.637872 TGTGGACCAAAGGAGACCTAAG 59.362 50.000 0.00 0.00 31.13 2.18
3585 3987 2.027100 GTGGACCAAAGGAGACCTAAGG 60.027 54.545 0.00 0.00 34.92 2.69
3586 3988 1.560146 GGACCAAAGGAGACCTAAGGG 59.440 57.143 11.29 6.94 33.62 3.95
3587 3989 0.992695 ACCAAAGGAGACCTAAGGGC 59.007 55.000 11.29 0.00 33.62 5.19
3588 3990 0.991920 CCAAAGGAGACCTAAGGGCA 59.008 55.000 0.00 0.00 35.63 5.36
3589 3991 1.566231 CCAAAGGAGACCTAAGGGCAT 59.434 52.381 0.00 0.00 35.63 4.40
3590 3992 2.648059 CAAAGGAGACCTAAGGGCATG 58.352 52.381 0.00 0.00 35.63 4.06
3591 3993 1.216990 AAGGAGACCTAAGGGCATGG 58.783 55.000 0.00 0.00 35.63 3.66
3592 3994 1.149401 GGAGACCTAAGGGCATGGC 59.851 63.158 11.56 11.56 35.63 4.40
3605 4007 2.587080 CATGGCCAATGCTCCAAGT 58.413 52.632 10.96 0.00 35.75 3.16
3606 4008 0.899720 CATGGCCAATGCTCCAAGTT 59.100 50.000 10.96 0.00 35.75 2.66
3607 4009 0.899720 ATGGCCAATGCTCCAAGTTG 59.100 50.000 10.96 0.00 35.75 3.16
3608 4010 1.186917 TGGCCAATGCTCCAAGTTGG 61.187 55.000 16.36 16.36 44.06 3.77
3609 4011 0.899717 GGCCAATGCTCCAAGTTGGA 60.900 55.000 23.23 23.23 45.98 3.53
3610 4012 0.244721 GCCAATGCTCCAAGTTGGAC 59.755 55.000 21.05 16.94 42.67 4.02
3611 4013 0.523072 CCAATGCTCCAAGTTGGACG 59.477 55.000 21.05 16.75 42.67 4.79
3612 4014 0.523072 CAATGCTCCAAGTTGGACGG 59.477 55.000 21.05 13.23 42.67 4.79
3613 4015 1.244019 AATGCTCCAAGTTGGACGGC 61.244 55.000 21.05 22.21 42.67 5.68
3614 4016 2.032681 GCTCCAAGTTGGACGGCT 59.967 61.111 21.05 0.00 42.67 5.52
3615 4017 2.328099 GCTCCAAGTTGGACGGCTG 61.328 63.158 21.05 11.76 42.67 4.85
3616 4018 2.281484 TCCAAGTTGGACGGCTGC 60.281 61.111 21.05 0.00 42.67 5.25
3617 4019 2.281761 CCAAGTTGGACGGCTGCT 60.282 61.111 17.60 0.00 40.96 4.24
3618 4020 2.328099 CCAAGTTGGACGGCTGCTC 61.328 63.158 17.60 0.00 40.96 4.26
3619 4021 2.032681 AAGTTGGACGGCTGCTCC 59.967 61.111 0.00 0.00 0.00 4.70
3620 4022 2.818169 AAGTTGGACGGCTGCTCCA 61.818 57.895 6.53 6.53 35.91 3.86
3621 4023 2.045926 GTTGGACGGCTGCTCCAT 60.046 61.111 10.95 0.00 37.65 3.41
3622 4024 1.220749 GTTGGACGGCTGCTCCATA 59.779 57.895 10.95 1.34 37.65 2.74
3623 4025 0.811616 GTTGGACGGCTGCTCCATAG 60.812 60.000 10.95 0.00 37.65 2.23
3624 4026 0.975556 TTGGACGGCTGCTCCATAGA 60.976 55.000 10.95 0.00 37.65 1.98
3625 4027 0.975556 TGGACGGCTGCTCCATAGAA 60.976 55.000 6.53 0.00 32.52 2.10
3626 4028 0.178068 GGACGGCTGCTCCATAGAAA 59.822 55.000 0.00 0.00 34.01 2.52
3627 4029 1.406887 GGACGGCTGCTCCATAGAAAA 60.407 52.381 0.00 0.00 34.01 2.29
3628 4030 2.356135 GACGGCTGCTCCATAGAAAAA 58.644 47.619 0.00 0.00 34.01 1.94
3629 4031 2.352960 GACGGCTGCTCCATAGAAAAAG 59.647 50.000 0.00 0.00 34.01 2.27
3630 4032 1.064654 CGGCTGCTCCATAGAAAAAGC 59.935 52.381 0.00 0.00 35.31 3.51
3631 4033 2.373224 GGCTGCTCCATAGAAAAAGCT 58.627 47.619 0.00 0.00 35.76 3.74
3632 4034 2.098770 GGCTGCTCCATAGAAAAAGCTG 59.901 50.000 0.00 0.00 35.76 4.24
3633 4035 3.012518 GCTGCTCCATAGAAAAAGCTGA 58.987 45.455 4.56 0.00 36.23 4.26
3634 4036 3.631227 GCTGCTCCATAGAAAAAGCTGAT 59.369 43.478 4.56 0.00 36.23 2.90
3635 4037 4.497674 GCTGCTCCATAGAAAAAGCTGATG 60.498 45.833 4.56 0.00 36.23 3.07
3636 4038 4.847198 TGCTCCATAGAAAAAGCTGATGA 58.153 39.130 0.00 0.00 35.76 2.92
3637 4039 5.443283 TGCTCCATAGAAAAAGCTGATGAT 58.557 37.500 0.00 0.00 35.76 2.45
3638 4040 6.594744 TGCTCCATAGAAAAAGCTGATGATA 58.405 36.000 0.00 0.00 35.76 2.15
3639 4041 7.229308 TGCTCCATAGAAAAAGCTGATGATAT 58.771 34.615 0.00 0.00 35.76 1.63
3640 4042 7.174426 TGCTCCATAGAAAAAGCTGATGATATG 59.826 37.037 0.00 0.00 35.76 1.78
3641 4043 7.361885 GCTCCATAGAAAAAGCTGATGATATGG 60.362 40.741 16.12 16.12 39.72 2.74
3642 4044 7.748677 TCCATAGAAAAAGCTGATGATATGGA 58.251 34.615 18.99 18.99 43.06 3.41
3643 4045 8.219868 TCCATAGAAAAAGCTGATGATATGGAA 58.780 33.333 19.94 9.71 42.59 3.53
3644 4046 8.512956 CCATAGAAAAAGCTGATGATATGGAAG 58.487 37.037 16.83 0.00 40.45 3.46
3645 4047 9.281371 CATAGAAAAAGCTGATGATATGGAAGA 57.719 33.333 0.00 0.00 0.00 2.87
3646 4048 7.804843 AGAAAAAGCTGATGATATGGAAGAG 57.195 36.000 0.00 0.00 0.00 2.85
3647 4049 7.571919 AGAAAAAGCTGATGATATGGAAGAGA 58.428 34.615 0.00 0.00 0.00 3.10
3648 4050 7.716123 AGAAAAAGCTGATGATATGGAAGAGAG 59.284 37.037 0.00 0.00 0.00 3.20
3649 4051 6.744175 AAAGCTGATGATATGGAAGAGAGA 57.256 37.500 0.00 0.00 0.00 3.10
3650 4052 5.988310 AGCTGATGATATGGAAGAGAGAG 57.012 43.478 0.00 0.00 0.00 3.20
3651 4053 4.773674 AGCTGATGATATGGAAGAGAGAGG 59.226 45.833 0.00 0.00 0.00 3.69
3652 4054 4.081531 GCTGATGATATGGAAGAGAGAGGG 60.082 50.000 0.00 0.00 0.00 4.30
3653 4055 4.423913 TGATGATATGGAAGAGAGAGGGG 58.576 47.826 0.00 0.00 0.00 4.79
3654 4056 3.266477 TGATATGGAAGAGAGAGGGGG 57.734 52.381 0.00 0.00 0.00 5.40
3682 4084 5.467902 GCTAGTGCTTGAAGAGAAGAATG 57.532 43.478 0.00 0.00 36.03 2.67
3683 4085 4.332268 GCTAGTGCTTGAAGAGAAGAATGG 59.668 45.833 0.00 0.00 36.03 3.16
3684 4086 3.683802 AGTGCTTGAAGAGAAGAATGGG 58.316 45.455 0.00 0.00 0.00 4.00
3685 4087 3.328931 AGTGCTTGAAGAGAAGAATGGGA 59.671 43.478 0.00 0.00 0.00 4.37
3686 4088 4.018597 AGTGCTTGAAGAGAAGAATGGGAT 60.019 41.667 0.00 0.00 0.00 3.85
3687 4089 4.335037 GTGCTTGAAGAGAAGAATGGGATC 59.665 45.833 0.00 0.00 0.00 3.36
3688 4090 4.226846 TGCTTGAAGAGAAGAATGGGATCT 59.773 41.667 0.00 0.00 0.00 2.75
3689 4091 5.192176 GCTTGAAGAGAAGAATGGGATCTT 58.808 41.667 0.00 0.00 42.24 2.40
3690 4092 5.066246 GCTTGAAGAGAAGAATGGGATCTTG 59.934 44.000 0.00 0.00 39.70 3.02
3691 4093 4.521146 TGAAGAGAAGAATGGGATCTTGC 58.479 43.478 0.00 0.00 39.70 4.01
3692 4094 4.019051 TGAAGAGAAGAATGGGATCTTGCA 60.019 41.667 0.00 0.00 39.70 4.08
3693 4095 4.153673 AGAGAAGAATGGGATCTTGCAG 57.846 45.455 0.00 0.00 39.70 4.41
3694 4096 3.779183 AGAGAAGAATGGGATCTTGCAGA 59.221 43.478 0.00 0.00 39.70 4.26
3695 4097 4.128643 GAGAAGAATGGGATCTTGCAGAG 58.871 47.826 0.00 0.00 39.70 3.35
3696 4098 3.117963 AGAAGAATGGGATCTTGCAGAGG 60.118 47.826 0.00 0.00 39.70 3.69
3697 4099 2.485659 AGAATGGGATCTTGCAGAGGA 58.514 47.619 0.00 0.00 0.00 3.71
3698 4100 2.438763 AGAATGGGATCTTGCAGAGGAG 59.561 50.000 0.00 0.00 0.00 3.69
3699 4101 1.138568 ATGGGATCTTGCAGAGGAGG 58.861 55.000 0.00 0.00 0.00 4.30
3700 4102 1.148048 GGGATCTTGCAGAGGAGGC 59.852 63.158 0.00 0.00 0.00 4.70
3701 4103 1.148048 GGATCTTGCAGAGGAGGCC 59.852 63.158 0.00 0.00 0.00 5.19
3702 4104 1.227497 GATCTTGCAGAGGAGGCCG 60.227 63.158 0.00 0.00 0.00 6.13
3703 4105 2.657102 GATCTTGCAGAGGAGGCCGG 62.657 65.000 0.00 0.00 0.00 6.13
3704 4106 3.710722 CTTGCAGAGGAGGCCGGT 61.711 66.667 1.90 0.00 0.00 5.28
3705 4107 3.965539 CTTGCAGAGGAGGCCGGTG 62.966 68.421 1.90 0.00 0.00 4.94
3708 4110 3.710722 CAGAGGAGGCCGGTGCTT 61.711 66.667 1.90 0.00 37.74 3.91
3709 4111 3.394836 AGAGGAGGCCGGTGCTTC 61.395 66.667 1.90 0.00 42.54 3.86
3710 4112 3.706373 GAGGAGGCCGGTGCTTCA 61.706 66.667 1.90 0.00 44.90 3.02
3711 4113 3.011517 AGGAGGCCGGTGCTTCAT 61.012 61.111 1.90 0.00 44.90 2.57
3712 4114 2.514824 GGAGGCCGGTGCTTCATC 60.515 66.667 1.90 0.00 44.90 2.92
3713 4115 2.514824 GAGGCCGGTGCTTCATCC 60.515 66.667 1.90 0.00 42.78 3.51
3714 4116 3.329542 GAGGCCGGTGCTTCATCCA 62.330 63.158 1.90 0.00 42.78 3.41
3715 4117 2.361104 GGCCGGTGCTTCATCCAA 60.361 61.111 1.90 0.00 37.74 3.53
3716 4118 1.976474 GGCCGGTGCTTCATCCAAA 60.976 57.895 1.90 0.00 37.74 3.28
3717 4119 1.531739 GGCCGGTGCTTCATCCAAAA 61.532 55.000 1.90 0.00 37.74 2.44
3718 4120 0.316841 GCCGGTGCTTCATCCAAAAA 59.683 50.000 1.90 0.00 33.53 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.331214 CCGATGCTTATGGCCCAATT 58.669 50.000 0.00 0.00 40.92 2.32
67 68 1.394266 CCAAACTGGCAAGCACCACT 61.394 55.000 0.00 0.00 35.33 4.00
71 72 1.570813 GTTTCCAAACTGGCAAGCAC 58.429 50.000 0.00 0.00 37.47 4.40
92 103 0.178947 TTTTGTCATTTCCCGCCCCT 60.179 50.000 0.00 0.00 0.00 4.79
126 137 9.119418 TCATCTGTTTTTCATGTGAACTTCTAA 57.881 29.630 0.00 0.00 33.13 2.10
158 169 6.074356 GCTCGCTGTGAAAAATTATGTGTTTT 60.074 34.615 0.00 0.00 0.00 2.43
169 180 0.736053 AAACGGCTCGCTGTGAAAAA 59.264 45.000 3.83 0.00 35.44 1.94
186 197 1.807742 CCTCATTTCCCGCGTTACAAA 59.192 47.619 4.92 0.00 0.00 2.83
232 244 1.471119 CCTTGCAAGATCATGCCAGT 58.529 50.000 28.05 0.00 45.83 4.00
234 246 0.332293 TCCCTTGCAAGATCATGCCA 59.668 50.000 28.05 8.44 45.83 4.92
247 261 7.395190 TTGAGATGAACATGTTTATCCCTTG 57.605 36.000 29.63 0.00 36.56 3.61
293 307 1.724623 CACGTAGGACATGTGGTTTCG 59.275 52.381 1.15 4.33 40.02 3.46
294 308 3.034721 TCACGTAGGACATGTGGTTTC 57.965 47.619 1.15 0.00 43.32 2.78
299 313 6.662414 ACAATTATTCACGTAGGACATGTG 57.338 37.500 1.15 0.00 44.31 3.21
345 580 9.602568 TTATGCTATCCTGTTTCGTGTAATTTA 57.397 29.630 0.00 0.00 0.00 1.40
377 612 4.802051 CATGTGGGGCCCGTCTGG 62.802 72.222 19.83 0.58 37.09 3.86
386 621 2.595463 CGCCTATGCCATGTGGGG 60.595 66.667 0.54 0.00 37.04 4.96
418 657 1.309499 CGAGAACGTGGGCTCTCTCT 61.309 60.000 11.99 0.00 36.69 3.10
419 658 1.137825 CGAGAACGTGGGCTCTCTC 59.862 63.158 11.99 7.77 36.69 3.20
420 659 1.303398 TCGAGAACGTGGGCTCTCT 60.303 57.895 11.99 0.00 36.69 3.10
421 660 1.153997 GTCGAGAACGTGGGCTCTC 60.154 63.158 5.12 5.12 40.69 3.20
422 661 2.637383 GGTCGAGAACGTGGGCTCT 61.637 63.158 10.41 0.01 40.69 4.09
423 662 2.126031 GGTCGAGAACGTGGGCTC 60.126 66.667 0.00 0.00 40.69 4.70
424 663 2.915659 TGGTCGAGAACGTGGGCT 60.916 61.111 0.00 0.00 40.69 5.19
425 664 2.737376 GTGGTCGAGAACGTGGGC 60.737 66.667 0.00 0.00 40.69 5.36
605 847 1.901085 CCCGGTTCAGAGGAAGAGG 59.099 63.158 0.00 0.00 32.62 3.69
679 921 0.804364 TTGCTGGACTTTGCTATGCG 59.196 50.000 0.00 0.00 0.00 4.73
688 930 4.368391 CTGCTCGTTGCTGGACTT 57.632 55.556 5.00 0.00 43.37 3.01
743 985 2.301577 AGCAATTAGACAGACGGAGC 57.698 50.000 0.00 0.00 0.00 4.70
791 1047 3.131223 TCATAGCAAGGCAGAGTACAGTC 59.869 47.826 0.00 0.00 0.00 3.51
846 1108 2.412847 CCGGTGAGAACGCTTCAATTTC 60.413 50.000 0.00 0.00 0.00 2.17
866 1128 1.668237 GAAGAAAGCGCAGGAGATTCC 59.332 52.381 11.47 0.00 36.58 3.01
876 1138 0.951558 TGAAACCCTGAAGAAAGCGC 59.048 50.000 0.00 0.00 0.00 5.92
885 1147 2.196595 CTCCCCTACATGAAACCCTGA 58.803 52.381 0.00 0.00 0.00 3.86
1092 1354 2.033194 CCAAAGCCGTCTCCGTTCC 61.033 63.158 0.00 0.00 0.00 3.62
1114 1376 1.942776 AAAAGGGGAGCATCAAAGGG 58.057 50.000 0.00 0.00 36.25 3.95
1181 1444 4.555348 TGCCGTTAACATCTTCGTTTTT 57.445 36.364 6.39 0.00 0.00 1.94
1187 1450 4.852609 ACGTTATGCCGTTAACATCTTC 57.147 40.909 6.39 0.00 37.96 2.87
1243 1506 5.747197 GCAACATGAAAAATCAGCTCCTATG 59.253 40.000 0.00 0.00 0.00 2.23
1267 1530 6.974965 AGAATAAAAACAGCAGAAGGAACTG 58.025 36.000 0.00 0.00 40.86 3.16
1269 1532 6.382608 GGAGAATAAAAACAGCAGAAGGAAC 58.617 40.000 0.00 0.00 0.00 3.62
1270 1533 5.181245 CGGAGAATAAAAACAGCAGAAGGAA 59.819 40.000 0.00 0.00 0.00 3.36
1271 1534 4.695455 CGGAGAATAAAAACAGCAGAAGGA 59.305 41.667 0.00 0.00 0.00 3.36
1272 1535 4.695455 TCGGAGAATAAAAACAGCAGAAGG 59.305 41.667 0.00 0.00 0.00 3.46
1273 1536 5.862924 TCGGAGAATAAAAACAGCAGAAG 57.137 39.130 0.00 0.00 0.00 2.85
1274 1537 6.817765 ATTCGGAGAATAAAAACAGCAGAA 57.182 33.333 0.00 0.00 45.90 3.02
1275 1538 6.817765 AATTCGGAGAATAAAAACAGCAGA 57.182 33.333 0.00 0.00 45.90 4.26
1276 1539 7.272084 CAGAAATTCGGAGAATAAAAACAGCAG 59.728 37.037 0.00 0.00 45.90 4.24
1277 1540 7.040755 TCAGAAATTCGGAGAATAAAAACAGCA 60.041 33.333 0.00 0.00 45.90 4.41
1278 1541 7.305474 TCAGAAATTCGGAGAATAAAAACAGC 58.695 34.615 0.00 0.00 45.90 4.40
1287 1550 7.786030 TCTGTTCTATCAGAAATTCGGAGAAT 58.214 34.615 1.98 0.00 40.81 2.40
1288 1551 7.170393 TCTGTTCTATCAGAAATTCGGAGAA 57.830 36.000 1.98 0.00 40.81 2.87
1328 1591 7.510685 AGAAACATCTATGGCCTAGTTGATAGA 59.489 37.037 19.04 15.11 33.26 1.98
1339 1602 3.118261 TCAGGTGAGAAACATCTATGGCC 60.118 47.826 0.00 0.00 37.96 5.36
1385 1648 8.590204 CCTACCAATAACCCAAAGTTACATTTT 58.410 33.333 0.00 0.00 43.66 1.82
1398 1661 3.054655 TGAAGCTCACCTACCAATAACCC 60.055 47.826 0.00 0.00 0.00 4.11
1665 1928 5.007430 TGCACGCTACTGTCTTCTATACTAC 59.993 44.000 0.00 0.00 0.00 2.73
1703 1972 5.408604 AGTTTCCAGCTAATGTAACTTGTCG 59.591 40.000 0.00 0.00 31.45 4.35
1898 2167 4.824537 AGAGAGAAAGAAAAGCTTTGGTCC 59.175 41.667 13.54 2.92 46.52 4.46
1933 2224 2.372264 CAGCATATCCCACTTGCAAGT 58.628 47.619 26.36 26.36 40.60 3.16
1934 2225 1.066605 GCAGCATATCCCACTTGCAAG 59.933 52.381 24.84 24.84 38.84 4.01
1945 2236 4.500375 GGGAATCAAAACCAGCAGCATATC 60.500 45.833 0.00 0.00 0.00 1.63
2026 2317 4.003648 AGCTTTTCCAACCTCAGAATACG 58.996 43.478 0.00 0.00 0.00 3.06
2122 2413 6.682423 TCACAACAAATGCATACATCCTAG 57.318 37.500 0.00 0.00 34.62 3.02
2286 2578 3.055385 TCAAGACCCAATGCTAGTGGTAC 60.055 47.826 0.00 0.00 34.01 3.34
2305 2681 3.071457 TGTGGAGCATCTTCAGAAGTCAA 59.929 43.478 10.09 0.00 33.73 3.18
2404 2780 1.293924 CGGCCAAGCACAAGATAGAG 58.706 55.000 2.24 0.00 0.00 2.43
2527 2903 7.170998 CGATAATGAATACTTACCCCAACTGAC 59.829 40.741 0.00 0.00 0.00 3.51
2553 2929 1.804372 CGTGCTAGGATTGACAGCTCC 60.804 57.143 0.00 0.00 36.26 4.70
2729 3105 4.619160 GCTTCCCAAATAAAGTTGCAGGAG 60.619 45.833 0.00 0.00 0.00 3.69
2738 3114 2.094026 GGGTGCTGCTTCCCAAATAAAG 60.094 50.000 21.90 0.00 42.95 1.85
2741 3117 0.324275 GGGGTGCTGCTTCCCAAATA 60.324 55.000 25.68 0.00 45.06 1.40
2744 3120 4.659172 CGGGGTGCTGCTTCCCAA 62.659 66.667 25.68 0.00 45.06 4.12
2748 3124 0.393808 TTATTCCGGGGTGCTGCTTC 60.394 55.000 0.00 0.00 0.00 3.86
2750 3126 1.224592 CTTATTCCGGGGTGCTGCT 59.775 57.895 0.00 0.00 0.00 4.24
2756 3132 3.023832 CAAAGCATTCTTATTCCGGGGT 58.976 45.455 0.00 0.00 31.02 4.95
2757 3133 3.287222 TCAAAGCATTCTTATTCCGGGG 58.713 45.455 0.00 0.00 31.02 5.73
2898 3274 5.862924 ACACAGATGATTCGACGAATTTT 57.137 34.783 23.06 13.93 31.89 1.82
3052 3429 1.939934 TCAAGAACTGCCACGACAAAG 59.060 47.619 0.00 0.00 0.00 2.77
3065 3442 9.712359 GGTAATAATATTGTTCGGTTCAAGAAC 57.288 33.333 0.14 4.39 45.85 3.01
3091 3468 1.399440 CTGTTCCTGATCATGTTGGCG 59.601 52.381 0.00 0.00 0.00 5.69
3105 3482 5.493133 TGTATGTGTTTGTGAACTGTTCC 57.507 39.130 17.26 9.53 36.70 3.62
3117 3514 5.984926 CAGCATTTGGACTTTGTATGTGTTT 59.015 36.000 0.00 0.00 0.00 2.83
3127 3524 4.546829 AATCATGCAGCATTTGGACTTT 57.453 36.364 4.69 0.00 0.00 2.66
3252 3649 3.320541 CAGAGTTGGACAAGAGTCAGAGT 59.679 47.826 0.00 0.00 46.80 3.24
3281 3678 3.092511 GGCTGGGAGAGGCCATCA 61.093 66.667 5.01 0.00 46.84 3.07
3288 3685 0.959372 CTGTTTGCTGGCTGGGAGAG 60.959 60.000 0.00 0.00 0.00 3.20
3341 3742 3.153919 ACAGTCCTTCTCAGTCTCAGAC 58.846 50.000 0.00 0.00 0.00 3.51
3429 3830 5.562696 CGCCTTTACATCATTGTGTTCTGTT 60.563 40.000 0.00 0.00 36.53 3.16
3430 3831 4.083324 CGCCTTTACATCATTGTGTTCTGT 60.083 41.667 0.00 0.00 36.53 3.41
3431 3832 4.083324 ACGCCTTTACATCATTGTGTTCTG 60.083 41.667 0.00 0.00 36.53 3.02
3432 3833 4.072131 ACGCCTTTACATCATTGTGTTCT 58.928 39.130 0.00 0.00 36.53 3.01
3433 3834 4.419522 ACGCCTTTACATCATTGTGTTC 57.580 40.909 0.00 0.00 36.53 3.18
3587 3989 0.899720 AACTTGGAGCATTGGCCATG 59.100 50.000 6.09 8.63 42.56 3.66
3588 3990 0.899720 CAACTTGGAGCATTGGCCAT 59.100 50.000 6.09 0.00 42.56 4.40
3589 3991 1.186917 CCAACTTGGAGCATTGGCCA 61.187 55.000 0.00 0.00 40.96 5.36
3590 3992 0.899717 TCCAACTTGGAGCATTGGCC 60.900 55.000 6.39 0.00 42.67 5.36
3591 3993 2.657297 TCCAACTTGGAGCATTGGC 58.343 52.632 6.39 0.00 42.67 4.52
3599 4001 2.281484 GCAGCCGTCCAACTTGGA 60.281 61.111 6.39 6.39 45.98 3.53
3600 4002 2.281761 AGCAGCCGTCCAACTTGG 60.282 61.111 0.74 0.74 39.43 3.61
3601 4003 2.328099 GGAGCAGCCGTCCAACTTG 61.328 63.158 0.00 0.00 33.84 3.16
3602 4004 2.032681 GGAGCAGCCGTCCAACTT 59.967 61.111 0.00 0.00 33.84 2.66
3603 4005 3.241530 TGGAGCAGCCGTCCAACT 61.242 61.111 0.75 0.00 41.32 3.16
3607 4009 0.178068 TTTCTATGGAGCAGCCGTCC 59.822 55.000 0.00 0.00 40.66 4.79
3608 4010 2.024176 TTTTCTATGGAGCAGCCGTC 57.976 50.000 0.00 0.00 40.66 4.79
3609 4011 2.359900 CTTTTTCTATGGAGCAGCCGT 58.640 47.619 0.00 0.00 40.66 5.68
3610 4012 1.064654 GCTTTTTCTATGGAGCAGCCG 59.935 52.381 0.00 0.00 40.66 5.52
3611 4013 2.098770 CAGCTTTTTCTATGGAGCAGCC 59.901 50.000 0.00 0.00 37.59 4.85
3612 4014 3.012518 TCAGCTTTTTCTATGGAGCAGC 58.987 45.455 0.00 0.00 37.59 5.25
3613 4015 4.880120 TCATCAGCTTTTTCTATGGAGCAG 59.120 41.667 0.00 0.00 37.59 4.24
3614 4016 4.847198 TCATCAGCTTTTTCTATGGAGCA 58.153 39.130 0.00 0.00 37.59 4.26
3615 4017 7.361885 CCATATCATCAGCTTTTTCTATGGAGC 60.362 40.741 12.82 0.00 37.58 4.70
3616 4018 7.881751 TCCATATCATCAGCTTTTTCTATGGAG 59.118 37.037 15.29 0.00 38.78 3.86
3617 4019 7.748677 TCCATATCATCAGCTTTTTCTATGGA 58.251 34.615 15.29 15.29 40.44 3.41
3618 4020 7.991084 TCCATATCATCAGCTTTTTCTATGG 57.009 36.000 12.24 12.24 37.01 2.74
3619 4021 9.281371 TCTTCCATATCATCAGCTTTTTCTATG 57.719 33.333 0.00 0.00 0.00 2.23
3620 4022 9.504708 CTCTTCCATATCATCAGCTTTTTCTAT 57.495 33.333 0.00 0.00 0.00 1.98
3621 4023 8.708378 TCTCTTCCATATCATCAGCTTTTTCTA 58.292 33.333 0.00 0.00 0.00 2.10
3622 4024 7.571919 TCTCTTCCATATCATCAGCTTTTTCT 58.428 34.615 0.00 0.00 0.00 2.52
3623 4025 7.714377 TCTCTCTTCCATATCATCAGCTTTTTC 59.286 37.037 0.00 0.00 0.00 2.29
3624 4026 7.571919 TCTCTCTTCCATATCATCAGCTTTTT 58.428 34.615 0.00 0.00 0.00 1.94
3625 4027 7.134362 TCTCTCTTCCATATCATCAGCTTTT 57.866 36.000 0.00 0.00 0.00 2.27
3626 4028 6.239657 CCTCTCTCTTCCATATCATCAGCTTT 60.240 42.308 0.00 0.00 0.00 3.51
3627 4029 5.246656 CCTCTCTCTTCCATATCATCAGCTT 59.753 44.000 0.00 0.00 0.00 3.74
3628 4030 4.773674 CCTCTCTCTTCCATATCATCAGCT 59.226 45.833 0.00 0.00 0.00 4.24
3629 4031 4.081531 CCCTCTCTCTTCCATATCATCAGC 60.082 50.000 0.00 0.00 0.00 4.26
3630 4032 4.467082 CCCCTCTCTCTTCCATATCATCAG 59.533 50.000 0.00 0.00 0.00 2.90
3631 4033 4.423913 CCCCTCTCTCTTCCATATCATCA 58.576 47.826 0.00 0.00 0.00 3.07
3632 4034 3.774216 CCCCCTCTCTCTTCCATATCATC 59.226 52.174 0.00 0.00 0.00 2.92
3633 4035 3.800924 CCCCCTCTCTCTTCCATATCAT 58.199 50.000 0.00 0.00 0.00 2.45
3634 4036 3.266477 CCCCCTCTCTCTTCCATATCA 57.734 52.381 0.00 0.00 0.00 2.15
3660 4062 4.332268 CCATTCTTCTCTTCAAGCACTAGC 59.668 45.833 0.00 0.00 42.56 3.42
3661 4063 4.874966 CCCATTCTTCTCTTCAAGCACTAG 59.125 45.833 0.00 0.00 0.00 2.57
3662 4064 4.532126 TCCCATTCTTCTCTTCAAGCACTA 59.468 41.667 0.00 0.00 0.00 2.74
3663 4065 3.328931 TCCCATTCTTCTCTTCAAGCACT 59.671 43.478 0.00 0.00 0.00 4.40
3664 4066 3.679389 TCCCATTCTTCTCTTCAAGCAC 58.321 45.455 0.00 0.00 0.00 4.40
3665 4067 4.226846 AGATCCCATTCTTCTCTTCAAGCA 59.773 41.667 0.00 0.00 0.00 3.91
3666 4068 4.779696 AGATCCCATTCTTCTCTTCAAGC 58.220 43.478 0.00 0.00 0.00 4.01
3667 4069 5.066246 GCAAGATCCCATTCTTCTCTTCAAG 59.934 44.000 0.00 0.00 33.69 3.02
3668 4070 4.946157 GCAAGATCCCATTCTTCTCTTCAA 59.054 41.667 0.00 0.00 33.69 2.69
3669 4071 4.019051 TGCAAGATCCCATTCTTCTCTTCA 60.019 41.667 0.00 0.00 33.69 3.02
3670 4072 4.521146 TGCAAGATCCCATTCTTCTCTTC 58.479 43.478 0.00 0.00 33.69 2.87
3671 4073 4.226846 TCTGCAAGATCCCATTCTTCTCTT 59.773 41.667 0.00 0.00 38.67 2.85
3672 4074 3.779183 TCTGCAAGATCCCATTCTTCTCT 59.221 43.478 0.00 0.00 38.67 3.10
3673 4075 4.128643 CTCTGCAAGATCCCATTCTTCTC 58.871 47.826 0.00 0.00 45.62 2.87
3674 4076 3.117963 CCTCTGCAAGATCCCATTCTTCT 60.118 47.826 0.00 0.00 45.62 2.85
3675 4077 3.118112 TCCTCTGCAAGATCCCATTCTTC 60.118 47.826 0.00 0.00 45.62 2.87
3676 4078 2.848694 TCCTCTGCAAGATCCCATTCTT 59.151 45.455 0.00 0.00 45.62 2.52
3677 4079 2.438763 CTCCTCTGCAAGATCCCATTCT 59.561 50.000 0.00 0.00 45.62 2.40
3678 4080 2.486907 CCTCCTCTGCAAGATCCCATTC 60.487 54.545 0.00 0.00 45.62 2.67
3679 4081 1.493871 CCTCCTCTGCAAGATCCCATT 59.506 52.381 0.00 0.00 45.62 3.16
3680 4082 1.138568 CCTCCTCTGCAAGATCCCAT 58.861 55.000 0.00 0.00 45.62 4.00
3681 4083 1.630126 GCCTCCTCTGCAAGATCCCA 61.630 60.000 0.00 0.00 45.62 4.37
3682 4084 1.148048 GCCTCCTCTGCAAGATCCC 59.852 63.158 0.00 0.00 45.62 3.85
3683 4085 1.148048 GGCCTCCTCTGCAAGATCC 59.852 63.158 0.00 0.00 45.62 3.36
3684 4086 1.227497 CGGCCTCCTCTGCAAGATC 60.227 63.158 0.00 0.00 45.62 2.75
3685 4087 2.739996 CCGGCCTCCTCTGCAAGAT 61.740 63.158 0.00 0.00 45.62 2.40
3686 4088 3.393970 CCGGCCTCCTCTGCAAGA 61.394 66.667 0.00 0.00 43.69 3.02
3687 4089 3.710722 ACCGGCCTCCTCTGCAAG 61.711 66.667 0.00 0.00 0.00 4.01
3688 4090 4.020617 CACCGGCCTCCTCTGCAA 62.021 66.667 0.00 0.00 0.00 4.08
3691 4093 3.672295 GAAGCACCGGCCTCCTCTG 62.672 68.421 0.00 0.00 42.56 3.35
3692 4094 3.394836 GAAGCACCGGCCTCCTCT 61.395 66.667 0.00 0.00 42.56 3.69
3693 4095 2.932130 GATGAAGCACCGGCCTCCTC 62.932 65.000 0.00 0.00 42.56 3.71
3694 4096 3.011517 ATGAAGCACCGGCCTCCT 61.012 61.111 0.00 0.00 42.56 3.69
3695 4097 2.514824 GATGAAGCACCGGCCTCC 60.515 66.667 0.00 0.00 42.56 4.30
3696 4098 2.514824 GGATGAAGCACCGGCCTC 60.515 66.667 0.00 0.00 42.56 4.70
3697 4099 2.424842 TTTGGATGAAGCACCGGCCT 62.425 55.000 0.00 0.00 42.56 5.19
3698 4100 1.531739 TTTTGGATGAAGCACCGGCC 61.532 55.000 0.00 0.00 42.56 6.13
3699 4101 0.316841 TTTTTGGATGAAGCACCGGC 59.683 50.000 0.00 0.00 41.61 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.