Multiple sequence alignment - TraesCS1D01G275700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G275700 chr1D 100.000 4248 0 0 1 4248 371744410 371740163 0.000000e+00 7845.0
1 TraesCS1D01G275700 chr1D 96.329 681 23 2 1 680 467782615 467781936 0.000000e+00 1118.0
2 TraesCS1D01G275700 chr1D 95.888 681 25 3 1 680 216318970 216319648 0.000000e+00 1099.0
3 TraesCS1D01G275700 chr1D 95.614 684 25 3 1 683 480621020 480621699 0.000000e+00 1092.0
4 TraesCS1D01G275700 chr1A 93.297 2715 111 26 685 3377 471483397 471480732 0.000000e+00 3940.0
5 TraesCS1D01G275700 chr1A 86.504 452 49 8 3649 4093 471480695 471480249 1.780000e-133 486.0
6 TraesCS1D01G275700 chr1A 82.686 283 27 11 3727 4009 471473947 471473687 9.190000e-57 231.0
7 TraesCS1D01G275700 chr1A 84.483 58 9 0 3758 3815 128636897 128636840 1.650000e-04 58.4
8 TraesCS1D01G275700 chr1B 91.238 2043 110 39 1374 3378 496506380 496504369 0.000000e+00 2717.0
9 TraesCS1D01G275700 chr1B 93.482 537 18 6 685 1209 496507107 496506576 0.000000e+00 782.0
10 TraesCS1D01G275700 chr1B 85.069 509 57 11 3649 4142 496504141 496503637 6.340000e-138 501.0
11 TraesCS1D01G275700 chr7D 95.627 686 27 2 1 685 613856601 613857284 0.000000e+00 1098.0
12 TraesCS1D01G275700 chr7D 95.608 683 28 2 1 682 162016308 162016989 0.000000e+00 1094.0
13 TraesCS1D01G275700 chr7D 95.474 685 29 2 1 684 66102542 66101859 0.000000e+00 1092.0
14 TraesCS1D01G275700 chr7D 82.707 266 27 3 3399 3646 519616702 519616438 7.150000e-53 219.0
15 TraesCS1D01G275700 chr5D 95.494 688 28 3 1 687 441123779 441124464 0.000000e+00 1096.0
16 TraesCS1D01G275700 chr5D 93.182 44 3 0 3591 3634 502367109 502367152 9.860000e-07 65.8
17 TraesCS1D01G275700 chr2D 95.608 683 28 2 1 682 34884743 34885424 0.000000e+00 1094.0
18 TraesCS1D01G275700 chr2D 95.474 685 29 2 1 684 623789616 623790299 0.000000e+00 1092.0
19 TraesCS1D01G275700 chr3A 80.439 956 164 12 1906 2848 623776827 623777772 0.000000e+00 708.0
20 TraesCS1D01G275700 chr3A 89.804 255 18 3 3399 3651 38261820 38261572 1.910000e-83 320.0
21 TraesCS1D01G275700 chr3A 85.714 56 8 0 3591 3646 476397452 476397397 4.590000e-05 60.2
22 TraesCS1D01G275700 chr3B 80.230 956 166 12 1906 2848 641804494 641805439 0.000000e+00 697.0
23 TraesCS1D01G275700 chr3D 79.749 958 167 16 1906 2848 480969237 480970182 0.000000e+00 669.0
24 TraesCS1D01G275700 chrUn 90.196 255 22 2 3399 3651 92850509 92850256 3.170000e-86 329.0
25 TraesCS1D01G275700 chr7B 88.889 252 24 3 3399 3647 552787752 552787502 1.480000e-79 307.0
26 TraesCS1D01G275700 chr7B 88.123 261 24 6 3399 3655 553056009 553055752 1.920000e-78 303.0
27 TraesCS1D01G275700 chr5B 89.928 139 14 0 3399 3537 361254250 361254388 3.370000e-41 180.0
28 TraesCS1D01G275700 chr4B 95.238 42 2 0 3591 3632 626004837 626004878 2.740000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G275700 chr1D 371740163 371744410 4247 True 7845.000000 7845 100.000000 1 4248 1 chr1D.!!$R1 4247
1 TraesCS1D01G275700 chr1D 467781936 467782615 679 True 1118.000000 1118 96.329000 1 680 1 chr1D.!!$R2 679
2 TraesCS1D01G275700 chr1D 216318970 216319648 678 False 1099.000000 1099 95.888000 1 680 1 chr1D.!!$F1 679
3 TraesCS1D01G275700 chr1D 480621020 480621699 679 False 1092.000000 1092 95.614000 1 683 1 chr1D.!!$F2 682
4 TraesCS1D01G275700 chr1A 471480249 471483397 3148 True 2213.000000 3940 89.900500 685 4093 2 chr1A.!!$R3 3408
5 TraesCS1D01G275700 chr1B 496503637 496507107 3470 True 1333.333333 2717 89.929667 685 4142 3 chr1B.!!$R1 3457
6 TraesCS1D01G275700 chr7D 613856601 613857284 683 False 1098.000000 1098 95.627000 1 685 1 chr7D.!!$F2 684
7 TraesCS1D01G275700 chr7D 162016308 162016989 681 False 1094.000000 1094 95.608000 1 682 1 chr7D.!!$F1 681
8 TraesCS1D01G275700 chr7D 66101859 66102542 683 True 1092.000000 1092 95.474000 1 684 1 chr7D.!!$R1 683
9 TraesCS1D01G275700 chr5D 441123779 441124464 685 False 1096.000000 1096 95.494000 1 687 1 chr5D.!!$F1 686
10 TraesCS1D01G275700 chr2D 34884743 34885424 681 False 1094.000000 1094 95.608000 1 682 1 chr2D.!!$F1 681
11 TraesCS1D01G275700 chr2D 623789616 623790299 683 False 1092.000000 1092 95.474000 1 684 1 chr2D.!!$F2 683
12 TraesCS1D01G275700 chr3A 623776827 623777772 945 False 708.000000 708 80.439000 1906 2848 1 chr3A.!!$F1 942
13 TraesCS1D01G275700 chr3B 641804494 641805439 945 False 697.000000 697 80.230000 1906 2848 1 chr3B.!!$F1 942
14 TraesCS1D01G275700 chr3D 480969237 480970182 945 False 669.000000 669 79.749000 1906 2848 1 chr3D.!!$F1 942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 347 1.070601 TGCAGCAGTACAGCTCTGAAA 59.929 47.619 10.18 0.0 44.54 2.69 F
1522 1661 0.320771 GTCGGCTGTCCAATGTGTCT 60.321 55.000 0.00 0.0 0.00 3.41 F
1523 1662 0.396435 TCGGCTGTCCAATGTGTCTT 59.604 50.000 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2080 0.743345 GCGGGAGGTTGTTCGCTATT 60.743 55.0 0.00 0.0 44.10 1.73 R
2978 3146 0.180171 TGGTCCCGATCGATTTGCAT 59.820 50.0 18.66 0.0 0.00 3.96 R
3440 3623 0.666374 GGCGGTGTATTGTAATGCCC 59.334 55.0 0.00 0.0 35.01 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 107 2.180769 CGATGACGGTGCCTTCGA 59.819 61.111 0.00 0.00 34.44 3.71
206 210 1.586422 CATTGATGACGGCGGATCTT 58.414 50.000 13.24 0.00 0.00 2.40
236 240 2.878429 CAGTGTAGACTCGGCGCT 59.122 61.111 7.64 0.00 0.00 5.92
343 347 1.070601 TGCAGCAGTACAGCTCTGAAA 59.929 47.619 10.18 0.00 44.54 2.69
411 415 1.153066 TGGTTGAGAAGCACGCCAA 60.153 52.632 0.00 0.00 33.29 4.52
467 471 4.019231 GGTTGGGACCTCAAGTCTTAGATT 60.019 45.833 0.00 0.00 45.54 2.40
542 546 6.935240 CCTACATCAACTGGATAGGGATAA 57.065 41.667 0.00 0.00 33.95 1.75
673 678 1.379146 GGGTCGCCCTCCTTTTCTT 59.621 57.895 7.58 0.00 41.34 2.52
786 791 2.232298 GAAGGAGTGGCCGTCTGAGG 62.232 65.000 4.97 0.00 41.37 3.86
881 886 3.088941 TAATCTGACCTGCCGCCCG 62.089 63.158 0.00 0.00 0.00 6.13
914 919 1.897398 CTCCCATATAAACGCGCGGC 61.897 60.000 35.22 0.00 0.00 6.53
1049 1060 2.356793 GAGGATGATCGCTGCCGG 60.357 66.667 0.00 0.00 34.56 6.13
1079 1096 3.147629 TCTTCGACTCGTCTTCTTCCTT 58.852 45.455 0.00 0.00 0.00 3.36
1129 1146 3.598715 CAGGTACGGCCGGCGATA 61.599 66.667 31.76 12.60 43.70 2.92
1138 1155 3.974757 CCGGCGATACCTCCGTCC 61.975 72.222 9.30 0.00 43.87 4.79
1169 1186 0.739462 TCCATCTTTCGCGCGTGATT 60.739 50.000 30.98 9.42 0.00 2.57
1170 1187 0.927537 CCATCTTTCGCGCGTGATTA 59.072 50.000 30.98 13.57 0.00 1.75
1171 1188 1.326245 CCATCTTTCGCGCGTGATTAA 59.674 47.619 30.98 14.68 0.00 1.40
1261 1278 3.476295 TTCTGGTACGCTTGTAGTACG 57.524 47.619 0.00 0.00 43.81 3.67
1262 1279 2.698803 TCTGGTACGCTTGTAGTACGA 58.301 47.619 0.00 0.00 43.81 3.43
1263 1280 3.073678 TCTGGTACGCTTGTAGTACGAA 58.926 45.455 0.00 0.00 43.81 3.85
1264 1281 3.501828 TCTGGTACGCTTGTAGTACGAAA 59.498 43.478 0.00 0.00 43.81 3.46
1265 1282 4.023279 TCTGGTACGCTTGTAGTACGAAAA 60.023 41.667 0.00 0.00 43.81 2.29
1266 1283 4.229096 TGGTACGCTTGTAGTACGAAAAG 58.771 43.478 1.71 1.71 43.81 2.27
1271 1288 5.523369 ACGCTTGTAGTACGAAAAGTAAGT 58.477 37.500 7.62 3.73 37.02 2.24
1276 1293 7.148836 GCTTGTAGTACGAAAAGTAAGTCCTTC 60.149 40.741 7.62 0.00 37.02 3.46
1286 1303 5.757850 AAGTAAGTCCTTCAAAGCTGTTG 57.242 39.130 0.00 0.00 0.00 3.33
1322 1340 6.756074 GTGTTTCCAGTTTTGAACATTGATGA 59.244 34.615 0.00 0.00 34.86 2.92
1323 1341 7.277539 GTGTTTCCAGTTTTGAACATTGATGAA 59.722 33.333 0.00 0.00 34.86 2.57
1325 1343 8.663911 GTTTCCAGTTTTGAACATTGATGAAAA 58.336 29.630 0.00 0.00 0.00 2.29
1326 1344 8.783833 TTCCAGTTTTGAACATTGATGAAAAA 57.216 26.923 0.00 0.32 0.00 1.94
1372 1392 5.941948 AATTAACTGACGCTGCTTTAGTT 57.058 34.783 17.83 17.83 35.86 2.24
1440 1551 2.869233 ATGCCGTATCATGCAAAACC 57.131 45.000 0.00 0.00 41.50 3.27
1522 1661 0.320771 GTCGGCTGTCCAATGTGTCT 60.321 55.000 0.00 0.00 0.00 3.41
1523 1662 0.396435 TCGGCTGTCCAATGTGTCTT 59.604 50.000 0.00 0.00 0.00 3.01
1524 1663 1.202758 TCGGCTGTCCAATGTGTCTTT 60.203 47.619 0.00 0.00 0.00 2.52
1525 1664 1.069022 CGGCTGTCCAATGTGTCTTTG 60.069 52.381 0.00 0.00 0.00 2.77
1526 1665 2.229792 GGCTGTCCAATGTGTCTTTGA 58.770 47.619 0.00 0.00 0.00 2.69
1543 1682 6.106673 GTCTTTGATTTGATAGGGAAGACGA 58.893 40.000 0.00 0.00 34.31 4.20
1544 1683 6.256757 GTCTTTGATTTGATAGGGAAGACGAG 59.743 42.308 0.00 0.00 34.31 4.18
1603 1742 1.281925 ACATCATCCCTGTGACCCCC 61.282 60.000 0.00 0.00 0.00 5.40
1623 1767 3.496515 CCCCTTTGAAACCATGCACATTT 60.497 43.478 0.00 0.00 0.00 2.32
1636 1780 6.071221 ACCATGCACATTTGATATTGACACTT 60.071 34.615 0.00 0.00 0.00 3.16
1842 1993 4.675976 TTGACCTTCTCTTTTGGACGTA 57.324 40.909 0.00 0.00 0.00 3.57
1928 2080 1.743623 CGGCATCAACTACGGCCAA 60.744 57.895 2.24 0.00 46.75 4.52
2397 2561 1.807573 CTGGACTTTCTCGCCGAGC 60.808 63.158 9.77 0.00 0.00 5.03
2943 3107 3.586892 ACGGTAAGTAAGAAAGCTCTGC 58.413 45.455 0.00 0.00 30.03 4.26
2945 3109 4.184629 CGGTAAGTAAGAAAGCTCTGCAT 58.815 43.478 0.00 0.00 30.03 3.96
3016 3184 4.490743 ACCAAAACTGTTCCAAAAAGACG 58.509 39.130 0.00 0.00 0.00 4.18
3019 3187 5.336744 CAAAACTGTTCCAAAAAGACGCTA 58.663 37.500 0.00 0.00 0.00 4.26
3020 3188 5.570234 AAACTGTTCCAAAAAGACGCTAA 57.430 34.783 0.00 0.00 0.00 3.09
3023 3191 5.758924 ACTGTTCCAAAAAGACGCTAAATC 58.241 37.500 0.00 0.00 0.00 2.17
3030 3198 6.147821 TCCAAAAAGACGCTAAATCTTCTCAG 59.852 38.462 0.00 0.00 35.31 3.35
3087 3255 3.383185 CCTAACAAGGTGGAAAAACTGCA 59.617 43.478 0.00 0.00 0.00 4.41
3088 3256 2.959507 ACAAGGTGGAAAAACTGCAC 57.040 45.000 0.00 0.00 45.25 4.57
3089 3257 2.456577 ACAAGGTGGAAAAACTGCACT 58.543 42.857 0.00 0.00 45.30 4.40
3090 3258 2.427095 ACAAGGTGGAAAAACTGCACTC 59.573 45.455 0.00 0.00 45.30 3.51
3091 3259 1.308998 AGGTGGAAAAACTGCACTCG 58.691 50.000 0.00 0.00 45.30 4.18
3167 3340 1.727335 GTCGCTGTTTCTAAGCTCACC 59.273 52.381 0.00 0.00 38.57 4.02
3177 3350 7.202526 TGTTTCTAAGCTCACCATTTTCTTTG 58.797 34.615 0.00 0.00 0.00 2.77
3227 3410 2.369015 TGGGGGTGGTTGTCCTGT 60.369 61.111 0.00 0.00 34.23 4.00
3258 3441 6.459298 GCATTTCTCTTGTAATCACCATCCAG 60.459 42.308 0.00 0.00 0.00 3.86
3263 3446 5.491070 TCTTGTAATCACCATCCAGAAGTG 58.509 41.667 0.00 0.00 0.00 3.16
3292 3475 4.038402 AGGCATTTAGCTATTGTGATTGGC 59.962 41.667 0.00 0.00 44.79 4.52
3377 3560 4.952460 TGTTCTCGCACTAGGTAAGTTTT 58.048 39.130 0.00 0.00 35.76 2.43
3407 3590 7.830099 CTGAAAGGGAGGCAAATCTATTAAT 57.170 36.000 0.00 0.00 0.00 1.40
3408 3591 8.242729 CTGAAAGGGAGGCAAATCTATTAATT 57.757 34.615 0.00 0.00 0.00 1.40
3409 3592 9.354673 CTGAAAGGGAGGCAAATCTATTAATTA 57.645 33.333 0.00 0.00 0.00 1.40
3410 3593 9.707957 TGAAAGGGAGGCAAATCTATTAATTAA 57.292 29.630 0.00 0.00 0.00 1.40
3413 3596 9.579932 AAGGGAGGCAAATCTATTAATTAAGAG 57.420 33.333 12.69 12.69 0.00 2.85
3414 3597 8.949421 AGGGAGGCAAATCTATTAATTAAGAGA 58.051 33.333 21.41 21.41 37.85 3.10
3415 3598 9.225436 GGGAGGCAAATCTATTAATTAAGAGAG 57.775 37.037 22.92 13.43 37.02 3.20
3432 3615 9.981460 ATTAAGAGAGAATAGAATTTGTTGGGT 57.019 29.630 0.00 0.00 0.00 4.51
3433 3616 9.807921 TTAAGAGAGAATAGAATTTGTTGGGTT 57.192 29.630 0.00 0.00 0.00 4.11
3435 3618 8.794335 AGAGAGAATAGAATTTGTTGGGTTAC 57.206 34.615 0.00 0.00 0.00 2.50
3436 3619 8.383175 AGAGAGAATAGAATTTGTTGGGTTACA 58.617 33.333 0.00 0.00 0.00 2.41
3437 3620 8.567285 AGAGAATAGAATTTGTTGGGTTACAG 57.433 34.615 0.00 0.00 0.00 2.74
3438 3621 8.164070 AGAGAATAGAATTTGTTGGGTTACAGT 58.836 33.333 0.00 0.00 0.00 3.55
3439 3622 9.444600 GAGAATAGAATTTGTTGGGTTACAGTA 57.555 33.333 0.00 0.00 0.00 2.74
3440 3623 9.449719 AGAATAGAATTTGTTGGGTTACAGTAG 57.550 33.333 0.00 0.00 0.00 2.57
3441 3624 8.575649 AATAGAATTTGTTGGGTTACAGTAGG 57.424 34.615 0.00 0.00 0.00 3.18
3442 3625 5.321927 AGAATTTGTTGGGTTACAGTAGGG 58.678 41.667 0.00 0.00 0.00 3.53
3443 3626 2.572209 TTGTTGGGTTACAGTAGGGC 57.428 50.000 0.00 0.00 0.00 5.19
3444 3627 1.436326 TGTTGGGTTACAGTAGGGCA 58.564 50.000 0.00 0.00 0.00 5.36
3445 3628 1.989586 TGTTGGGTTACAGTAGGGCAT 59.010 47.619 0.00 0.00 0.00 4.40
3446 3629 2.377193 TGTTGGGTTACAGTAGGGCATT 59.623 45.455 0.00 0.00 0.00 3.56
3447 3630 3.587951 TGTTGGGTTACAGTAGGGCATTA 59.412 43.478 0.00 0.00 0.00 1.90
3448 3631 3.918294 TGGGTTACAGTAGGGCATTAC 57.082 47.619 0.00 0.00 0.00 1.89
3449 3632 3.182976 TGGGTTACAGTAGGGCATTACA 58.817 45.455 1.99 0.00 0.00 2.41
3450 3633 3.587951 TGGGTTACAGTAGGGCATTACAA 59.412 43.478 1.99 0.00 0.00 2.41
3451 3634 4.228666 TGGGTTACAGTAGGGCATTACAAT 59.771 41.667 1.99 0.00 0.00 2.71
3452 3635 5.429109 TGGGTTACAGTAGGGCATTACAATA 59.571 40.000 1.99 0.00 0.00 1.90
3453 3636 5.761726 GGGTTACAGTAGGGCATTACAATAC 59.238 44.000 1.99 0.00 0.00 1.89
3454 3637 6.350906 GGTTACAGTAGGGCATTACAATACA 58.649 40.000 1.99 0.00 0.00 2.29
3455 3638 6.259387 GGTTACAGTAGGGCATTACAATACAC 59.741 42.308 1.99 0.00 0.00 2.90
3456 3639 4.777463 ACAGTAGGGCATTACAATACACC 58.223 43.478 1.99 0.00 0.00 4.16
3457 3640 3.807622 CAGTAGGGCATTACAATACACCG 59.192 47.826 1.99 0.00 0.00 4.94
3458 3641 1.675552 AGGGCATTACAATACACCGC 58.324 50.000 0.00 0.00 0.00 5.68
3459 3642 0.666374 GGGCATTACAATACACCGCC 59.334 55.000 0.00 0.00 37.33 6.13
3460 3643 1.384525 GGCATTACAATACACCGCCA 58.615 50.000 0.00 0.00 37.98 5.69
3461 3644 1.746220 GGCATTACAATACACCGCCAA 59.254 47.619 0.00 0.00 37.98 4.52
3462 3645 2.360801 GGCATTACAATACACCGCCAAT 59.639 45.455 0.00 0.00 37.98 3.16
3463 3646 3.566322 GGCATTACAATACACCGCCAATA 59.434 43.478 0.00 0.00 37.98 1.90
3464 3647 4.533222 GCATTACAATACACCGCCAATAC 58.467 43.478 0.00 0.00 0.00 1.89
3465 3648 4.035792 GCATTACAATACACCGCCAATACA 59.964 41.667 0.00 0.00 0.00 2.29
3466 3649 5.449314 GCATTACAATACACCGCCAATACAA 60.449 40.000 0.00 0.00 0.00 2.41
3467 3650 6.556212 CATTACAATACACCGCCAATACAAA 58.444 36.000 0.00 0.00 0.00 2.83
3468 3651 6.761099 TTACAATACACCGCCAATACAAAT 57.239 33.333 0.00 0.00 0.00 2.32
3469 3652 4.992688 ACAATACACCGCCAATACAAATG 58.007 39.130 0.00 0.00 0.00 2.32
3470 3653 4.142271 ACAATACACCGCCAATACAAATGG 60.142 41.667 0.00 0.00 41.08 3.16
3471 3654 1.917872 ACACCGCCAATACAAATGGT 58.082 45.000 0.00 0.00 40.23 3.55
3472 3655 1.816224 ACACCGCCAATACAAATGGTC 59.184 47.619 0.00 0.00 40.23 4.02
3473 3656 1.815613 CACCGCCAATACAAATGGTCA 59.184 47.619 0.00 0.00 40.23 4.02
3474 3657 2.426738 CACCGCCAATACAAATGGTCAT 59.573 45.455 0.00 0.00 40.23 3.06
3475 3658 3.096092 ACCGCCAATACAAATGGTCATT 58.904 40.909 0.00 0.00 40.23 2.57
3476 3659 4.097135 CACCGCCAATACAAATGGTCATTA 59.903 41.667 0.00 0.00 40.23 1.90
3477 3660 4.097286 ACCGCCAATACAAATGGTCATTAC 59.903 41.667 0.00 0.00 40.23 1.89
3478 3661 4.338118 CCGCCAATACAAATGGTCATTACT 59.662 41.667 0.00 0.00 40.23 2.24
3479 3662 5.505654 CCGCCAATACAAATGGTCATTACTC 60.506 44.000 0.00 0.00 40.23 2.59
3480 3663 5.296780 CGCCAATACAAATGGTCATTACTCT 59.703 40.000 0.00 0.00 40.23 3.24
3481 3664 6.511767 CGCCAATACAAATGGTCATTACTCTC 60.512 42.308 0.00 0.00 40.23 3.20
3482 3665 6.543831 GCCAATACAAATGGTCATTACTCTCT 59.456 38.462 0.00 0.00 40.23 3.10
3483 3666 7.067494 GCCAATACAAATGGTCATTACTCTCTT 59.933 37.037 0.00 0.00 40.23 2.85
3484 3667 8.400947 CCAATACAAATGGTCATTACTCTCTTG 58.599 37.037 0.00 0.00 33.08 3.02
3485 3668 8.400947 CAATACAAATGGTCATTACTCTCTTGG 58.599 37.037 0.00 0.00 0.00 3.61
3486 3669 4.702131 ACAAATGGTCATTACTCTCTTGGC 59.298 41.667 0.00 0.00 0.00 4.52
3487 3670 4.574674 AATGGTCATTACTCTCTTGGCA 57.425 40.909 0.00 0.00 0.00 4.92
3488 3671 4.785346 ATGGTCATTACTCTCTTGGCAT 57.215 40.909 0.00 0.00 0.00 4.40
3489 3672 4.142609 TGGTCATTACTCTCTTGGCATC 57.857 45.455 0.00 0.00 0.00 3.91
3490 3673 3.519107 TGGTCATTACTCTCTTGGCATCA 59.481 43.478 0.00 0.00 0.00 3.07
3491 3674 4.164796 TGGTCATTACTCTCTTGGCATCAT 59.835 41.667 0.00 0.00 0.00 2.45
3492 3675 5.366477 TGGTCATTACTCTCTTGGCATCATA 59.634 40.000 0.00 0.00 0.00 2.15
3493 3676 5.931146 GGTCATTACTCTCTTGGCATCATAG 59.069 44.000 0.00 0.00 0.00 2.23
3494 3677 6.463614 GGTCATTACTCTCTTGGCATCATAGT 60.464 42.308 0.00 0.00 0.00 2.12
3495 3678 7.255977 GGTCATTACTCTCTTGGCATCATAGTA 60.256 40.741 0.00 0.00 0.00 1.82
3496 3679 7.596995 GTCATTACTCTCTTGGCATCATAGTAC 59.403 40.741 0.00 0.00 0.00 2.73
3497 3680 4.946478 ACTCTCTTGGCATCATAGTACC 57.054 45.455 0.00 0.00 0.00 3.34
3498 3681 3.643792 ACTCTCTTGGCATCATAGTACCC 59.356 47.826 0.00 0.00 0.00 3.69
3499 3682 3.643320 CTCTCTTGGCATCATAGTACCCA 59.357 47.826 0.00 0.00 0.00 4.51
3500 3683 4.037222 TCTCTTGGCATCATAGTACCCAA 58.963 43.478 0.00 0.00 34.63 4.12
3502 3685 4.156455 CTTGGCATCATAGTACCCAAGT 57.844 45.455 13.62 0.00 44.62 3.16
3503 3686 3.558931 TGGCATCATAGTACCCAAGTG 57.441 47.619 0.00 0.00 0.00 3.16
3504 3687 2.843730 TGGCATCATAGTACCCAAGTGT 59.156 45.455 0.00 0.00 0.00 3.55
3505 3688 3.265737 TGGCATCATAGTACCCAAGTGTT 59.734 43.478 0.00 0.00 0.00 3.32
3506 3689 4.263727 TGGCATCATAGTACCCAAGTGTTT 60.264 41.667 0.00 0.00 0.00 2.83
3507 3690 4.096382 GGCATCATAGTACCCAAGTGTTTG 59.904 45.833 0.00 0.00 0.00 2.93
3518 3701 3.525221 GTGTTTGGCACCTGCTGT 58.475 55.556 0.00 0.00 42.10 4.40
3527 3710 4.579127 ACCTGCTGTGACCCAAAC 57.421 55.556 0.00 0.00 0.00 2.93
3528 3711 1.152756 ACCTGCTGTGACCCAAACC 60.153 57.895 0.00 0.00 0.00 3.27
3529 3712 2.260869 CCTGCTGTGACCCAAACCG 61.261 63.158 0.00 0.00 0.00 4.44
3530 3713 2.904866 TGCTGTGACCCAAACCGC 60.905 61.111 0.00 0.00 0.00 5.68
3531 3714 3.670377 GCTGTGACCCAAACCGCC 61.670 66.667 0.00 0.00 0.00 6.13
3532 3715 3.353836 CTGTGACCCAAACCGCCG 61.354 66.667 0.00 0.00 0.00 6.46
3539 3722 4.038080 CCAAACCGCCGCCTCAAC 62.038 66.667 0.00 0.00 0.00 3.18
3540 3723 4.038080 CAAACCGCCGCCTCAACC 62.038 66.667 0.00 0.00 0.00 3.77
3541 3724 4.265056 AAACCGCCGCCTCAACCT 62.265 61.111 0.00 0.00 0.00 3.50
3542 3725 3.785122 AAACCGCCGCCTCAACCTT 62.785 57.895 0.00 0.00 0.00 3.50
3544 3727 4.697756 CCGCCGCCTCAACCTTGA 62.698 66.667 0.00 0.00 35.57 3.02
3545 3728 2.436646 CGCCGCCTCAACCTTGAT 60.437 61.111 0.00 0.00 36.46 2.57
3546 3729 1.153449 CGCCGCCTCAACCTTGATA 60.153 57.895 0.00 0.00 36.46 2.15
3547 3730 0.532862 CGCCGCCTCAACCTTGATAT 60.533 55.000 0.00 0.00 36.46 1.63
3548 3731 1.680338 GCCGCCTCAACCTTGATATT 58.320 50.000 0.00 0.00 36.46 1.28
3549 3732 1.334869 GCCGCCTCAACCTTGATATTG 59.665 52.381 0.00 0.00 36.46 1.90
3550 3733 1.334869 CCGCCTCAACCTTGATATTGC 59.665 52.381 0.00 0.00 36.46 3.56
3551 3734 2.292267 CGCCTCAACCTTGATATTGCT 58.708 47.619 0.00 0.00 36.46 3.91
3552 3735 3.466836 CGCCTCAACCTTGATATTGCTA 58.533 45.455 0.00 0.00 36.46 3.49
3553 3736 3.876914 CGCCTCAACCTTGATATTGCTAA 59.123 43.478 0.00 0.00 36.46 3.09
3554 3737 4.024556 CGCCTCAACCTTGATATTGCTAAG 60.025 45.833 0.00 0.00 36.46 2.18
3555 3738 4.261363 GCCTCAACCTTGATATTGCTAAGC 60.261 45.833 0.00 0.00 36.46 3.09
3556 3739 4.883585 CCTCAACCTTGATATTGCTAAGCA 59.116 41.667 0.00 0.00 36.46 3.91
3557 3740 5.008415 CCTCAACCTTGATATTGCTAAGCAG 59.992 44.000 0.00 0.00 36.83 4.24
3558 3741 4.883585 TCAACCTTGATATTGCTAAGCAGG 59.116 41.667 0.00 0.00 34.08 4.85
3559 3742 4.778213 ACCTTGATATTGCTAAGCAGGA 57.222 40.909 0.00 0.00 40.61 3.86
3560 3743 4.455606 ACCTTGATATTGCTAAGCAGGAC 58.544 43.478 0.00 0.00 40.61 3.85
3561 3744 3.817647 CCTTGATATTGCTAAGCAGGACC 59.182 47.826 0.00 0.00 40.61 4.46
3562 3745 4.454678 CTTGATATTGCTAAGCAGGACCA 58.545 43.478 0.00 0.00 40.61 4.02
3563 3746 4.712051 TGATATTGCTAAGCAGGACCAT 57.288 40.909 0.00 0.00 40.61 3.55
3564 3747 4.645535 TGATATTGCTAAGCAGGACCATC 58.354 43.478 0.00 0.00 40.61 3.51
3565 3748 1.959042 ATTGCTAAGCAGGACCATCG 58.041 50.000 0.00 0.00 40.61 3.84
3566 3749 0.107703 TTGCTAAGCAGGACCATCGG 60.108 55.000 0.00 0.00 40.61 4.18
3567 3750 0.975556 TGCTAAGCAGGACCATCGGA 60.976 55.000 0.00 0.00 33.32 4.55
3568 3751 0.249657 GCTAAGCAGGACCATCGGAG 60.250 60.000 0.00 0.00 0.00 4.63
3569 3752 0.390860 CTAAGCAGGACCATCGGAGG 59.609 60.000 0.00 0.00 0.00 4.30
3570 3753 1.048724 TAAGCAGGACCATCGGAGGG 61.049 60.000 7.23 7.23 0.00 4.30
3571 3754 2.764128 GCAGGACCATCGGAGGGA 60.764 66.667 16.70 0.00 0.00 4.20
3572 3755 2.143419 GCAGGACCATCGGAGGGAT 61.143 63.158 16.70 0.00 35.09 3.85
3580 3763 2.338577 CATCGGAGGGATGCTCTTTT 57.661 50.000 0.00 0.00 45.57 2.27
3581 3764 1.945394 CATCGGAGGGATGCTCTTTTG 59.055 52.381 0.00 0.00 45.57 2.44
3582 3765 1.275666 TCGGAGGGATGCTCTTTTGA 58.724 50.000 0.00 0.00 0.00 2.69
3583 3766 1.066143 TCGGAGGGATGCTCTTTTGAC 60.066 52.381 0.00 0.00 0.00 3.18
3584 3767 1.373570 GGAGGGATGCTCTTTTGACG 58.626 55.000 0.00 0.00 0.00 4.35
3585 3768 1.373570 GAGGGATGCTCTTTTGACGG 58.626 55.000 0.00 0.00 0.00 4.79
3586 3769 0.035056 AGGGATGCTCTTTTGACGGG 60.035 55.000 0.00 0.00 0.00 5.28
3587 3770 0.035439 GGGATGCTCTTTTGACGGGA 60.035 55.000 0.00 0.00 0.00 5.14
3588 3771 1.373570 GGATGCTCTTTTGACGGGAG 58.626 55.000 0.00 0.00 0.00 4.30
3589 3772 1.066143 GGATGCTCTTTTGACGGGAGA 60.066 52.381 0.00 0.00 0.00 3.71
3590 3773 2.003301 GATGCTCTTTTGACGGGAGAC 58.997 52.381 0.00 0.00 0.00 3.36
3600 3783 4.598257 CGGGAGACGTGCATTTCT 57.402 55.556 0.00 0.00 37.93 2.52
3601 3784 2.840974 CGGGAGACGTGCATTTCTT 58.159 52.632 0.00 0.00 37.93 2.52
3602 3785 1.156736 CGGGAGACGTGCATTTCTTT 58.843 50.000 0.00 0.00 37.93 2.52
3603 3786 1.128692 CGGGAGACGTGCATTTCTTTC 59.871 52.381 0.00 0.00 37.93 2.62
3604 3787 2.151202 GGGAGACGTGCATTTCTTTCA 58.849 47.619 0.00 0.00 0.00 2.69
3605 3788 2.749621 GGGAGACGTGCATTTCTTTCAT 59.250 45.455 0.00 0.00 0.00 2.57
3606 3789 3.191371 GGGAGACGTGCATTTCTTTCATT 59.809 43.478 0.00 0.00 0.00 2.57
3607 3790 4.321230 GGGAGACGTGCATTTCTTTCATTT 60.321 41.667 0.00 0.00 0.00 2.32
3608 3791 4.853743 GGAGACGTGCATTTCTTTCATTTC 59.146 41.667 0.00 0.00 0.00 2.17
3609 3792 5.437289 AGACGTGCATTTCTTTCATTTCA 57.563 34.783 0.00 0.00 0.00 2.69
3610 3793 5.830912 AGACGTGCATTTCTTTCATTTCAA 58.169 33.333 0.00 0.00 0.00 2.69
3611 3794 6.272318 AGACGTGCATTTCTTTCATTTCAAA 58.728 32.000 0.00 0.00 0.00 2.69
3612 3795 6.925165 AGACGTGCATTTCTTTCATTTCAAAT 59.075 30.769 0.00 0.00 0.00 2.32
3613 3796 6.879962 ACGTGCATTTCTTTCATTTCAAATG 58.120 32.000 3.46 3.46 38.65 2.32
3614 3797 6.073657 ACGTGCATTTCTTTCATTTCAAATGG 60.074 34.615 10.30 0.00 36.93 3.16
3615 3798 6.073657 CGTGCATTTCTTTCATTTCAAATGGT 60.074 34.615 10.30 0.00 36.93 3.55
3616 3799 7.293018 GTGCATTTCTTTCATTTCAAATGGTC 58.707 34.615 10.30 0.00 36.93 4.02
3617 3800 6.427547 TGCATTTCTTTCATTTCAAATGGTCC 59.572 34.615 10.30 0.00 36.93 4.46
3618 3801 6.427547 GCATTTCTTTCATTTCAAATGGTCCA 59.572 34.615 10.30 0.00 36.93 4.02
3619 3802 7.041235 GCATTTCTTTCATTTCAAATGGTCCAA 60.041 33.333 10.30 0.00 36.93 3.53
3620 3803 8.500773 CATTTCTTTCATTTCAAATGGTCCAAG 58.499 33.333 10.30 7.78 34.10 3.61
3621 3804 6.975196 TCTTTCATTTCAAATGGTCCAAGA 57.025 33.333 10.30 9.66 0.00 3.02
3622 3805 6.985117 TCTTTCATTTCAAATGGTCCAAGAG 58.015 36.000 10.30 0.00 0.00 2.85
3623 3806 6.777091 TCTTTCATTTCAAATGGTCCAAGAGA 59.223 34.615 10.30 0.00 0.00 3.10
3624 3807 7.452501 TCTTTCATTTCAAATGGTCCAAGAGAT 59.547 33.333 10.30 0.00 0.00 2.75
3625 3808 8.648698 TTTCATTTCAAATGGTCCAAGAGATA 57.351 30.769 10.30 0.00 0.00 1.98
3626 3809 8.648698 TTCATTTCAAATGGTCCAAGAGATAA 57.351 30.769 10.30 0.00 0.00 1.75
3627 3810 8.284945 TCATTTCAAATGGTCCAAGAGATAAG 57.715 34.615 10.30 0.00 0.00 1.73
3628 3811 6.515272 TTTCAAATGGTCCAAGAGATAAGC 57.485 37.500 0.00 0.00 0.00 3.09
3629 3812 5.178096 TCAAATGGTCCAAGAGATAAGCA 57.822 39.130 0.00 0.00 0.00 3.91
3630 3813 5.759059 TCAAATGGTCCAAGAGATAAGCAT 58.241 37.500 0.00 0.00 0.00 3.79
3631 3814 5.591472 TCAAATGGTCCAAGAGATAAGCATG 59.409 40.000 0.00 0.00 30.82 4.06
3632 3815 3.565764 TGGTCCAAGAGATAAGCATGG 57.434 47.619 0.00 0.00 0.00 3.66
3633 3816 2.846206 TGGTCCAAGAGATAAGCATGGT 59.154 45.455 0.00 0.00 32.90 3.55
3634 3817 3.266772 TGGTCCAAGAGATAAGCATGGTT 59.733 43.478 15.47 15.47 32.90 3.67
3635 3818 4.473196 TGGTCCAAGAGATAAGCATGGTTA 59.527 41.667 18.95 18.95 32.90 2.85
3636 3819 5.045213 TGGTCCAAGAGATAAGCATGGTTAA 60.045 40.000 20.35 5.50 32.90 2.01
3637 3820 5.297029 GGTCCAAGAGATAAGCATGGTTAAC 59.703 44.000 20.35 17.48 32.90 2.01
3638 3821 5.006746 GTCCAAGAGATAAGCATGGTTAACG 59.993 44.000 20.35 6.05 32.90 3.18
3639 3822 5.105106 TCCAAGAGATAAGCATGGTTAACGA 60.105 40.000 20.35 8.08 32.90 3.85
3640 3823 5.584649 CCAAGAGATAAGCATGGTTAACGAA 59.415 40.000 20.35 0.30 0.00 3.85
3641 3824 6.238211 CCAAGAGATAAGCATGGTTAACGAAG 60.238 42.308 20.35 10.69 0.00 3.79
3642 3825 4.811557 AGAGATAAGCATGGTTAACGAAGC 59.188 41.667 20.35 9.47 0.00 3.86
3643 3826 3.877508 AGATAAGCATGGTTAACGAAGCC 59.122 43.478 20.35 5.40 31.75 4.35
3644 3827 1.904287 AAGCATGGTTAACGAAGCCA 58.096 45.000 8.73 0.00 36.64 4.75
3645 3828 2.128771 AGCATGGTTAACGAAGCCAT 57.871 45.000 13.21 1.81 43.14 4.40
3646 3829 2.017049 AGCATGGTTAACGAAGCCATC 58.983 47.619 13.21 0.58 40.68 3.51
3685 4060 4.985538 TTTCAAGGGCAAACTCGTTTTA 57.014 36.364 0.00 0.00 0.00 1.52
3697 4073 7.544217 GGCAAACTCGTTTTATTTGTGGATAAT 59.456 33.333 0.00 0.00 36.04 1.28
3758 4142 3.253188 ACAACATGCAACACACTCATACC 59.747 43.478 0.00 0.00 0.00 2.73
3770 4154 4.813161 CACACTCATACCCTATGAAAGCAG 59.187 45.833 0.00 0.00 43.98 4.24
3772 4156 5.367937 ACACTCATACCCTATGAAAGCAGAT 59.632 40.000 0.00 0.00 43.98 2.90
3780 4164 6.845908 ACCCTATGAAAGCAGATATGAACAT 58.154 36.000 0.00 0.00 0.00 2.71
3781 4165 6.939163 ACCCTATGAAAGCAGATATGAACATC 59.061 38.462 0.00 0.00 0.00 3.06
3826 4210 3.520290 AATTGAGCCGACACGATCTTA 57.480 42.857 0.00 0.00 0.00 2.10
3830 4214 4.224715 TGAGCCGACACGATCTTATTAG 57.775 45.455 0.00 0.00 0.00 1.73
3865 4249 3.046285 GAGACATCTCGAAGTCGACAG 57.954 52.381 19.50 6.29 44.22 3.51
3866 4250 1.740585 AGACATCTCGAAGTCGACAGG 59.259 52.381 19.50 6.25 44.22 4.00
3891 4275 6.854892 GCATGTCATACAAGTGAATGAATAGC 59.145 38.462 0.00 0.00 34.06 2.97
3893 4277 6.106003 TGTCATACAAGTGAATGAATAGCGT 58.894 36.000 0.00 0.00 34.06 5.07
3900 4284 6.128282 ACAAGTGAATGAATAGCGTCGAAAAT 60.128 34.615 0.00 0.00 0.00 1.82
3921 4305 4.678509 TCTTGAAAATATGCGACCACAC 57.321 40.909 0.00 0.00 0.00 3.82
3923 4307 1.735018 TGAAAATATGCGACCACACGG 59.265 47.619 0.00 0.00 38.77 4.94
3931 4315 2.203294 GACCACACGGGCCAAGTT 60.203 61.111 4.39 0.00 42.05 2.66
3934 4318 2.637025 CACACGGGCCAAGTTTCG 59.363 61.111 4.39 0.00 0.00 3.46
3951 4335 3.762407 TTCGGACTTGAATCCTTGTGA 57.238 42.857 0.00 0.00 36.52 3.58
3952 4336 3.762407 TCGGACTTGAATCCTTGTGAA 57.238 42.857 0.00 0.00 36.52 3.18
4024 4411 3.021269 TCGTCGCAAAGTGATACAACT 57.979 42.857 0.00 0.00 0.00 3.16
4029 4416 2.665519 CGCAAAGTGATACAACTGCACC 60.666 50.000 0.00 0.00 33.14 5.01
4045 4432 1.142474 CACCGAGTGTAAAACCGTCC 58.858 55.000 0.00 0.00 0.00 4.79
4080 4467 9.031360 ACTAGATGCACATAAACATACTTTACG 57.969 33.333 0.00 0.00 0.00 3.18
4081 4468 6.715464 AGATGCACATAAACATACTTTACGC 58.285 36.000 0.00 0.00 0.00 4.42
4082 4469 5.864628 TGCACATAAACATACTTTACGCA 57.135 34.783 0.00 0.00 0.00 5.24
4084 4471 6.669278 TGCACATAAACATACTTTACGCAAA 58.331 32.000 0.00 0.00 0.00 3.68
4085 4472 6.579292 TGCACATAAACATACTTTACGCAAAC 59.421 34.615 0.00 0.00 0.00 2.93
4116 4503 3.004752 ACTGGGCACTGTTCCATAATC 57.995 47.619 0.00 0.00 31.95 1.75
4121 4508 4.141597 TGGGCACTGTTCCATAATCGAATA 60.142 41.667 0.00 0.00 0.00 1.75
4127 4514 6.147821 CACTGTTCCATAATCGAATACCCATC 59.852 42.308 0.00 0.00 0.00 3.51
4130 4517 4.816392 TCCATAATCGAATACCCATCGTG 58.184 43.478 0.00 0.00 40.99 4.35
4142 4529 4.825546 ACCCATCGTGAATACTACGTAG 57.174 45.455 20.97 20.97 41.91 3.51
4143 4530 3.567164 ACCCATCGTGAATACTACGTAGG 59.433 47.826 25.63 8.78 41.91 3.18
4144 4531 3.567164 CCCATCGTGAATACTACGTAGGT 59.433 47.826 25.63 13.86 41.91 3.08
4145 4532 4.534168 CCATCGTGAATACTACGTAGGTG 58.466 47.826 25.63 4.16 41.91 4.00
4146 4533 4.274214 CCATCGTGAATACTACGTAGGTGA 59.726 45.833 25.63 11.51 41.91 4.02
4147 4534 5.220912 CCATCGTGAATACTACGTAGGTGAA 60.221 44.000 25.63 9.26 41.91 3.18
4148 4535 6.436261 CATCGTGAATACTACGTAGGTGAAT 58.564 40.000 25.63 11.04 41.91 2.57
4149 4536 7.308169 CCATCGTGAATACTACGTAGGTGAATA 60.308 40.741 25.63 9.64 41.91 1.75
4150 4537 6.948353 TCGTGAATACTACGTAGGTGAATAC 58.052 40.000 25.63 15.24 41.91 1.89
4151 4538 6.763135 TCGTGAATACTACGTAGGTGAATACT 59.237 38.462 25.63 5.49 41.91 2.12
4152 4539 7.926018 TCGTGAATACTACGTAGGTGAATACTA 59.074 37.037 25.63 7.55 41.91 1.82
4153 4540 8.219769 CGTGAATACTACGTAGGTGAATACTAG 58.780 40.741 25.63 0.00 36.83 2.57
4154 4541 9.265901 GTGAATACTACGTAGGTGAATACTAGA 57.734 37.037 25.63 0.00 0.00 2.43
4155 4542 9.486497 TGAATACTACGTAGGTGAATACTAGAG 57.514 37.037 25.63 0.00 0.00 2.43
4156 4543 7.903995 ATACTACGTAGGTGAATACTAGAGC 57.096 40.000 25.63 0.00 0.00 4.09
4157 4544 5.927819 ACTACGTAGGTGAATACTAGAGCT 58.072 41.667 25.63 0.00 0.00 4.09
4158 4545 6.355747 ACTACGTAGGTGAATACTAGAGCTT 58.644 40.000 25.63 0.00 0.00 3.74
4159 4546 5.502153 ACGTAGGTGAATACTAGAGCTTG 57.498 43.478 0.00 0.00 0.00 4.01
4160 4547 4.948621 ACGTAGGTGAATACTAGAGCTTGT 59.051 41.667 0.00 0.00 0.00 3.16
4161 4548 5.163642 ACGTAGGTGAATACTAGAGCTTGTG 60.164 44.000 0.00 0.00 0.00 3.33
4162 4549 4.130286 AGGTGAATACTAGAGCTTGTGC 57.870 45.455 0.00 0.00 40.05 4.57
4163 4550 3.515502 AGGTGAATACTAGAGCTTGTGCA 59.484 43.478 0.00 0.00 42.74 4.57
4164 4551 3.619038 GGTGAATACTAGAGCTTGTGCAC 59.381 47.826 10.75 10.75 42.74 4.57
4165 4552 4.245660 GTGAATACTAGAGCTTGTGCACA 58.754 43.478 17.42 17.42 42.74 4.57
4166 4553 4.872691 GTGAATACTAGAGCTTGTGCACAT 59.127 41.667 22.39 5.59 42.74 3.21
4167 4554 5.006165 GTGAATACTAGAGCTTGTGCACATC 59.994 44.000 22.39 15.60 42.74 3.06
4168 4555 4.743057 ATACTAGAGCTTGTGCACATCA 57.257 40.909 22.39 5.59 42.74 3.07
4169 4556 3.623906 ACTAGAGCTTGTGCACATCAT 57.376 42.857 22.39 9.22 42.74 2.45
4170 4557 3.268330 ACTAGAGCTTGTGCACATCATG 58.732 45.455 22.39 13.62 42.74 3.07
4171 4558 2.484742 AGAGCTTGTGCACATCATGA 57.515 45.000 22.39 3.88 42.74 3.07
4172 4559 2.357075 AGAGCTTGTGCACATCATGAG 58.643 47.619 22.39 15.62 42.74 2.90
4173 4560 1.400846 GAGCTTGTGCACATCATGAGG 59.599 52.381 22.39 5.68 42.74 3.86
4174 4561 1.003928 AGCTTGTGCACATCATGAGGA 59.996 47.619 22.39 1.35 42.74 3.71
4175 4562 1.400846 GCTTGTGCACATCATGAGGAG 59.599 52.381 22.39 13.31 39.41 3.69
4176 4563 2.938314 GCTTGTGCACATCATGAGGAGA 60.938 50.000 22.39 0.00 39.41 3.71
4177 4564 2.685850 TGTGCACATCATGAGGAGAG 57.314 50.000 17.42 4.72 0.00 3.20
4178 4565 1.297664 GTGCACATCATGAGGAGAGC 58.702 55.000 15.42 14.56 0.00 4.09
4179 4566 1.134461 GTGCACATCATGAGGAGAGCT 60.134 52.381 15.42 0.00 0.00 4.09
4180 4567 1.134491 TGCACATCATGAGGAGAGCTG 60.134 52.381 15.42 2.33 0.00 4.24
4181 4568 1.810794 GCACATCATGAGGAGAGCTGG 60.811 57.143 15.42 0.00 0.00 4.85
4182 4569 1.485480 CACATCATGAGGAGAGCTGGT 59.515 52.381 15.42 0.00 0.00 4.00
4183 4570 1.485480 ACATCATGAGGAGAGCTGGTG 59.515 52.381 15.42 0.00 0.00 4.17
4184 4571 1.129917 ATCATGAGGAGAGCTGGTGG 58.870 55.000 0.09 0.00 0.00 4.61
4185 4572 0.252421 TCATGAGGAGAGCTGGTGGT 60.252 55.000 0.00 0.00 0.00 4.16
4186 4573 0.177604 CATGAGGAGAGCTGGTGGTC 59.822 60.000 0.00 0.00 40.70 4.02
4187 4574 0.980231 ATGAGGAGAGCTGGTGGTCC 60.980 60.000 0.00 0.00 41.26 4.46
4188 4575 1.610673 GAGGAGAGCTGGTGGTCCA 60.611 63.158 0.00 0.00 41.26 4.02
4198 4585 1.639722 TGGTGGTCCAGATTTCGAGA 58.360 50.000 0.00 0.00 39.03 4.04
4199 4586 1.550524 TGGTGGTCCAGATTTCGAGAG 59.449 52.381 0.00 0.00 39.03 3.20
4200 4587 1.550976 GGTGGTCCAGATTTCGAGAGT 59.449 52.381 0.00 0.00 0.00 3.24
4201 4588 2.758979 GGTGGTCCAGATTTCGAGAGTA 59.241 50.000 0.00 0.00 0.00 2.59
4202 4589 3.385111 GGTGGTCCAGATTTCGAGAGTAT 59.615 47.826 0.00 0.00 0.00 2.12
4203 4590 4.141914 GGTGGTCCAGATTTCGAGAGTATT 60.142 45.833 0.00 0.00 0.00 1.89
4204 4591 5.420409 GTGGTCCAGATTTCGAGAGTATTT 58.580 41.667 0.00 0.00 0.00 1.40
4205 4592 5.875359 GTGGTCCAGATTTCGAGAGTATTTT 59.125 40.000 0.00 0.00 0.00 1.82
4206 4593 5.874810 TGGTCCAGATTTCGAGAGTATTTTG 59.125 40.000 0.00 0.00 0.00 2.44
4207 4594 6.106673 GGTCCAGATTTCGAGAGTATTTTGA 58.893 40.000 0.00 0.00 0.00 2.69
4208 4595 6.036191 GGTCCAGATTTCGAGAGTATTTTGAC 59.964 42.308 0.00 0.00 0.00 3.18
4209 4596 6.590292 GTCCAGATTTCGAGAGTATTTTGACA 59.410 38.462 0.00 0.00 0.00 3.58
4210 4597 7.278868 GTCCAGATTTCGAGAGTATTTTGACAT 59.721 37.037 0.00 0.00 0.00 3.06
4211 4598 7.278646 TCCAGATTTCGAGAGTATTTTGACATG 59.721 37.037 0.00 0.00 0.00 3.21
4212 4599 7.278646 CCAGATTTCGAGAGTATTTTGACATGA 59.721 37.037 0.00 0.00 0.00 3.07
4213 4600 8.326713 CAGATTTCGAGAGTATTTTGACATGAG 58.673 37.037 0.00 0.00 0.00 2.90
4214 4601 8.253810 AGATTTCGAGAGTATTTTGACATGAGA 58.746 33.333 0.00 0.00 0.00 3.27
4215 4602 7.818493 TTTCGAGAGTATTTTGACATGAGAG 57.182 36.000 0.00 0.00 0.00 3.20
4216 4603 5.344066 TCGAGAGTATTTTGACATGAGAGC 58.656 41.667 0.00 0.00 0.00 4.09
4217 4604 4.505922 CGAGAGTATTTTGACATGAGAGCC 59.494 45.833 0.00 0.00 0.00 4.70
4218 4605 5.423015 GAGAGTATTTTGACATGAGAGCCA 58.577 41.667 0.00 0.00 0.00 4.75
4219 4606 5.809001 AGAGTATTTTGACATGAGAGCCAA 58.191 37.500 0.00 0.00 0.00 4.52
4220 4607 6.240894 AGAGTATTTTGACATGAGAGCCAAA 58.759 36.000 0.00 0.00 0.00 3.28
4221 4608 6.716628 AGAGTATTTTGACATGAGAGCCAAAA 59.283 34.615 0.00 8.16 41.04 2.44
4222 4609 6.681777 AGTATTTTGACATGAGAGCCAAAAC 58.318 36.000 0.00 0.00 40.06 2.43
4223 4610 4.998671 TTTTGACATGAGAGCCAAAACA 57.001 36.364 0.00 0.00 34.70 2.83
4224 4611 4.572985 TTTGACATGAGAGCCAAAACAG 57.427 40.909 0.00 0.00 0.00 3.16
4225 4612 3.490439 TGACATGAGAGCCAAAACAGA 57.510 42.857 0.00 0.00 0.00 3.41
4226 4613 4.025040 TGACATGAGAGCCAAAACAGAT 57.975 40.909 0.00 0.00 0.00 2.90
4227 4614 4.401022 TGACATGAGAGCCAAAACAGATT 58.599 39.130 0.00 0.00 0.00 2.40
4228 4615 4.216902 TGACATGAGAGCCAAAACAGATTG 59.783 41.667 0.00 0.00 0.00 2.67
4229 4616 4.401022 ACATGAGAGCCAAAACAGATTGA 58.599 39.130 0.00 0.00 31.84 2.57
4230 4617 4.458295 ACATGAGAGCCAAAACAGATTGAG 59.542 41.667 0.00 0.00 31.84 3.02
4231 4618 2.816087 TGAGAGCCAAAACAGATTGAGC 59.184 45.455 0.00 0.00 31.84 4.26
4232 4619 2.163211 GAGAGCCAAAACAGATTGAGCC 59.837 50.000 0.00 0.00 31.84 4.70
4233 4620 1.888512 GAGCCAAAACAGATTGAGCCA 59.111 47.619 0.00 0.00 31.84 4.75
4234 4621 1.891150 AGCCAAAACAGATTGAGCCAG 59.109 47.619 0.00 0.00 31.84 4.85
4235 4622 1.067354 GCCAAAACAGATTGAGCCAGG 60.067 52.381 0.00 0.00 31.84 4.45
4236 4623 2.242043 CCAAAACAGATTGAGCCAGGT 58.758 47.619 0.00 0.00 31.84 4.00
4237 4624 2.629617 CCAAAACAGATTGAGCCAGGTT 59.370 45.455 0.00 0.00 31.84 3.50
4238 4625 3.826157 CCAAAACAGATTGAGCCAGGTTA 59.174 43.478 0.00 0.00 31.84 2.85
4239 4626 4.321230 CCAAAACAGATTGAGCCAGGTTAC 60.321 45.833 0.00 0.00 31.84 2.50
4240 4627 4.373156 AAACAGATTGAGCCAGGTTACT 57.627 40.909 0.00 0.00 0.00 2.24
4241 4628 5.499004 AAACAGATTGAGCCAGGTTACTA 57.501 39.130 0.00 0.00 0.00 1.82
4242 4629 5.700402 AACAGATTGAGCCAGGTTACTAT 57.300 39.130 0.00 0.00 0.00 2.12
4243 4630 6.808321 AACAGATTGAGCCAGGTTACTATA 57.192 37.500 0.00 0.00 0.00 1.31
4244 4631 6.163135 ACAGATTGAGCCAGGTTACTATAC 57.837 41.667 0.00 0.00 0.00 1.47
4245 4632 5.661312 ACAGATTGAGCCAGGTTACTATACA 59.339 40.000 0.00 0.00 0.00 2.29
4246 4633 6.156256 ACAGATTGAGCCAGGTTACTATACAA 59.844 38.462 0.00 0.00 0.00 2.41
4247 4634 7.047891 CAGATTGAGCCAGGTTACTATACAAA 58.952 38.462 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.322816 ACCTGCAACATCGATGCCTT 60.323 50.000 25.11 10.30 43.16 4.35
15 16 1.888512 GGTTGATGTGACCTGCAACAT 59.111 47.619 1.37 1.37 41.65 2.71
224 228 0.382158 CTCATCAAGCGCCGAGTCTA 59.618 55.000 2.29 0.00 0.00 2.59
236 240 1.478510 GAGTCCTTCTCCGCTCATCAA 59.521 52.381 0.00 0.00 37.22 2.57
298 302 2.463589 CTTGCCCGGTCTAACTGCCA 62.464 60.000 0.00 0.00 0.00 4.92
343 347 0.615544 CCACCTGCCACCAATCCATT 60.616 55.000 0.00 0.00 0.00 3.16
364 368 1.522355 CAGGTATGAGGCCACAGCG 60.522 63.158 9.30 0.00 41.24 5.18
367 371 2.998097 GCCAGGTATGAGGCCACA 59.002 61.111 4.98 4.98 45.18 4.17
467 471 0.109723 ACCTCGCAGCCAAACCTAAA 59.890 50.000 0.00 0.00 0.00 1.85
542 546 3.498397 CCAAACTAAGCAACATCTGTCGT 59.502 43.478 0.00 0.00 0.00 4.34
786 791 2.863809 AGGCCAACGAAATATCCATCC 58.136 47.619 5.01 0.00 0.00 3.51
794 799 0.179094 TCGCGATAGGCCAACGAAAT 60.179 50.000 3.71 0.00 38.94 2.17
1079 1096 1.917282 AGGAGGCAGAGCAGAAGCA 60.917 57.895 0.00 0.00 45.49 3.91
1129 1146 3.069318 GAAGCGAGGGACGGAGGT 61.069 66.667 0.00 0.00 42.83 3.85
1138 1155 0.543749 AAGATGGAAGGGAAGCGAGG 59.456 55.000 0.00 0.00 0.00 4.63
1213 1230 4.799564 AACAGAAGCACCAACTCAAAAA 57.200 36.364 0.00 0.00 0.00 1.94
1214 1231 4.799564 AAACAGAAGCACCAACTCAAAA 57.200 36.364 0.00 0.00 0.00 2.44
1215 1232 4.799564 AAAACAGAAGCACCAACTCAAA 57.200 36.364 0.00 0.00 0.00 2.69
1216 1233 4.799564 AAAAACAGAAGCACCAACTCAA 57.200 36.364 0.00 0.00 0.00 3.02
1242 1259 2.698803 TCGTACTACAAGCGTACCAGA 58.301 47.619 0.00 0.00 35.06 3.86
1243 1260 3.476295 TTCGTACTACAAGCGTACCAG 57.524 47.619 0.00 0.00 35.06 4.00
1245 1262 4.229876 ACTTTTCGTACTACAAGCGTACC 58.770 43.478 0.00 0.00 35.06 3.34
1246 1263 6.578919 ACTTACTTTTCGTACTACAAGCGTAC 59.421 38.462 0.00 0.00 35.15 3.67
1247 1264 6.668323 ACTTACTTTTCGTACTACAAGCGTA 58.332 36.000 0.00 0.00 0.00 4.42
1248 1265 5.523369 ACTTACTTTTCGTACTACAAGCGT 58.477 37.500 0.00 0.00 0.00 5.07
1249 1266 5.060200 GGACTTACTTTTCGTACTACAAGCG 59.940 44.000 0.00 0.00 0.00 4.68
1250 1267 6.155136 AGGACTTACTTTTCGTACTACAAGC 58.845 40.000 0.00 0.00 0.00 4.01
1252 1269 7.715657 TGAAGGACTTACTTTTCGTACTACAA 58.284 34.615 0.00 0.00 0.00 2.41
1253 1270 7.275888 TGAAGGACTTACTTTTCGTACTACA 57.724 36.000 0.00 0.00 0.00 2.74
1254 1271 8.579682 TTTGAAGGACTTACTTTTCGTACTAC 57.420 34.615 0.00 0.00 0.00 2.73
1255 1272 7.383300 GCTTTGAAGGACTTACTTTTCGTACTA 59.617 37.037 0.00 0.00 0.00 1.82
1256 1273 6.202379 GCTTTGAAGGACTTACTTTTCGTACT 59.798 38.462 0.00 0.00 0.00 2.73
1257 1274 6.202379 AGCTTTGAAGGACTTACTTTTCGTAC 59.798 38.462 0.00 0.00 0.00 3.67
1258 1275 6.202188 CAGCTTTGAAGGACTTACTTTTCGTA 59.798 38.462 0.00 0.00 0.00 3.43
1259 1276 5.007724 CAGCTTTGAAGGACTTACTTTTCGT 59.992 40.000 0.00 0.00 0.00 3.85
1260 1277 5.007724 ACAGCTTTGAAGGACTTACTTTTCG 59.992 40.000 0.00 0.00 0.00 3.46
1261 1278 6.378710 ACAGCTTTGAAGGACTTACTTTTC 57.621 37.500 0.00 0.00 0.00 2.29
1262 1279 6.564328 CAACAGCTTTGAAGGACTTACTTTT 58.436 36.000 3.41 0.00 0.00 2.27
1263 1280 5.450550 GCAACAGCTTTGAAGGACTTACTTT 60.451 40.000 11.34 0.00 0.00 2.66
1264 1281 4.036852 GCAACAGCTTTGAAGGACTTACTT 59.963 41.667 11.34 0.00 0.00 2.24
1265 1282 3.565902 GCAACAGCTTTGAAGGACTTACT 59.434 43.478 11.34 0.00 0.00 2.24
1266 1283 3.565902 AGCAACAGCTTTGAAGGACTTAC 59.434 43.478 11.34 0.00 34.18 2.34
1271 1288 2.346766 TGAGCAACAGCTTTGAAGGA 57.653 45.000 11.34 0.00 39.10 3.36
1276 1293 5.163834 ACACAAAATTTGAGCAACAGCTTTG 60.164 36.000 13.19 0.00 39.10 2.77
1286 1303 6.421377 AAACTGGAAACACAAAATTTGAGC 57.579 33.333 13.19 0.00 35.60 4.26
1327 1345 7.461182 TTTGAATCGGATGGAGTATGTTTTT 57.539 32.000 0.00 0.00 0.00 1.94
1372 1392 1.470494 TGCTCGTGTTTGCAAACTTGA 59.530 42.857 35.09 29.57 39.59 3.02
1423 1534 0.865639 GCGGTTTTGCATGATACGGC 60.866 55.000 0.00 0.51 34.15 5.68
1522 1661 5.188948 TCCTCGTCTTCCCTATCAAATCAAA 59.811 40.000 0.00 0.00 0.00 2.69
1523 1662 4.714802 TCCTCGTCTTCCCTATCAAATCAA 59.285 41.667 0.00 0.00 0.00 2.57
1524 1663 4.286707 TCCTCGTCTTCCCTATCAAATCA 58.713 43.478 0.00 0.00 0.00 2.57
1525 1664 4.342665 ACTCCTCGTCTTCCCTATCAAATC 59.657 45.833 0.00 0.00 0.00 2.17
1526 1665 4.290942 ACTCCTCGTCTTCCCTATCAAAT 58.709 43.478 0.00 0.00 0.00 2.32
1543 1682 1.489230 AGGACAACGTGGAAAACTCCT 59.511 47.619 0.00 0.00 0.00 3.69
1544 1683 1.602377 CAGGACAACGTGGAAAACTCC 59.398 52.381 0.00 0.00 0.00 3.85
1603 1742 4.378774 TCAAATGTGCATGGTTTCAAAGG 58.621 39.130 0.00 0.00 0.00 3.11
1636 1780 7.807433 CACAACCAGATGAAAAATATCAAACGA 59.193 33.333 0.00 0.00 32.06 3.85
1779 1928 6.653526 ATCCACTGATGACAACATGAAAAA 57.346 33.333 0.00 0.00 36.82 1.94
1928 2080 0.743345 GCGGGAGGTTGTTCGCTATT 60.743 55.000 0.00 0.00 44.10 1.73
2202 2363 4.166888 GAGGCTCTGCATGGCGGA 62.167 66.667 7.40 0.00 42.08 5.54
2272 2436 1.066918 GTCGACACGTTCACCTGGT 59.933 57.895 11.55 0.00 0.00 4.00
2943 3107 6.576021 CATTCAAGCGTAAGTAAGATCGATG 58.424 40.000 0.54 0.00 41.68 3.84
2945 3109 4.503007 GCATTCAAGCGTAAGTAAGATCGA 59.497 41.667 0.00 0.00 41.68 3.59
2971 3139 2.539547 CCGATCGATTTGCATGTGGAAC 60.540 50.000 18.66 0.00 37.35 3.62
2974 3142 0.308684 CCCGATCGATTTGCATGTGG 59.691 55.000 18.66 0.48 0.00 4.17
2978 3146 0.180171 TGGTCCCGATCGATTTGCAT 59.820 50.000 18.66 0.00 0.00 3.96
3016 3184 7.656948 AGATCAATGTAGCTGAGAAGATTTAGC 59.343 37.037 0.00 0.00 36.45 3.09
3019 3187 6.700960 CGAGATCAATGTAGCTGAGAAGATTT 59.299 38.462 0.00 0.00 0.00 2.17
3020 3188 6.040278 TCGAGATCAATGTAGCTGAGAAGATT 59.960 38.462 0.00 0.00 0.00 2.40
3023 3191 5.180367 TCGAGATCAATGTAGCTGAGAAG 57.820 43.478 0.00 0.00 0.00 2.85
3030 3198 8.017946 AGTTTTCTTTTTCGAGATCAATGTAGC 58.982 33.333 0.00 0.00 0.00 3.58
3087 3255 1.612463 ACCGCTCAAAGTACTTCGAGT 59.388 47.619 21.63 11.97 0.00 4.18
3088 3256 2.349297 ACCGCTCAAAGTACTTCGAG 57.651 50.000 17.63 17.63 0.00 4.04
3089 3257 2.034939 TCAACCGCTCAAAGTACTTCGA 59.965 45.455 8.95 1.68 0.00 3.71
3090 3258 2.400399 TCAACCGCTCAAAGTACTTCG 58.600 47.619 8.95 7.98 0.00 3.79
3091 3259 3.650139 TCTCAACCGCTCAAAGTACTTC 58.350 45.455 8.95 0.00 0.00 3.01
3139 3312 2.550830 AGAAACAGCGACAGAACCAT 57.449 45.000 0.00 0.00 0.00 3.55
3167 3340 3.798337 AGCAAACAGACGCAAAGAAAATG 59.202 39.130 0.00 0.00 0.00 2.32
3177 3350 0.931662 CTGCAACAGCAAACAGACGC 60.932 55.000 0.00 0.00 37.91 5.19
3199 3376 1.382629 CACCCCCACCGGAAAAGAT 59.617 57.895 9.46 0.00 0.00 2.40
3227 3410 6.151691 GTGATTACAAGAGAAATGCTGCAAA 58.848 36.000 6.36 0.00 0.00 3.68
3258 3441 9.884465 CAATAGCTAAATGCCTAAATACACTTC 57.116 33.333 0.00 0.00 44.23 3.01
3335 3518 5.016051 ACAATGTACGATCAGCTGATCTT 57.984 39.130 39.87 35.61 46.58 2.40
3377 3560 2.765689 TGCCTCCCTTTCAGGAAAAA 57.234 45.000 0.00 0.00 37.67 1.94
3379 3562 2.765689 TTTGCCTCCCTTTCAGGAAA 57.234 45.000 0.00 0.00 37.67 3.13
3382 3565 2.521547 AGATTTGCCTCCCTTTCAGG 57.478 50.000 0.00 0.00 34.30 3.86
3383 3566 7.830099 ATTAATAGATTTGCCTCCCTTTCAG 57.170 36.000 0.00 0.00 0.00 3.02
3386 3569 9.936329 TCTTAATTAATAGATTTGCCTCCCTTT 57.064 29.630 0.00 0.00 0.00 3.11
3387 3570 9.579932 CTCTTAATTAATAGATTTGCCTCCCTT 57.420 33.333 4.94 0.00 0.00 3.95
3388 3571 8.949421 TCTCTTAATTAATAGATTTGCCTCCCT 58.051 33.333 8.75 0.00 0.00 4.20
3406 3589 9.981460 ACCCAACAAATTCTATTCTCTCTTAAT 57.019 29.630 0.00 0.00 0.00 1.40
3407 3590 9.807921 AACCCAACAAATTCTATTCTCTCTTAA 57.192 29.630 0.00 0.00 0.00 1.85
3409 3592 9.232473 GTAACCCAACAAATTCTATTCTCTCTT 57.768 33.333 0.00 0.00 0.00 2.85
3410 3593 8.383175 TGTAACCCAACAAATTCTATTCTCTCT 58.617 33.333 0.00 0.00 0.00 3.10
3411 3594 8.561738 TGTAACCCAACAAATTCTATTCTCTC 57.438 34.615 0.00 0.00 0.00 3.20
3413 3596 8.336801 ACTGTAACCCAACAAATTCTATTCTC 57.663 34.615 0.00 0.00 0.00 2.87
3414 3597 9.449719 CTACTGTAACCCAACAAATTCTATTCT 57.550 33.333 0.00 0.00 0.00 2.40
3415 3598 8.674607 CCTACTGTAACCCAACAAATTCTATTC 58.325 37.037 0.00 0.00 0.00 1.75
3416 3599 7.614192 CCCTACTGTAACCCAACAAATTCTATT 59.386 37.037 0.00 0.00 0.00 1.73
3417 3600 7.116736 CCCTACTGTAACCCAACAAATTCTAT 58.883 38.462 0.00 0.00 0.00 1.98
3418 3601 6.478129 CCCTACTGTAACCCAACAAATTCTA 58.522 40.000 0.00 0.00 0.00 2.10
3419 3602 5.321927 CCCTACTGTAACCCAACAAATTCT 58.678 41.667 0.00 0.00 0.00 2.40
3420 3603 4.082408 GCCCTACTGTAACCCAACAAATTC 60.082 45.833 0.00 0.00 0.00 2.17
3421 3604 3.830178 GCCCTACTGTAACCCAACAAATT 59.170 43.478 0.00 0.00 0.00 1.82
3422 3605 3.181427 TGCCCTACTGTAACCCAACAAAT 60.181 43.478 0.00 0.00 0.00 2.32
3423 3606 2.175069 TGCCCTACTGTAACCCAACAAA 59.825 45.455 0.00 0.00 0.00 2.83
3424 3607 1.775459 TGCCCTACTGTAACCCAACAA 59.225 47.619 0.00 0.00 0.00 2.83
3425 3608 1.436326 TGCCCTACTGTAACCCAACA 58.564 50.000 0.00 0.00 0.00 3.33
3426 3609 2.801077 ATGCCCTACTGTAACCCAAC 57.199 50.000 0.00 0.00 0.00 3.77
3427 3610 3.587951 TGTAATGCCCTACTGTAACCCAA 59.412 43.478 0.00 0.00 0.00 4.12
3428 3611 3.182976 TGTAATGCCCTACTGTAACCCA 58.817 45.455 0.00 0.00 0.00 4.51
3429 3612 3.918294 TGTAATGCCCTACTGTAACCC 57.082 47.619 0.00 0.00 0.00 4.11
3430 3613 6.259387 GTGTATTGTAATGCCCTACTGTAACC 59.741 42.308 0.00 0.00 0.00 2.85
3431 3614 6.259387 GGTGTATTGTAATGCCCTACTGTAAC 59.741 42.308 0.00 0.00 0.00 2.50
3432 3615 6.350906 GGTGTATTGTAATGCCCTACTGTAA 58.649 40.000 0.00 0.00 0.00 2.41
3433 3616 5.452216 CGGTGTATTGTAATGCCCTACTGTA 60.452 44.000 0.00 0.00 0.00 2.74
3434 3617 4.682320 CGGTGTATTGTAATGCCCTACTGT 60.682 45.833 0.00 0.00 0.00 3.55
3435 3618 3.807622 CGGTGTATTGTAATGCCCTACTG 59.192 47.826 0.00 0.00 0.00 2.74
3436 3619 3.743269 GCGGTGTATTGTAATGCCCTACT 60.743 47.826 0.00 0.00 0.00 2.57
3437 3620 2.546789 GCGGTGTATTGTAATGCCCTAC 59.453 50.000 0.00 0.00 0.00 3.18
3438 3621 2.485835 GGCGGTGTATTGTAATGCCCTA 60.486 50.000 0.00 0.00 35.01 3.53
3439 3622 1.675552 GCGGTGTATTGTAATGCCCT 58.324 50.000 0.00 0.00 0.00 5.19
3440 3623 0.666374 GGCGGTGTATTGTAATGCCC 59.334 55.000 0.00 0.00 35.01 5.36
3441 3624 1.384525 TGGCGGTGTATTGTAATGCC 58.615 50.000 0.00 0.00 41.33 4.40
3442 3625 3.708563 ATTGGCGGTGTATTGTAATGC 57.291 42.857 0.00 0.00 0.00 3.56
3443 3626 5.743026 TGTATTGGCGGTGTATTGTAATG 57.257 39.130 0.00 0.00 0.00 1.90
3444 3627 6.761099 TTTGTATTGGCGGTGTATTGTAAT 57.239 33.333 0.00 0.00 0.00 1.89
3445 3628 6.404844 CCATTTGTATTGGCGGTGTATTGTAA 60.405 38.462 0.00 0.00 0.00 2.41
3446 3629 5.066634 CCATTTGTATTGGCGGTGTATTGTA 59.933 40.000 0.00 0.00 0.00 2.41
3447 3630 4.142271 CCATTTGTATTGGCGGTGTATTGT 60.142 41.667 0.00 0.00 0.00 2.71
3448 3631 4.142271 ACCATTTGTATTGGCGGTGTATTG 60.142 41.667 0.00 0.00 37.81 1.90
3449 3632 4.020543 ACCATTTGTATTGGCGGTGTATT 58.979 39.130 0.00 0.00 37.81 1.89
3450 3633 3.626930 ACCATTTGTATTGGCGGTGTAT 58.373 40.909 0.00 0.00 37.81 2.29
3451 3634 3.011119 GACCATTTGTATTGGCGGTGTA 58.989 45.455 0.00 0.00 37.81 2.90
3452 3635 1.816224 GACCATTTGTATTGGCGGTGT 59.184 47.619 0.00 0.00 37.81 4.16
3453 3636 1.815613 TGACCATTTGTATTGGCGGTG 59.184 47.619 0.00 0.00 37.81 4.94
3454 3637 2.208132 TGACCATTTGTATTGGCGGT 57.792 45.000 0.00 0.00 37.81 5.68
3455 3638 3.799281 AATGACCATTTGTATTGGCGG 57.201 42.857 0.00 0.00 37.81 6.13
3456 3639 5.296780 AGAGTAATGACCATTTGTATTGGCG 59.703 40.000 0.17 0.00 37.81 5.69
3457 3640 6.543831 AGAGAGTAATGACCATTTGTATTGGC 59.456 38.462 0.17 0.00 37.81 4.52
3458 3641 8.400947 CAAGAGAGTAATGACCATTTGTATTGG 58.599 37.037 0.17 0.00 40.26 3.16
3459 3642 8.400947 CCAAGAGAGTAATGACCATTTGTATTG 58.599 37.037 0.17 0.00 32.50 1.90
3460 3643 7.067494 GCCAAGAGAGTAATGACCATTTGTATT 59.933 37.037 0.17 0.00 32.50 1.89
3461 3644 6.543831 GCCAAGAGAGTAATGACCATTTGTAT 59.456 38.462 0.17 0.00 32.50 2.29
3462 3645 5.880332 GCCAAGAGAGTAATGACCATTTGTA 59.120 40.000 0.17 0.00 32.50 2.41
3463 3646 4.702131 GCCAAGAGAGTAATGACCATTTGT 59.298 41.667 0.17 0.00 32.50 2.83
3464 3647 4.701651 TGCCAAGAGAGTAATGACCATTTG 59.298 41.667 0.17 0.00 32.50 2.32
3465 3648 4.922206 TGCCAAGAGAGTAATGACCATTT 58.078 39.130 0.17 0.00 32.50 2.32
3466 3649 4.574674 TGCCAAGAGAGTAATGACCATT 57.425 40.909 0.64 0.64 34.93 3.16
3467 3650 4.164796 TGATGCCAAGAGAGTAATGACCAT 59.835 41.667 0.00 0.00 0.00 3.55
3468 3651 3.519107 TGATGCCAAGAGAGTAATGACCA 59.481 43.478 0.00 0.00 0.00 4.02
3469 3652 4.142609 TGATGCCAAGAGAGTAATGACC 57.857 45.455 0.00 0.00 0.00 4.02
3470 3653 6.520272 ACTATGATGCCAAGAGAGTAATGAC 58.480 40.000 0.00 0.00 0.00 3.06
3471 3654 6.737720 ACTATGATGCCAAGAGAGTAATGA 57.262 37.500 0.00 0.00 0.00 2.57
3472 3655 6.870965 GGTACTATGATGCCAAGAGAGTAATG 59.129 42.308 0.00 0.00 0.00 1.90
3473 3656 6.014156 GGGTACTATGATGCCAAGAGAGTAAT 60.014 42.308 0.00 0.00 0.00 1.89
3474 3657 5.304614 GGGTACTATGATGCCAAGAGAGTAA 59.695 44.000 0.00 0.00 0.00 2.24
3475 3658 4.833380 GGGTACTATGATGCCAAGAGAGTA 59.167 45.833 0.00 0.00 0.00 2.59
3476 3659 3.643792 GGGTACTATGATGCCAAGAGAGT 59.356 47.826 0.00 0.00 0.00 3.24
3477 3660 3.643320 TGGGTACTATGATGCCAAGAGAG 59.357 47.826 0.00 0.00 0.00 3.20
3478 3661 3.653164 TGGGTACTATGATGCCAAGAGA 58.347 45.455 0.00 0.00 0.00 3.10
3479 3662 4.141620 ACTTGGGTACTATGATGCCAAGAG 60.142 45.833 23.41 6.91 37.29 2.85
3480 3663 3.780294 ACTTGGGTACTATGATGCCAAGA 59.220 43.478 23.41 0.00 37.29 3.02
3481 3664 3.879295 CACTTGGGTACTATGATGCCAAG 59.121 47.826 17.96 17.96 39.01 3.61
3482 3665 3.265737 ACACTTGGGTACTATGATGCCAA 59.734 43.478 0.00 0.00 0.00 4.52
3483 3666 2.843730 ACACTTGGGTACTATGATGCCA 59.156 45.455 0.00 0.00 0.00 4.92
3484 3667 3.560636 ACACTTGGGTACTATGATGCC 57.439 47.619 0.00 0.00 0.00 4.40
3485 3668 5.235305 CAAACACTTGGGTACTATGATGC 57.765 43.478 0.00 0.00 0.00 3.91
3502 3685 3.524014 CACAGCAGGTGCCAAACA 58.476 55.556 0.00 0.00 41.36 2.83
3510 3693 1.152756 GGTTTGGGTCACAGCAGGT 60.153 57.895 0.00 0.00 0.00 4.00
3511 3694 2.260869 CGGTTTGGGTCACAGCAGG 61.261 63.158 0.00 0.00 0.00 4.85
3512 3695 2.908073 GCGGTTTGGGTCACAGCAG 61.908 63.158 0.00 0.00 35.63 4.24
3513 3696 2.904866 GCGGTTTGGGTCACAGCA 60.905 61.111 0.00 0.00 35.63 4.41
3514 3697 3.670377 GGCGGTTTGGGTCACAGC 61.670 66.667 0.00 0.00 34.90 4.40
3515 3698 3.353836 CGGCGGTTTGGGTCACAG 61.354 66.667 0.00 0.00 0.00 3.66
3522 3705 4.038080 GTTGAGGCGGCGGTTTGG 62.038 66.667 9.78 0.00 0.00 3.28
3523 3706 4.038080 GGTTGAGGCGGCGGTTTG 62.038 66.667 9.78 0.00 0.00 2.93
3524 3707 3.785122 AAGGTTGAGGCGGCGGTTT 62.785 57.895 9.78 0.00 0.00 3.27
3525 3708 4.265056 AAGGTTGAGGCGGCGGTT 62.265 61.111 9.78 0.00 0.00 4.44
3527 3710 2.587322 TATCAAGGTTGAGGCGGCGG 62.587 60.000 9.78 0.00 41.08 6.13
3528 3711 0.532862 ATATCAAGGTTGAGGCGGCG 60.533 55.000 0.51 0.51 41.08 6.46
3529 3712 1.334869 CAATATCAAGGTTGAGGCGGC 59.665 52.381 0.00 0.00 41.08 6.53
3530 3713 1.334869 GCAATATCAAGGTTGAGGCGG 59.665 52.381 0.00 0.00 41.08 6.13
3531 3714 2.292267 AGCAATATCAAGGTTGAGGCG 58.708 47.619 0.00 0.00 41.08 5.52
3532 3715 4.261363 GCTTAGCAATATCAAGGTTGAGGC 60.261 45.833 0.00 0.52 41.08 4.70
3533 3716 4.883585 TGCTTAGCAATATCAAGGTTGAGG 59.116 41.667 3.67 0.00 36.67 3.86
3534 3717 5.008415 CCTGCTTAGCAATATCAAGGTTGAG 59.992 44.000 8.68 0.00 38.25 3.02
3535 3718 4.883585 CCTGCTTAGCAATATCAAGGTTGA 59.116 41.667 8.68 0.00 38.41 3.18
3536 3719 4.883585 TCCTGCTTAGCAATATCAAGGTTG 59.116 41.667 8.68 0.00 38.41 3.77
3537 3720 4.884164 GTCCTGCTTAGCAATATCAAGGTT 59.116 41.667 8.68 0.00 38.41 3.50
3538 3721 4.455606 GTCCTGCTTAGCAATATCAAGGT 58.544 43.478 8.68 0.00 38.41 3.50
3539 3722 3.817647 GGTCCTGCTTAGCAATATCAAGG 59.182 47.826 8.68 4.15 38.41 3.61
3540 3723 4.454678 TGGTCCTGCTTAGCAATATCAAG 58.545 43.478 8.68 0.00 38.41 3.02
3541 3724 4.502105 TGGTCCTGCTTAGCAATATCAA 57.498 40.909 8.68 0.00 38.41 2.57
3542 3725 4.645535 GATGGTCCTGCTTAGCAATATCA 58.354 43.478 8.68 6.12 38.41 2.15
3543 3726 3.681897 CGATGGTCCTGCTTAGCAATATC 59.318 47.826 8.68 6.98 38.41 1.63
3544 3727 3.557898 CCGATGGTCCTGCTTAGCAATAT 60.558 47.826 8.68 0.00 38.41 1.28
3545 3728 2.224281 CCGATGGTCCTGCTTAGCAATA 60.224 50.000 8.68 0.00 38.41 1.90
3546 3729 1.475751 CCGATGGTCCTGCTTAGCAAT 60.476 52.381 8.68 0.00 38.41 3.56
3547 3730 0.107703 CCGATGGTCCTGCTTAGCAA 60.108 55.000 8.68 0.00 38.41 3.91
3548 3731 0.975556 TCCGATGGTCCTGCTTAGCA 60.976 55.000 6.76 6.76 36.92 3.49
3549 3732 0.249657 CTCCGATGGTCCTGCTTAGC 60.250 60.000 0.00 0.00 0.00 3.09
3550 3733 0.390860 CCTCCGATGGTCCTGCTTAG 59.609 60.000 0.00 0.00 0.00 2.18
3551 3734 1.048724 CCCTCCGATGGTCCTGCTTA 61.049 60.000 0.00 0.00 0.00 3.09
3552 3735 2.370445 CCCTCCGATGGTCCTGCTT 61.370 63.158 0.00 0.00 0.00 3.91
3553 3736 2.611964 ATCCCTCCGATGGTCCTGCT 62.612 60.000 0.00 0.00 0.00 4.24
3554 3737 2.143419 ATCCCTCCGATGGTCCTGC 61.143 63.158 0.00 0.00 0.00 4.85
3555 3738 1.750930 CATCCCTCCGATGGTCCTG 59.249 63.158 0.00 0.00 44.14 3.86
3556 3739 4.302622 CATCCCTCCGATGGTCCT 57.697 61.111 0.00 0.00 44.14 3.85
3562 3745 1.839994 TCAAAAGAGCATCCCTCCGAT 59.160 47.619 0.00 0.00 41.74 4.18
3563 3746 1.066143 GTCAAAAGAGCATCCCTCCGA 60.066 52.381 0.00 0.00 41.74 4.55
3564 3747 1.373570 GTCAAAAGAGCATCCCTCCG 58.626 55.000 0.00 0.00 41.74 4.63
3565 3748 1.373570 CGTCAAAAGAGCATCCCTCC 58.626 55.000 0.00 0.00 41.74 4.30
3566 3749 1.373570 CCGTCAAAAGAGCATCCCTC 58.626 55.000 0.00 0.00 41.07 4.30
3567 3750 0.035056 CCCGTCAAAAGAGCATCCCT 60.035 55.000 0.00 0.00 33.66 4.20
3568 3751 0.035439 TCCCGTCAAAAGAGCATCCC 60.035 55.000 0.00 0.00 33.66 3.85
3569 3752 1.066143 TCTCCCGTCAAAAGAGCATCC 60.066 52.381 0.00 0.00 33.66 3.51
3570 3753 2.003301 GTCTCCCGTCAAAAGAGCATC 58.997 52.381 0.00 0.00 0.00 3.91
3571 3754 1.673033 CGTCTCCCGTCAAAAGAGCAT 60.673 52.381 0.00 0.00 0.00 3.79
3572 3755 0.319555 CGTCTCCCGTCAAAAGAGCA 60.320 55.000 0.00 0.00 0.00 4.26
3573 3756 2.446341 CGTCTCCCGTCAAAAGAGC 58.554 57.895 0.00 0.00 0.00 4.09
3583 3766 1.128692 GAAAGAAATGCACGTCTCCCG 59.871 52.381 1.61 0.00 44.03 5.14
3584 3767 2.151202 TGAAAGAAATGCACGTCTCCC 58.849 47.619 1.61 0.00 0.00 4.30
3585 3768 4.425577 AATGAAAGAAATGCACGTCTCC 57.574 40.909 1.61 0.00 0.00 3.71
3586 3769 5.451908 TGAAATGAAAGAAATGCACGTCTC 58.548 37.500 1.61 0.00 0.00 3.36
3587 3770 5.437289 TGAAATGAAAGAAATGCACGTCT 57.563 34.783 0.00 0.00 0.00 4.18
3588 3771 6.509317 TTTGAAATGAAAGAAATGCACGTC 57.491 33.333 0.00 0.00 0.00 4.34
3589 3772 6.073657 CCATTTGAAATGAAAGAAATGCACGT 60.074 34.615 18.82 0.00 35.41 4.49
3590 3773 6.073657 ACCATTTGAAATGAAAGAAATGCACG 60.074 34.615 18.82 0.66 35.41 5.34
3591 3774 7.193377 ACCATTTGAAATGAAAGAAATGCAC 57.807 32.000 18.82 0.00 35.41 4.57
3592 3775 6.427547 GGACCATTTGAAATGAAAGAAATGCA 59.572 34.615 18.82 0.00 35.41 3.96
3593 3776 6.427547 TGGACCATTTGAAATGAAAGAAATGC 59.572 34.615 18.82 2.36 35.41 3.56
3594 3777 7.966246 TGGACCATTTGAAATGAAAGAAATG 57.034 32.000 18.82 2.67 36.14 2.32
3595 3778 8.431222 TCTTGGACCATTTGAAATGAAAGAAAT 58.569 29.630 18.82 0.00 0.00 2.17
3596 3779 7.790027 TCTTGGACCATTTGAAATGAAAGAAA 58.210 30.769 18.82 6.25 0.00 2.52
3597 3780 7.287466 TCTCTTGGACCATTTGAAATGAAAGAA 59.713 33.333 18.82 5.99 0.00 2.52
3598 3781 6.777091 TCTCTTGGACCATTTGAAATGAAAGA 59.223 34.615 18.82 17.45 0.00 2.52
3599 3782 6.985117 TCTCTTGGACCATTTGAAATGAAAG 58.015 36.000 18.82 14.82 0.00 2.62
3600 3783 6.975196 TCTCTTGGACCATTTGAAATGAAA 57.025 33.333 18.82 7.16 0.00 2.69
3601 3784 8.648698 TTATCTCTTGGACCATTTGAAATGAA 57.351 30.769 18.82 4.76 0.00 2.57
3602 3785 7.148018 GCTTATCTCTTGGACCATTTGAAATGA 60.148 37.037 18.82 0.00 0.00 2.57
3603 3786 6.976925 GCTTATCTCTTGGACCATTTGAAATG 59.023 38.462 10.84 10.84 0.00 2.32
3604 3787 6.664816 TGCTTATCTCTTGGACCATTTGAAAT 59.335 34.615 0.00 0.00 0.00 2.17
3605 3788 6.009589 TGCTTATCTCTTGGACCATTTGAAA 58.990 36.000 0.00 0.00 0.00 2.69
3606 3789 5.569355 TGCTTATCTCTTGGACCATTTGAA 58.431 37.500 0.00 0.00 0.00 2.69
3607 3790 5.178096 TGCTTATCTCTTGGACCATTTGA 57.822 39.130 0.00 0.00 0.00 2.69
3608 3791 5.221185 CCATGCTTATCTCTTGGACCATTTG 60.221 44.000 0.00 0.00 32.32 2.32
3609 3792 4.891756 CCATGCTTATCTCTTGGACCATTT 59.108 41.667 0.00 0.00 32.32 2.32
3610 3793 4.079558 ACCATGCTTATCTCTTGGACCATT 60.080 41.667 0.00 0.00 34.13 3.16
3611 3794 3.461085 ACCATGCTTATCTCTTGGACCAT 59.539 43.478 0.00 0.00 34.13 3.55
3612 3795 2.846206 ACCATGCTTATCTCTTGGACCA 59.154 45.455 0.00 0.00 34.13 4.02
3613 3796 3.567478 ACCATGCTTATCTCTTGGACC 57.433 47.619 0.00 0.00 34.13 4.46
3614 3797 5.006746 CGTTAACCATGCTTATCTCTTGGAC 59.993 44.000 0.00 0.00 34.13 4.02
3615 3798 5.105106 TCGTTAACCATGCTTATCTCTTGGA 60.105 40.000 0.00 0.00 34.13 3.53
3616 3799 5.116180 TCGTTAACCATGCTTATCTCTTGG 58.884 41.667 0.00 0.00 35.56 3.61
3617 3800 6.662414 TTCGTTAACCATGCTTATCTCTTG 57.338 37.500 0.00 0.00 0.00 3.02
3618 3801 5.294552 GCTTCGTTAACCATGCTTATCTCTT 59.705 40.000 0.00 0.00 0.00 2.85
3619 3802 4.811557 GCTTCGTTAACCATGCTTATCTCT 59.188 41.667 0.00 0.00 0.00 3.10
3620 3803 4.024809 GGCTTCGTTAACCATGCTTATCTC 60.025 45.833 10.16 0.00 0.00 2.75
3621 3804 3.877508 GGCTTCGTTAACCATGCTTATCT 59.122 43.478 10.16 0.00 0.00 1.98
3622 3805 3.625764 TGGCTTCGTTAACCATGCTTATC 59.374 43.478 10.16 0.00 0.00 1.75
3623 3806 3.616219 TGGCTTCGTTAACCATGCTTAT 58.384 40.909 10.16 0.00 0.00 1.73
3624 3807 3.060736 TGGCTTCGTTAACCATGCTTA 57.939 42.857 10.16 0.00 0.00 3.09
3625 3808 1.904287 TGGCTTCGTTAACCATGCTT 58.096 45.000 10.16 0.00 0.00 3.91
3626 3809 2.017049 GATGGCTTCGTTAACCATGCT 58.983 47.619 10.16 0.00 44.20 3.79
3627 3810 1.268032 CGATGGCTTCGTTAACCATGC 60.268 52.381 13.99 1.14 44.20 4.06
3628 3811 1.330521 CCGATGGCTTCGTTAACCATG 59.669 52.381 19.54 0.40 46.65 3.66
3629 3812 1.663695 CCGATGGCTTCGTTAACCAT 58.336 50.000 19.54 0.00 46.65 3.55
3630 3813 1.022451 GCCGATGGCTTCGTTAACCA 61.022 55.000 19.54 0.00 46.69 3.67
3631 3814 1.719709 GCCGATGGCTTCGTTAACC 59.280 57.895 19.54 1.65 46.69 2.85
3642 3825 2.969628 AGAACTAGAACAGCCGATGG 57.030 50.000 0.00 0.00 0.00 3.51
3643 3826 5.613358 AAAAAGAACTAGAACAGCCGATG 57.387 39.130 0.00 0.00 0.00 3.84
3758 4142 7.166851 AGGATGTTCATATCTGCTTTCATAGG 58.833 38.462 0.00 0.00 0.00 2.57
3770 4154 7.070447 TGCTCATAGGGATAGGATGTTCATATC 59.930 40.741 1.56 1.56 38.88 1.63
3772 4156 6.155221 GTGCTCATAGGGATAGGATGTTCATA 59.845 42.308 0.00 0.00 0.00 2.15
3780 4164 3.116746 TGAAGGTGCTCATAGGGATAGGA 60.117 47.826 0.00 0.00 0.00 2.94
3781 4165 3.242867 TGAAGGTGCTCATAGGGATAGG 58.757 50.000 0.00 0.00 0.00 2.57
3826 4210 5.009710 TGTCTCTGTCAACTTCGTCACTAAT 59.990 40.000 0.00 0.00 0.00 1.73
3830 4214 3.079960 TGTCTCTGTCAACTTCGTCAC 57.920 47.619 0.00 0.00 0.00 3.67
3840 4224 2.416893 CGACTTCGAGATGTCTCTGTCA 59.583 50.000 18.36 0.00 43.02 3.58
3864 4248 4.847198 TCATTCACTTGTATGACATGCCT 58.153 39.130 0.00 0.00 28.86 4.75
3865 4249 5.565592 TTCATTCACTTGTATGACATGCC 57.434 39.130 0.00 0.00 32.72 4.40
3866 4250 6.854892 GCTATTCATTCACTTGTATGACATGC 59.145 38.462 0.00 0.00 32.72 4.06
3891 4275 5.957220 TCGCATATTTTCAAGATTTTCGACG 59.043 36.000 0.00 0.00 0.00 5.12
3893 4277 6.128145 TGGTCGCATATTTTCAAGATTTTCGA 60.128 34.615 0.00 0.00 0.00 3.71
3900 4284 3.124466 CGTGTGGTCGCATATTTTCAAGA 59.876 43.478 0.00 0.00 0.00 3.02
3921 4305 1.599797 AAGTCCGAAACTTGGCCCG 60.600 57.895 0.00 0.00 46.61 6.13
3931 4315 3.762407 TCACAAGGATTCAAGTCCGAA 57.238 42.857 0.00 0.00 43.27 4.30
3934 4318 4.389374 TCAGTTCACAAGGATTCAAGTCC 58.611 43.478 0.00 0.00 38.62 3.85
3977 4361 9.919416 TTGGATGAAAATCCTTTATGTAGATGA 57.081 29.630 6.33 0.00 41.29 2.92
3981 4365 8.840321 ACGATTGGATGAAAATCCTTTATGTAG 58.160 33.333 6.33 0.00 41.29 2.74
4000 4384 2.670905 TGTATCACTTTGCGACGATTGG 59.329 45.455 0.00 0.00 0.00 3.16
4009 4393 2.665519 CGGTGCAGTTGTATCACTTTGC 60.666 50.000 0.00 0.00 0.00 3.68
4024 4411 0.179078 ACGGTTTTACACTCGGTGCA 60.179 50.000 4.23 0.00 36.98 4.57
4029 4416 2.325761 CTGAGGACGGTTTTACACTCG 58.674 52.381 0.00 0.00 0.00 4.18
4062 4449 8.495554 TTGTTTGCGTAAAGTATGTTTATGTG 57.504 30.769 0.00 0.00 0.00 3.21
4063 4450 9.517609 TTTTGTTTGCGTAAAGTATGTTTATGT 57.482 25.926 0.00 0.00 0.00 2.29
4077 4464 7.067129 TGCCCAGTATATATTTTTGTTTGCGTA 59.933 33.333 0.00 0.00 0.00 4.42
4078 4465 6.127591 TGCCCAGTATATATTTTTGTTTGCGT 60.128 34.615 0.00 0.00 0.00 5.24
4079 4466 6.198216 GTGCCCAGTATATATTTTTGTTTGCG 59.802 38.462 0.00 0.00 0.00 4.85
4080 4467 7.222611 CAGTGCCCAGTATATATTTTTGTTTGC 59.777 37.037 0.00 0.00 0.00 3.68
4081 4468 8.250332 ACAGTGCCCAGTATATATTTTTGTTTG 58.750 33.333 0.00 0.00 0.00 2.93
4082 4469 8.361169 ACAGTGCCCAGTATATATTTTTGTTT 57.639 30.769 0.00 0.00 0.00 2.83
4084 4471 7.068226 GGAACAGTGCCCAGTATATATTTTTGT 59.932 37.037 0.00 0.00 0.00 2.83
4085 4472 7.068103 TGGAACAGTGCCCAGTATATATTTTTG 59.932 37.037 0.00 0.00 0.00 2.44
4116 4503 4.849926 CGTAGTATTCACGATGGGTATTCG 59.150 45.833 0.00 0.00 41.91 3.34
4121 4508 3.567164 CCTACGTAGTATTCACGATGGGT 59.433 47.826 20.73 0.00 44.56 4.51
4127 4514 6.952743 AGTATTCACCTACGTAGTATTCACG 58.047 40.000 20.73 6.53 44.56 4.35
4130 4517 8.442384 GCTCTAGTATTCACCTACGTAGTATTC 58.558 40.741 20.73 7.14 44.56 1.75
4142 4529 3.619038 GTGCACAAGCTCTAGTATTCACC 59.381 47.826 13.17 0.00 42.74 4.02
4143 4530 4.245660 TGTGCACAAGCTCTAGTATTCAC 58.754 43.478 19.28 0.00 42.74 3.18
4144 4531 4.535526 TGTGCACAAGCTCTAGTATTCA 57.464 40.909 19.28 0.00 42.74 2.57
4145 4532 5.111989 TGATGTGCACAAGCTCTAGTATTC 58.888 41.667 25.72 12.42 42.74 1.75
4146 4533 5.089970 TGATGTGCACAAGCTCTAGTATT 57.910 39.130 25.72 1.57 42.74 1.89
4147 4534 4.743057 TGATGTGCACAAGCTCTAGTAT 57.257 40.909 25.72 2.19 42.74 2.12
4148 4535 4.160252 TCATGATGTGCACAAGCTCTAGTA 59.840 41.667 25.72 1.31 42.74 1.82
4149 4536 3.055602 TCATGATGTGCACAAGCTCTAGT 60.056 43.478 25.72 3.95 42.74 2.57
4150 4537 3.528532 TCATGATGTGCACAAGCTCTAG 58.471 45.455 25.72 13.07 42.74 2.43
4151 4538 3.528532 CTCATGATGTGCACAAGCTCTA 58.471 45.455 25.72 8.36 42.74 2.43
4152 4539 2.357075 CTCATGATGTGCACAAGCTCT 58.643 47.619 25.72 6.61 42.74 4.09
4153 4540 1.400846 CCTCATGATGTGCACAAGCTC 59.599 52.381 25.72 17.53 42.74 4.09
4154 4541 1.003928 TCCTCATGATGTGCACAAGCT 59.996 47.619 25.72 7.52 42.74 3.74
4155 4542 1.400846 CTCCTCATGATGTGCACAAGC 59.599 52.381 25.72 18.99 42.57 4.01
4156 4543 2.937149 CTCTCCTCATGATGTGCACAAG 59.063 50.000 25.72 15.90 0.00 3.16
4157 4544 2.938314 GCTCTCCTCATGATGTGCACAA 60.938 50.000 25.72 8.96 0.00 3.33
4158 4545 1.406477 GCTCTCCTCATGATGTGCACA 60.406 52.381 24.08 24.08 0.00 4.57
4159 4546 1.134461 AGCTCTCCTCATGATGTGCAC 60.134 52.381 10.75 10.75 0.00 4.57
4160 4547 1.134491 CAGCTCTCCTCATGATGTGCA 60.134 52.381 15.06 0.00 0.00 4.57
4161 4548 1.584175 CAGCTCTCCTCATGATGTGC 58.416 55.000 0.00 2.91 0.00 4.57
4162 4549 1.485480 ACCAGCTCTCCTCATGATGTG 59.515 52.381 0.00 0.00 0.00 3.21
4163 4550 1.485480 CACCAGCTCTCCTCATGATGT 59.515 52.381 0.00 0.00 0.00 3.06
4164 4551 1.202663 CCACCAGCTCTCCTCATGATG 60.203 57.143 0.00 0.00 0.00 3.07
4165 4552 1.129917 CCACCAGCTCTCCTCATGAT 58.870 55.000 0.00 0.00 0.00 2.45
4166 4553 0.252421 ACCACCAGCTCTCCTCATGA 60.252 55.000 0.00 0.00 0.00 3.07
4167 4554 0.177604 GACCACCAGCTCTCCTCATG 59.822 60.000 0.00 0.00 0.00 3.07
4168 4555 0.980231 GGACCACCAGCTCTCCTCAT 60.980 60.000 0.00 0.00 35.97 2.90
4169 4556 1.610673 GGACCACCAGCTCTCCTCA 60.611 63.158 0.00 0.00 35.97 3.86
4170 4557 1.610673 TGGACCACCAGCTCTCCTC 60.611 63.158 0.00 0.00 41.77 3.71
4171 4558 2.533435 TGGACCACCAGCTCTCCT 59.467 61.111 0.00 0.00 41.77 3.69
4179 4566 1.550524 CTCTCGAAATCTGGACCACCA 59.449 52.381 0.00 0.00 44.76 4.17
4180 4567 1.550976 ACTCTCGAAATCTGGACCACC 59.449 52.381 0.00 0.00 0.00 4.61
4181 4568 4.657436 ATACTCTCGAAATCTGGACCAC 57.343 45.455 0.00 0.00 0.00 4.16
4182 4569 5.677319 AAATACTCTCGAAATCTGGACCA 57.323 39.130 0.00 0.00 0.00 4.02
4183 4570 6.036191 GTCAAAATACTCTCGAAATCTGGACC 59.964 42.308 0.00 0.00 0.00 4.46
4184 4571 6.590292 TGTCAAAATACTCTCGAAATCTGGAC 59.410 38.462 0.00 0.00 0.00 4.02
4185 4572 6.697395 TGTCAAAATACTCTCGAAATCTGGA 58.303 36.000 0.00 0.00 0.00 3.86
4186 4573 6.968131 TGTCAAAATACTCTCGAAATCTGG 57.032 37.500 0.00 0.00 0.00 3.86
4187 4574 8.189709 TCATGTCAAAATACTCTCGAAATCTG 57.810 34.615 0.00 0.00 0.00 2.90
4188 4575 8.253810 TCTCATGTCAAAATACTCTCGAAATCT 58.746 33.333 0.00 0.00 0.00 2.40
4189 4576 8.412608 TCTCATGTCAAAATACTCTCGAAATC 57.587 34.615 0.00 0.00 0.00 2.17
4190 4577 7.010923 GCTCTCATGTCAAAATACTCTCGAAAT 59.989 37.037 0.00 0.00 0.00 2.17
4191 4578 6.311445 GCTCTCATGTCAAAATACTCTCGAAA 59.689 38.462 0.00 0.00 0.00 3.46
4192 4579 5.807520 GCTCTCATGTCAAAATACTCTCGAA 59.192 40.000 0.00 0.00 0.00 3.71
4193 4580 5.344066 GCTCTCATGTCAAAATACTCTCGA 58.656 41.667 0.00 0.00 0.00 4.04
4194 4581 4.505922 GGCTCTCATGTCAAAATACTCTCG 59.494 45.833 0.00 0.00 0.00 4.04
4195 4582 5.423015 TGGCTCTCATGTCAAAATACTCTC 58.577 41.667 0.00 0.00 0.00 3.20
4196 4583 5.426689 TGGCTCTCATGTCAAAATACTCT 57.573 39.130 0.00 0.00 0.00 3.24
4197 4584 6.500684 TTTGGCTCTCATGTCAAAATACTC 57.499 37.500 0.00 0.00 0.00 2.59
4198 4585 6.265196 TGTTTTGGCTCTCATGTCAAAATACT 59.735 34.615 9.63 0.00 39.97 2.12
4199 4586 6.446318 TGTTTTGGCTCTCATGTCAAAATAC 58.554 36.000 9.63 1.22 39.97 1.89
4200 4587 6.489700 TCTGTTTTGGCTCTCATGTCAAAATA 59.510 34.615 9.63 6.87 39.97 1.40
4201 4588 5.302568 TCTGTTTTGGCTCTCATGTCAAAAT 59.697 36.000 9.63 0.00 39.97 1.82
4202 4589 4.644234 TCTGTTTTGGCTCTCATGTCAAAA 59.356 37.500 3.36 3.36 36.94 2.44
4203 4590 4.206375 TCTGTTTTGGCTCTCATGTCAAA 58.794 39.130 0.00 0.00 0.00 2.69
4204 4591 3.819368 TCTGTTTTGGCTCTCATGTCAA 58.181 40.909 0.00 0.00 0.00 3.18
4205 4592 3.490439 TCTGTTTTGGCTCTCATGTCA 57.510 42.857 0.00 0.00 0.00 3.58
4206 4593 4.456911 TCAATCTGTTTTGGCTCTCATGTC 59.543 41.667 0.00 0.00 0.00 3.06
4207 4594 4.401022 TCAATCTGTTTTGGCTCTCATGT 58.599 39.130 0.00 0.00 0.00 3.21
4208 4595 4.674623 GCTCAATCTGTTTTGGCTCTCATG 60.675 45.833 0.00 0.00 0.00 3.07
4209 4596 3.442977 GCTCAATCTGTTTTGGCTCTCAT 59.557 43.478 0.00 0.00 0.00 2.90
4210 4597 2.816087 GCTCAATCTGTTTTGGCTCTCA 59.184 45.455 0.00 0.00 0.00 3.27
4211 4598 2.163211 GGCTCAATCTGTTTTGGCTCTC 59.837 50.000 0.00 0.00 0.00 3.20
4212 4599 2.165998 GGCTCAATCTGTTTTGGCTCT 58.834 47.619 0.00 0.00 0.00 4.09
4213 4600 1.888512 TGGCTCAATCTGTTTTGGCTC 59.111 47.619 0.00 0.00 0.00 4.70
4214 4601 1.891150 CTGGCTCAATCTGTTTTGGCT 59.109 47.619 0.00 0.00 0.00 4.75
4215 4602 1.067354 CCTGGCTCAATCTGTTTTGGC 60.067 52.381 0.00 0.00 0.00 4.52
4216 4603 2.242043 ACCTGGCTCAATCTGTTTTGG 58.758 47.619 0.00 0.00 0.00 3.28
4217 4604 4.520492 AGTAACCTGGCTCAATCTGTTTTG 59.480 41.667 0.00 0.00 0.00 2.44
4218 4605 4.729868 AGTAACCTGGCTCAATCTGTTTT 58.270 39.130 0.00 0.00 0.00 2.43
4219 4606 4.373156 AGTAACCTGGCTCAATCTGTTT 57.627 40.909 0.00 0.00 0.00 2.83
4220 4607 5.700402 ATAGTAACCTGGCTCAATCTGTT 57.300 39.130 0.00 0.00 0.00 3.16
4221 4608 5.661312 TGTATAGTAACCTGGCTCAATCTGT 59.339 40.000 0.00 0.00 0.00 3.41
4222 4609 6.161855 TGTATAGTAACCTGGCTCAATCTG 57.838 41.667 0.00 0.00 0.00 2.90
4223 4610 6.808321 TTGTATAGTAACCTGGCTCAATCT 57.192 37.500 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.