Multiple sequence alignment - TraesCS1D01G277800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G277800 chr1D 100.000 3302 0 0 1 3302 375100913 375104214 0.000000e+00 6098
1 TraesCS1D01G277800 chr1D 88.900 1928 179 12 481 2382 71517754 71519672 0.000000e+00 2342
2 TraesCS1D01G277800 chr1D 91.395 337 28 1 1 336 333958273 333958609 8.350000e-126 460
3 TraesCS1D01G277800 chr7D 90.521 1920 156 11 486 2382 63083733 63081817 0.000000e+00 2514
4 TraesCS1D01G277800 chr7D 90.062 1922 160 18 481 2377 53130489 53132404 0.000000e+00 2462
5 TraesCS1D01G277800 chr7D 89.892 1662 131 16 486 2125 169693793 169692147 0.000000e+00 2104
6 TraesCS1D01G277800 chr7D 89.677 1579 135 9 828 2382 166282188 166280614 0.000000e+00 1988
7 TraesCS1D01G277800 chr7D 96.401 917 32 1 2387 3302 203620635 203621551 0.000000e+00 1509
8 TraesCS1D01G277800 chr7D 96.401 917 32 1 2387 3302 572243025 572242109 0.000000e+00 1509
9 TraesCS1D01G277800 chr7D 96.187 918 33 2 2387 3302 422380626 422381543 0.000000e+00 1500
10 TraesCS1D01G277800 chr6B 90.057 1921 159 14 486 2382 426620781 426622693 0.000000e+00 2460
11 TraesCS1D01G277800 chr6B 88.384 1584 138 8 823 2383 465508355 465509915 0.000000e+00 1864
12 TraesCS1D01G277800 chr6B 91.892 407 31 2 1 405 202675404 202675810 4.780000e-158 568
13 TraesCS1D01G277800 chr6B 91.022 401 35 1 1 400 465507731 465508131 1.040000e-149 540
14 TraesCS1D01G277800 chr6D 89.471 1928 162 16 481 2382 411317537 411319449 0.000000e+00 2398
15 TraesCS1D01G277800 chr6A 89.427 1920 177 7 486 2382 386081882 386079966 0.000000e+00 2398
16 TraesCS1D01G277800 chr5D 89.529 1910 163 10 486 2372 374969801 374971696 0.000000e+00 2385
17 TraesCS1D01G277800 chr5D 89.236 1923 170 14 486 2382 318603404 318601493 0.000000e+00 2370
18 TraesCS1D01G277800 chr5D 93.113 1452 98 2 486 1936 534906310 534904860 0.000000e+00 2126
19 TraesCS1D01G277800 chr5D 96.196 920 32 3 2386 3302 299701014 299700095 0.000000e+00 1502
20 TraesCS1D01G277800 chr5D 96.183 917 34 1 2387 3302 139965300 139964384 0.000000e+00 1498
21 TraesCS1D01G277800 chr4D 89.701 1670 132 21 481 2125 482637264 482638918 0.000000e+00 2095
22 TraesCS1D01G277800 chr4D 96.510 917 30 2 2387 3302 117539785 117540700 0.000000e+00 1515
23 TraesCS1D01G277800 chr4D 91.691 337 27 1 1 336 326803095 326803431 1.790000e-127 466
24 TraesCS1D01G277800 chr3D 90.375 1600 126 7 487 2059 33752507 33750909 0.000000e+00 2076
25 TraesCS1D01G277800 chr4A 87.566 1705 155 18 693 2375 711114455 711112786 0.000000e+00 1921
26 TraesCS1D01G277800 chr4A 91.198 409 35 1 1 408 711115322 711114914 3.720000e-154 555
27 TraesCS1D01G277800 chr4A 87.500 368 44 2 409 774 711114875 711114508 1.100000e-114 424
28 TraesCS1D01G277800 chr5A 89.110 1506 137 7 904 2386 512902488 512900987 0.000000e+00 1847
29 TraesCS1D01G277800 chr5A 88.712 1506 141 8 904 2386 513079093 513077594 0.000000e+00 1812
30 TraesCS1D01G277800 chr5A 91.667 408 33 1 1 408 513080180 513079774 6.190000e-157 564
31 TraesCS1D01G277800 chr5A 86.863 510 50 9 409 906 513079735 513079231 3.720000e-154 555
32 TraesCS1D01G277800 chr5A 90.754 411 34 2 1 408 512903568 512903159 2.240000e-151 545
33 TraesCS1D01G277800 chr2D 97.056 917 26 1 2387 3302 551167613 551168529 0.000000e+00 1543
34 TraesCS1D01G277800 chr2D 96.623 918 30 1 2386 3302 446187919 446187002 0.000000e+00 1522
35 TraesCS1D01G277800 chr2D 96.619 917 30 1 2387 3302 497348438 497347522 0.000000e+00 1520
36 TraesCS1D01G277800 chr7B 91.133 406 35 1 1 405 682720408 682720813 1.730000e-152 549
37 TraesCS1D01G277800 chr3B 89.851 404 38 2 1 403 284528012 284528413 1.760000e-142 516
38 TraesCS1D01G277800 chr3B 90.217 368 33 2 409 774 284528457 284528823 8.290000e-131 477


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G277800 chr1D 375100913 375104214 3301 False 6098.000000 6098 100.000000 1 3302 1 chr1D.!!$F3 3301
1 TraesCS1D01G277800 chr1D 71517754 71519672 1918 False 2342.000000 2342 88.900000 481 2382 1 chr1D.!!$F1 1901
2 TraesCS1D01G277800 chr7D 63081817 63083733 1916 True 2514.000000 2514 90.521000 486 2382 1 chr7D.!!$R1 1896
3 TraesCS1D01G277800 chr7D 53130489 53132404 1915 False 2462.000000 2462 90.062000 481 2377 1 chr7D.!!$F1 1896
4 TraesCS1D01G277800 chr7D 169692147 169693793 1646 True 2104.000000 2104 89.892000 486 2125 1 chr7D.!!$R3 1639
5 TraesCS1D01G277800 chr7D 166280614 166282188 1574 True 1988.000000 1988 89.677000 828 2382 1 chr7D.!!$R2 1554
6 TraesCS1D01G277800 chr7D 203620635 203621551 916 False 1509.000000 1509 96.401000 2387 3302 1 chr7D.!!$F2 915
7 TraesCS1D01G277800 chr7D 572242109 572243025 916 True 1509.000000 1509 96.401000 2387 3302 1 chr7D.!!$R4 915
8 TraesCS1D01G277800 chr7D 422380626 422381543 917 False 1500.000000 1500 96.187000 2387 3302 1 chr7D.!!$F3 915
9 TraesCS1D01G277800 chr6B 426620781 426622693 1912 False 2460.000000 2460 90.057000 486 2382 1 chr6B.!!$F2 1896
10 TraesCS1D01G277800 chr6B 465507731 465509915 2184 False 1202.000000 1864 89.703000 1 2383 2 chr6B.!!$F3 2382
11 TraesCS1D01G277800 chr6D 411317537 411319449 1912 False 2398.000000 2398 89.471000 481 2382 1 chr6D.!!$F1 1901
12 TraesCS1D01G277800 chr6A 386079966 386081882 1916 True 2398.000000 2398 89.427000 486 2382 1 chr6A.!!$R1 1896
13 TraesCS1D01G277800 chr5D 374969801 374971696 1895 False 2385.000000 2385 89.529000 486 2372 1 chr5D.!!$F1 1886
14 TraesCS1D01G277800 chr5D 318601493 318603404 1911 True 2370.000000 2370 89.236000 486 2382 1 chr5D.!!$R3 1896
15 TraesCS1D01G277800 chr5D 534904860 534906310 1450 True 2126.000000 2126 93.113000 486 1936 1 chr5D.!!$R4 1450
16 TraesCS1D01G277800 chr5D 299700095 299701014 919 True 1502.000000 1502 96.196000 2386 3302 1 chr5D.!!$R2 916
17 TraesCS1D01G277800 chr5D 139964384 139965300 916 True 1498.000000 1498 96.183000 2387 3302 1 chr5D.!!$R1 915
18 TraesCS1D01G277800 chr4D 482637264 482638918 1654 False 2095.000000 2095 89.701000 481 2125 1 chr4D.!!$F3 1644
19 TraesCS1D01G277800 chr4D 117539785 117540700 915 False 1515.000000 1515 96.510000 2387 3302 1 chr4D.!!$F1 915
20 TraesCS1D01G277800 chr3D 33750909 33752507 1598 True 2076.000000 2076 90.375000 487 2059 1 chr3D.!!$R1 1572
21 TraesCS1D01G277800 chr4A 711112786 711115322 2536 True 966.666667 1921 88.754667 1 2375 3 chr4A.!!$R1 2374
22 TraesCS1D01G277800 chr5A 512900987 512903568 2581 True 1196.000000 1847 89.932000 1 2386 2 chr5A.!!$R1 2385
23 TraesCS1D01G277800 chr5A 513077594 513080180 2586 True 977.000000 1812 89.080667 1 2386 3 chr5A.!!$R2 2385
24 TraesCS1D01G277800 chr2D 551167613 551168529 916 False 1543.000000 1543 97.056000 2387 3302 1 chr2D.!!$F1 915
25 TraesCS1D01G277800 chr2D 446187002 446187919 917 True 1522.000000 1522 96.623000 2386 3302 1 chr2D.!!$R1 916
26 TraesCS1D01G277800 chr2D 497347522 497348438 916 True 1520.000000 1520 96.619000 2387 3302 1 chr2D.!!$R2 915
27 TraesCS1D01G277800 chr3B 284528012 284528823 811 False 496.500000 516 90.034000 1 774 2 chr3B.!!$F1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 166 1.405821 AGCTCCGCATGTCAGTAGTAC 59.594 52.381 0.00 0.0 0.00 2.73 F
1746 2250 0.396139 GCATGCCCCTTTCCATGAGA 60.396 55.000 6.36 0.0 40.92 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2387 0.737715 CCACCTGCTTCAGTAGTCGC 60.738 60.000 0.0 0.0 0.00 5.19 R
2828 3359 2.489255 GGTGAGACCGAGATCCCTATCA 60.489 54.545 0.0 0.0 34.28 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 152 2.871182 TACTGATGTTGCTAGCTCCG 57.129 50.000 17.23 3.99 0.00 4.63
161 166 1.405821 AGCTCCGCATGTCAGTAGTAC 59.594 52.381 0.00 0.00 0.00 2.73
169 174 5.402568 CCGCATGTCAGTAGTACACATATTC 59.597 44.000 2.52 0.00 0.00 1.75
220 227 3.403968 TGCCAAGTAGTTTGTTGCGATA 58.596 40.909 0.00 0.00 34.87 2.92
266 273 1.461127 CGCACAGCAGTTCTCCTAAAC 59.539 52.381 0.00 0.00 0.00 2.01
317 324 7.451877 TGTTACCTTAAACATCCATGCCTTTAA 59.548 33.333 0.00 0.00 34.50 1.52
405 412 2.047179 GGAGACACGCCCAAGACC 60.047 66.667 0.00 0.00 0.00 3.85
412 457 3.399181 CGCCCAAGACCCAGGCTA 61.399 66.667 0.00 0.00 44.84 3.93
450 495 4.021544 ACAGCACCTTTTCAAAGTGAAACA 60.022 37.500 2.96 0.00 45.03 2.83
451 496 5.111293 CAGCACCTTTTCAAAGTGAAACAT 58.889 37.500 2.96 0.00 45.03 2.71
603 660 2.887568 GCATGTCCACGCCTCTCG 60.888 66.667 0.00 0.00 45.38 4.04
604 661 2.887568 CATGTCCACGCCTCTCGC 60.888 66.667 0.00 0.00 43.23 5.03
605 662 3.071206 ATGTCCACGCCTCTCGCT 61.071 61.111 0.00 0.00 43.23 4.93
606 663 3.362399 ATGTCCACGCCTCTCGCTG 62.362 63.158 0.00 0.00 43.23 5.18
609 666 4.749310 CCACGCCTCTCGCTGCTT 62.749 66.667 0.00 0.00 43.23 3.91
610 667 3.184683 CACGCCTCTCGCTGCTTC 61.185 66.667 0.00 0.00 43.23 3.86
611 668 3.377759 ACGCCTCTCGCTGCTTCT 61.378 61.111 0.00 0.00 43.23 2.85
612 669 2.125753 CGCCTCTCGCTGCTTCTT 60.126 61.111 0.00 0.00 34.21 2.52
651 708 2.722188 GCGTCAGTTGCAACACGC 60.722 61.111 35.86 35.86 43.57 5.34
709 767 1.541233 CCTCCCAGCGAATGTATCACC 60.541 57.143 0.00 0.00 0.00 4.02
791 983 3.255149 CCACTTCAAGCATGCTTCTCTTT 59.745 43.478 29.81 10.76 33.42 2.52
888 1089 1.992170 ACTACGCAAGACAACGATCC 58.008 50.000 0.00 0.00 43.62 3.36
930 1411 7.863877 GGAGATACAACGGTTGTTAAAAACATT 59.136 33.333 29.22 5.30 42.22 2.71
1032 1522 2.333688 TGAAACCACGATCCACAACA 57.666 45.000 0.00 0.00 0.00 3.33
1033 1523 2.644676 TGAAACCACGATCCACAACAA 58.355 42.857 0.00 0.00 0.00 2.83
1176 1667 3.164268 CCACTCATTGTTCCCCATGAAA 58.836 45.455 0.00 0.00 33.94 2.69
1195 1687 4.540099 TGAAATACCAGGTTGAGGAGGAAT 59.460 41.667 0.00 0.00 0.00 3.01
1198 1690 6.848562 AATACCAGGTTGAGGAGGAATAAT 57.151 37.500 0.00 0.00 0.00 1.28
1228 1720 1.767759 CATGGGATTCACCAGGGAAC 58.232 55.000 0.00 0.00 45.20 3.62
1340 1837 1.666011 GACACCTCCAGTTCGAGCA 59.334 57.895 1.01 0.00 0.00 4.26
1350 1847 2.146342 CAGTTCGAGCACCACAAGATT 58.854 47.619 1.01 0.00 0.00 2.40
1363 1860 5.408299 CACCACAAGATTGTCGAAGTTGATA 59.592 40.000 0.00 0.00 39.91 2.15
1381 1878 3.131577 TGATATGGAGTACACCAACGACC 59.868 47.826 16.34 5.16 43.47 4.79
1413 1916 3.540367 GAAACCCGCCCTCGTCCAA 62.540 63.158 0.00 0.00 0.00 3.53
1653 2157 2.678934 TCCCTTGGGGACGTCTCG 60.679 66.667 16.46 0.00 46.17 4.04
1746 2250 0.396139 GCATGCCCCTTTCCATGAGA 60.396 55.000 6.36 0.00 40.92 3.27
1806 2310 0.760567 AGATATGGAGCCGCCTCACA 60.761 55.000 0.00 0.00 39.96 3.58
1810 2314 2.892425 GGAGCCGCCTCACAATCG 60.892 66.667 0.00 0.00 39.96 3.34
1821 2325 1.276421 CTCACAATCGTCCAGGAAGGT 59.724 52.381 2.14 0.00 39.02 3.50
1883 2387 2.363795 TAGGTCCTGGGGCGACTG 60.364 66.667 0.00 0.00 0.00 3.51
1906 2410 1.270907 CTACTGAAGCAGGTGGTCCT 58.729 55.000 0.00 0.00 46.37 3.85
1923 2427 3.561313 GGTCCTGGCCAAGAAAAGTATCA 60.561 47.826 7.01 0.00 0.00 2.15
1932 2436 7.233348 TGGCCAAGAAAAGTATCAAGAAGATTT 59.767 33.333 0.61 0.00 38.19 2.17
1947 2451 7.884877 TCAAGAAGATTTCTCTTGCCATTCTAA 59.115 33.333 7.54 0.00 41.87 2.10
1982 2486 7.521871 AGATTTGCTTTCTCTCAAGATTGTT 57.478 32.000 0.00 0.00 0.00 2.83
1991 2516 6.455360 TCTCTCAAGATTGTTGTTTGCTTT 57.545 33.333 0.00 0.00 0.00 3.51
2038 2563 6.389091 TGCTTGCAGTTTACATATCTTTTGG 58.611 36.000 0.00 0.00 0.00 3.28
2169 2696 2.479730 GGTCAGGTACACATAGCAGTCG 60.480 54.545 0.00 0.00 0.00 4.18
2206 2733 3.040147 TGCAGTGCACTAGTACCTTTC 57.960 47.619 21.20 1.21 31.71 2.62
2216 2743 4.081420 CACTAGTACCTTTCTGGATGCAGT 60.081 45.833 14.43 0.00 39.71 4.40
2280 2807 5.126222 TGGAGTGCACAATGTTCTAACAAAA 59.874 36.000 21.04 0.00 43.03 2.44
2327 2855 0.250295 TCGCCTGGAACACTTTGGAG 60.250 55.000 0.00 0.00 0.00 3.86
2636 3166 7.285629 AGGAAAAGCCAATACTATTAAGAAGGC 59.714 37.037 0.00 0.00 40.02 4.35
2796 3327 2.093973 CCGAGTTCAGTTGACATAGCCT 60.094 50.000 0.00 0.00 0.00 4.58
2820 3351 4.671831 TGCCAGAAACCCTAATCAATTCA 58.328 39.130 0.00 0.00 0.00 2.57
2828 3359 6.380079 AACCCTAATCAATTCAGTCTCACT 57.620 37.500 0.00 0.00 0.00 3.41
2950 3481 3.633525 TGCAATGCAAACTCTCTGTTTCT 59.366 39.130 5.01 0.00 46.11 2.52
3063 3594 4.304110 GTCTCACCGAGTTTGTGTAATCA 58.696 43.478 0.00 0.00 35.25 2.57
3135 3666 0.034896 GTTGACATGTCGGTCCCACT 59.965 55.000 20.54 0.00 36.97 4.00
3148 3679 2.838202 GGTCCCACTGAGAATCCTAACA 59.162 50.000 0.00 0.00 0.00 2.41
3156 3687 6.259608 CCACTGAGAATCCTAACATTCACATC 59.740 42.308 0.00 0.00 34.23 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 86 6.888632 ACCATAGCCATTCATTCTCCATTATC 59.111 38.462 0.00 0.00 0.00 1.75
147 152 7.168302 GTGAGAATATGTGTACTACTGACATGC 59.832 40.741 6.13 0.00 32.59 4.06
220 227 4.040952 AGACAGAGGTGTATGTTTGAGCTT 59.959 41.667 0.00 0.00 36.88 3.74
266 273 1.604593 CAGGGGAAGGCACTGGTTG 60.605 63.158 0.00 0.00 40.86 3.77
317 324 7.066525 TGGACGTCTGTTTTAAGATTCACTTTT 59.933 33.333 16.46 0.00 39.72 2.27
405 412 3.475566 TTAGCAGCATAAGTAGCCTGG 57.524 47.619 0.00 0.00 0.00 4.45
459 504 3.371168 CCCGTGTTCTGTCAAATGTTTG 58.629 45.455 0.00 0.00 39.48 2.93
603 660 3.366719 GACAGAAACAACAAGAAGCAGC 58.633 45.455 0.00 0.00 0.00 5.25
604 661 3.378112 TGGACAGAAACAACAAGAAGCAG 59.622 43.478 0.00 0.00 0.00 4.24
605 662 3.351740 TGGACAGAAACAACAAGAAGCA 58.648 40.909 0.00 0.00 0.00 3.91
606 663 4.276926 AGATGGACAGAAACAACAAGAAGC 59.723 41.667 0.00 0.00 0.00 3.86
607 664 5.528690 TGAGATGGACAGAAACAACAAGAAG 59.471 40.000 0.00 0.00 0.00 2.85
608 665 5.436175 TGAGATGGACAGAAACAACAAGAA 58.564 37.500 0.00 0.00 0.00 2.52
609 666 5.034852 TGAGATGGACAGAAACAACAAGA 57.965 39.130 0.00 0.00 0.00 3.02
610 667 5.954296 ATGAGATGGACAGAAACAACAAG 57.046 39.130 0.00 0.00 0.00 3.16
611 668 5.412594 GCTATGAGATGGACAGAAACAACAA 59.587 40.000 0.00 0.00 0.00 2.83
612 669 4.937620 GCTATGAGATGGACAGAAACAACA 59.062 41.667 0.00 0.00 0.00 3.33
651 708 2.016318 TCAGAGGCACTGTTGTTTGTG 58.984 47.619 11.71 0.00 45.86 3.33
709 767 3.502211 ACTAGGAGTGGCAATTGTTTTCG 59.498 43.478 7.40 0.00 0.00 3.46
866 1067 3.185797 GGATCGTTGTCTTGCGTAGTTTT 59.814 43.478 0.00 0.00 0.00 2.43
1032 1522 1.008995 GCGGTTGTGCACATCGTTT 60.009 52.632 30.12 0.00 34.15 3.60
1033 1523 2.183504 TGCGGTTGTGCACATCGTT 61.184 52.632 30.12 0.00 40.62 3.85
1176 1667 6.605119 CAATTATTCCTCCTCAACCTGGTAT 58.395 40.000 0.00 0.00 0.00 2.73
1228 1720 2.124403 GGCCTGCACCTCCATGAG 60.124 66.667 0.00 0.00 0.00 2.90
1340 1837 3.804036 TCAACTTCGACAATCTTGTGGT 58.196 40.909 0.00 0.00 42.43 4.16
1350 1847 5.393787 GGTGTACTCCATATCAACTTCGACA 60.394 44.000 9.12 0.00 0.00 4.35
1363 1860 1.344065 TGGTCGTTGGTGTACTCCAT 58.656 50.000 17.02 0.00 37.33 3.41
1381 1878 2.159338 CGGGTTTCTGATCTTTGCCATG 60.159 50.000 0.00 0.00 0.00 3.66
1413 1916 1.668101 GATCCTTGCCGACGGAGAGT 61.668 60.000 20.50 0.00 31.82 3.24
1653 2157 1.745489 GTCGTGGACAAGGATGCCC 60.745 63.158 0.00 0.00 32.09 5.36
1737 2241 3.181500 CGTACTCGATGTGTCTCATGGAA 60.181 47.826 0.00 0.00 39.92 3.53
1746 2250 2.202570 GCCGCGTACTCGATGTGT 60.203 61.111 6.86 0.00 39.71 3.72
1774 2278 1.045477 CATATCTCGTACGCAGCGTG 58.955 55.000 30.67 14.90 41.39 5.34
1806 2310 1.196012 GGAGACCTTCCTGGACGATT 58.804 55.000 1.08 0.00 43.16 3.34
1810 2314 2.579738 GCGGAGACCTTCCTGGAC 59.420 66.667 0.00 0.00 44.41 4.02
1850 2354 3.356639 CTAGCGCGCTTCCTGGACA 62.357 63.158 41.04 17.90 0.00 4.02
1883 2387 0.737715 CCACCTGCTTCAGTAGTCGC 60.738 60.000 0.00 0.00 0.00 5.19
1906 2410 5.630121 TCTTCTTGATACTTTTCTTGGCCA 58.370 37.500 0.00 0.00 0.00 5.36
1923 2427 8.641498 TTTAGAATGGCAAGAGAAATCTTCTT 57.359 30.769 0.00 0.00 40.87 2.52
1932 2436 8.585471 AATGAGAAATTTAGAATGGCAAGAGA 57.415 30.769 0.00 0.00 0.00 3.10
1982 2486 4.286910 GTTATCTGCGACAAAAGCAAACA 58.713 39.130 0.00 0.00 44.67 2.83
1991 2516 4.530710 ACTACAAGGTTATCTGCGACAA 57.469 40.909 0.00 0.00 0.00 3.18
2038 2563 6.215845 ACATTGCACTGGAAATAAACTTGTC 58.784 36.000 9.06 0.00 0.00 3.18
2147 2674 1.831736 ACTGCTATGTGTACCTGACCC 59.168 52.381 0.00 0.00 0.00 4.46
2149 2676 2.422479 TCGACTGCTATGTGTACCTGAC 59.578 50.000 0.00 0.00 0.00 3.51
2150 2677 2.422479 GTCGACTGCTATGTGTACCTGA 59.578 50.000 8.70 0.00 0.00 3.86
2169 2696 1.266718 TGCATGCTCGTCCTTTTTGTC 59.733 47.619 20.33 0.00 0.00 3.18
2206 2733 2.079158 ACATTTCGACACTGCATCCAG 58.921 47.619 0.00 0.00 44.80 3.86
2216 2743 3.755112 TGTTGTCCCTACATTTCGACA 57.245 42.857 0.00 0.00 34.97 4.35
2258 2785 6.033341 TGTTTTGTTAGAACATTGTGCACTC 58.967 36.000 19.41 6.67 38.95 3.51
2280 2807 5.440234 TTTTAATACCGTGTGTGCAATGT 57.560 34.783 0.00 0.00 0.00 2.71
2311 2839 2.930950 TGTTCTCCAAAGTGTTCCAGG 58.069 47.619 0.00 0.00 0.00 4.45
2312 2840 5.520376 AAATGTTCTCCAAAGTGTTCCAG 57.480 39.130 0.00 0.00 0.00 3.86
2399 2928 0.774908 TACCAAAACCACCCAGGGAG 59.225 55.000 14.54 3.50 43.89 4.30
2486 3015 3.578978 TCTAATCCATGCCATGCCAAAT 58.421 40.909 0.00 0.00 0.00 2.32
2636 3166 6.318144 AGAATCTCATTAAGCAACACCTCATG 59.682 38.462 0.00 0.00 0.00 3.07
2796 3327 4.591321 ATTGATTAGGGTTTCTGGCAGA 57.409 40.909 14.43 14.43 0.00 4.26
2820 3351 3.497763 CCGAGATCCCTATCAGTGAGACT 60.498 52.174 0.00 0.00 34.28 3.24
2828 3359 2.489255 GGTGAGACCGAGATCCCTATCA 60.489 54.545 0.00 0.00 34.28 2.15
2950 3481 4.691860 TGGACCAAAACGTTACGAAAAA 57.308 36.364 13.03 0.00 0.00 1.94
3063 3594 4.497674 GCATAACGTAATCTCGGTGAGACT 60.498 45.833 0.00 0.00 41.76 3.24
3135 3666 7.623630 TCAAGATGTGAATGTTAGGATTCTCA 58.376 34.615 0.00 0.00 39.13 3.27
3156 3687 2.928116 GGTCGGACCGATTAAGTTCAAG 59.072 50.000 21.53 0.00 38.42 3.02
3224 3755 4.917906 AGCCTCCAGACAAAATCTAACT 57.082 40.909 0.00 0.00 35.15 2.24
3237 3768 6.163389 GTGGAGGGGTATATATAGCCTCCAG 61.163 52.000 34.10 0.00 46.44 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.