Multiple sequence alignment - TraesCS1D01G278300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G278300 chr1D 100.000 4086 0 0 1 4086 375940509 375936424 0.000000e+00 7546.0
1 TraesCS1D01G278300 chr1D 100.000 2938 0 0 4439 7376 375936071 375933134 0.000000e+00 5426.0
2 TraesCS1D01G278300 chr1B 93.858 3240 115 41 1 3199 501334580 501331384 0.000000e+00 4804.0
3 TraesCS1D01G278300 chr1B 95.010 982 15 9 5644 6617 501331204 501330249 0.000000e+00 1511.0
4 TraesCS1D01G278300 chr1B 95.461 683 10 3 6600 7264 501329507 501328828 0.000000e+00 1070.0
5 TraesCS1D01G278300 chr1B 94.545 165 6 3 3190 3353 501331362 501331200 1.230000e-62 252.0
6 TraesCS1D01G278300 chr1B 99.130 115 1 0 7262 7376 501328713 501328599 2.700000e-49 207.0
7 TraesCS1D01G278300 chr1A 95.188 2390 82 15 825 3199 474644161 474641790 0.000000e+00 3746.0
8 TraesCS1D01G278300 chr1A 93.597 937 27 11 6462 7376 474640726 474639801 0.000000e+00 1367.0
9 TraesCS1D01G278300 chr1A 94.904 883 23 9 5644 6508 474641512 474640634 0.000000e+00 1362.0
10 TraesCS1D01G278300 chr1A 93.175 674 38 6 3354 4020 113877695 113877023 0.000000e+00 983.0
11 TraesCS1D01G278300 chr1A 96.429 168 5 1 3187 3353 474641675 474641508 7.290000e-70 276.0
12 TraesCS1D01G278300 chr2A 94.741 1179 48 5 4476 5643 485761952 485760777 0.000000e+00 1821.0
13 TraesCS1D01G278300 chr2A 93.405 743 35 6 3353 4086 622984674 622983937 0.000000e+00 1088.0
14 TraesCS1D01G278300 chr2A 82.749 742 109 16 1919 2650 717171802 717171070 1.730000e-180 643.0
15 TraesCS1D01G278300 chr2A 90.782 358 31 2 1019 1375 717173053 717172697 1.860000e-130 477.0
16 TraesCS1D01G278300 chr2A 88.372 215 25 0 2764 2978 717170922 717170708 7.340000e-65 259.0
17 TraesCS1D01G278300 chr2A 89.610 154 16 0 1703 1856 717172505 717172352 5.840000e-46 196.0
18 TraesCS1D01G278300 chr5B 93.657 1214 68 2 4439 5643 176600673 176601886 0.000000e+00 1807.0
19 TraesCS1D01G278300 chr5B 93.152 1212 69 7 4439 5643 43869393 43868189 0.000000e+00 1766.0
20 TraesCS1D01G278300 chr4B 94.005 1201 56 7 4451 5643 634320600 634319408 0.000000e+00 1805.0
21 TraesCS1D01G278300 chr4B 92.749 662 39 5 3353 4007 242731642 242732301 0.000000e+00 948.0
22 TraesCS1D01G278300 chr4B 89.256 726 63 7 3354 4070 484749769 484749050 0.000000e+00 894.0
23 TraesCS1D01G278300 chr3A 94.266 1186 52 7 4476 5649 466049184 466050365 0.000000e+00 1799.0
24 TraesCS1D01G278300 chr3A 94.173 1167 56 3 4476 5631 692352651 692351486 0.000000e+00 1768.0
25 TraesCS1D01G278300 chr3A 91.611 751 43 9 3354 4086 705239844 705239096 0.000000e+00 1020.0
26 TraesCS1D01G278300 chr3A 100.000 36 0 0 4439 4474 466049159 466049194 4.780000e-07 67.6
27 TraesCS1D01G278300 chr3B 93.257 1216 71 3 4439 5643 508753651 508752436 0.000000e+00 1781.0
28 TraesCS1D01G278300 chr3B 92.492 1212 81 6 4439 5643 68496568 68495360 0.000000e+00 1725.0
29 TraesCS1D01G278300 chr2B 92.857 1218 74 5 4439 5643 691252010 691253227 0.000000e+00 1755.0
30 TraesCS1D01G278300 chr2B 87.555 683 31 11 4439 5114 559423979 559423344 0.000000e+00 741.0
31 TraesCS1D01G278300 chr2B 81.879 745 112 15 1919 2650 697442970 697442236 2.280000e-169 606.0
32 TraesCS1D01G278300 chr2B 83.789 512 82 1 5863 6374 697401331 697400821 1.110000e-132 484.0
33 TraesCS1D01G278300 chr2B 83.430 519 76 8 5863 6374 697144543 697144028 2.410000e-129 473.0
34 TraesCS1D01G278300 chr2B 83.205 518 79 7 5863 6374 697258797 697258282 1.120000e-127 468.0
35 TraesCS1D01G278300 chr2B 83.077 520 77 8 5863 6374 697362099 697361583 5.210000e-126 462.0
36 TraesCS1D01G278300 chr2B 83.077 520 77 8 5863 6374 697385219 697384703 5.210000e-126 462.0
37 TraesCS1D01G278300 chr2B 82.852 519 79 8 5863 6374 697343449 697342934 2.430000e-124 457.0
38 TraesCS1D01G278300 chr2B 86.981 361 45 2 1019 1378 697152225 697151866 8.910000e-109 405.0
39 TraesCS1D01G278300 chr2B 86.389 360 47 1 1019 1378 697392910 697392553 6.940000e-105 392.0
40 TraesCS1D01G278300 chr2B 86.111 360 50 0 1019 1378 697332836 697332477 8.970000e-104 388.0
41 TraesCS1D01G278300 chr2B 89.577 307 31 1 1072 1378 697444431 697444126 8.970000e-104 388.0
42 TraesCS1D01G278300 chr2B 85.833 360 51 0 1019 1378 697285395 697285036 4.180000e-102 383.0
43 TraesCS1D01G278300 chr2B 85.278 360 51 1 1019 1378 697351150 697350793 3.250000e-98 370.0
44 TraesCS1D01G278300 chr2B 89.815 216 21 1 2764 2979 697442091 697441877 7.290000e-70 276.0
45 TraesCS1D01G278300 chr2B 95.588 136 6 0 4480 4615 441878979 441878844 1.250000e-52 219.0
46 TraesCS1D01G278300 chr2B 88.344 163 18 1 1698 1859 697443874 697443712 2.100000e-45 195.0
47 TraesCS1D01G278300 chr2B 91.262 103 9 0 1509 1611 697444045 697443943 2.770000e-29 141.0
48 TraesCS1D01G278300 chr4A 93.475 751 30 8 3354 4086 545615536 545616285 0.000000e+00 1098.0
49 TraesCS1D01G278300 chr5A 93.127 742 39 8 3354 4086 13518983 13519721 0.000000e+00 1077.0
50 TraesCS1D01G278300 chrUn 89.892 742 61 6 3354 4086 75632786 75632050 0.000000e+00 942.0
51 TraesCS1D01G278300 chrUn 89.892 742 61 6 3354 4086 186676903 186677639 0.000000e+00 942.0
52 TraesCS1D01G278300 chr2D 83.266 741 106 12 1919 2650 579520059 579519328 0.000000e+00 665.0
53 TraesCS1D01G278300 chr2D 86.160 513 68 3 5863 6374 579518653 579518143 1.080000e-152 551.0
54 TraesCS1D01G278300 chr2D 91.233 365 30 2 1019 1382 579521510 579521147 5.140000e-136 496.0
55 TraesCS1D01G278300 chr2D 91.163 215 19 0 2764 2978 579519180 579518966 7.240000e-75 292.0
56 TraesCS1D01G278300 chr2D 89.308 159 17 0 1698 1856 579520880 579520722 4.510000e-47 200.0
57 TraesCS1D01G278300 chr2D 92.233 103 8 0 1509 1611 579521060 579520958 5.960000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G278300 chr1D 375933134 375940509 7375 True 6486.000000 7546 100.000000 1 7376 2 chr1D.!!$R1 7375
1 TraesCS1D01G278300 chr1B 501328599 501334580 5981 True 1568.800000 4804 95.600800 1 7376 5 chr1B.!!$R1 7375
2 TraesCS1D01G278300 chr1A 474639801 474644161 4360 True 1687.750000 3746 95.029500 825 7376 4 chr1A.!!$R2 6551
3 TraesCS1D01G278300 chr1A 113877023 113877695 672 True 983.000000 983 93.175000 3354 4020 1 chr1A.!!$R1 666
4 TraesCS1D01G278300 chr2A 485760777 485761952 1175 True 1821.000000 1821 94.741000 4476 5643 1 chr2A.!!$R1 1167
5 TraesCS1D01G278300 chr2A 622983937 622984674 737 True 1088.000000 1088 93.405000 3353 4086 1 chr2A.!!$R2 733
6 TraesCS1D01G278300 chr2A 717170708 717173053 2345 True 393.750000 643 87.878250 1019 2978 4 chr2A.!!$R3 1959
7 TraesCS1D01G278300 chr5B 176600673 176601886 1213 False 1807.000000 1807 93.657000 4439 5643 1 chr5B.!!$F1 1204
8 TraesCS1D01G278300 chr5B 43868189 43869393 1204 True 1766.000000 1766 93.152000 4439 5643 1 chr5B.!!$R1 1204
9 TraesCS1D01G278300 chr4B 634319408 634320600 1192 True 1805.000000 1805 94.005000 4451 5643 1 chr4B.!!$R2 1192
10 TraesCS1D01G278300 chr4B 242731642 242732301 659 False 948.000000 948 92.749000 3353 4007 1 chr4B.!!$F1 654
11 TraesCS1D01G278300 chr4B 484749050 484749769 719 True 894.000000 894 89.256000 3354 4070 1 chr4B.!!$R1 716
12 TraesCS1D01G278300 chr3A 692351486 692352651 1165 True 1768.000000 1768 94.173000 4476 5631 1 chr3A.!!$R1 1155
13 TraesCS1D01G278300 chr3A 705239096 705239844 748 True 1020.000000 1020 91.611000 3354 4086 1 chr3A.!!$R2 732
14 TraesCS1D01G278300 chr3A 466049159 466050365 1206 False 933.300000 1799 97.133000 4439 5649 2 chr3A.!!$F1 1210
15 TraesCS1D01G278300 chr3B 508752436 508753651 1215 True 1781.000000 1781 93.257000 4439 5643 1 chr3B.!!$R2 1204
16 TraesCS1D01G278300 chr3B 68495360 68496568 1208 True 1725.000000 1725 92.492000 4439 5643 1 chr3B.!!$R1 1204
17 TraesCS1D01G278300 chr2B 691252010 691253227 1217 False 1755.000000 1755 92.857000 4439 5643 1 chr2B.!!$F1 1204
18 TraesCS1D01G278300 chr2B 559423344 559423979 635 True 741.000000 741 87.555000 4439 5114 1 chr2B.!!$R2 675
19 TraesCS1D01G278300 chr2B 697400821 697401331 510 True 484.000000 484 83.789000 5863 6374 1 chr2B.!!$R13 511
20 TraesCS1D01G278300 chr2B 697144028 697144543 515 True 473.000000 473 83.430000 5863 6374 1 chr2B.!!$R3 511
21 TraesCS1D01G278300 chr2B 697258282 697258797 515 True 468.000000 468 83.205000 5863 6374 1 chr2B.!!$R5 511
22 TraesCS1D01G278300 chr2B 697361583 697362099 516 True 462.000000 462 83.077000 5863 6374 1 chr2B.!!$R10 511
23 TraesCS1D01G278300 chr2B 697384703 697385219 516 True 462.000000 462 83.077000 5863 6374 1 chr2B.!!$R11 511
24 TraesCS1D01G278300 chr2B 697342934 697343449 515 True 457.000000 457 82.852000 5863 6374 1 chr2B.!!$R8 511
25 TraesCS1D01G278300 chr2B 697441877 697444431 2554 True 321.200000 606 88.175400 1072 2979 5 chr2B.!!$R14 1907
26 TraesCS1D01G278300 chr4A 545615536 545616285 749 False 1098.000000 1098 93.475000 3354 4086 1 chr4A.!!$F1 732
27 TraesCS1D01G278300 chr5A 13518983 13519721 738 False 1077.000000 1077 93.127000 3354 4086 1 chr5A.!!$F1 732
28 TraesCS1D01G278300 chrUn 75632050 75632786 736 True 942.000000 942 89.892000 3354 4086 1 chrUn.!!$R1 732
29 TraesCS1D01G278300 chrUn 186676903 186677639 736 False 942.000000 942 89.892000 3354 4086 1 chrUn.!!$F1 732
30 TraesCS1D01G278300 chr2D 579518143 579521510 3367 True 391.833333 665 88.893833 1019 6374 6 chr2D.!!$R1 5355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.108520 TTACACCGACGATGCTTCCC 60.109 55.0 0.00 0.00 0.00 3.97 F
980 1018 0.178973 TTCTCCCACAGTCCACTCGA 60.179 55.0 0.00 0.00 0.00 4.04 F
1490 1529 0.600782 GAGTTTACGAACCGCACCCA 60.601 55.0 0.00 0.00 36.39 4.51 F
1948 2853 0.668401 GGGACAATGTGCTTGCTTGC 60.668 55.0 4.63 0.00 38.50 4.01 F
3639 4834 0.109458 TTCCGGTCATGTCTTCGTCG 60.109 55.0 0.00 0.00 0.00 5.12 F
3871 5066 0.178903 CTATACCTGGCCAGCCCCTA 60.179 60.0 28.39 13.01 34.56 3.53 F
3872 5067 0.473117 TATACCTGGCCAGCCCCTAC 60.473 60.0 28.39 0.00 34.56 3.18 F
5644 8924 0.534873 TCTAGCAGCGCCATAACACA 59.465 50.0 2.29 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2853 1.714899 CCCCTACGAAATGCTTGGCG 61.715 60.000 0.00 0.0 0.00 5.69 R
2649 3576 0.533491 AGCGGAAACATAGGTACGCA 59.467 50.000 20.60 0.0 43.03 5.24 R
3087 4105 1.617947 ATCTCCAAGGAGCGGACACC 61.618 60.000 11.31 0.0 41.71 4.16 R
3786 4981 0.106116 ATCTCCTCCGGGGTGTAGAC 60.106 60.000 0.00 0.0 36.25 2.59 R
5629 8909 0.451383 TGATTGTGTTATGGCGCTGC 59.549 50.000 7.64 0.0 0.00 5.25 R
5731 9011 0.394216 AAAGCGGTGATGCATGGCTA 60.394 50.000 2.46 0.0 37.31 3.93 R
5874 9155 5.298347 GCCTCCAATATACTTGTACCTGTC 58.702 45.833 0.00 0.0 0.00 3.51 R
7242 11322 0.627986 CCTTTTGCCTCCTCTCCCAT 59.372 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.108520 TTACACCGACGATGCTTCCC 60.109 55.000 0.00 0.00 0.00 3.97
42 43 2.017559 GACGATGCTTCCCGCTAGGT 62.018 60.000 0.00 0.00 40.11 3.08
65 66 3.230134 GTCTCTCCTGCTATCATGTCCT 58.770 50.000 0.00 0.00 0.00 3.85
107 108 2.040544 GTGCTTGGGTCGTGATGGG 61.041 63.158 0.00 0.00 0.00 4.00
133 134 7.780008 TTTTCTCGTGAATCAACTGTCTTTA 57.220 32.000 0.02 0.00 31.56 1.85
160 161 2.777692 TCTCAGAGTGACCCCTTGTTTT 59.222 45.455 0.00 0.00 0.00 2.43
162 163 2.777692 TCAGAGTGACCCCTTGTTTTCT 59.222 45.455 0.00 0.00 0.00 2.52
163 164 3.202151 TCAGAGTGACCCCTTGTTTTCTT 59.798 43.478 0.00 0.00 0.00 2.52
167 168 1.856920 TGACCCCTTGTTTTCTTCCCT 59.143 47.619 0.00 0.00 0.00 4.20
206 220 4.619336 TGCGTGTGTTTCTTTTGTCTTTTC 59.381 37.500 0.00 0.00 0.00 2.29
208 222 5.003496 GCGTGTGTTTCTTTTGTCTTTTCTC 59.997 40.000 0.00 0.00 0.00 2.87
212 226 5.516696 GTGTTTCTTTTGTCTTTTCTCCTGC 59.483 40.000 0.00 0.00 0.00 4.85
256 270 8.668510 TTCATTTGAACATCTCTTATAGAGGC 57.331 34.615 4.03 0.00 42.54 4.70
257 271 8.027524 TCATTTGAACATCTCTTATAGAGGCT 57.972 34.615 4.03 0.00 42.54 4.58
258 272 7.930325 TCATTTGAACATCTCTTATAGAGGCTG 59.070 37.037 0.00 5.17 42.54 4.85
259 273 5.207110 TGAACATCTCTTATAGAGGCTGC 57.793 43.478 0.00 0.00 42.54 5.25
260 274 4.651045 TGAACATCTCTTATAGAGGCTGCA 59.349 41.667 0.50 0.00 42.54 4.41
261 275 5.129320 TGAACATCTCTTATAGAGGCTGCAA 59.871 40.000 0.50 0.00 42.54 4.08
300 315 9.730420 AACTACAAATGAAAAATATCCGCATAC 57.270 29.630 0.00 0.00 0.00 2.39
325 340 6.816640 CGGATTTACTCTCTGTGACCATTAAA 59.183 38.462 0.00 0.00 0.00 1.52
326 341 7.333423 CGGATTTACTCTCTGTGACCATTAAAA 59.667 37.037 0.00 0.00 0.00 1.52
356 371 7.533426 AGAGTTTGCTTGCAATACTTATTCAG 58.467 34.615 8.93 0.00 0.00 3.02
358 373 7.885297 AGTTTGCTTGCAATACTTATTCAGAA 58.115 30.769 8.93 0.00 0.00 3.02
363 378 9.709495 TGCTTGCAATACTTATTCAGAATTTTT 57.291 25.926 0.00 0.00 0.00 1.94
386 401 3.983741 TCAAAATGGAAAAATTCGGCGT 58.016 36.364 6.85 0.00 0.00 5.68
387 402 3.984633 TCAAAATGGAAAAATTCGGCGTC 59.015 39.130 6.85 0.00 0.00 5.19
405 420 2.046507 GGACTCAGGCCAGCACAG 60.047 66.667 5.01 0.00 0.00 3.66
407 422 4.694233 ACTCAGGCCAGCACAGCG 62.694 66.667 5.01 0.00 0.00 5.18
429 444 4.380087 CGCACACACGAGAGAATATCATAC 59.620 45.833 0.00 0.00 34.06 2.39
436 451 5.629849 CACGAGAGAATATCATACGGAAACC 59.370 44.000 0.00 0.00 0.00 3.27
451 466 3.117794 GGAAACCAGTTGCGGTAAAAAC 58.882 45.455 0.00 0.00 38.76 2.43
458 473 4.987912 CCAGTTGCGGTAAAAACAAATGAT 59.012 37.500 4.20 0.00 40.71 2.45
459 474 5.465056 CCAGTTGCGGTAAAAACAAATGATT 59.535 36.000 4.20 0.00 40.71 2.57
540 562 6.423776 ACACATGAAATTCCAGGTTCAAAT 57.576 33.333 0.00 0.00 37.31 2.32
542 564 7.605449 ACACATGAAATTCCAGGTTCAAATAG 58.395 34.615 0.00 0.00 37.31 1.73
633 657 1.208535 ACGATCTTATTTGTGGGGCGA 59.791 47.619 0.00 0.00 0.00 5.54
640 664 1.789576 ATTTGTGGGGCGAAGGGAGT 61.790 55.000 0.00 0.00 0.00 3.85
641 665 1.128809 TTTGTGGGGCGAAGGGAGTA 61.129 55.000 0.00 0.00 0.00 2.59
642 666 1.128809 TTGTGGGGCGAAGGGAGTAA 61.129 55.000 0.00 0.00 0.00 2.24
643 667 0.912487 TGTGGGGCGAAGGGAGTAAT 60.912 55.000 0.00 0.00 0.00 1.89
644 668 1.125633 GTGGGGCGAAGGGAGTAATA 58.874 55.000 0.00 0.00 0.00 0.98
645 669 1.487558 GTGGGGCGAAGGGAGTAATAA 59.512 52.381 0.00 0.00 0.00 1.40
646 670 2.092807 GTGGGGCGAAGGGAGTAATAAA 60.093 50.000 0.00 0.00 0.00 1.40
647 671 2.781174 TGGGGCGAAGGGAGTAATAAAT 59.219 45.455 0.00 0.00 0.00 1.40
648 672 3.975312 TGGGGCGAAGGGAGTAATAAATA 59.025 43.478 0.00 0.00 0.00 1.40
649 673 4.041198 TGGGGCGAAGGGAGTAATAAATAG 59.959 45.833 0.00 0.00 0.00 1.73
650 674 4.041321 GGGGCGAAGGGAGTAATAAATAGT 59.959 45.833 0.00 0.00 0.00 2.12
651 675 5.455755 GGGGCGAAGGGAGTAATAAATAGTT 60.456 44.000 0.00 0.00 0.00 2.24
652 676 5.469084 GGGCGAAGGGAGTAATAAATAGTTG 59.531 44.000 0.00 0.00 0.00 3.16
653 677 6.053650 GGCGAAGGGAGTAATAAATAGTTGT 58.946 40.000 0.00 0.00 0.00 3.32
654 678 6.018180 GGCGAAGGGAGTAATAAATAGTTGTG 60.018 42.308 0.00 0.00 0.00 3.33
655 679 6.018180 GCGAAGGGAGTAATAAATAGTTGTGG 60.018 42.308 0.00 0.00 0.00 4.17
679 703 9.295825 TGGAACAGTAAATGTCACTATTCATTT 57.704 29.630 7.95 7.95 43.00 2.32
759 787 9.289782 GCTAATTGAATATCACCCTCTTAACAT 57.710 33.333 0.00 0.00 0.00 2.71
805 833 5.645929 ACGTGGTCTTTGTATTATCATTGCA 59.354 36.000 0.00 0.00 0.00 4.08
807 835 6.468956 CGTGGTCTTTGTATTATCATTGCAAC 59.531 38.462 0.00 0.00 0.00 4.17
808 836 7.538575 GTGGTCTTTGTATTATCATTGCAACT 58.461 34.615 0.00 0.00 0.00 3.16
809 837 8.028938 GTGGTCTTTGTATTATCATTGCAACTT 58.971 33.333 0.00 0.00 0.00 2.66
959 997 0.902516 GCCAGCCCGATCTATCTCCT 60.903 60.000 0.00 0.00 0.00 3.69
980 1018 0.178973 TTCTCCCACAGTCCACTCGA 60.179 55.000 0.00 0.00 0.00 4.04
1272 1310 4.507916 CTCGCCCTCTCCTCCCGA 62.508 72.222 0.00 0.00 0.00 5.14
1490 1529 0.600782 GAGTTTACGAACCGCACCCA 60.601 55.000 0.00 0.00 36.39 4.51
1491 1530 0.881600 AGTTTACGAACCGCACCCAC 60.882 55.000 0.00 0.00 36.39 4.61
1619 1696 4.611366 GTCGCCGTGAGTAAAAATTCAAAG 59.389 41.667 0.00 0.00 0.00 2.77
1780 1862 2.835701 ATCGTGCGCTCGTTGACCAT 62.836 55.000 28.33 12.85 0.00 3.55
1856 1938 2.062971 TCCTCGCTTCGGTTAGGTAT 57.937 50.000 0.00 0.00 0.00 2.73
1858 1940 2.360165 TCCTCGCTTCGGTTAGGTATTC 59.640 50.000 0.00 0.00 0.00 1.75
1862 1947 2.159142 CGCTTCGGTTAGGTATTCCAGT 60.159 50.000 0.00 0.00 35.89 4.00
1863 1948 3.195661 GCTTCGGTTAGGTATTCCAGTG 58.804 50.000 0.00 0.00 35.89 3.66
1865 1950 2.823959 TCGGTTAGGTATTCCAGTGGT 58.176 47.619 9.54 0.00 35.89 4.16
1870 1960 5.011738 CGGTTAGGTATTCCAGTGGTGATAT 59.988 44.000 9.54 1.92 35.89 1.63
1884 2778 7.254658 CCAGTGGTGATATTGTAATTTCCGTAC 60.255 40.741 0.00 0.00 0.00 3.67
1948 2853 0.668401 GGGACAATGTGCTTGCTTGC 60.668 55.000 4.63 0.00 38.50 4.01
1979 2884 1.910580 CGTAGGGGATGGTGGCACTT 61.911 60.000 18.45 5.40 0.00 3.16
2283 3205 0.923358 TTCAGGGGTTTGTGGTGTCT 59.077 50.000 0.00 0.00 0.00 3.41
2649 3576 4.082245 GGTTGTAAGGTAGCATGCATGTTT 60.082 41.667 26.79 17.76 0.00 2.83
2720 3650 8.687242 TCTTCTGTTTCTATCGTCTCACATATT 58.313 33.333 0.00 0.00 0.00 1.28
2721 3651 8.634475 TTCTGTTTCTATCGTCTCACATATTG 57.366 34.615 0.00 0.00 0.00 1.90
2722 3652 7.203218 TCTGTTTCTATCGTCTCACATATTGG 58.797 38.462 0.00 0.00 0.00 3.16
2723 3653 6.873997 TGTTTCTATCGTCTCACATATTGGT 58.126 36.000 0.00 0.00 0.00 3.67
2724 3654 6.756542 TGTTTCTATCGTCTCACATATTGGTG 59.243 38.462 0.00 0.00 40.16 4.17
2725 3655 6.709018 TTCTATCGTCTCACATATTGGTGA 57.291 37.500 0.00 0.00 45.06 4.02
2741 3671 2.769663 TGGTGAGTGGTGACCATATACC 59.230 50.000 20.34 20.34 37.32 2.73
3000 3988 2.686915 ACTCAGCTTTGCAGGAATATGC 59.313 45.455 0.00 0.00 46.68 3.14
3056 4072 3.441572 CCAATGCCTTGGTACTGAAGAAG 59.558 47.826 12.27 0.00 45.90 2.85
3302 4497 5.860941 TTACCATTTGAGAGCCAAACAAA 57.139 34.783 0.00 0.00 46.41 2.83
3489 4684 9.928618 CTCTATATAAAGAGAGGGGATGTATCA 57.071 37.037 0.00 0.00 44.93 2.15
3493 4688 9.796242 ATATAAAGAGAGGGGATGTATCAATCT 57.204 33.333 0.00 0.00 0.00 2.40
3495 4690 7.937700 AAAGAGAGGGGATGTATCAATCTAA 57.062 36.000 0.00 0.00 0.00 2.10
3496 4691 8.517323 AAAGAGAGGGGATGTATCAATCTAAT 57.483 34.615 0.00 0.00 0.00 1.73
3497 4692 7.732222 AGAGAGGGGATGTATCAATCTAATC 57.268 40.000 0.00 0.00 0.00 1.75
3498 4693 7.251936 AGAGAGGGGATGTATCAATCTAATCA 58.748 38.462 0.00 0.00 0.00 2.57
3499 4694 7.736691 AGAGAGGGGATGTATCAATCTAATCAA 59.263 37.037 0.00 0.00 0.00 2.57
3500 4695 7.915930 AGAGGGGATGTATCAATCTAATCAAG 58.084 38.462 0.00 0.00 0.00 3.02
3501 4696 6.479884 AGGGGATGTATCAATCTAATCAAGC 58.520 40.000 0.00 0.00 0.00 4.01
3502 4697 6.044754 AGGGGATGTATCAATCTAATCAAGCA 59.955 38.462 0.00 0.00 0.00 3.91
3503 4698 6.716628 GGGGATGTATCAATCTAATCAAGCAA 59.283 38.462 0.00 0.00 0.00 3.91
3504 4699 7.094463 GGGGATGTATCAATCTAATCAAGCAAG 60.094 40.741 0.00 0.00 0.00 4.01
3505 4700 7.663081 GGGATGTATCAATCTAATCAAGCAAGA 59.337 37.037 0.00 0.00 0.00 3.02
3506 4701 9.060347 GGATGTATCAATCTAATCAAGCAAGAA 57.940 33.333 0.00 0.00 0.00 2.52
3516 4711 9.911788 ATCTAATCAAGCAAGAATTAAGAAGGA 57.088 29.630 0.00 0.00 0.00 3.36
3517 4712 9.739276 TCTAATCAAGCAAGAATTAAGAAGGAA 57.261 29.630 0.00 0.00 0.00 3.36
3520 4715 9.866798 AATCAAGCAAGAATTAAGAAGGAAATC 57.133 29.630 0.00 0.00 0.00 2.17
3521 4716 7.830739 TCAAGCAAGAATTAAGAAGGAAATCC 58.169 34.615 0.00 0.00 0.00 3.01
3522 4717 6.782082 AGCAAGAATTAAGAAGGAAATCCC 57.218 37.500 0.00 0.00 36.42 3.85
3534 4729 1.769026 GAAATCCCTTCCCTCTTGCC 58.231 55.000 0.00 0.00 0.00 4.52
3535 4730 0.336392 AAATCCCTTCCCTCTTGCCC 59.664 55.000 0.00 0.00 0.00 5.36
3536 4731 1.926426 AATCCCTTCCCTCTTGCCCG 61.926 60.000 0.00 0.00 0.00 6.13
3537 4732 4.115199 CCCTTCCCTCTTGCCCGG 62.115 72.222 0.00 0.00 0.00 5.73
3538 4733 4.803908 CCTTCCCTCTTGCCCGGC 62.804 72.222 1.04 1.04 0.00 6.13
3539 4734 4.803908 CTTCCCTCTTGCCCGGCC 62.804 72.222 7.03 0.00 0.00 6.13
3582 4777 4.214327 CCTCTCGCGCCCTCCTTC 62.214 72.222 0.00 0.00 0.00 3.46
3583 4778 3.144193 CTCTCGCGCCCTCCTTCT 61.144 66.667 0.00 0.00 0.00 2.85
3584 4779 1.824329 CTCTCGCGCCCTCCTTCTA 60.824 63.158 0.00 0.00 0.00 2.10
3585 4780 1.791103 CTCTCGCGCCCTCCTTCTAG 61.791 65.000 0.00 0.00 0.00 2.43
3586 4781 3.492311 CTCGCGCCCTCCTTCTAGC 62.492 68.421 0.00 0.00 0.00 3.42
3587 4782 3.838271 CGCGCCCTCCTTCTAGCA 61.838 66.667 0.00 0.00 0.00 3.49
3588 4783 2.107953 GCGCCCTCCTTCTAGCAG 59.892 66.667 0.00 0.00 0.00 4.24
3589 4784 2.107953 CGCCCTCCTTCTAGCAGC 59.892 66.667 0.00 0.00 0.00 5.25
3590 4785 2.107953 GCCCTCCTTCTAGCAGCG 59.892 66.667 0.00 0.00 0.00 5.18
3591 4786 2.107953 CCCTCCTTCTAGCAGCGC 59.892 66.667 0.00 0.00 0.00 5.92
3592 4787 2.107953 CCTCCTTCTAGCAGCGCC 59.892 66.667 2.29 0.00 0.00 6.53
3593 4788 2.725312 CCTCCTTCTAGCAGCGCCA 61.725 63.158 2.29 0.00 0.00 5.69
3594 4789 1.445095 CTCCTTCTAGCAGCGCCAT 59.555 57.895 2.29 0.00 0.00 4.40
3595 4790 0.676184 CTCCTTCTAGCAGCGCCATA 59.324 55.000 2.29 0.00 0.00 2.74
3596 4791 1.069204 CTCCTTCTAGCAGCGCCATAA 59.931 52.381 2.29 0.00 0.00 1.90
3597 4792 1.202533 TCCTTCTAGCAGCGCCATAAC 60.203 52.381 2.29 0.00 0.00 1.89
3598 4793 1.473257 CCTTCTAGCAGCGCCATAACA 60.473 52.381 2.29 0.00 0.00 2.41
3599 4794 2.279741 CTTCTAGCAGCGCCATAACAA 58.720 47.619 2.29 0.00 0.00 2.83
3600 4795 2.620251 TCTAGCAGCGCCATAACAAT 57.380 45.000 2.29 0.00 0.00 2.71
3601 4796 2.917933 TCTAGCAGCGCCATAACAATT 58.082 42.857 2.29 0.00 0.00 2.32
3602 4797 3.278574 TCTAGCAGCGCCATAACAATTT 58.721 40.909 2.29 0.00 0.00 1.82
3603 4798 2.282701 AGCAGCGCCATAACAATTTG 57.717 45.000 2.29 0.00 0.00 2.32
3604 4799 1.135024 AGCAGCGCCATAACAATTTGG 60.135 47.619 2.29 0.00 36.03 3.28
3605 4800 1.404047 GCAGCGCCATAACAATTTGGT 60.404 47.619 2.29 0.00 35.34 3.67
3606 4801 2.159310 GCAGCGCCATAACAATTTGGTA 60.159 45.455 2.29 0.00 35.34 3.25
3607 4802 3.490761 GCAGCGCCATAACAATTTGGTAT 60.491 43.478 2.29 0.95 35.34 2.73
3608 4803 4.290155 CAGCGCCATAACAATTTGGTATC 58.710 43.478 2.29 0.00 35.34 2.24
3609 4804 3.951037 AGCGCCATAACAATTTGGTATCA 59.049 39.130 2.29 0.00 35.34 2.15
3610 4805 4.036734 AGCGCCATAACAATTTGGTATCAG 59.963 41.667 2.29 1.10 35.34 2.90
3611 4806 4.792704 GCGCCATAACAATTTGGTATCAGG 60.793 45.833 3.93 5.41 35.34 3.86
3612 4807 4.338118 CGCCATAACAATTTGGTATCAGGT 59.662 41.667 3.93 0.00 35.34 4.00
3613 4808 5.529430 CGCCATAACAATTTGGTATCAGGTA 59.471 40.000 3.93 0.00 35.34 3.08
3614 4809 6.293407 CGCCATAACAATTTGGTATCAGGTAG 60.293 42.308 3.93 0.71 35.34 3.18
3615 4810 6.515035 GCCATAACAATTTGGTATCAGGTAGC 60.515 42.308 3.93 0.00 35.34 3.58
3616 4811 6.772716 CCATAACAATTTGGTATCAGGTAGCT 59.227 38.462 3.93 0.00 25.15 3.32
3617 4812 7.041098 CCATAACAATTTGGTATCAGGTAGCTC 60.041 40.741 3.93 0.00 25.15 4.09
3618 4813 5.435686 ACAATTTGGTATCAGGTAGCTCA 57.564 39.130 0.00 0.00 0.00 4.26
3619 4814 5.431765 ACAATTTGGTATCAGGTAGCTCAG 58.568 41.667 0.00 0.00 0.00 3.35
3620 4815 5.045578 ACAATTTGGTATCAGGTAGCTCAGT 60.046 40.000 0.00 0.00 0.00 3.41
3621 4816 5.700402 ATTTGGTATCAGGTAGCTCAGTT 57.300 39.130 0.00 0.00 0.00 3.16
3622 4817 4.737855 TTGGTATCAGGTAGCTCAGTTC 57.262 45.455 0.00 0.00 0.00 3.01
3623 4818 3.031736 TGGTATCAGGTAGCTCAGTTCC 58.968 50.000 0.00 0.00 0.00 3.62
3624 4819 2.034812 GGTATCAGGTAGCTCAGTTCCG 59.965 54.545 0.00 0.00 0.00 4.30
3625 4820 1.115467 ATCAGGTAGCTCAGTTCCGG 58.885 55.000 0.00 0.00 0.00 5.14
3626 4821 0.251653 TCAGGTAGCTCAGTTCCGGT 60.252 55.000 0.00 0.00 0.00 5.28
3627 4822 0.173708 CAGGTAGCTCAGTTCCGGTC 59.826 60.000 0.00 0.00 0.00 4.79
3628 4823 0.251653 AGGTAGCTCAGTTCCGGTCA 60.252 55.000 0.00 0.00 0.00 4.02
3629 4824 0.824759 GGTAGCTCAGTTCCGGTCAT 59.175 55.000 0.00 0.00 0.00 3.06
3630 4825 1.471676 GGTAGCTCAGTTCCGGTCATG 60.472 57.143 0.00 0.00 0.00 3.07
3631 4826 1.204941 GTAGCTCAGTTCCGGTCATGT 59.795 52.381 0.00 0.00 0.00 3.21
3632 4827 0.247736 AGCTCAGTTCCGGTCATGTC 59.752 55.000 0.00 0.00 0.00 3.06
3633 4828 0.247736 GCTCAGTTCCGGTCATGTCT 59.752 55.000 0.00 0.00 0.00 3.41
3634 4829 1.338200 GCTCAGTTCCGGTCATGTCTT 60.338 52.381 0.00 0.00 0.00 3.01
3635 4830 2.611518 CTCAGTTCCGGTCATGTCTTC 58.388 52.381 0.00 0.00 0.00 2.87
3636 4831 1.067846 TCAGTTCCGGTCATGTCTTCG 60.068 52.381 0.00 0.00 0.00 3.79
3637 4832 0.966920 AGTTCCGGTCATGTCTTCGT 59.033 50.000 0.00 0.00 0.00 3.85
3638 4833 1.067776 AGTTCCGGTCATGTCTTCGTC 60.068 52.381 0.00 0.00 0.00 4.20
3639 4834 0.109458 TTCCGGTCATGTCTTCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
3640 4835 2.158959 CCGGTCATGTCTTCGTCGC 61.159 63.158 0.00 0.00 0.00 5.19
3641 4836 2.158959 CGGTCATGTCTTCGTCGCC 61.159 63.158 0.00 0.00 0.00 5.54
3642 4837 2.158959 GGTCATGTCTTCGTCGCCG 61.159 63.158 0.00 0.00 0.00 6.46
3643 4838 2.506217 TCATGTCTTCGTCGCCGC 60.506 61.111 0.00 0.00 0.00 6.53
3644 4839 3.554692 CATGTCTTCGTCGCCGCC 61.555 66.667 0.00 0.00 0.00 6.13
3645 4840 4.814294 ATGTCTTCGTCGCCGCCC 62.814 66.667 0.00 0.00 0.00 6.13
3698 4893 2.897350 GCCGCTGGCCATCTACAC 60.897 66.667 5.51 0.00 44.06 2.90
3699 4894 2.203070 CCGCTGGCCATCTACACC 60.203 66.667 5.51 0.00 0.00 4.16
3700 4895 2.586079 CGCTGGCCATCTACACCG 60.586 66.667 5.51 0.00 0.00 4.94
3701 4896 2.897350 GCTGGCCATCTACACCGC 60.897 66.667 5.51 0.00 0.00 5.68
3702 4897 2.586079 CTGGCCATCTACACCGCG 60.586 66.667 5.51 0.00 0.00 6.46
3703 4898 4.830765 TGGCCATCTACACCGCGC 62.831 66.667 0.00 0.00 0.00 6.86
3707 4902 4.873129 CATCTACACCGCGCCGCT 62.873 66.667 7.78 0.00 0.00 5.52
3708 4903 4.873129 ATCTACACCGCGCCGCTG 62.873 66.667 7.78 2.33 0.00 5.18
3741 4936 4.899239 CCGCTGGTCGCATCCTCC 62.899 72.222 0.00 0.00 39.08 4.30
3743 4938 4.899239 GCTGGTCGCATCCTCCGG 62.899 72.222 0.00 0.00 38.92 5.14
3744 4939 4.899239 CTGGTCGCATCCTCCGGC 62.899 72.222 0.00 0.00 0.00 6.13
3765 4960 4.175337 GCTACCGCCCAGATGCCA 62.175 66.667 0.00 0.00 0.00 4.92
3766 4961 2.109799 CTACCGCCCAGATGCCAG 59.890 66.667 0.00 0.00 0.00 4.85
3767 4962 4.175337 TACCGCCCAGATGCCAGC 62.175 66.667 0.00 0.00 0.00 4.85
3790 4985 3.687102 CCACCGCACCACCGTCTA 61.687 66.667 0.00 0.00 0.00 2.59
3791 4986 2.431942 CACCGCACCACCGTCTAC 60.432 66.667 0.00 0.00 0.00 2.59
3792 4987 2.913578 ACCGCACCACCGTCTACA 60.914 61.111 0.00 0.00 0.00 2.74
3793 4988 2.431942 CCGCACCACCGTCTACAC 60.432 66.667 0.00 0.00 0.00 2.90
3794 4989 2.431942 CGCACCACCGTCTACACC 60.432 66.667 0.00 0.00 0.00 4.16
3795 4990 2.047560 GCACCACCGTCTACACCC 60.048 66.667 0.00 0.00 0.00 4.61
3796 4991 2.660802 CACCACCGTCTACACCCC 59.339 66.667 0.00 0.00 0.00 4.95
3797 4992 2.993264 ACCACCGTCTACACCCCG 60.993 66.667 0.00 0.00 0.00 5.73
3798 4993 3.766691 CCACCGTCTACACCCCGG 61.767 72.222 0.00 0.00 46.93 5.73
3799 4994 2.677524 CACCGTCTACACCCCGGA 60.678 66.667 0.73 0.00 44.41 5.14
3800 4995 2.362120 ACCGTCTACACCCCGGAG 60.362 66.667 0.73 0.00 44.41 4.63
3813 5008 3.227276 CGGAGGAGATCACCGGGG 61.227 72.222 6.32 0.00 42.48 5.73
3814 5009 2.041819 GGAGGAGATCACCGGGGT 60.042 66.667 2.12 0.00 34.73 4.95
3815 5010 2.134933 GGAGGAGATCACCGGGGTC 61.135 68.421 2.12 0.00 34.73 4.46
3816 5011 2.041819 AGGAGATCACCGGGGTCC 60.042 66.667 2.12 2.98 34.73 4.46
3817 5012 2.041819 GGAGATCACCGGGGTCCT 60.042 66.667 2.12 1.06 0.00 3.85
3818 5013 2.134933 GGAGATCACCGGGGTCCTC 61.135 68.421 16.29 16.29 0.00 3.71
3819 5014 1.381327 GAGATCACCGGGGTCCTCA 60.381 63.158 18.61 0.00 0.00 3.86
3820 5015 0.976073 GAGATCACCGGGGTCCTCAA 60.976 60.000 18.61 0.00 0.00 3.02
3821 5016 0.326618 AGATCACCGGGGTCCTCAAT 60.327 55.000 2.12 0.00 0.00 2.57
3822 5017 0.179045 GATCACCGGGGTCCTCAATG 60.179 60.000 2.12 0.00 0.00 2.82
3823 5018 1.635817 ATCACCGGGGTCCTCAATGG 61.636 60.000 2.12 0.00 37.10 3.16
3824 5019 3.728373 ACCGGGGTCCTCAATGGC 61.728 66.667 6.32 0.00 35.26 4.40
3825 5020 4.506255 CCGGGGTCCTCAATGGCC 62.506 72.222 0.00 0.00 35.26 5.36
3826 5021 3.411517 CGGGGTCCTCAATGGCCT 61.412 66.667 3.32 0.00 34.05 5.19
3827 5022 2.597903 GGGGTCCTCAATGGCCTC 59.402 66.667 3.32 0.00 34.05 4.70
3828 5023 2.190578 GGGTCCTCAATGGCCTCG 59.809 66.667 3.32 0.00 34.05 4.63
3829 5024 2.670148 GGGTCCTCAATGGCCTCGT 61.670 63.158 3.32 0.00 34.05 4.18
3830 5025 1.153349 GGTCCTCAATGGCCTCGTC 60.153 63.158 3.32 0.00 35.26 4.20
3831 5026 1.596934 GTCCTCAATGGCCTCGTCA 59.403 57.895 3.32 0.00 35.26 4.35
3832 5027 0.741221 GTCCTCAATGGCCTCGTCAC 60.741 60.000 3.32 0.00 35.26 3.67
3833 5028 1.191489 TCCTCAATGGCCTCGTCACA 61.191 55.000 3.32 0.00 35.26 3.58
3834 5029 0.742281 CCTCAATGGCCTCGTCACAG 60.742 60.000 3.32 0.00 0.00 3.66
3835 5030 1.364626 CTCAATGGCCTCGTCACAGC 61.365 60.000 3.32 0.00 0.00 4.40
3841 5036 3.680786 CCTCGTCACAGCCGTCCA 61.681 66.667 0.00 0.00 0.00 4.02
3842 5037 2.126307 CTCGTCACAGCCGTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
3843 5038 3.633094 CTCGTCACAGCCGTCCAGG 62.633 68.421 0.00 0.00 44.97 4.45
3844 5039 4.742201 CGTCACAGCCGTCCAGGG 62.742 72.222 0.00 0.00 41.48 4.45
3845 5040 4.394712 GTCACAGCCGTCCAGGGG 62.395 72.222 0.00 0.00 41.48 4.79
3846 5041 4.631740 TCACAGCCGTCCAGGGGA 62.632 66.667 0.00 0.00 41.48 4.81
3847 5042 3.402681 CACAGCCGTCCAGGGGAT 61.403 66.667 0.00 0.00 41.48 3.85
3848 5043 3.083997 ACAGCCGTCCAGGGGATC 61.084 66.667 0.00 0.00 41.48 3.36
3849 5044 3.866582 CAGCCGTCCAGGGGATCC 61.867 72.222 1.92 1.92 41.48 3.36
3854 5049 2.122989 GTCCAGGGGATCCGGCTA 60.123 66.667 5.45 0.00 38.33 3.93
3855 5050 1.536662 GTCCAGGGGATCCGGCTAT 60.537 63.158 5.45 0.00 38.33 2.97
3856 5051 0.252103 GTCCAGGGGATCCGGCTATA 60.252 60.000 5.45 0.00 38.33 1.31
3857 5052 0.252103 TCCAGGGGATCCGGCTATAC 60.252 60.000 5.45 0.00 38.33 1.47
3858 5053 1.265454 CCAGGGGATCCGGCTATACC 61.265 65.000 5.45 0.00 38.33 2.73
3859 5054 0.252284 CAGGGGATCCGGCTATACCT 60.252 60.000 5.45 1.27 38.33 3.08
3860 5055 0.252284 AGGGGATCCGGCTATACCTG 60.252 60.000 5.45 0.00 38.33 4.00
3861 5056 1.265454 GGGGATCCGGCTATACCTGG 61.265 65.000 5.45 0.00 35.61 4.45
3862 5057 1.597461 GGATCCGGCTATACCTGGC 59.403 63.158 0.00 0.00 35.61 4.85
3863 5058 1.597461 GATCCGGCTATACCTGGCC 59.403 63.158 0.00 0.00 45.20 5.36
3868 5063 2.432123 GCTATACCTGGCCAGCCC 59.568 66.667 28.39 6.98 34.56 5.19
3869 5064 3.161557 CTATACCTGGCCAGCCCC 58.838 66.667 28.39 0.00 34.56 5.80
3870 5065 1.462238 CTATACCTGGCCAGCCCCT 60.462 63.158 28.39 13.30 34.56 4.79
3871 5066 0.178903 CTATACCTGGCCAGCCCCTA 60.179 60.000 28.39 13.01 34.56 3.53
3872 5067 0.473117 TATACCTGGCCAGCCCCTAC 60.473 60.000 28.39 0.00 34.56 3.18
3903 5098 4.641645 CCCTGCTGTTGACCGCCA 62.642 66.667 0.00 0.00 0.00 5.69
3904 5099 3.357079 CCTGCTGTTGACCGCCAC 61.357 66.667 0.00 0.00 0.00 5.01
3905 5100 3.357079 CTGCTGTTGACCGCCACC 61.357 66.667 0.00 0.00 0.00 4.61
3934 5129 4.468689 GGCCCTGCCGTGGTACTC 62.469 72.222 0.00 0.00 39.62 2.59
3935 5130 4.814294 GCCCTGCCGTGGTACTCG 62.814 72.222 0.00 0.00 45.50 4.18
3936 5131 4.814294 CCCTGCCGTGGTACTCGC 62.814 72.222 0.00 0.00 44.50 5.03
3937 5132 4.814294 CCTGCCGTGGTACTCGCC 62.814 72.222 0.00 0.00 44.50 5.54
3941 5136 4.508128 CCGTGGTACTCGCCGCAT 62.508 66.667 0.00 0.00 44.50 4.73
3942 5137 2.954868 CGTGGTACTCGCCGCATC 60.955 66.667 0.00 0.00 38.81 3.91
3943 5138 2.585247 GTGGTACTCGCCGCATCC 60.585 66.667 0.00 0.00 38.79 3.51
3944 5139 3.071837 TGGTACTCGCCGCATCCA 61.072 61.111 0.00 0.00 0.00 3.41
3945 5140 2.279517 GGTACTCGCCGCATCCAG 60.280 66.667 0.00 0.00 0.00 3.86
3946 5141 2.279517 GTACTCGCCGCATCCAGG 60.280 66.667 0.00 0.00 0.00 4.45
3947 5142 3.536917 TACTCGCCGCATCCAGGG 61.537 66.667 0.00 0.00 0.00 4.45
3974 5169 3.869272 GCATTCGCTGGGACGCTG 61.869 66.667 7.74 2.16 34.30 5.18
3975 5170 2.434884 CATTCGCTGGGACGCTGT 60.435 61.111 0.00 0.00 0.00 4.40
3976 5171 2.034879 CATTCGCTGGGACGCTGTT 61.035 57.895 0.00 0.00 0.00 3.16
3977 5172 2.034879 ATTCGCTGGGACGCTGTTG 61.035 57.895 0.00 0.00 0.00 3.33
3989 5184 3.371063 CTGTTGCCCCAGCTGCAG 61.371 66.667 10.11 10.11 40.35 4.41
4778 5983 4.758251 TGCGGGAGATGCGTGGTG 62.758 66.667 0.00 0.00 34.24 4.17
5155 6366 2.936202 ACACATGCACTCCTTTTGTCT 58.064 42.857 0.00 0.00 0.00 3.41
5233 6444 3.955551 GGTGTCCACTTTTTGTTAAGGGA 59.044 43.478 0.00 0.00 29.76 4.20
5252 6463 2.032924 GGATCCAAAATAAAGCGTCCCG 59.967 50.000 6.95 0.00 0.00 5.14
5333 6544 1.210870 TAGGTTTGTGTTGCGTCGAC 58.789 50.000 5.18 5.18 0.00 4.20
5465 6678 7.921745 GGTTAATTAGAGATAAGAGTCGCTTGT 59.078 37.037 0.00 0.00 37.42 3.16
5548 6761 9.228949 GGAGATGTATCAATCTAATCAAGCAAT 57.771 33.333 0.00 0.00 37.03 3.56
5626 8906 4.214327 CCTCTCGCGCCCTCCTTC 62.214 72.222 0.00 0.00 0.00 3.46
5627 8907 3.144193 CTCTCGCGCCCTCCTTCT 61.144 66.667 0.00 0.00 0.00 2.85
5628 8908 1.824329 CTCTCGCGCCCTCCTTCTA 60.824 63.158 0.00 0.00 0.00 2.10
5629 8909 1.791103 CTCTCGCGCCCTCCTTCTAG 61.791 65.000 0.00 0.00 0.00 2.43
5630 8910 3.492311 CTCGCGCCCTCCTTCTAGC 62.492 68.421 0.00 0.00 0.00 3.42
5631 8911 3.838271 CGCGCCCTCCTTCTAGCA 61.838 66.667 0.00 0.00 0.00 3.49
5632 8912 2.107953 GCGCCCTCCTTCTAGCAG 59.892 66.667 0.00 0.00 0.00 4.24
5633 8913 2.107953 CGCCCTCCTTCTAGCAGC 59.892 66.667 0.00 0.00 0.00 5.25
5634 8914 2.107953 GCCCTCCTTCTAGCAGCG 59.892 66.667 0.00 0.00 0.00 5.18
5635 8915 2.107953 CCCTCCTTCTAGCAGCGC 59.892 66.667 0.00 0.00 0.00 5.92
5636 8916 2.107953 CCTCCTTCTAGCAGCGCC 59.892 66.667 2.29 0.00 0.00 6.53
5637 8917 2.725312 CCTCCTTCTAGCAGCGCCA 61.725 63.158 2.29 0.00 0.00 5.69
5638 8918 1.445095 CTCCTTCTAGCAGCGCCAT 59.555 57.895 2.29 0.00 0.00 4.40
5639 8919 0.676184 CTCCTTCTAGCAGCGCCATA 59.324 55.000 2.29 0.00 0.00 2.74
5640 8920 1.069204 CTCCTTCTAGCAGCGCCATAA 59.931 52.381 2.29 0.00 0.00 1.90
5641 8921 1.202533 TCCTTCTAGCAGCGCCATAAC 60.203 52.381 2.29 0.00 0.00 1.89
5642 8922 1.473257 CCTTCTAGCAGCGCCATAACA 60.473 52.381 2.29 0.00 0.00 2.41
5643 8923 1.594862 CTTCTAGCAGCGCCATAACAC 59.405 52.381 2.29 0.00 0.00 3.32
5644 8924 0.534873 TCTAGCAGCGCCATAACACA 59.465 50.000 2.29 0.00 0.00 3.72
5645 8925 1.066502 TCTAGCAGCGCCATAACACAA 60.067 47.619 2.29 0.00 0.00 3.33
5646 8926 1.942657 CTAGCAGCGCCATAACACAAT 59.057 47.619 2.29 0.00 0.00 2.71
5694 8974 6.172630 GGGAAAATTATGTTCAGCCACAATT 58.827 36.000 0.00 0.00 0.00 2.32
5762 9042 6.128607 TGCATCACCGCTTTTGATTAAATTTG 60.129 34.615 0.00 0.00 30.98 2.32
5840 9121 1.922447 TCTGCACCCTGGACCATATTT 59.078 47.619 0.00 0.00 0.00 1.40
6248 9536 4.163268 TGGAGATCATGATTTCGTGGGTAA 59.837 41.667 17.41 0.00 33.80 2.85
6473 9761 2.001872 GCTGCAAATAATGGGTTGTGC 58.998 47.619 0.00 0.00 0.00 4.57
6584 9880 5.010282 AGGTGTACAAGCCCTAATTTCTTG 58.990 41.667 0.00 0.00 41.99 3.02
6838 10894 1.325355 TCGTCGGAGGAAAGTTCAGT 58.675 50.000 0.00 0.00 0.00 3.41
7000 11057 2.603075 TTGGCCCATATTCCCATAGC 57.397 50.000 0.00 0.00 0.00 2.97
7196 11276 4.085357 AGTGTTGATGAACTGGTAAGCA 57.915 40.909 0.00 0.00 32.79 3.91
7242 11322 5.106475 GGTAACATTTCTCAACAATACGGCA 60.106 40.000 0.00 0.00 0.00 5.69
7329 11523 2.903784 TCATCCGTCTCCCAAAAGAAGA 59.096 45.455 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.540515 AGCATCGTCGGTGTAAATCAG 58.459 47.619 7.44 0.00 0.00 2.90
35 36 0.179124 GCAGGAGAGACAACCTAGCG 60.179 60.000 0.00 0.00 34.87 4.26
42 43 3.386078 GGACATGATAGCAGGAGAGACAA 59.614 47.826 0.00 0.00 0.00 3.18
107 108 6.049263 AGACAGTTGATTCACGAGAAAAAC 57.951 37.500 13.15 13.15 37.29 2.43
133 134 1.700186 GGGGTCACTCTGAGAACCTTT 59.300 52.381 23.37 0.00 42.63 3.11
160 161 2.343758 GCACGCACAGAGGGAAGA 59.656 61.111 0.00 0.00 0.00 2.87
162 163 3.923864 ACGCACGCACAGAGGGAA 61.924 61.111 0.00 0.00 0.00 3.97
163 164 4.662961 CACGCACGCACAGAGGGA 62.663 66.667 0.00 0.00 0.00 4.20
183 195 3.840890 AAGACAAAAGAAACACACGCA 57.159 38.095 0.00 0.00 0.00 5.24
206 220 1.364626 GCTCACGTGGATTGCAGGAG 61.365 60.000 17.00 3.10 0.00 3.69
208 222 1.364626 GAGCTCACGTGGATTGCAGG 61.365 60.000 17.00 0.00 0.00 4.85
212 226 0.036952 ACCAGAGCTCACGTGGATTG 60.037 55.000 23.41 7.77 35.17 2.67
300 315 3.868757 TGGTCACAGAGAGTAAATCCG 57.131 47.619 0.00 0.00 0.00 4.18
325 340 6.809869 AGTATTGCAAGCAAACTCTCTTTTT 58.190 32.000 11.89 0.00 39.55 1.94
326 341 6.396829 AGTATTGCAAGCAAACTCTCTTTT 57.603 33.333 11.89 0.00 39.55 2.27
330 345 7.530010 TGAATAAGTATTGCAAGCAAACTCTC 58.470 34.615 11.89 12.54 39.55 3.20
363 378 4.811557 ACGCCGAATTTTTCCATTTTGAAA 59.188 33.333 0.00 0.00 32.60 2.69
386 401 3.695606 GTGCTGGCCTGAGTCCGA 61.696 66.667 14.77 0.00 0.00 4.55
387 402 3.947132 CTGTGCTGGCCTGAGTCCG 62.947 68.421 14.77 0.00 0.00 4.79
405 420 1.518929 GATATTCTCTCGTGTGTGCGC 59.481 52.381 0.00 0.00 0.00 6.09
407 422 4.380087 CGTATGATATTCTCTCGTGTGTGC 59.620 45.833 0.00 0.00 0.00 4.57
429 444 0.945813 TTTACCGCAACTGGTTTCCG 59.054 50.000 0.00 0.00 43.56 4.30
436 451 6.523676 AATCATTTGTTTTTACCGCAACTG 57.476 33.333 0.00 0.00 0.00 3.16
509 531 8.511604 ACCTGGAATTTCATGTGTTAATAGAG 57.488 34.615 0.00 0.00 0.00 2.43
532 554 9.968870 TTTGTTATGTTAACACCTATTTGAACC 57.031 29.630 11.22 0.00 0.00 3.62
633 657 8.387813 TGTTCCACAACTATTTATTACTCCCTT 58.612 33.333 0.00 0.00 33.17 3.95
643 667 9.562408 TGACATTTACTGTTCCACAACTATTTA 57.438 29.630 0.00 0.00 38.54 1.40
644 668 8.349983 GTGACATTTACTGTTCCACAACTATTT 58.650 33.333 0.00 0.00 38.54 1.40
645 669 7.719633 AGTGACATTTACTGTTCCACAACTATT 59.280 33.333 0.00 0.00 38.54 1.73
646 670 7.224297 AGTGACATTTACTGTTCCACAACTAT 58.776 34.615 0.00 0.00 38.54 2.12
647 671 6.588204 AGTGACATTTACTGTTCCACAACTA 58.412 36.000 0.00 0.00 38.54 2.24
648 672 5.437060 AGTGACATTTACTGTTCCACAACT 58.563 37.500 0.00 0.00 38.54 3.16
649 673 5.751243 AGTGACATTTACTGTTCCACAAC 57.249 39.130 0.00 0.00 38.54 3.32
650 674 7.717436 TGAATAGTGACATTTACTGTTCCACAA 59.283 33.333 10.64 0.00 42.24 3.33
651 675 7.220740 TGAATAGTGACATTTACTGTTCCACA 58.779 34.615 10.64 0.00 42.24 4.17
652 676 7.667043 TGAATAGTGACATTTACTGTTCCAC 57.333 36.000 10.64 0.00 42.24 4.02
653 677 8.862325 AATGAATAGTGACATTTACTGTTCCA 57.138 30.769 10.64 2.52 42.24 3.53
807 835 9.116054 GCAATGTTAATGTTGCCAAATAAAAAG 57.884 29.630 13.71 0.00 43.65 2.27
827 855 1.537990 GCGGAAACCAAGTTGCAATGT 60.538 47.619 0.59 0.00 0.00 2.71
959 997 1.633774 GAGTGGACTGTGGGAGAAGA 58.366 55.000 0.00 0.00 0.00 2.87
1272 1310 4.779733 AGGATGGGGACGGCGAGT 62.780 66.667 16.62 0.00 0.00 4.18
1490 1529 3.778954 CTGGAAGGAAGGAAGTCAAGT 57.221 47.619 0.00 0.00 0.00 3.16
1754 1836 3.889044 GAGCGCACGATCTCCGGA 61.889 66.667 11.47 2.93 43.93 5.14
1780 1862 2.359850 GCAGGCCGGTGACAATCA 60.360 61.111 1.90 0.00 0.00 2.57
1856 1938 6.317642 CGGAAATTACAATATCACCACTGGAA 59.682 38.462 0.71 0.00 0.00 3.53
1858 1940 5.588648 ACGGAAATTACAATATCACCACTGG 59.411 40.000 0.00 0.00 0.00 4.00
1862 1947 8.616942 CAATGTACGGAAATTACAATATCACCA 58.383 33.333 0.00 0.00 33.22 4.17
1863 1948 7.589954 GCAATGTACGGAAATTACAATATCACC 59.410 37.037 0.00 0.00 33.22 4.02
1865 1950 7.255312 GGGCAATGTACGGAAATTACAATATCA 60.255 37.037 0.00 0.00 33.22 2.15
1870 1960 4.079970 TGGGCAATGTACGGAAATTACAA 58.920 39.130 0.00 0.00 33.22 2.41
1884 2778 2.573083 AAACGGGCTGTGGGCAATG 61.573 57.895 0.00 0.00 44.01 2.82
1948 2853 1.714899 CCCCTACGAAATGCTTGGCG 61.715 60.000 0.00 0.00 0.00 5.69
1979 2884 2.135189 CCCCTCATTGATCCCCTTGTA 58.865 52.381 0.00 0.00 0.00 2.41
2038 2943 4.938575 ACAATCAGGGTATGGTTTGGTA 57.061 40.909 0.00 0.00 26.05 3.25
2041 2946 6.299141 AGCTATACAATCAGGGTATGGTTTG 58.701 40.000 0.00 0.00 33.67 2.93
2283 3205 2.187958 CTGTCAATACCCTCCCAGTCA 58.812 52.381 0.00 0.00 0.00 3.41
2649 3576 0.533491 AGCGGAAACATAGGTACGCA 59.467 50.000 20.60 0.00 43.03 5.24
2652 3579 4.565564 CAGTAACAGCGGAAACATAGGTAC 59.434 45.833 0.00 0.00 0.00 3.34
2720 3650 2.769663 GGTATATGGTCACCACTCACCA 59.230 50.000 14.96 0.00 46.84 4.17
2721 3651 2.769663 TGGTATATGGTCACCACTCACC 59.230 50.000 13.52 13.52 39.91 4.02
2741 3671 8.231304 CTGAAAGGTAAACAATTTAGCACATG 57.769 34.615 11.78 0.00 43.97 3.21
2955 3943 6.584185 TTTTGCTTACCAAGGGTTATCTTC 57.416 37.500 0.00 0.00 37.09 2.87
3000 3988 6.042143 CCTCAAACAAATAAAATCATCCCGG 58.958 40.000 0.00 0.00 0.00 5.73
3086 4104 2.525629 TCCAAGGAGCGGACACCA 60.526 61.111 0.00 0.00 0.00 4.17
3087 4105 1.617947 ATCTCCAAGGAGCGGACACC 61.618 60.000 11.31 0.00 41.71 4.16
3302 4497 3.077359 GCACTGTGGAAACTCTAAGCAT 58.923 45.455 10.21 0.00 0.00 3.79
3473 4668 7.251936 TGATTAGATTGATACATCCCCTCTCT 58.748 38.462 0.00 0.00 0.00 3.10
3474 4669 7.487822 TGATTAGATTGATACATCCCCTCTC 57.512 40.000 0.00 0.00 0.00 3.20
3475 4670 7.528543 GCTTGATTAGATTGATACATCCCCTCT 60.529 40.741 0.00 0.00 0.00 3.69
3476 4671 6.597280 GCTTGATTAGATTGATACATCCCCTC 59.403 42.308 0.00 0.00 0.00 4.30
3477 4672 6.044754 TGCTTGATTAGATTGATACATCCCCT 59.955 38.462 0.00 0.00 0.00 4.79
3478 4673 6.240894 TGCTTGATTAGATTGATACATCCCC 58.759 40.000 0.00 0.00 0.00 4.81
3479 4674 7.663081 TCTTGCTTGATTAGATTGATACATCCC 59.337 37.037 0.00 0.00 0.00 3.85
3480 4675 8.613060 TCTTGCTTGATTAGATTGATACATCC 57.387 34.615 0.00 0.00 0.00 3.51
3490 4685 9.911788 TCCTTCTTAATTCTTGCTTGATTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
3491 4686 9.739276 TTCCTTCTTAATTCTTGCTTGATTAGA 57.261 29.630 0.00 0.00 0.00 2.10
3494 4689 9.866798 GATTTCCTTCTTAATTCTTGCTTGATT 57.133 29.630 0.00 0.00 0.00 2.57
3495 4690 8.473219 GGATTTCCTTCTTAATTCTTGCTTGAT 58.527 33.333 0.00 0.00 0.00 2.57
3496 4691 7.093771 GGGATTTCCTTCTTAATTCTTGCTTGA 60.094 37.037 0.00 0.00 35.95 3.02
3497 4692 7.038048 GGGATTTCCTTCTTAATTCTTGCTTG 58.962 38.462 0.00 0.00 35.95 4.01
3498 4693 6.956435 AGGGATTTCCTTCTTAATTCTTGCTT 59.044 34.615 0.00 0.00 45.47 3.91
3499 4694 6.497640 AGGGATTTCCTTCTTAATTCTTGCT 58.502 36.000 0.00 0.00 45.47 3.91
3500 4695 6.782082 AGGGATTTCCTTCTTAATTCTTGC 57.218 37.500 0.00 0.00 45.47 4.01
3515 4710 1.686428 GGGCAAGAGGGAAGGGATTTC 60.686 57.143 0.00 0.00 34.93 2.17
3516 4711 0.336392 GGGCAAGAGGGAAGGGATTT 59.664 55.000 0.00 0.00 0.00 2.17
3517 4712 1.926426 CGGGCAAGAGGGAAGGGATT 61.926 60.000 0.00 0.00 0.00 3.01
3518 4713 2.378634 CGGGCAAGAGGGAAGGGAT 61.379 63.158 0.00 0.00 0.00 3.85
3519 4714 3.009115 CGGGCAAGAGGGAAGGGA 61.009 66.667 0.00 0.00 0.00 4.20
3520 4715 4.115199 CCGGGCAAGAGGGAAGGG 62.115 72.222 0.00 0.00 0.00 3.95
3521 4716 4.803908 GCCGGGCAAGAGGGAAGG 62.804 72.222 15.62 0.00 0.00 3.46
3522 4717 4.803908 GGCCGGGCAAGAGGGAAG 62.804 72.222 25.33 0.00 0.00 3.46
3565 4760 4.214327 GAAGGAGGGCGCGAGAGG 62.214 72.222 12.10 0.00 0.00 3.69
3566 4761 1.791103 CTAGAAGGAGGGCGCGAGAG 61.791 65.000 12.10 0.00 0.00 3.20
3567 4762 1.824329 CTAGAAGGAGGGCGCGAGA 60.824 63.158 12.10 0.00 0.00 4.04
3568 4763 2.725008 CTAGAAGGAGGGCGCGAG 59.275 66.667 12.10 0.00 0.00 5.03
3569 4764 3.528370 GCTAGAAGGAGGGCGCGA 61.528 66.667 12.10 0.00 0.00 5.87
3570 4765 3.781770 CTGCTAGAAGGAGGGCGCG 62.782 68.421 0.00 0.00 29.18 6.86
3571 4766 2.107953 CTGCTAGAAGGAGGGCGC 59.892 66.667 0.00 0.00 29.18 6.53
3572 4767 2.107953 GCTGCTAGAAGGAGGGCG 59.892 66.667 0.00 0.00 33.92 6.13
3573 4768 2.107953 CGCTGCTAGAAGGAGGGC 59.892 66.667 0.00 0.00 39.48 5.19
3574 4769 2.107953 GCGCTGCTAGAAGGAGGG 59.892 66.667 0.00 7.93 46.69 4.30
3575 4770 2.037620 ATGGCGCTGCTAGAAGGAGG 62.038 60.000 7.64 0.00 33.92 4.30
3576 4771 0.676184 TATGGCGCTGCTAGAAGGAG 59.324 55.000 7.64 0.00 36.68 3.69
3577 4772 1.119684 TTATGGCGCTGCTAGAAGGA 58.880 50.000 7.64 0.00 0.00 3.36
3578 4773 1.221414 GTTATGGCGCTGCTAGAAGG 58.779 55.000 7.64 0.00 0.00 3.46
3579 4774 1.939974 TGTTATGGCGCTGCTAGAAG 58.060 50.000 7.64 0.00 0.00 2.85
3580 4775 2.394930 TTGTTATGGCGCTGCTAGAA 57.605 45.000 7.64 0.00 0.00 2.10
3581 4776 2.620251 ATTGTTATGGCGCTGCTAGA 57.380 45.000 7.64 0.00 0.00 2.43
3582 4777 3.365832 CAAATTGTTATGGCGCTGCTAG 58.634 45.455 7.64 0.00 0.00 3.42
3583 4778 2.098934 CCAAATTGTTATGGCGCTGCTA 59.901 45.455 7.64 0.00 0.00 3.49
3584 4779 1.135024 CCAAATTGTTATGGCGCTGCT 60.135 47.619 7.64 0.00 0.00 4.24
3585 4780 1.280066 CCAAATTGTTATGGCGCTGC 58.720 50.000 7.64 0.00 0.00 5.25
3586 4781 2.652941 ACCAAATTGTTATGGCGCTG 57.347 45.000 7.64 0.00 40.51 5.18
3587 4782 3.951037 TGATACCAAATTGTTATGGCGCT 59.049 39.130 7.64 0.00 40.51 5.92
3588 4783 4.290155 CTGATACCAAATTGTTATGGCGC 58.710 43.478 0.00 0.00 40.51 6.53
3589 4784 4.338118 ACCTGATACCAAATTGTTATGGCG 59.662 41.667 0.00 0.00 40.51 5.69
3590 4785 5.852282 ACCTGATACCAAATTGTTATGGC 57.148 39.130 0.00 0.00 40.51 4.40
3591 4786 6.772716 AGCTACCTGATACCAAATTGTTATGG 59.227 38.462 0.00 0.00 42.60 2.74
3592 4787 7.498900 TGAGCTACCTGATACCAAATTGTTATG 59.501 37.037 0.00 0.00 0.00 1.90
3593 4788 7.573710 TGAGCTACCTGATACCAAATTGTTAT 58.426 34.615 0.00 0.00 0.00 1.89
3594 4789 6.953101 TGAGCTACCTGATACCAAATTGTTA 58.047 36.000 0.00 0.00 0.00 2.41
3595 4790 5.815581 TGAGCTACCTGATACCAAATTGTT 58.184 37.500 0.00 0.00 0.00 2.83
3596 4791 5.045578 ACTGAGCTACCTGATACCAAATTGT 60.046 40.000 0.00 0.00 0.00 2.71
3597 4792 5.431765 ACTGAGCTACCTGATACCAAATTG 58.568 41.667 0.00 0.00 0.00 2.32
3598 4793 5.700402 ACTGAGCTACCTGATACCAAATT 57.300 39.130 0.00 0.00 0.00 1.82
3599 4794 5.396884 GGAACTGAGCTACCTGATACCAAAT 60.397 44.000 0.00 0.00 0.00 2.32
3600 4795 4.081087 GGAACTGAGCTACCTGATACCAAA 60.081 45.833 0.00 0.00 0.00 3.28
3601 4796 3.451178 GGAACTGAGCTACCTGATACCAA 59.549 47.826 0.00 0.00 0.00 3.67
3602 4797 3.031736 GGAACTGAGCTACCTGATACCA 58.968 50.000 0.00 0.00 0.00 3.25
3603 4798 2.034812 CGGAACTGAGCTACCTGATACC 59.965 54.545 0.00 0.00 0.00 2.73
3604 4799 2.034812 CCGGAACTGAGCTACCTGATAC 59.965 54.545 0.00 0.00 0.00 2.24
3605 4800 2.307768 CCGGAACTGAGCTACCTGATA 58.692 52.381 0.00 0.00 0.00 2.15
3606 4801 1.115467 CCGGAACTGAGCTACCTGAT 58.885 55.000 0.00 0.00 0.00 2.90
3607 4802 0.251653 ACCGGAACTGAGCTACCTGA 60.252 55.000 9.46 0.00 0.00 3.86
3608 4803 0.173708 GACCGGAACTGAGCTACCTG 59.826 60.000 9.46 0.00 0.00 4.00
3609 4804 0.251653 TGACCGGAACTGAGCTACCT 60.252 55.000 9.46 0.00 0.00 3.08
3610 4805 0.824759 ATGACCGGAACTGAGCTACC 59.175 55.000 9.46 0.00 0.00 3.18
3611 4806 1.204941 ACATGACCGGAACTGAGCTAC 59.795 52.381 9.46 0.00 0.00 3.58
3612 4807 1.476891 GACATGACCGGAACTGAGCTA 59.523 52.381 9.46 0.00 0.00 3.32
3613 4808 0.247736 GACATGACCGGAACTGAGCT 59.752 55.000 9.46 0.00 0.00 4.09
3614 4809 0.247736 AGACATGACCGGAACTGAGC 59.752 55.000 9.46 0.42 0.00 4.26
3615 4810 2.611518 GAAGACATGACCGGAACTGAG 58.388 52.381 9.46 0.00 0.00 3.35
3616 4811 1.067846 CGAAGACATGACCGGAACTGA 60.068 52.381 9.46 0.00 0.00 3.41
3617 4812 1.336887 ACGAAGACATGACCGGAACTG 60.337 52.381 9.46 4.20 0.00 3.16
3618 4813 0.966920 ACGAAGACATGACCGGAACT 59.033 50.000 9.46 0.00 0.00 3.01
3619 4814 1.347320 GACGAAGACATGACCGGAAC 58.653 55.000 9.46 1.77 0.00 3.62
3620 4815 0.109458 CGACGAAGACATGACCGGAA 60.109 55.000 9.46 0.00 0.00 4.30
3621 4816 1.504900 CGACGAAGACATGACCGGA 59.495 57.895 9.46 0.00 0.00 5.14
3622 4817 2.158959 GCGACGAAGACATGACCGG 61.159 63.158 0.00 0.00 0.00 5.28
3623 4818 2.158959 GGCGACGAAGACATGACCG 61.159 63.158 0.00 0.00 0.00 4.79
3624 4819 3.782042 GGCGACGAAGACATGACC 58.218 61.111 0.00 0.00 0.00 4.02
3682 4877 2.203070 GGTGTAGATGGCCAGCGG 60.203 66.667 16.75 0.00 0.00 5.52
3683 4878 2.586079 CGGTGTAGATGGCCAGCG 60.586 66.667 16.75 5.42 44.60 5.18
3684 4879 2.897350 GCGGTGTAGATGGCCAGC 60.897 66.667 14.72 14.72 0.00 4.85
3685 4880 2.586079 CGCGGTGTAGATGGCCAG 60.586 66.667 13.05 0.00 0.00 4.85
3686 4881 4.830765 GCGCGGTGTAGATGGCCA 62.831 66.667 8.56 8.56 0.00 5.36
3690 4885 4.873129 AGCGGCGCGGTGTAGATG 62.873 66.667 27.59 0.00 35.85 2.90
3773 4968 3.687102 TAGACGGTGGTGCGGTGG 61.687 66.667 0.00 0.00 0.00 4.61
3774 4969 2.431942 GTAGACGGTGGTGCGGTG 60.432 66.667 0.00 0.00 0.00 4.94
3775 4970 2.913578 TGTAGACGGTGGTGCGGT 60.914 61.111 0.00 0.00 0.00 5.68
3776 4971 2.431942 GTGTAGACGGTGGTGCGG 60.432 66.667 0.00 0.00 0.00 5.69
3777 4972 2.431942 GGTGTAGACGGTGGTGCG 60.432 66.667 0.00 0.00 0.00 5.34
3778 4973 2.047560 GGGTGTAGACGGTGGTGC 60.048 66.667 0.00 0.00 0.00 5.01
3779 4974 2.660802 GGGGTGTAGACGGTGGTG 59.339 66.667 0.00 0.00 0.00 4.17
3780 4975 2.993264 CGGGGTGTAGACGGTGGT 60.993 66.667 0.00 0.00 0.00 4.16
3781 4976 3.766691 CCGGGGTGTAGACGGTGG 61.767 72.222 0.00 0.00 42.53 4.61
3785 4980 2.044650 TCCTCCGGGGTGTAGACG 60.045 66.667 0.00 0.00 36.25 4.18
3786 4981 0.106116 ATCTCCTCCGGGGTGTAGAC 60.106 60.000 0.00 0.00 36.25 2.59
3787 4982 0.185416 GATCTCCTCCGGGGTGTAGA 59.815 60.000 0.00 0.00 36.25 2.59
3788 4983 0.106167 TGATCTCCTCCGGGGTGTAG 60.106 60.000 0.00 0.00 36.25 2.74
3789 4984 0.396695 GTGATCTCCTCCGGGGTGTA 60.397 60.000 0.00 0.00 36.25 2.90
3790 4985 1.686110 GTGATCTCCTCCGGGGTGT 60.686 63.158 0.00 0.00 36.25 4.16
3791 4986 2.435693 GGTGATCTCCTCCGGGGTG 61.436 68.421 0.00 2.44 36.25 4.61
3792 4987 2.041819 GGTGATCTCCTCCGGGGT 60.042 66.667 0.00 0.00 36.25 4.95
3793 4988 3.227276 CGGTGATCTCCTCCGGGG 61.227 72.222 11.86 0.00 45.38 5.73
3797 4992 2.041819 ACCCCGGTGATCTCCTCC 60.042 66.667 11.86 0.34 0.00 4.30
3798 4993 2.134933 GGACCCCGGTGATCTCCTC 61.135 68.421 11.86 2.71 0.00 3.71
3799 4994 2.041819 GGACCCCGGTGATCTCCT 60.042 66.667 11.86 0.00 0.00 3.69
3800 4995 2.041819 AGGACCCCGGTGATCTCC 60.042 66.667 0.00 3.58 0.00 3.71
3801 4996 0.976073 TTGAGGACCCCGGTGATCTC 60.976 60.000 0.00 2.54 0.00 2.75
3802 4997 0.326618 ATTGAGGACCCCGGTGATCT 60.327 55.000 0.00 0.00 0.00 2.75
3803 4998 0.179045 CATTGAGGACCCCGGTGATC 60.179 60.000 0.00 0.00 0.00 2.92
3804 4999 1.635817 CCATTGAGGACCCCGGTGAT 61.636 60.000 0.00 0.00 41.22 3.06
3805 5000 2.297895 CCATTGAGGACCCCGGTGA 61.298 63.158 0.00 0.00 41.22 4.02
3806 5001 2.272146 CCATTGAGGACCCCGGTG 59.728 66.667 0.00 0.00 41.22 4.94
3807 5002 3.728373 GCCATTGAGGACCCCGGT 61.728 66.667 0.00 0.00 41.22 5.28
3808 5003 4.506255 GGCCATTGAGGACCCCGG 62.506 72.222 0.00 0.00 40.85 5.73
3814 5009 1.191489 TGTGACGAGGCCATTGAGGA 61.191 55.000 5.01 0.00 41.22 3.71
3815 5010 0.742281 CTGTGACGAGGCCATTGAGG 60.742 60.000 5.01 0.00 41.84 3.86
3816 5011 1.364626 GCTGTGACGAGGCCATTGAG 61.365 60.000 5.01 0.00 0.00 3.02
3817 5012 1.375908 GCTGTGACGAGGCCATTGA 60.376 57.895 5.01 0.00 0.00 2.57
3818 5013 2.401766 GGCTGTGACGAGGCCATTG 61.402 63.158 5.01 0.00 44.69 2.82
3819 5014 2.045926 GGCTGTGACGAGGCCATT 60.046 61.111 5.01 0.00 44.69 3.16
3820 5015 4.457496 CGGCTGTGACGAGGCCAT 62.457 66.667 5.01 0.00 45.50 4.40
3824 5019 3.633094 CTGGACGGCTGTGACGAGG 62.633 68.421 0.80 0.00 35.20 4.63
3825 5020 2.126307 CTGGACGGCTGTGACGAG 60.126 66.667 0.80 0.00 35.20 4.18
3826 5021 3.680786 CCTGGACGGCTGTGACGA 61.681 66.667 0.80 0.00 35.20 4.20
3827 5022 4.742201 CCCTGGACGGCTGTGACG 62.742 72.222 0.80 0.00 41.40 4.35
3828 5023 4.394712 CCCCTGGACGGCTGTGAC 62.395 72.222 0.80 0.00 0.00 3.67
3829 5024 3.924013 ATCCCCTGGACGGCTGTGA 62.924 63.158 0.80 0.00 32.98 3.58
3830 5025 3.391665 GATCCCCTGGACGGCTGTG 62.392 68.421 0.80 0.00 32.98 3.66
3831 5026 3.083997 GATCCCCTGGACGGCTGT 61.084 66.667 0.00 0.00 32.98 4.40
3832 5027 3.866582 GGATCCCCTGGACGGCTG 61.867 72.222 0.00 0.00 32.98 4.85
3836 5031 3.960702 TATAGCCGGATCCCCTGGACG 62.961 61.905 5.05 0.00 32.98 4.79
3837 5032 0.252103 TATAGCCGGATCCCCTGGAC 60.252 60.000 5.05 0.00 32.98 4.02
3838 5033 0.252103 GTATAGCCGGATCCCCTGGA 60.252 60.000 5.05 0.00 35.55 3.86
3839 5034 1.265454 GGTATAGCCGGATCCCCTGG 61.265 65.000 5.05 2.62 0.00 4.45
3840 5035 0.252284 AGGTATAGCCGGATCCCCTG 60.252 60.000 5.05 0.00 43.70 4.45
3841 5036 0.252284 CAGGTATAGCCGGATCCCCT 60.252 60.000 5.05 1.41 43.70 4.79
3842 5037 1.265454 CCAGGTATAGCCGGATCCCC 61.265 65.000 5.05 0.00 43.70 4.81
3843 5038 1.900545 GCCAGGTATAGCCGGATCCC 61.901 65.000 5.05 0.00 43.70 3.85
3844 5039 1.597461 GCCAGGTATAGCCGGATCC 59.403 63.158 5.05 0.00 43.70 3.36
3845 5040 1.597461 GGCCAGGTATAGCCGGATC 59.403 63.158 5.05 0.00 43.70 3.36
3846 5041 3.807368 GGCCAGGTATAGCCGGAT 58.193 61.111 5.05 0.00 43.70 4.18
3851 5046 2.432123 GGGCTGGCCAGGTATAGC 59.568 66.667 33.46 19.02 37.98 2.97
3852 5047 0.178903 TAGGGGCTGGCCAGGTATAG 60.179 60.000 33.46 9.13 37.98 1.31
3853 5048 0.473117 GTAGGGGCTGGCCAGGTATA 60.473 60.000 33.46 0.00 37.98 1.47
3854 5049 1.770518 GTAGGGGCTGGCCAGGTAT 60.771 63.158 33.46 4.64 37.98 2.73
3855 5050 2.366435 GTAGGGGCTGGCCAGGTA 60.366 66.667 33.46 7.32 37.98 3.08
3886 5081 4.641645 TGGCGGTCAACAGCAGGG 62.642 66.667 7.54 0.00 38.83 4.45
3887 5082 3.357079 GTGGCGGTCAACAGCAGG 61.357 66.667 7.54 0.00 38.83 4.85
3888 5083 3.357079 GGTGGCGGTCAACAGCAG 61.357 66.667 7.54 0.00 38.83 4.24
3917 5112 4.468689 GAGTACCACGGCAGGGCC 62.469 72.222 0.00 0.00 46.75 5.80
3918 5113 4.814294 CGAGTACCACGGCAGGGC 62.814 72.222 2.71 0.00 0.00 5.19
3919 5114 4.814294 GCGAGTACCACGGCAGGG 62.814 72.222 11.05 0.00 0.00 4.45
3924 5119 4.508128 ATGCGGCGAGTACCACGG 62.508 66.667 12.98 0.00 0.00 4.94
3925 5120 2.954868 GATGCGGCGAGTACCACG 60.955 66.667 12.98 5.83 0.00 4.94
3926 5121 2.585247 GGATGCGGCGAGTACCAC 60.585 66.667 12.98 0.00 0.00 4.16
3927 5122 3.071837 TGGATGCGGCGAGTACCA 61.072 61.111 12.98 11.28 0.00 3.25
3928 5123 2.279517 CTGGATGCGGCGAGTACC 60.280 66.667 12.98 8.52 0.00 3.34
3929 5124 2.279517 CCTGGATGCGGCGAGTAC 60.280 66.667 12.98 0.00 0.00 2.73
3930 5125 3.536917 CCCTGGATGCGGCGAGTA 61.537 66.667 12.98 0.00 0.00 2.59
3957 5152 3.869272 CAGCGTCCCAGCGAATGC 61.869 66.667 0.00 0.00 43.00 3.56
3958 5153 2.034879 AACAGCGTCCCAGCGAATG 61.035 57.895 0.00 0.00 43.00 2.67
3959 5154 2.034879 CAACAGCGTCCCAGCGAAT 61.035 57.895 0.00 0.00 43.00 3.34
3960 5155 2.664851 CAACAGCGTCCCAGCGAA 60.665 61.111 0.00 0.00 43.00 4.70
3972 5167 3.371063 CTGCAGCTGGGGCAACAG 61.371 66.667 17.12 9.08 41.39 3.16
5015 6226 0.773644 ACACCATGCCTTCTTCCTGT 59.226 50.000 0.00 0.00 0.00 4.00
5098 6309 1.445518 TCGCAAGAGTGACCAGCAA 59.554 52.632 0.00 0.00 45.01 3.91
5133 6344 4.067896 AGACAAAAGGAGTGCATGTGTAG 58.932 43.478 0.00 0.00 0.00 2.74
5155 6366 2.338809 GGATCCCATGGACACCATCTA 58.661 52.381 15.22 0.00 43.15 1.98
5252 6463 8.519799 TTATTATTCTCAACCTGAAATGGACC 57.480 34.615 0.00 0.00 0.00 4.46
5333 6544 6.260936 CAGCCTAACCAACTTATAACCATGAG 59.739 42.308 0.00 0.00 0.00 2.90
5609 8889 4.214327 GAAGGAGGGCGCGAGAGG 62.214 72.222 12.10 0.00 0.00 3.69
5610 8890 1.791103 CTAGAAGGAGGGCGCGAGAG 61.791 65.000 12.10 0.00 0.00 3.20
5611 8891 1.824329 CTAGAAGGAGGGCGCGAGA 60.824 63.158 12.10 0.00 0.00 4.04
5612 8892 2.725008 CTAGAAGGAGGGCGCGAG 59.275 66.667 12.10 0.00 0.00 5.03
5613 8893 3.528370 GCTAGAAGGAGGGCGCGA 61.528 66.667 12.10 0.00 0.00 5.87
5614 8894 3.781770 CTGCTAGAAGGAGGGCGCG 62.782 68.421 0.00 0.00 29.18 6.86
5615 8895 2.107953 CTGCTAGAAGGAGGGCGC 59.892 66.667 0.00 0.00 29.18 6.53
5616 8896 2.107953 GCTGCTAGAAGGAGGGCG 59.892 66.667 0.00 0.00 33.92 6.13
5617 8897 2.107953 CGCTGCTAGAAGGAGGGC 59.892 66.667 0.00 0.00 39.48 5.19
5618 8898 2.107953 GCGCTGCTAGAAGGAGGG 59.892 66.667 0.00 7.93 46.69 4.30
5619 8899 2.037620 ATGGCGCTGCTAGAAGGAGG 62.038 60.000 7.64 0.00 33.92 4.30
5620 8900 0.676184 TATGGCGCTGCTAGAAGGAG 59.324 55.000 7.64 0.00 36.68 3.69
5621 8901 1.119684 TTATGGCGCTGCTAGAAGGA 58.880 50.000 7.64 0.00 0.00 3.36
5622 8902 1.221414 GTTATGGCGCTGCTAGAAGG 58.779 55.000 7.64 0.00 0.00 3.46
5623 8903 1.594862 GTGTTATGGCGCTGCTAGAAG 59.405 52.381 7.64 0.00 0.00 2.85
5624 8904 1.066502 TGTGTTATGGCGCTGCTAGAA 60.067 47.619 7.64 0.00 0.00 2.10
5625 8905 0.534873 TGTGTTATGGCGCTGCTAGA 59.465 50.000 7.64 0.00 0.00 2.43
5626 8906 1.368641 TTGTGTTATGGCGCTGCTAG 58.631 50.000 7.64 0.00 0.00 3.42
5627 8907 1.939934 GATTGTGTTATGGCGCTGCTA 59.060 47.619 7.64 0.00 0.00 3.49
5628 8908 0.734889 GATTGTGTTATGGCGCTGCT 59.265 50.000 7.64 0.00 0.00 4.24
5629 8909 0.451383 TGATTGTGTTATGGCGCTGC 59.549 50.000 7.64 0.00 0.00 5.25
5630 8910 3.425577 AATGATTGTGTTATGGCGCTG 57.574 42.857 7.64 0.00 0.00 5.18
5631 8911 4.035558 CAGTAATGATTGTGTTATGGCGCT 59.964 41.667 7.64 0.00 0.00 5.92
5632 8912 4.035091 TCAGTAATGATTGTGTTATGGCGC 59.965 41.667 0.00 0.00 0.00 6.53
5633 8913 5.733226 TCAGTAATGATTGTGTTATGGCG 57.267 39.130 0.00 0.00 0.00 5.69
5634 8914 7.088589 AGTTCAGTAATGATTGTGTTATGGC 57.911 36.000 0.00 0.00 0.00 4.40
5635 8915 9.988350 GTTAGTTCAGTAATGATTGTGTTATGG 57.012 33.333 0.00 0.00 0.00 2.74
5636 8916 9.988350 GGTTAGTTCAGTAATGATTGTGTTATG 57.012 33.333 0.00 0.00 0.00 1.90
5637 8917 9.733556 TGGTTAGTTCAGTAATGATTGTGTTAT 57.266 29.630 0.00 0.00 0.00 1.89
5638 8918 9.562408 TTGGTTAGTTCAGTAATGATTGTGTTA 57.438 29.630 0.00 0.00 0.00 2.41
5639 8919 8.458573 TTGGTTAGTTCAGTAATGATTGTGTT 57.541 30.769 0.00 0.00 0.00 3.32
5640 8920 8.635765 ATTGGTTAGTTCAGTAATGATTGTGT 57.364 30.769 0.00 0.00 0.00 3.72
5641 8921 9.559958 GAATTGGTTAGTTCAGTAATGATTGTG 57.440 33.333 0.00 0.00 0.00 3.33
5642 8922 9.520515 AGAATTGGTTAGTTCAGTAATGATTGT 57.479 29.630 0.00 0.00 0.00 2.71
5643 8923 9.778993 CAGAATTGGTTAGTTCAGTAATGATTG 57.221 33.333 0.00 0.00 0.00 2.67
5644 8924 8.960591 CCAGAATTGGTTAGTTCAGTAATGATT 58.039 33.333 0.00 0.00 39.79 2.57
5645 8925 7.557719 CCCAGAATTGGTTAGTTCAGTAATGAT 59.442 37.037 0.00 0.00 43.40 2.45
5646 8926 6.884295 CCCAGAATTGGTTAGTTCAGTAATGA 59.116 38.462 0.00 0.00 43.40 2.57
5694 8974 2.806745 GCTATCCGCATGTTAAGGAGCA 60.807 50.000 0.00 0.00 37.49 4.26
5722 9002 4.754114 GGTGATGCATGGCTAAAACAAAAA 59.246 37.500 2.46 0.00 0.00 1.94
5723 9003 4.314121 GGTGATGCATGGCTAAAACAAAA 58.686 39.130 2.46 0.00 0.00 2.44
5724 9004 3.613671 CGGTGATGCATGGCTAAAACAAA 60.614 43.478 2.46 0.00 0.00 2.83
5727 9007 1.798813 GCGGTGATGCATGGCTAAAAC 60.799 52.381 2.46 0.00 34.15 2.43
5731 9011 0.394216 AAAGCGGTGATGCATGGCTA 60.394 50.000 2.46 0.00 37.31 3.93
5874 9155 5.298347 GCCTCCAATATACTTGTACCTGTC 58.702 45.833 0.00 0.00 0.00 3.51
6248 9536 3.945285 CCTAAACCACGATACAGGCAATT 59.055 43.478 0.00 0.00 0.00 2.32
6445 9733 4.142093 ACCCATTATTTGCAGCAAGACATC 60.142 41.667 8.12 0.00 0.00 3.06
6473 9761 8.578308 TGCAACAAGACATTAATTCTCTTTTG 57.422 30.769 3.33 10.23 0.00 2.44
6838 10894 4.623886 GCAGTCCAGTCTCCAAATATCACA 60.624 45.833 0.00 0.00 0.00 3.58
7000 11057 1.401552 CGGTGAATTGTGCTGTATGGG 59.598 52.381 0.00 0.00 0.00 4.00
7183 11263 1.071699 GGACACCTGCTTACCAGTTCA 59.928 52.381 0.00 0.00 40.06 3.18
7196 11276 4.223032 CCTACTGTTACATCTTGGACACCT 59.777 45.833 0.00 0.00 0.00 4.00
7242 11322 0.627986 CCTTTTGCCTCCTCTCCCAT 59.372 55.000 0.00 0.00 0.00 4.00
7329 11523 9.866655 TCATGGCTTGAGATAAAATTTATAGGT 57.133 29.630 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.