Multiple sequence alignment - TraesCS1D01G278600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G278600 chr1D 100.000 4851 0 0 393 5243 376096379 376101229 0.000000e+00 8959.0
1 TraesCS1D01G278600 chr1D 100.000 143 0 0 1 143 376095987 376096129 1.120000e-66 265.0
2 TraesCS1D01G278600 chr1B 95.236 2540 93 8 2164 4701 502637945 502640458 0.000000e+00 3995.0
3 TraesCS1D01G278600 chr1B 88.986 1716 98 31 440 2093 502636272 502637958 0.000000e+00 2037.0
4 TraesCS1D01G278600 chr1B 85.305 558 44 21 4707 5243 517554357 517554897 4.620000e-150 542.0
5 TraesCS1D01G278600 chr1B 83.843 458 41 19 4709 5144 26265166 26265612 6.320000e-109 405.0
6 TraesCS1D01G278600 chr1A 95.361 1940 59 16 2538 4453 475311284 475313216 0.000000e+00 3055.0
7 TraesCS1D01G278600 chr1A 90.914 1684 90 26 446 2094 475309062 475310717 0.000000e+00 2204.0
8 TraesCS1D01G278600 chr1A 95.724 1263 43 3 3199 4453 475409850 475411109 0.000000e+00 2023.0
9 TraesCS1D01G278600 chr1A 97.602 417 10 0 2125 2541 475310713 475311129 0.000000e+00 715.0
10 TraesCS1D01G278600 chr1A 94.488 254 11 2 4450 4703 475313525 475313775 6.370000e-104 388.0
11 TraesCS1D01G278600 chr1A 94.444 252 12 1 4450 4701 475411189 475411438 2.290000e-103 387.0
12 TraesCS1D01G278600 chr4A 88.778 2415 186 39 2162 4534 701985699 701988070 0.000000e+00 2880.0
13 TraesCS1D01G278600 chr4A 85.536 560 43 19 4707 5243 616303461 616304005 7.670000e-153 551.0
14 TraesCS1D01G278600 chr4A 84.914 464 59 2 1112 1567 701985149 701985609 4.780000e-125 459.0
15 TraesCS1D01G278600 chr4A 91.506 259 17 4 821 1076 701984810 701985066 8.350000e-93 351.0
16 TraesCS1D01G278600 chr7B 88.235 544 47 12 4716 5243 312347376 312347918 7.410000e-178 634.0
17 TraesCS1D01G278600 chr3D 87.344 561 47 14 4707 5243 598252210 598251650 5.770000e-174 621.0
18 TraesCS1D01G278600 chr3D 84.592 331 39 8 4707 5029 434195625 434195951 8.470000e-83 318.0
19 TraesCS1D01G278600 chr3B 86.786 560 51 15 4707 5243 203550289 203550848 2.090000e-168 603.0
20 TraesCS1D01G278600 chr3B 83.624 458 41 19 4709 5144 766180665 766181110 2.940000e-107 399.0
21 TraesCS1D01G278600 chr4B 86.071 560 55 16 4707 5243 592280795 592281354 9.790000e-162 580.0
22 TraesCS1D01G278600 chr4B 86.151 556 42 18 4710 5243 633802805 633802263 7.620000e-158 568.0
23 TraesCS1D01G278600 chr6B 86.331 556 41 17 4710 5243 633390733 633390191 1.640000e-159 573.0
24 TraesCS1D01G278600 chr7A 85.409 562 58 17 4706 5243 621762788 621763349 3.550000e-156 562.0
25 TraesCS1D01G278600 chr6A 85.536 560 43 20 4707 5243 18033539 18032995 7.670000e-153 551.0
26 TraesCS1D01G278600 chr3A 85.000 560 46 21 4707 5243 909732 910276 7.730000e-148 534.0
27 TraesCS1D01G278600 chr2A 84.670 561 47 21 4707 5243 597219706 597219161 1.670000e-144 523.0
28 TraesCS1D01G278600 chr5B 82.938 422 51 15 4707 5107 585525058 585524637 1.390000e-95 361.0
29 TraesCS1D01G278600 chr5B 83.621 348 44 8 4707 5042 396156281 396155935 1.100000e-81 315.0
30 TraesCS1D01G278600 chr5B 100.000 32 0 0 440 471 590258592 590258561 5.670000e-05 60.2
31 TraesCS1D01G278600 chr5B 97.059 34 1 0 437 470 331313246 331313213 2.040000e-04 58.4
32 TraesCS1D01G278600 chr7D 100.000 33 0 0 439 471 543641590 543641558 1.580000e-05 62.1
33 TraesCS1D01G278600 chr2D 97.059 34 0 1 439 471 226541512 226541545 7.330000e-04 56.5
34 TraesCS1D01G278600 chr5A 96.970 33 0 1 439 471 536361844 536361875 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G278600 chr1D 376095987 376101229 5242 False 4612.0 8959 100.000000 1 5243 2 chr1D.!!$F1 5242
1 TraesCS1D01G278600 chr1B 502636272 502640458 4186 False 3016.0 3995 92.111000 440 4701 2 chr1B.!!$F3 4261
2 TraesCS1D01G278600 chr1B 517554357 517554897 540 False 542.0 542 85.305000 4707 5243 1 chr1B.!!$F2 536
3 TraesCS1D01G278600 chr1A 475309062 475313775 4713 False 1590.5 3055 94.591250 446 4703 4 chr1A.!!$F1 4257
4 TraesCS1D01G278600 chr1A 475409850 475411438 1588 False 1205.0 2023 95.084000 3199 4701 2 chr1A.!!$F2 1502
5 TraesCS1D01G278600 chr4A 701984810 701988070 3260 False 1230.0 2880 88.399333 821 4534 3 chr4A.!!$F2 3713
6 TraesCS1D01G278600 chr4A 616303461 616304005 544 False 551.0 551 85.536000 4707 5243 1 chr4A.!!$F1 536
7 TraesCS1D01G278600 chr7B 312347376 312347918 542 False 634.0 634 88.235000 4716 5243 1 chr7B.!!$F1 527
8 TraesCS1D01G278600 chr3D 598251650 598252210 560 True 621.0 621 87.344000 4707 5243 1 chr3D.!!$R1 536
9 TraesCS1D01G278600 chr3B 203550289 203550848 559 False 603.0 603 86.786000 4707 5243 1 chr3B.!!$F1 536
10 TraesCS1D01G278600 chr4B 592280795 592281354 559 False 580.0 580 86.071000 4707 5243 1 chr4B.!!$F1 536
11 TraesCS1D01G278600 chr4B 633802263 633802805 542 True 568.0 568 86.151000 4710 5243 1 chr4B.!!$R1 533
12 TraesCS1D01G278600 chr6B 633390191 633390733 542 True 573.0 573 86.331000 4710 5243 1 chr6B.!!$R1 533
13 TraesCS1D01G278600 chr7A 621762788 621763349 561 False 562.0 562 85.409000 4706 5243 1 chr7A.!!$F1 537
14 TraesCS1D01G278600 chr6A 18032995 18033539 544 True 551.0 551 85.536000 4707 5243 1 chr6A.!!$R1 536
15 TraesCS1D01G278600 chr3A 909732 910276 544 False 534.0 534 85.000000 4707 5243 1 chr3A.!!$F1 536
16 TraesCS1D01G278600 chr2A 597219161 597219706 545 True 523.0 523 84.670000 4707 5243 1 chr2A.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.032952 CGACCAGGACAAAGAACCGA 59.967 55.000 0.00 0.00 0.00 4.69 F
419 420 0.107703 TGCCAGGCTTTACTCGATGG 60.108 55.000 14.15 0.00 0.00 3.51 F
577 594 0.584396 GCGTGTTCGGACATCAAACA 59.416 50.000 0.00 0.00 38.23 2.83 F
1793 1893 0.679640 TCAAGGGCCGATTTTGCGAT 60.680 50.000 0.00 0.00 0.00 4.58 F
2592 2892 2.965831 TGGACACTTGAGTACTCTGCTT 59.034 45.455 23.01 4.56 0.00 3.91 F
3550 3895 1.696063 AACAAGCTGCATGGTTCAGT 58.304 45.000 9.85 0.00 33.63 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 1196 1.305213 GCCTGGGCCCAATGAAGAA 60.305 57.895 28.29 0.00 34.56 2.52 R
1729 1813 2.069273 AGAAACATGTGTAGCACGAGC 58.931 47.619 0.00 0.00 37.14 5.03 R
1819 1919 2.409948 AGTTGCTGACTTATCCCTGC 57.590 50.000 0.00 0.00 33.92 4.85 R
3364 3707 0.112218 TAGCCCTGCATGGTGTTTGT 59.888 50.000 9.95 0.00 0.00 2.83 R
3723 4076 1.596260 CGGTCATGATAACTGCTGCAG 59.404 52.381 27.02 27.02 37.52 4.41 R
5047 5768 1.566018 CGGTGTTGAGCGGGTCTTTC 61.566 60.000 8.82 0.14 39.46 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.671411 CGACGGGCCGGATCTAGG 61.671 72.222 31.78 6.79 0.00 3.02
80 81 4.832608 CCGCTGTAACCGGCCCTC 62.833 72.222 0.00 0.00 40.02 4.30
81 82 4.832608 CGCTGTAACCGGCCCTCC 62.833 72.222 0.00 0.00 40.02 4.30
82 83 3.712907 GCTGTAACCGGCCCTCCA 61.713 66.667 0.00 0.00 36.95 3.86
83 84 2.267961 CTGTAACCGGCCCTCCAC 59.732 66.667 0.00 0.00 0.00 4.02
84 85 3.659089 CTGTAACCGGCCCTCCACG 62.659 68.421 0.00 0.00 0.00 4.94
85 86 3.384532 GTAACCGGCCCTCCACGA 61.385 66.667 0.00 0.00 0.00 4.35
86 87 3.384532 TAACCGGCCCTCCACGAC 61.385 66.667 0.00 0.00 0.00 4.34
92 93 4.083862 GCCCTCCACGACCAGGAC 62.084 72.222 0.00 0.00 30.32 3.85
93 94 2.603473 CCCTCCACGACCAGGACA 60.603 66.667 0.00 0.00 30.32 4.02
94 95 2.214216 CCCTCCACGACCAGGACAA 61.214 63.158 0.00 0.00 30.32 3.18
95 96 1.752198 CCTCCACGACCAGGACAAA 59.248 57.895 0.00 0.00 30.32 2.83
96 97 0.320771 CCTCCACGACCAGGACAAAG 60.321 60.000 0.00 0.00 30.32 2.77
97 98 0.679505 CTCCACGACCAGGACAAAGA 59.320 55.000 0.00 0.00 0.00 2.52
98 99 1.070134 CTCCACGACCAGGACAAAGAA 59.930 52.381 0.00 0.00 0.00 2.52
99 100 1.202604 TCCACGACCAGGACAAAGAAC 60.203 52.381 0.00 0.00 0.00 3.01
100 101 1.226746 CACGACCAGGACAAAGAACC 58.773 55.000 0.00 0.00 0.00 3.62
101 102 0.249741 ACGACCAGGACAAAGAACCG 60.250 55.000 0.00 0.00 0.00 4.44
102 103 0.032952 CGACCAGGACAAAGAACCGA 59.967 55.000 0.00 0.00 0.00 4.69
103 104 1.539496 CGACCAGGACAAAGAACCGAA 60.539 52.381 0.00 0.00 0.00 4.30
104 105 2.143925 GACCAGGACAAAGAACCGAAG 58.856 52.381 0.00 0.00 0.00 3.79
105 106 1.766496 ACCAGGACAAAGAACCGAAGA 59.234 47.619 0.00 0.00 0.00 2.87
106 107 2.143925 CCAGGACAAAGAACCGAAGAC 58.856 52.381 0.00 0.00 0.00 3.01
107 108 2.143925 CAGGACAAAGAACCGAAGACC 58.856 52.381 0.00 0.00 0.00 3.85
108 109 1.145803 GGACAAAGAACCGAAGACCG 58.854 55.000 0.00 0.00 38.18 4.79
118 119 2.184579 GAAGACCGGCTTCCTCCG 59.815 66.667 21.17 0.00 45.90 4.63
125 126 4.214327 GGCTTCCTCCGAGCTCCG 62.214 72.222 8.47 1.13 40.01 4.63
126 127 4.882396 GCTTCCTCCGAGCTCCGC 62.882 72.222 8.47 0.00 37.18 5.54
127 128 4.214327 CTTCCTCCGAGCTCCGCC 62.214 72.222 8.47 0.00 36.84 6.13
131 132 4.821589 CTCCGAGCTCCGCCCAAC 62.822 72.222 8.47 0.00 36.84 3.77
409 410 3.860681 CCAACACTTGCCAGGCTT 58.139 55.556 14.15 0.00 0.00 4.35
410 411 2.126951 CCAACACTTGCCAGGCTTT 58.873 52.632 14.15 0.00 0.00 3.51
411 412 1.327303 CCAACACTTGCCAGGCTTTA 58.673 50.000 14.15 0.00 0.00 1.85
412 413 1.000274 CCAACACTTGCCAGGCTTTAC 60.000 52.381 14.15 0.00 0.00 2.01
413 414 1.956477 CAACACTTGCCAGGCTTTACT 59.044 47.619 14.15 0.00 0.00 2.24
414 415 1.897560 ACACTTGCCAGGCTTTACTC 58.102 50.000 14.15 0.00 0.00 2.59
415 416 0.798776 CACTTGCCAGGCTTTACTCG 59.201 55.000 14.15 0.00 0.00 4.18
416 417 0.685097 ACTTGCCAGGCTTTACTCGA 59.315 50.000 14.15 0.00 0.00 4.04
417 418 1.279271 ACTTGCCAGGCTTTACTCGAT 59.721 47.619 14.15 0.00 0.00 3.59
418 419 1.667724 CTTGCCAGGCTTTACTCGATG 59.332 52.381 14.15 0.00 0.00 3.84
419 420 0.107703 TGCCAGGCTTTACTCGATGG 60.108 55.000 14.15 0.00 0.00 3.51
420 421 1.440145 GCCAGGCTTTACTCGATGGC 61.440 60.000 3.29 6.65 45.61 4.40
421 422 1.154205 CCAGGCTTTACTCGATGGCG 61.154 60.000 0.00 0.00 39.35 5.69
422 423 1.521681 AGGCTTTACTCGATGGCGC 60.522 57.895 0.00 0.00 37.46 6.53
423 424 1.813753 GGCTTTACTCGATGGCGCA 60.814 57.895 10.83 0.00 37.46 6.09
424 425 1.348594 GCTTTACTCGATGGCGCAC 59.651 57.895 10.83 0.00 37.46 5.34
425 426 1.358725 GCTTTACTCGATGGCGCACA 61.359 55.000 10.83 5.20 37.46 4.57
426 427 0.647410 CTTTACTCGATGGCGCACAG 59.353 55.000 10.83 0.00 37.46 3.66
427 428 0.739462 TTTACTCGATGGCGCACAGG 60.739 55.000 10.83 1.69 37.46 4.00
428 429 3.716539 TACTCGATGGCGCACAGGC 62.717 63.158 10.83 0.81 46.95 4.85
429 430 4.827087 CTCGATGGCGCACAGGCT 62.827 66.667 10.83 0.00 46.88 4.58
496 497 2.345991 CGAAGCGAAACCCTGGGA 59.654 61.111 22.23 0.00 0.00 4.37
499 500 1.406341 CGAAGCGAAACCCTGGGATAA 60.406 52.381 22.23 0.00 0.00 1.75
500 501 2.745152 CGAAGCGAAACCCTGGGATAAT 60.745 50.000 22.23 1.52 0.00 1.28
501 502 2.348411 AGCGAAACCCTGGGATAATG 57.652 50.000 22.23 6.07 0.00 1.90
502 503 0.668535 GCGAAACCCTGGGATAATGC 59.331 55.000 22.23 12.47 0.00 3.56
503 504 2.021723 GCGAAACCCTGGGATAATGCA 61.022 52.381 22.23 0.00 0.00 3.96
504 505 2.586425 CGAAACCCTGGGATAATGCAT 58.414 47.619 22.23 0.00 0.00 3.96
543 560 6.316390 AGTCGTCTTGTCAAAACTCATTTCTT 59.684 34.615 0.00 0.00 0.00 2.52
577 594 0.584396 GCGTGTTCGGACATCAAACA 59.416 50.000 0.00 0.00 38.23 2.83
582 599 1.136336 GTTCGGACATCAAACAGACGC 60.136 52.381 0.00 0.00 0.00 5.19
606 623 5.893824 CCCAGTAGGCTTCCTAAAATTCAAT 59.106 40.000 0.00 0.00 37.91 2.57
612 629 5.355350 AGGCTTCCTAAAATTCAATCGTCTG 59.645 40.000 0.00 0.00 28.47 3.51
621 638 5.614324 AATTCAATCGTCTGGATAGTCCA 57.386 39.130 0.00 0.00 45.98 4.02
668 685 4.437682 TGAGGAAGAAATGTGGTTGTCT 57.562 40.909 0.00 0.00 0.00 3.41
684 701 4.325030 GGTTGTCTGGAAGGGGATGATTAA 60.325 45.833 0.00 0.00 0.00 1.40
717 734 1.382914 ATAAGCCAGTGAAGGGGGTT 58.617 50.000 0.00 0.00 45.96 4.11
869 889 4.035558 CCAACCCAGTTGATCAATCATACG 59.964 45.833 12.12 0.50 45.28 3.06
1124 1195 5.568747 CGAATATCCGCTTCTTCTTCTTC 57.431 43.478 0.00 0.00 0.00 2.87
1125 1196 5.285651 CGAATATCCGCTTCTTCTTCTTCT 58.714 41.667 0.00 0.00 0.00 2.85
1126 1197 5.751028 CGAATATCCGCTTCTTCTTCTTCTT 59.249 40.000 0.00 0.00 0.00 2.52
1569 1652 4.292186 TGCTCTGACCTTAAGCAAGAAT 57.708 40.909 0.00 0.00 42.71 2.40
1577 1660 6.977213 TGACCTTAAGCAAGAATTTGGTAAC 58.023 36.000 0.00 0.00 43.81 2.50
1625 1708 7.148306 ACCATTAGTTGAGTAAATTGCTTACCG 60.148 37.037 0.00 0.00 40.84 4.02
1663 1746 6.849811 GCATGATGTATCAACTTCAGATTTCG 59.150 38.462 0.00 0.00 41.50 3.46
1729 1813 6.738114 ACAACAACCAAGTTAACATCATGAG 58.262 36.000 8.61 0.00 0.00 2.90
1730 1814 5.376854 ACAACCAAGTTAACATCATGAGC 57.623 39.130 8.61 0.00 0.00 4.26
1731 1815 5.072741 ACAACCAAGTTAACATCATGAGCT 58.927 37.500 8.61 0.00 0.00 4.09
1732 1816 5.182001 ACAACCAAGTTAACATCATGAGCTC 59.818 40.000 6.82 6.82 0.00 4.09
1733 1817 3.935203 ACCAAGTTAACATCATGAGCTCG 59.065 43.478 9.64 0.00 0.00 5.03
1734 1818 3.935203 CCAAGTTAACATCATGAGCTCGT 59.065 43.478 9.64 5.78 0.00 4.18
1735 1819 4.201753 CCAAGTTAACATCATGAGCTCGTG 60.202 45.833 27.02 27.02 0.00 4.35
1736 1820 2.932614 AGTTAACATCATGAGCTCGTGC 59.067 45.455 27.90 13.85 40.05 5.34
1768 1856 6.672218 TGTTTCTAGTATGATTCTTGGAGGGA 59.328 38.462 0.00 0.00 0.00 4.20
1793 1893 0.679640 TCAAGGGCCGATTTTGCGAT 60.680 50.000 0.00 0.00 0.00 4.58
1819 1919 4.419522 ACCAAAATTAGCAAGCAGTACG 57.580 40.909 0.00 0.00 0.00 3.67
1820 1920 3.171277 CCAAAATTAGCAAGCAGTACGC 58.829 45.455 0.00 2.08 42.91 4.42
1821 1921 3.365868 CCAAAATTAGCAAGCAGTACGCA 60.366 43.478 11.30 0.00 46.13 5.24
1891 2018 7.594758 ACAATGTAGAAATTTGACAATTGGACG 59.405 33.333 10.83 0.00 32.57 4.79
1899 2026 4.582701 TTGACAATTGGACGCTTGAAAT 57.417 36.364 10.83 0.00 0.00 2.17
1909 2036 5.924356 TGGACGCTTGAAATATCCAATCTA 58.076 37.500 0.00 0.00 36.51 1.98
1910 2037 5.991606 TGGACGCTTGAAATATCCAATCTAG 59.008 40.000 0.00 0.00 36.51 2.43
1925 2052 7.803487 TCCAATCTAGTGGATGATGTGATAT 57.197 36.000 0.00 0.00 42.97 1.63
1926 2053 8.899887 TCCAATCTAGTGGATGATGTGATATA 57.100 34.615 0.00 0.00 42.97 0.86
1927 2054 9.498039 TCCAATCTAGTGGATGATGTGATATAT 57.502 33.333 0.00 0.00 42.97 0.86
1928 2055 9.543783 CCAATCTAGTGGATGATGTGATATATG 57.456 37.037 0.00 0.00 41.65 1.78
1932 2059 9.539194 TCTAGTGGATGATGTGATATATGAACT 57.461 33.333 0.00 0.00 0.00 3.01
1935 2062 9.319060 AGTGGATGATGTGATATATGAACTACT 57.681 33.333 0.00 0.00 0.00 2.57
1936 2063 9.579768 GTGGATGATGTGATATATGAACTACTC 57.420 37.037 0.00 0.00 0.00 2.59
1938 2065 9.800433 GGATGATGTGATATATGAACTACTCTG 57.200 37.037 0.00 0.00 0.00 3.35
2104 2231 7.498570 TGAACTAATGCAGCATGTATATTGTGA 59.501 33.333 9.18 0.00 41.90 3.58
2115 2242 7.118825 AGCATGTATATTGTGATTGGAGATTCG 59.881 37.037 0.00 0.00 0.00 3.34
2122 2249 9.784531 ATATTGTGATTGGAGATTCGAATACTT 57.215 29.630 11.38 0.00 0.00 2.24
2145 2272 9.691362 ACTTAAGCATTTGTAACAACCATTAAG 57.309 29.630 1.29 0.00 34.36 1.85
2160 2287 8.267894 ACAACCATTAAGCATGAGTAACTAGAT 58.732 33.333 0.00 0.00 34.31 1.98
2183 2310 5.101628 TGAGAACAAACACAGCAAATTGTC 58.898 37.500 0.00 0.00 35.09 3.18
2592 2892 2.965831 TGGACACTTGAGTACTCTGCTT 59.034 45.455 23.01 4.56 0.00 3.91
2618 2918 8.886719 TCAAGCAACATTAATCTCAGATTACTG 58.113 33.333 18.68 18.68 44.66 2.74
2704 3015 8.778358 ACTTTACTTCTTTGAGATCAATCACAC 58.222 33.333 0.00 0.00 35.55 3.82
2781 3094 7.308649 GCATACAGGTATTCTTCGTCTCATAGA 60.309 40.741 0.00 0.00 0.00 1.98
3061 3402 5.830799 TCATCATGTCACATATAGGCCTT 57.169 39.130 12.58 0.81 0.00 4.35
3550 3895 1.696063 AACAAGCTGCATGGTTCAGT 58.304 45.000 9.85 0.00 33.63 3.41
3589 3942 5.659463 GTCATGGCTCTATCAGGATATGTC 58.341 45.833 0.00 0.00 0.00 3.06
3698 4051 2.679837 CCAGGTGTGTCATTGCTATGTC 59.320 50.000 8.01 3.38 33.34 3.06
3723 4076 2.093537 TTTGCCCAAACACCATCGGC 62.094 55.000 0.00 0.00 40.16 5.54
3837 4190 8.316946 TGTTTCCTCATATCATATCCTGATCAC 58.683 37.037 0.00 0.00 43.70 3.06
4022 4380 7.450124 AGATCCATATTTCTGCATTGATGAC 57.550 36.000 0.00 0.00 0.00 3.06
4119 4477 2.545952 CGCCATAGTTAGCACAGTAGGG 60.546 54.545 0.00 0.00 0.00 3.53
4176 4534 1.550130 CCTTCCTCACCCTAACGGCA 61.550 60.000 0.00 0.00 33.26 5.69
4198 4556 0.744414 GCTCTATTTCAGCGCCACCA 60.744 55.000 2.29 0.00 0.00 4.17
4215 4573 4.811557 GCCACCATCTTCTACAACATCTAC 59.188 45.833 0.00 0.00 0.00 2.59
4370 4738 5.994054 GCTGGCTCATTCATATAAGACTGAA 59.006 40.000 0.57 0.00 35.95 3.02
4464 5142 9.308318 CTCTCTCATTTAGTAGTAAGAAAAGGC 57.692 37.037 0.00 0.00 0.00 4.35
4501 5179 4.917385 ACCATGTTGCCTCTTACATTACA 58.083 39.130 0.00 0.00 32.88 2.41
4559 5237 6.010850 AGTAGTACTGAACTCTGGACAATCA 58.989 40.000 5.39 0.00 39.80 2.57
4619 5297 3.811083 TCATTCCGTTTACAACAGTGGT 58.189 40.909 0.00 0.00 0.00 4.16
4660 5338 5.709164 CCTTCCCATGCCTTCTCTTAATATG 59.291 44.000 0.00 0.00 0.00 1.78
4681 5359 1.135199 CAGAAGTTGCACCATGATGCC 60.135 52.381 10.26 0.00 45.50 4.40
4703 5381 3.628487 CCTTTGTTACCTCAAAACGACCA 59.372 43.478 0.00 0.00 36.96 4.02
4704 5382 4.096682 CCTTTGTTACCTCAAAACGACCAA 59.903 41.667 0.00 0.00 36.96 3.67
4731 5409 7.201487 CGCGTATAACCAATTATAGCAGCATAA 60.201 37.037 0.00 0.00 34.57 1.90
4923 5625 3.313526 CAGGATAACTTTGCGATCCTTGG 59.686 47.826 0.00 0.00 45.94 3.61
4993 5696 6.012113 AGAATTCCCTTCAATGAATGTGACA 58.988 36.000 0.65 0.00 36.24 3.58
5002 5705 5.155643 TCAATGAATGTGACAAAGCAATCG 58.844 37.500 0.00 0.00 0.00 3.34
5034 5741 3.456380 TTGCCCCATCTTCTTAGCTTT 57.544 42.857 0.00 0.00 0.00 3.51
5068 5789 4.309950 GACCCGCTCAACACCGGT 62.310 66.667 0.00 0.00 42.87 5.28
5113 5834 6.980397 AGCACCAATTTGAGAAGTTTGTAAAG 59.020 34.615 0.00 0.00 0.00 1.85
5117 5838 9.750125 ACCAATTTGAGAAGTTTGTAAAGAATC 57.250 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.671411 CCTAGATCCGGCCCGTCG 61.671 72.222 0.85 0.00 0.00 5.12
6 7 3.992317 GCCTAGATCCGGCCCGTC 61.992 72.222 11.61 0.00 41.73 4.79
11 12 3.816367 GGCACTGCCTAGATCCGGC 62.816 68.421 13.28 14.97 46.69 6.13
12 13 2.423446 GGCACTGCCTAGATCCGG 59.577 66.667 13.28 0.00 46.69 5.14
43 44 3.435186 GCTCTCGCTTGGGTTGGC 61.435 66.667 0.00 0.00 0.00 4.52
44 45 2.747855 GGCTCTCGCTTGGGTTGG 60.748 66.667 0.00 0.00 36.09 3.77
45 46 3.121030 CGGCTCTCGCTTGGGTTG 61.121 66.667 0.00 0.00 36.09 3.77
64 65 4.832608 GGAGGGCCGGTTACAGCG 62.833 72.222 1.90 0.00 39.06 5.18
65 66 3.712907 TGGAGGGCCGGTTACAGC 61.713 66.667 1.90 0.00 36.79 4.40
66 67 2.267961 GTGGAGGGCCGGTTACAG 59.732 66.667 1.90 0.00 36.79 2.74
67 68 3.697747 CGTGGAGGGCCGGTTACA 61.698 66.667 1.90 0.00 36.79 2.41
68 69 3.384532 TCGTGGAGGGCCGGTTAC 61.385 66.667 1.90 0.00 36.79 2.50
69 70 3.384532 GTCGTGGAGGGCCGGTTA 61.385 66.667 1.90 0.00 36.79 2.85
75 76 4.083862 GTCCTGGTCGTGGAGGGC 62.084 72.222 0.00 0.00 33.78 5.19
76 77 1.764571 TTTGTCCTGGTCGTGGAGGG 61.765 60.000 0.00 0.00 33.78 4.30
77 78 0.320771 CTTTGTCCTGGTCGTGGAGG 60.321 60.000 0.00 0.00 33.78 4.30
78 79 0.679505 TCTTTGTCCTGGTCGTGGAG 59.320 55.000 0.00 0.00 33.78 3.86
79 80 1.124780 TTCTTTGTCCTGGTCGTGGA 58.875 50.000 0.00 0.00 0.00 4.02
80 81 1.226746 GTTCTTTGTCCTGGTCGTGG 58.773 55.000 0.00 0.00 0.00 4.94
81 82 1.226746 GGTTCTTTGTCCTGGTCGTG 58.773 55.000 0.00 0.00 0.00 4.35
82 83 0.249741 CGGTTCTTTGTCCTGGTCGT 60.250 55.000 0.00 0.00 0.00 4.34
83 84 0.032952 TCGGTTCTTTGTCCTGGTCG 59.967 55.000 0.00 0.00 0.00 4.79
84 85 2.143925 CTTCGGTTCTTTGTCCTGGTC 58.856 52.381 0.00 0.00 0.00 4.02
85 86 1.766496 TCTTCGGTTCTTTGTCCTGGT 59.234 47.619 0.00 0.00 0.00 4.00
86 87 2.143925 GTCTTCGGTTCTTTGTCCTGG 58.856 52.381 0.00 0.00 0.00 4.45
87 88 2.143925 GGTCTTCGGTTCTTTGTCCTG 58.856 52.381 0.00 0.00 0.00 3.86
88 89 1.270147 CGGTCTTCGGTTCTTTGTCCT 60.270 52.381 0.00 0.00 34.75 3.85
89 90 1.145803 CGGTCTTCGGTTCTTTGTCC 58.854 55.000 0.00 0.00 34.75 4.02
108 109 4.214327 CGGAGCTCGGAGGAAGCC 62.214 72.222 15.82 0.00 34.75 4.35
392 393 1.000274 GTAAAGCCTGGCAAGTGTTGG 60.000 52.381 22.65 0.00 0.00 3.77
393 394 1.956477 AGTAAAGCCTGGCAAGTGTTG 59.044 47.619 22.65 0.00 0.00 3.33
394 395 2.230660 GAGTAAAGCCTGGCAAGTGTT 58.769 47.619 22.65 2.45 0.00 3.32
395 396 1.878102 CGAGTAAAGCCTGGCAAGTGT 60.878 52.381 22.65 1.58 0.00 3.55
396 397 0.798776 CGAGTAAAGCCTGGCAAGTG 59.201 55.000 22.65 0.00 0.00 3.16
397 398 0.685097 TCGAGTAAAGCCTGGCAAGT 59.315 50.000 22.65 8.59 0.00 3.16
398 399 1.667724 CATCGAGTAAAGCCTGGCAAG 59.332 52.381 22.65 3.74 0.00 4.01
399 400 1.678728 CCATCGAGTAAAGCCTGGCAA 60.679 52.381 22.65 2.53 0.00 4.52
400 401 0.107703 CCATCGAGTAAAGCCTGGCA 60.108 55.000 22.65 0.00 0.00 4.92
401 402 1.440145 GCCATCGAGTAAAGCCTGGC 61.440 60.000 11.65 11.65 42.00 4.85
402 403 1.154205 CGCCATCGAGTAAAGCCTGG 61.154 60.000 0.00 0.00 38.10 4.45
403 404 1.766143 GCGCCATCGAGTAAAGCCTG 61.766 60.000 0.00 0.00 38.10 4.85
404 405 1.521681 GCGCCATCGAGTAAAGCCT 60.522 57.895 0.00 0.00 38.10 4.58
405 406 1.813753 TGCGCCATCGAGTAAAGCC 60.814 57.895 4.18 0.00 38.10 4.35
406 407 1.348594 GTGCGCCATCGAGTAAAGC 59.651 57.895 4.18 0.00 38.10 3.51
407 408 0.647410 CTGTGCGCCATCGAGTAAAG 59.353 55.000 4.18 0.00 38.10 1.85
408 409 0.739462 CCTGTGCGCCATCGAGTAAA 60.739 55.000 4.18 0.00 38.10 2.01
409 410 1.153647 CCTGTGCGCCATCGAGTAA 60.154 57.895 4.18 0.00 38.10 2.24
410 411 2.494445 CCTGTGCGCCATCGAGTA 59.506 61.111 4.18 0.00 38.10 2.59
412 413 4.827087 AGCCTGTGCGCCATCGAG 62.827 66.667 4.18 0.00 44.33 4.04
434 435 4.828925 GAGCGACTGAGGGGCTGC 62.829 72.222 4.23 0.00 37.10 5.25
435 436 4.504916 CGAGCGACTGAGGGGCTG 62.505 72.222 4.23 0.00 37.10 4.85
464 465 2.564553 CTTCGCTCCTGAACCCCTCG 62.565 65.000 0.00 0.00 0.00 4.63
499 500 8.677300 AGACGACTTTAATCATTTGTTATGCAT 58.323 29.630 3.79 3.79 0.00 3.96
500 501 8.039603 AGACGACTTTAATCATTTGTTATGCA 57.960 30.769 0.00 0.00 0.00 3.96
501 502 8.788813 CAAGACGACTTTAATCATTTGTTATGC 58.211 33.333 0.00 0.00 33.70 3.14
502 503 9.825972 ACAAGACGACTTTAATCATTTGTTATG 57.174 29.630 0.00 0.00 33.70 1.90
504 505 9.047371 TGACAAGACGACTTTAATCATTTGTTA 57.953 29.630 0.00 0.00 33.70 2.41
543 560 1.271379 ACACGCTCGGACATGTAAGAA 59.729 47.619 0.00 0.00 0.00 2.52
549 566 3.072598 CGAACACGCTCGGACATG 58.927 61.111 0.00 0.00 35.14 3.21
582 599 4.855340 TGAATTTTAGGAAGCCTACTGGG 58.145 43.478 0.00 0.00 35.63 4.45
612 629 8.110860 TGAATTTGAAAAAGTCTGGACTATCC 57.889 34.615 3.54 0.00 41.58 2.59
627 644 9.919416 TTCCTCATATATGGTCTGAATTTGAAA 57.081 29.630 12.78 0.00 0.00 2.69
628 645 9.565090 CTTCCTCATATATGGTCTGAATTTGAA 57.435 33.333 12.78 1.70 0.00 2.69
629 646 8.937835 TCTTCCTCATATATGGTCTGAATTTGA 58.062 33.333 12.78 3.12 0.00 2.69
668 685 5.163055 CCTCATCTTTAATCATCCCCTTCCA 60.163 44.000 0.00 0.00 0.00 3.53
707 724 1.702957 CACCTCTTACAACCCCCTTCA 59.297 52.381 0.00 0.00 0.00 3.02
708 725 1.982958 TCACCTCTTACAACCCCCTTC 59.017 52.381 0.00 0.00 0.00 3.46
711 728 0.618981 CCTCACCTCTTACAACCCCC 59.381 60.000 0.00 0.00 0.00 5.40
717 734 3.695830 ATTTTCGCCTCACCTCTTACA 57.304 42.857 0.00 0.00 0.00 2.41
795 813 1.183676 ACGAAAGGTGGTAGGTCGCT 61.184 55.000 0.00 0.00 35.15 4.93
869 889 5.308825 ACAGAAGGCAAGTGGTATATATGC 58.691 41.667 0.00 0.00 36.31 3.14
956 977 1.734477 CTGACCGAACGTGCTCAGG 60.734 63.158 5.11 0.00 0.00 3.86
966 987 0.034896 GGGAACTGAAGCTGACCGAA 59.965 55.000 0.00 0.00 0.00 4.30
1047 1068 2.279517 GCGGATCTGTACCTGGCG 60.280 66.667 2.89 0.00 0.00 5.69
1124 1195 1.325476 GCCTGGGCCCAATGAAGAAG 61.325 60.000 28.29 11.46 34.56 2.85
1125 1196 1.305213 GCCTGGGCCCAATGAAGAA 60.305 57.895 28.29 0.00 34.56 2.52
1126 1197 2.360191 GCCTGGGCCCAATGAAGA 59.640 61.111 28.29 0.00 34.56 2.87
1625 1708 4.346734 ACATCATGCATCGTTGACTTTC 57.653 40.909 0.00 0.00 0.00 2.62
1663 1746 5.402398 CAGCCTGGCTTAAAAGAATGTAAC 58.598 41.667 20.79 0.00 36.40 2.50
1694 1778 6.198650 ACTTGGTTGTTGTTAACTTGGTAC 57.801 37.500 7.22 0.00 0.00 3.34
1729 1813 2.069273 AGAAACATGTGTAGCACGAGC 58.931 47.619 0.00 0.00 37.14 5.03
1730 1814 4.486090 ACTAGAAACATGTGTAGCACGAG 58.514 43.478 0.00 0.00 37.14 4.18
1731 1815 4.514781 ACTAGAAACATGTGTAGCACGA 57.485 40.909 0.00 0.00 37.14 4.35
1732 1816 6.033966 TCATACTAGAAACATGTGTAGCACG 58.966 40.000 0.00 0.00 37.14 5.34
1733 1817 8.425577 AATCATACTAGAAACATGTGTAGCAC 57.574 34.615 0.00 0.00 34.56 4.40
1734 1818 8.478066 AGAATCATACTAGAAACATGTGTAGCA 58.522 33.333 0.00 0.00 0.00 3.49
1735 1819 8.879342 AGAATCATACTAGAAACATGTGTAGC 57.121 34.615 0.00 0.00 0.00 3.58
1737 1821 9.599866 CCAAGAATCATACTAGAAACATGTGTA 57.400 33.333 0.00 0.00 0.00 2.90
1738 1822 8.321353 TCCAAGAATCATACTAGAAACATGTGT 58.679 33.333 0.00 0.00 0.00 3.72
1768 1856 3.663025 CAAAATCGGCCCTTGAAATTGT 58.337 40.909 0.00 0.00 0.00 2.71
1793 1893 6.648879 ACTGCTTGCTAATTTTGGTTTCTA 57.351 33.333 0.00 0.00 0.00 2.10
1819 1919 2.409948 AGTTGCTGACTTATCCCTGC 57.590 50.000 0.00 0.00 33.92 4.85
1820 1920 3.937706 CTCAAGTTGCTGACTTATCCCTG 59.062 47.826 0.00 0.00 46.75 4.45
1821 1921 3.620966 GCTCAAGTTGCTGACTTATCCCT 60.621 47.826 0.00 0.00 46.75 4.20
1872 1975 4.853924 AGCGTCCAATTGTCAAATTTCT 57.146 36.364 4.43 0.00 33.59 2.52
1873 1976 4.981674 TCAAGCGTCCAATTGTCAAATTTC 59.018 37.500 4.43 0.00 33.59 2.17
1909 2036 9.319060 AGTAGTTCATATATCACATCATCCACT 57.681 33.333 0.00 0.00 0.00 4.00
1910 2037 9.579768 GAGTAGTTCATATATCACATCATCCAC 57.420 37.037 0.00 0.00 0.00 4.02
1924 2051 7.735326 AGGGTGTTTACAGAGTAGTTCATAT 57.265 36.000 0.00 0.00 0.00 1.78
1925 2052 7.233962 TCAAGGGTGTTTACAGAGTAGTTCATA 59.766 37.037 0.00 0.00 0.00 2.15
1926 2053 6.042781 TCAAGGGTGTTTACAGAGTAGTTCAT 59.957 38.462 0.00 0.00 0.00 2.57
1927 2054 5.364446 TCAAGGGTGTTTACAGAGTAGTTCA 59.636 40.000 0.00 0.00 0.00 3.18
1928 2055 5.695363 GTCAAGGGTGTTTACAGAGTAGTTC 59.305 44.000 0.00 0.00 0.00 3.01
1929 2056 5.365895 AGTCAAGGGTGTTTACAGAGTAGTT 59.634 40.000 0.00 0.00 0.00 2.24
1931 2058 5.221461 ACAGTCAAGGGTGTTTACAGAGTAG 60.221 44.000 0.00 0.00 0.00 2.57
1932 2059 4.652421 ACAGTCAAGGGTGTTTACAGAGTA 59.348 41.667 0.00 0.00 0.00 2.59
1934 2061 4.073293 ACAGTCAAGGGTGTTTACAGAG 57.927 45.455 0.00 0.00 0.00 3.35
1935 2062 4.497291 AACAGTCAAGGGTGTTTACAGA 57.503 40.909 0.00 0.00 32.93 3.41
1939 2066 5.591067 CCAAGTAAACAGTCAAGGGTGTTTA 59.409 40.000 4.04 4.04 43.45 2.01
1940 2067 4.401202 CCAAGTAAACAGTCAAGGGTGTTT 59.599 41.667 5.82 5.82 46.20 2.83
2005 2132 7.062956 GTGTTGCAATGGTATTTTAGCCTTTAC 59.937 37.037 0.59 0.00 0.00 2.01
2077 2204 8.294577 CACAATATACATGCTGCATTAGTTCAT 58.705 33.333 13.38 3.38 0.00 2.57
2078 2205 7.498570 TCACAATATACATGCTGCATTAGTTCA 59.501 33.333 13.38 1.18 0.00 3.18
2079 2206 7.864686 TCACAATATACATGCTGCATTAGTTC 58.135 34.615 13.38 0.00 0.00 3.01
2080 2207 7.806409 TCACAATATACATGCTGCATTAGTT 57.194 32.000 13.38 1.39 0.00 2.24
2081 2208 7.991084 ATCACAATATACATGCTGCATTAGT 57.009 32.000 13.38 11.40 0.00 2.24
2082 2209 7.753580 CCAATCACAATATACATGCTGCATTAG 59.246 37.037 13.38 5.36 0.00 1.73
2083 2210 7.447853 TCCAATCACAATATACATGCTGCATTA 59.552 33.333 13.38 9.35 0.00 1.90
2084 2211 6.265876 TCCAATCACAATATACATGCTGCATT 59.734 34.615 13.38 7.41 0.00 3.56
2085 2212 5.771165 TCCAATCACAATATACATGCTGCAT 59.229 36.000 9.81 9.81 0.00 3.96
2086 2213 5.131784 TCCAATCACAATATACATGCTGCA 58.868 37.500 4.13 4.13 0.00 4.41
2087 2214 5.471116 TCTCCAATCACAATATACATGCTGC 59.529 40.000 0.00 0.00 0.00 5.25
2088 2215 7.683437 ATCTCCAATCACAATATACATGCTG 57.317 36.000 0.00 0.00 0.00 4.41
2089 2216 7.118825 CGAATCTCCAATCACAATATACATGCT 59.881 37.037 0.00 0.00 0.00 3.79
2090 2217 7.118245 TCGAATCTCCAATCACAATATACATGC 59.882 37.037 0.00 0.00 0.00 4.06
2091 2218 8.538409 TCGAATCTCCAATCACAATATACATG 57.462 34.615 0.00 0.00 0.00 3.21
2104 2231 8.682936 AATGCTTAAGTATTCGAATCTCCAAT 57.317 30.769 15.25 0.00 0.00 3.16
2115 2242 9.855021 ATGGTTGTTACAAATGCTTAAGTATTC 57.145 29.630 17.65 7.03 30.07 1.75
2120 2247 8.647226 GCTTAATGGTTGTTACAAATGCTTAAG 58.353 33.333 17.07 17.07 0.00 1.85
2121 2248 8.144478 TGCTTAATGGTTGTTACAAATGCTTAA 58.856 29.630 0.00 2.17 0.00 1.85
2122 2249 7.661968 TGCTTAATGGTTGTTACAAATGCTTA 58.338 30.769 0.00 0.00 0.00 3.09
2123 2250 6.520272 TGCTTAATGGTTGTTACAAATGCTT 58.480 32.000 0.00 0.00 0.00 3.91
2145 2272 7.331934 TGTTTGTTCTCATCTAGTTACTCATGC 59.668 37.037 0.00 0.00 0.00 4.06
2160 2287 5.070770 ACAATTTGCTGTGTTTGTTCTCA 57.929 34.783 0.00 0.00 0.00 3.27
2183 2310 2.738000 GCCTAGCTGCTCATGGATATCG 60.738 54.545 4.91 0.00 0.00 2.92
2592 2892 8.886719 CAGTAATCTGAGATTAATGTTGCTTGA 58.113 33.333 25.98 0.00 43.76 3.02
2618 2918 3.244044 ACTGCTTCTGTCTGTTCCTCTTC 60.244 47.826 0.00 0.00 0.00 2.87
2781 3094 4.591498 TGGCTGACATACCCGAAAGTATAT 59.409 41.667 0.00 0.00 31.66 0.86
3061 3402 0.539438 AGAAGGCAAATGTTCCGGCA 60.539 50.000 0.00 0.00 0.00 5.69
3364 3707 0.112218 TAGCCCTGCATGGTGTTTGT 59.888 50.000 9.95 0.00 0.00 2.83
3369 3713 1.826720 ACAAAATAGCCCTGCATGGTG 59.173 47.619 9.95 1.50 0.00 4.17
3589 3942 3.729965 ATCTGCAGAAGCTCCCGCG 62.730 63.158 22.50 0.00 42.74 6.46
3698 4051 4.675146 CGATGGTGTTTGGGCAAATCTTAG 60.675 45.833 0.00 0.00 32.36 2.18
3723 4076 1.596260 CGGTCATGATAACTGCTGCAG 59.404 52.381 27.02 27.02 37.52 4.41
3916 4272 2.351276 GGGCAATGTCCTGACGGT 59.649 61.111 0.00 0.00 0.00 4.83
4022 4380 7.307870 GCCAGATATAAGTGCTGAAGAATCAAG 60.308 40.741 0.00 0.00 34.49 3.02
4198 4556 4.095932 TGTCGCGTAGATGTTGTAGAAGAT 59.904 41.667 5.77 0.00 0.00 2.40
4330 4698 5.068198 TGAGCCAGCCAATCAATCTTAATTC 59.932 40.000 0.00 0.00 0.00 2.17
4347 4715 6.145209 CGTTCAGTCTTATATGAATGAGCCAG 59.855 42.308 19.73 9.06 42.48 4.85
4370 4738 1.832167 AAAGCCACCATGGTTGCGT 60.832 52.632 29.43 25.47 41.01 5.24
4445 4813 6.374613 GCTGGTGCCTTTTCTTACTACTAAAT 59.625 38.462 0.00 0.00 0.00 1.40
4464 5142 4.724074 ACATGGTTATCAATTGCTGGTG 57.276 40.909 0.00 0.00 0.00 4.17
4501 5179 4.194640 CCTGAATGGACGAATGAGTGAAT 58.805 43.478 0.00 0.00 38.35 2.57
4552 5230 5.291971 AGCCTGAAACATTGTTTGATTGTC 58.708 37.500 19.03 4.78 0.00 3.18
4619 5297 4.406003 GGGAAGGTAGAACAATGAGAGCTA 59.594 45.833 0.00 0.00 0.00 3.32
4681 5359 3.628487 TGGTCGTTTTGAGGTAACAAAGG 59.372 43.478 0.00 0.00 40.15 3.11
4703 5381 5.107220 GCTGCTATAATTGGTTATACGCGTT 60.107 40.000 20.78 8.23 33.91 4.84
4704 5382 4.387862 GCTGCTATAATTGGTTATACGCGT 59.612 41.667 19.17 19.17 33.91 6.01
4923 5625 6.154445 ACATCATCACTCATTTTCAAAGCAC 58.846 36.000 0.00 0.00 0.00 4.40
4958 5660 4.520492 TGAAGGGAATTCTTCTTGCAAGTC 59.480 41.667 25.19 14.20 42.54 3.01
4993 5696 6.073819 GGCAAAAATACTTGAACGATTGCTTT 60.074 34.615 7.04 0.00 41.11 3.51
5002 5705 5.405935 AGATGGGGCAAAAATACTTGAAC 57.594 39.130 0.00 0.00 0.00 3.18
5047 5768 1.566018 CGGTGTTGAGCGGGTCTTTC 61.566 60.000 8.82 0.14 39.46 2.62
5068 5789 5.181245 GTGCTAGTTCTTCCTATTGCAACAA 59.819 40.000 0.00 0.00 0.00 2.83
5113 5834 4.022676 GGAGGTCTCTTCGGTATGAGATTC 60.023 50.000 0.00 0.00 40.79 2.52
5117 5838 1.957877 GGGAGGTCTCTTCGGTATGAG 59.042 57.143 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.