Multiple sequence alignment - TraesCS1D01G274800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G274800 chr1D 100.000 4087 0 0 1 4087 370348413 370344327 0.000000e+00 7548.0
1 TraesCS1D01G274800 chr1D 92.308 52 3 1 216 267 293590682 293590632 5.670000e-09 73.1
2 TraesCS1D01G274800 chr1A 90.896 2834 174 36 399 3182 469372234 469369435 0.000000e+00 3727.0
3 TraesCS1D01G274800 chr1B 94.203 1587 83 7 1925 3507 493868483 493866902 0.000000e+00 2412.0
4 TraesCS1D01G274800 chr1B 92.887 717 37 8 863 1571 493869664 493868954 0.000000e+00 1029.0
5 TraesCS1D01G274800 chr1B 88.998 509 27 15 370 850 493870245 493869738 1.630000e-168 603.0
6 TraesCS1D01G274800 chr1B 95.283 106 4 1 107 212 493870414 493870310 2.530000e-37 167.0
7 TraesCS1D01G274800 chr1B 80.569 211 30 10 3815 4020 623349641 623349845 7.080000e-33 152.0
8 TraesCS1D01G274800 chr1B 95.522 67 3 0 276 342 493870301 493870235 1.550000e-19 108.0
9 TraesCS1D01G274800 chr1B 98.305 59 1 0 3504 3562 493866850 493866792 2.010000e-18 104.0
10 TraesCS1D01G274800 chr1B 83.810 105 16 1 3 106 8850255 8850151 9.350000e-17 99.0
11 TraesCS1D01G274800 chr5D 88.364 275 25 5 3765 4038 80307570 80307838 1.420000e-84 324.0
12 TraesCS1D01G274800 chr5D 91.241 137 9 2 1791 1925 215302120 215301985 2.510000e-42 183.0
13 TraesCS1D01G274800 chr5D 83.333 198 26 6 3827 4020 509438224 509438418 4.200000e-40 176.0
14 TraesCS1D01G274800 chr4A 85.388 219 25 7 3831 4047 661829424 661829211 1.910000e-53 220.0
15 TraesCS1D01G274800 chr4A 95.455 44 2 0 222 265 581944341 581944298 2.040000e-08 71.3
16 TraesCS1D01G274800 chr6D 100.000 103 0 0 1 103 126845186 126845084 1.500000e-44 191.0
17 TraesCS1D01G274800 chr5B 87.421 159 17 3 1773 1930 138770127 138770283 3.250000e-41 180.0
18 TraesCS1D01G274800 chr5B 86.486 148 20 0 1779 1926 98663325 98663178 3.270000e-36 163.0
19 TraesCS1D01G274800 chr2D 88.356 146 16 1 1773 1918 118046358 118046502 1.510000e-39 174.0
20 TraesCS1D01G274800 chr7D 88.571 140 16 0 1785 1924 156796980 156796841 1.950000e-38 171.0
21 TraesCS1D01G274800 chr7D 87.755 147 17 1 1773 1918 379326318 379326464 1.950000e-38 171.0
22 TraesCS1D01G274800 chr3A 87.075 147 19 0 1784 1930 514492585 514492439 2.530000e-37 167.0
23 TraesCS1D01G274800 chr2A 87.162 148 17 2 1779 1926 329688167 329688022 2.530000e-37 167.0
24 TraesCS1D01G274800 chr2A 97.727 44 1 0 222 265 745788451 745788408 4.380000e-10 76.8
25 TraesCS1D01G274800 chr2A 95.652 46 2 0 220 265 776932006 776931961 1.580000e-09 75.0
26 TraesCS1D01G274800 chr2A 100.000 38 0 0 222 259 3624444 3624407 2.040000e-08 71.3
27 TraesCS1D01G274800 chr7A 90.000 60 4 2 204 261 138361754 138361695 4.380000e-10 76.8
28 TraesCS1D01G274800 chr4D 97.727 44 1 0 222 265 34660030 34659987 4.380000e-10 76.8
29 TraesCS1D01G274800 chr6A 95.556 45 2 0 217 261 406358741 406358785 5.670000e-09 73.1
30 TraesCS1D01G274800 chr5A 93.182 44 3 0 222 265 350237377 350237334 9.480000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G274800 chr1D 370344327 370348413 4086 True 7548.000000 7548 100.000000 1 4087 1 chr1D.!!$R2 4086
1 TraesCS1D01G274800 chr1A 469369435 469372234 2799 True 3727.000000 3727 90.896000 399 3182 1 chr1A.!!$R1 2783
2 TraesCS1D01G274800 chr1B 493866792 493870414 3622 True 737.166667 2412 94.199667 107 3562 6 chr1B.!!$R2 3455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 369 0.039798 GTGACTGCAATGTGCCACAG 60.040 55.0 3.0 0.0 44.23 3.66 F
2047 2456 0.376152 CTCTGTTGCCATGATGTCGC 59.624 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 2647 0.107017 GCATGGTGTGGTGCTCCTAT 60.107 55.0 6.34 0.0 38.3 2.57 R
3578 4046 0.032615 GAGAGAGAGAGAGGGGCCAA 60.033 60.0 4.39 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.889196 CGAAGAATCGGTGGTTTTTGA 57.111 42.857 0.00 0.00 45.32 2.69
39 40 3.551551 CGAAGAATCGGTGGTTTTTGAC 58.448 45.455 0.00 0.00 45.32 3.18
40 41 3.608474 CGAAGAATCGGTGGTTTTTGACC 60.608 47.826 0.00 0.00 45.95 4.02
41 42 6.611825 CGAAGAATCGGTGGTTTTTGACCC 62.612 50.000 0.00 0.00 45.55 4.46
53 54 6.276611 GGTTTTTGACCCAAATTCGTAAAC 57.723 37.500 0.00 0.00 43.06 2.01
54 55 5.234757 GGTTTTTGACCCAAATTCGTAAACC 59.765 40.000 0.00 0.00 43.06 3.27
55 56 5.593679 TTTTGACCCAAATTCGTAAACCA 57.406 34.783 0.00 0.00 33.19 3.67
56 57 4.839668 TTGACCCAAATTCGTAAACCAG 57.160 40.909 0.00 0.00 0.00 4.00
57 58 3.822940 TGACCCAAATTCGTAAACCAGT 58.177 40.909 0.00 0.00 0.00 4.00
58 59 3.566322 TGACCCAAATTCGTAAACCAGTG 59.434 43.478 0.00 0.00 0.00 3.66
59 60 3.558033 ACCCAAATTCGTAAACCAGTGT 58.442 40.909 0.00 0.00 0.00 3.55
60 61 3.955551 ACCCAAATTCGTAAACCAGTGTT 59.044 39.130 0.00 0.00 35.82 3.32
61 62 4.403113 ACCCAAATTCGTAAACCAGTGTTT 59.597 37.500 0.00 0.00 46.22 2.83
62 63 5.105269 ACCCAAATTCGTAAACCAGTGTTTT 60.105 36.000 0.00 0.00 41.92 2.43
63 64 5.460748 CCCAAATTCGTAAACCAGTGTTTTC 59.539 40.000 0.00 0.00 41.92 2.29
64 65 6.270064 CCAAATTCGTAAACCAGTGTTTTCT 58.730 36.000 0.00 0.00 41.92 2.52
65 66 6.198216 CCAAATTCGTAAACCAGTGTTTTCTG 59.802 38.462 0.00 0.00 41.92 3.02
66 67 3.955771 TCGTAAACCAGTGTTTTCTGC 57.044 42.857 0.00 0.00 41.92 4.26
67 68 2.614983 TCGTAAACCAGTGTTTTCTGCC 59.385 45.455 0.00 0.00 41.92 4.85
68 69 2.356382 CGTAAACCAGTGTTTTCTGCCA 59.644 45.455 0.00 0.00 41.92 4.92
69 70 3.181495 CGTAAACCAGTGTTTTCTGCCAA 60.181 43.478 0.00 0.00 41.92 4.52
70 71 3.971245 AAACCAGTGTTTTCTGCCAAA 57.029 38.095 0.00 0.00 41.92 3.28
71 72 2.959507 ACCAGTGTTTTCTGCCAAAC 57.040 45.000 0.00 0.00 37.20 2.93
72 73 2.456577 ACCAGTGTTTTCTGCCAAACT 58.543 42.857 5.24 0.00 37.51 2.66
73 74 3.626930 ACCAGTGTTTTCTGCCAAACTA 58.373 40.909 5.24 0.00 37.51 2.24
74 75 4.215109 ACCAGTGTTTTCTGCCAAACTAT 58.785 39.130 5.24 0.00 37.51 2.12
75 76 4.037923 ACCAGTGTTTTCTGCCAAACTATG 59.962 41.667 5.24 4.22 37.51 2.23
76 77 4.037923 CCAGTGTTTTCTGCCAAACTATGT 59.962 41.667 5.24 0.00 37.51 2.29
77 78 4.977963 CAGTGTTTTCTGCCAAACTATGTG 59.022 41.667 5.24 0.00 37.51 3.21
78 79 4.887071 AGTGTTTTCTGCCAAACTATGTGA 59.113 37.500 5.24 0.00 37.51 3.58
79 80 5.536161 AGTGTTTTCTGCCAAACTATGTGAT 59.464 36.000 5.24 0.00 37.51 3.06
80 81 6.714810 AGTGTTTTCTGCCAAACTATGTGATA 59.285 34.615 5.24 0.00 37.51 2.15
81 82 7.230510 AGTGTTTTCTGCCAAACTATGTGATAA 59.769 33.333 5.24 0.00 37.51 1.75
82 83 8.028938 GTGTTTTCTGCCAAACTATGTGATAAT 58.971 33.333 5.24 0.00 37.51 1.28
83 84 8.028354 TGTTTTCTGCCAAACTATGTGATAATG 58.972 33.333 5.24 0.00 37.51 1.90
84 85 7.701539 TTTCTGCCAAACTATGTGATAATGT 57.298 32.000 0.00 0.00 0.00 2.71
85 86 6.682423 TCTGCCAAACTATGTGATAATGTG 57.318 37.500 0.00 0.00 0.00 3.21
86 87 5.589855 TCTGCCAAACTATGTGATAATGTGG 59.410 40.000 0.00 0.00 0.00 4.17
87 88 5.260424 TGCCAAACTATGTGATAATGTGGT 58.740 37.500 0.00 0.00 0.00 4.16
88 89 5.125257 TGCCAAACTATGTGATAATGTGGTG 59.875 40.000 0.00 0.00 0.00 4.17
89 90 5.450412 GCCAAACTATGTGATAATGTGGTGG 60.450 44.000 0.00 0.00 0.00 4.61
90 91 5.652014 CCAAACTATGTGATAATGTGGTGGT 59.348 40.000 0.00 0.00 0.00 4.16
91 92 6.152661 CCAAACTATGTGATAATGTGGTGGTT 59.847 38.462 0.00 0.00 0.00 3.67
92 93 7.309744 CCAAACTATGTGATAATGTGGTGGTTT 60.310 37.037 0.00 0.00 0.00 3.27
93 94 7.391148 AACTATGTGATAATGTGGTGGTTTC 57.609 36.000 0.00 0.00 0.00 2.78
94 95 6.480763 ACTATGTGATAATGTGGTGGTTTCA 58.519 36.000 0.00 0.00 0.00 2.69
95 96 7.118723 ACTATGTGATAATGTGGTGGTTTCAT 58.881 34.615 0.00 0.00 0.00 2.57
96 97 5.641783 TGTGATAATGTGGTGGTTTCATG 57.358 39.130 0.00 0.00 0.00 3.07
97 98 4.082300 TGTGATAATGTGGTGGTTTCATGC 60.082 41.667 0.00 0.00 0.00 4.06
98 99 4.082300 GTGATAATGTGGTGGTTTCATGCA 60.082 41.667 0.00 0.00 0.00 3.96
99 100 4.710865 TGATAATGTGGTGGTTTCATGCAT 59.289 37.500 0.00 0.00 0.00 3.96
100 101 5.187381 TGATAATGTGGTGGTTTCATGCATT 59.813 36.000 0.00 0.00 0.00 3.56
101 102 4.354893 AATGTGGTGGTTTCATGCATTT 57.645 36.364 0.00 0.00 0.00 2.32
102 103 3.383620 TGTGGTGGTTTCATGCATTTC 57.616 42.857 0.00 0.00 0.00 2.17
103 104 2.697229 TGTGGTGGTTTCATGCATTTCA 59.303 40.909 0.00 0.00 0.00 2.69
104 105 3.059166 GTGGTGGTTTCATGCATTTCAC 58.941 45.455 0.00 1.43 0.00 3.18
105 106 2.964464 TGGTGGTTTCATGCATTTCACT 59.036 40.909 0.00 0.00 0.00 3.41
106 107 3.005684 TGGTGGTTTCATGCATTTCACTC 59.994 43.478 0.00 0.00 0.00 3.51
107 108 3.578688 GTGGTTTCATGCATTTCACTCC 58.421 45.455 0.00 0.00 0.00 3.85
108 109 3.256631 GTGGTTTCATGCATTTCACTCCT 59.743 43.478 0.00 0.00 0.00 3.69
109 110 3.507233 TGGTTTCATGCATTTCACTCCTC 59.493 43.478 0.00 0.00 0.00 3.71
110 111 3.507233 GGTTTCATGCATTTCACTCCTCA 59.493 43.478 0.00 0.00 0.00 3.86
111 112 4.022068 GGTTTCATGCATTTCACTCCTCAA 60.022 41.667 0.00 0.00 0.00 3.02
112 113 5.159209 GTTTCATGCATTTCACTCCTCAAG 58.841 41.667 0.00 0.00 0.00 3.02
113 114 2.751259 TCATGCATTTCACTCCTCAAGC 59.249 45.455 0.00 0.00 0.00 4.01
114 115 1.538047 TGCATTTCACTCCTCAAGCC 58.462 50.000 0.00 0.00 0.00 4.35
115 116 0.449388 GCATTTCACTCCTCAAGCCG 59.551 55.000 0.00 0.00 0.00 5.52
116 117 1.945819 GCATTTCACTCCTCAAGCCGA 60.946 52.381 0.00 0.00 0.00 5.54
117 118 1.734465 CATTTCACTCCTCAAGCCGAC 59.266 52.381 0.00 0.00 0.00 4.79
132 133 2.874751 GACCCCATTTTGCGGTCG 59.125 61.111 0.00 0.00 36.97 4.79
178 179 0.253044 ACTTGTGTGGCTGTCAGTGT 59.747 50.000 0.93 0.00 0.00 3.55
212 213 7.615365 TCTTTTGCTGGGATGATTACTGTTAAT 59.385 33.333 0.00 0.00 0.00 1.40
214 215 7.801716 TTGCTGGGATGATTACTGTTAATAC 57.198 36.000 0.00 0.00 0.00 1.89
217 218 8.710239 TGCTGGGATGATTACTGTTAATACTTA 58.290 33.333 0.00 0.00 0.00 2.24
218 219 9.726438 GCTGGGATGATTACTGTTAATACTTAT 57.274 33.333 0.00 0.00 0.00 1.73
230 231 9.159364 ACTGTTAATACTTATTTCCTCCGTTTC 57.841 33.333 0.00 0.00 0.00 2.78
231 232 9.158233 CTGTTAATACTTATTTCCTCCGTTTCA 57.842 33.333 0.00 0.00 0.00 2.69
232 233 9.504708 TGTTAATACTTATTTCCTCCGTTTCAA 57.495 29.630 0.00 0.00 0.00 2.69
238 239 8.631480 ACTTATTTCCTCCGTTTCAAATTACT 57.369 30.769 0.00 0.00 0.00 2.24
239 240 9.074576 ACTTATTTCCTCCGTTTCAAATTACTT 57.925 29.630 0.00 0.00 0.00 2.24
240 241 9.341899 CTTATTTCCTCCGTTTCAAATTACTTG 57.658 33.333 0.00 0.00 36.25 3.16
241 242 6.702716 TTTCCTCCGTTTCAAATTACTTGT 57.297 33.333 0.00 0.00 36.34 3.16
242 243 5.934935 TCCTCCGTTTCAAATTACTTGTC 57.065 39.130 0.00 0.00 36.34 3.18
243 244 4.449743 TCCTCCGTTTCAAATTACTTGTCG 59.550 41.667 0.00 0.00 36.34 4.35
244 245 4.212636 CCTCCGTTTCAAATTACTTGTCGT 59.787 41.667 0.00 0.00 36.34 4.34
245 246 5.085636 TCCGTTTCAAATTACTTGTCGTG 57.914 39.130 0.00 0.00 36.34 4.35
246 247 4.024725 TCCGTTTCAAATTACTTGTCGTGG 60.025 41.667 0.00 0.00 36.34 4.94
247 248 4.260866 CCGTTTCAAATTACTTGTCGTGGT 60.261 41.667 0.00 0.00 36.34 4.16
248 249 5.267776 CGTTTCAAATTACTTGTCGTGGTT 58.732 37.500 0.00 0.00 36.34 3.67
249 250 5.740099 CGTTTCAAATTACTTGTCGTGGTTT 59.260 36.000 0.00 0.00 36.34 3.27
250 251 6.251801 CGTTTCAAATTACTTGTCGTGGTTTT 59.748 34.615 0.00 0.00 36.34 2.43
251 252 7.428761 CGTTTCAAATTACTTGTCGTGGTTTTA 59.571 33.333 0.00 0.00 36.34 1.52
252 253 8.739461 GTTTCAAATTACTTGTCGTGGTTTTAG 58.261 33.333 0.00 0.00 36.34 1.85
253 254 7.556733 TCAAATTACTTGTCGTGGTTTTAGT 57.443 32.000 0.00 0.00 36.34 2.24
254 255 7.987649 TCAAATTACTTGTCGTGGTTTTAGTT 58.012 30.769 0.00 0.00 36.34 2.24
255 256 8.460428 TCAAATTACTTGTCGTGGTTTTAGTTT 58.540 29.630 0.00 0.00 36.34 2.66
256 257 9.719279 CAAATTACTTGTCGTGGTTTTAGTTTA 57.281 29.630 0.00 0.00 0.00 2.01
268 269 9.832473 CGTGGTTTTAGTTTAAATTTAAAACGG 57.168 29.630 21.81 19.13 43.26 4.44
331 332 2.402787 GACTAGCCGACGTCGACC 59.597 66.667 37.65 26.32 43.02 4.79
332 333 2.046507 ACTAGCCGACGTCGACCT 60.047 61.111 37.65 30.85 43.02 3.85
333 334 2.307137 GACTAGCCGACGTCGACCTG 62.307 65.000 37.65 23.21 43.02 4.00
334 335 2.359107 TAGCCGACGTCGACCTGT 60.359 61.111 37.65 18.79 43.02 4.00
335 336 2.579241 CTAGCCGACGTCGACCTGTG 62.579 65.000 37.65 20.96 43.02 3.66
336 337 4.338539 GCCGACGTCGACCTGTGT 62.339 66.667 37.65 1.14 43.02 3.72
337 338 2.333938 CCGACGTCGACCTGTGTT 59.666 61.111 37.65 0.00 43.02 3.32
338 339 1.299620 CCGACGTCGACCTGTGTTT 60.300 57.895 37.65 0.00 43.02 2.83
339 340 0.040157 CCGACGTCGACCTGTGTTTA 60.040 55.000 37.65 0.00 43.02 2.01
340 341 1.401931 CCGACGTCGACCTGTGTTTAT 60.402 52.381 37.65 0.00 43.02 1.40
341 342 1.647213 CGACGTCGACCTGTGTTTATG 59.353 52.381 33.35 0.00 43.02 1.90
342 343 2.669364 GACGTCGACCTGTGTTTATGT 58.331 47.619 10.58 0.00 0.00 2.29
343 344 2.660236 GACGTCGACCTGTGTTTATGTC 59.340 50.000 10.58 3.63 0.00 3.06
350 351 4.495422 GACCTGTGTTTATGTCGAGATGT 58.505 43.478 5.12 0.00 0.00 3.06
351 352 4.245660 ACCTGTGTTTATGTCGAGATGTG 58.754 43.478 5.12 0.00 0.00 3.21
352 353 4.021456 ACCTGTGTTTATGTCGAGATGTGA 60.021 41.667 5.12 0.00 0.00 3.58
353 354 4.327357 CCTGTGTTTATGTCGAGATGTGAC 59.673 45.833 5.12 2.02 36.88 3.67
354 355 5.134202 TGTGTTTATGTCGAGATGTGACT 57.866 39.130 5.12 0.00 37.26 3.41
355 356 4.923281 TGTGTTTATGTCGAGATGTGACTG 59.077 41.667 5.12 0.00 37.26 3.51
356 357 3.926527 TGTTTATGTCGAGATGTGACTGC 59.073 43.478 5.12 0.00 37.26 4.40
357 358 3.866883 TTATGTCGAGATGTGACTGCA 57.133 42.857 5.12 0.00 37.26 4.41
358 359 2.749280 ATGTCGAGATGTGACTGCAA 57.251 45.000 0.00 0.00 37.26 4.08
359 360 2.749280 TGTCGAGATGTGACTGCAAT 57.251 45.000 0.00 0.00 37.26 3.56
360 361 2.340337 TGTCGAGATGTGACTGCAATG 58.660 47.619 0.00 0.00 37.26 2.82
361 362 2.289010 TGTCGAGATGTGACTGCAATGT 60.289 45.455 0.00 0.00 37.26 2.71
362 363 2.093310 GTCGAGATGTGACTGCAATGTG 59.907 50.000 0.00 0.00 33.54 3.21
363 364 1.201998 CGAGATGTGACTGCAATGTGC 60.202 52.381 0.00 0.00 45.29 4.57
364 365 1.131883 GAGATGTGACTGCAATGTGCC 59.868 52.381 0.00 0.00 44.23 5.01
365 366 0.883153 GATGTGACTGCAATGTGCCA 59.117 50.000 0.00 0.00 44.23 4.92
366 367 0.599558 ATGTGACTGCAATGTGCCAC 59.400 50.000 0.00 0.00 44.23 5.01
367 368 0.750911 TGTGACTGCAATGTGCCACA 60.751 50.000 0.00 0.00 44.23 4.17
368 369 0.039798 GTGACTGCAATGTGCCACAG 60.040 55.000 3.00 0.00 44.23 3.66
477 478 4.459089 GAGGGGCTCTGCGTGGAC 62.459 72.222 0.00 0.00 0.00 4.02
489 490 1.734477 CGTGGACAGGCTGAAGACG 60.734 63.158 23.66 19.79 0.00 4.18
492 493 0.756294 TGGACAGGCTGAAGACGAAA 59.244 50.000 23.66 0.00 0.00 3.46
493 494 1.347707 TGGACAGGCTGAAGACGAAAT 59.652 47.619 23.66 0.00 0.00 2.17
495 496 2.003301 GACAGGCTGAAGACGAAATCC 58.997 52.381 23.66 0.00 0.00 3.01
498 499 3.077359 CAGGCTGAAGACGAAATCCTTT 58.923 45.455 9.42 0.00 0.00 3.11
584 592 2.332654 GCGGCCGACCACTGAAAAT 61.333 57.895 33.48 0.00 34.57 1.82
585 593 1.862602 GCGGCCGACCACTGAAAATT 61.863 55.000 33.48 0.00 34.57 1.82
586 594 0.596082 CGGCCGACCACTGAAAATTT 59.404 50.000 24.07 0.00 34.57 1.82
587 595 1.000717 CGGCCGACCACTGAAAATTTT 60.001 47.619 24.07 2.28 34.57 1.82
590 598 3.243737 GGCCGACCACTGAAAATTTTTCT 60.244 43.478 19.64 2.53 35.26 2.52
616 646 2.976356 GGCCTCGGTAACCTTCGT 59.024 61.111 0.00 0.00 0.00 3.85
617 647 1.294459 GGCCTCGGTAACCTTCGTT 59.706 57.895 0.00 0.00 35.90 3.85
627 657 4.568956 GGTAACCTTCGTTGTTAAGGCTA 58.431 43.478 1.80 0.00 46.29 3.93
630 660 4.347360 ACCTTCGTTGTTAAGGCTAAGT 57.653 40.909 1.80 0.00 46.29 2.24
632 662 5.857268 ACCTTCGTTGTTAAGGCTAAGTTA 58.143 37.500 1.80 0.00 46.29 2.24
637 667 5.477984 TCGTTGTTAAGGCTAAGTTAGAGGA 59.522 40.000 14.27 0.00 0.00 3.71
694 727 6.247903 TCGAAAATACGAATGCAATGTCTTC 58.752 36.000 0.00 0.00 39.34 2.87
698 731 8.841444 AAAATACGAATGCAATGTCTTCATAC 57.159 30.769 0.00 0.00 33.49 2.39
734 771 8.905103 TTGTTAACTGAAGTTTAAAGTGCTTC 57.095 30.769 7.22 9.14 39.31 3.86
766 813 9.039870 ACAAATCTAGATCAAAATCATCTCGTC 57.960 33.333 5.51 0.00 34.07 4.20
786 837 2.167487 TCCCACAGTTTTGAAAACCAGC 59.833 45.455 16.45 0.00 0.00 4.85
802 853 6.648879 AAACCAGCTAGTCTTGCAAAAATA 57.351 33.333 8.99 0.00 0.00 1.40
807 858 7.393234 ACCAGCTAGTCTTGCAAAAATACATAA 59.607 33.333 8.99 0.00 0.00 1.90
808 859 7.698130 CCAGCTAGTCTTGCAAAAATACATAAC 59.302 37.037 8.99 0.00 0.00 1.89
905 1019 9.485206 GTAAACAAAGTCTCACAAATAGTCCTA 57.515 33.333 0.00 0.00 0.00 2.94
970 1084 3.244670 CGAAGTATTCCGTCGTCGTAT 57.755 47.619 0.71 0.00 43.81 3.06
1114 1233 2.687566 TTCCGCCCCTCTCCTTCC 60.688 66.667 0.00 0.00 0.00 3.46
1187 1311 1.517832 GTCCGTCTCCATGGGTCTG 59.482 63.158 13.02 0.00 0.00 3.51
1272 1396 2.945278 TGGCTTTTAATTTGCTCTGCG 58.055 42.857 0.00 0.00 0.00 5.18
1474 1603 2.031420 GCTTCCGTGTAGGTTTTGGTTC 60.031 50.000 0.00 0.00 41.99 3.62
1475 1604 3.473625 CTTCCGTGTAGGTTTTGGTTCT 58.526 45.455 0.00 0.00 41.99 3.01
1492 1622 6.509418 TGGTTCTGGTTGTTAATTGATAGC 57.491 37.500 0.00 0.00 0.00 2.97
1506 1638 9.615295 GTTAATTGATAGCTTTACGTTTTGGAA 57.385 29.630 0.00 0.00 0.00 3.53
1553 1685 3.337358 TGTCTGTAATGCCATGTGTCTG 58.663 45.455 0.00 0.00 0.00 3.51
1563 1695 2.224606 CCATGTGTCTGCAGTTCTTGT 58.775 47.619 14.67 0.00 0.00 3.16
1699 2106 6.306643 TGGATAACAGATGTGGTTGTCATA 57.693 37.500 0.00 0.00 37.89 2.15
1740 2147 2.546373 GGTGAATGCAAACATGTGCTGT 60.546 45.455 0.00 0.00 45.17 4.40
1741 2148 2.473609 GTGAATGCAAACATGTGCTGTG 59.526 45.455 0.00 0.00 45.17 3.66
1742 2149 2.101082 TGAATGCAAACATGTGCTGTGT 59.899 40.909 0.00 0.00 45.17 3.72
1743 2150 2.427232 ATGCAAACATGTGCTGTGTC 57.573 45.000 0.00 0.00 45.17 3.67
1744 2151 0.385029 TGCAAACATGTGCTGTGTCC 59.615 50.000 0.00 0.00 45.17 4.02
1745 2152 0.670162 GCAAACATGTGCTGTGTCCT 59.330 50.000 0.00 0.00 41.51 3.85
1746 2153 1.601162 GCAAACATGTGCTGTGTCCTG 60.601 52.381 0.00 0.00 41.51 3.86
1787 2194 3.489180 AGTTCATACGTCCTCTGTTCG 57.511 47.619 0.00 0.00 0.00 3.95
1794 2201 3.417690 ACGTCCTCTGTTCGCTATTAC 57.582 47.619 0.00 0.00 0.00 1.89
1798 2205 4.438336 CGTCCTCTGTTCGCTATTACAAGA 60.438 45.833 0.00 0.00 0.00 3.02
1804 2211 7.148407 CCTCTGTTCGCTATTACAAGATGTTTT 60.148 37.037 0.00 0.00 0.00 2.43
1810 2217 8.138365 TCGCTATTACAAGATGTTTTGGATAC 57.862 34.615 0.00 0.00 32.32 2.24
1823 2230 9.125026 GATGTTTTGGATACTTCAATATGGACT 57.875 33.333 0.00 0.00 37.61 3.85
1830 2237 9.374711 TGGATACTTCAATATGGACTATGTACA 57.625 33.333 0.00 0.00 37.61 2.90
1850 2257 8.725405 TGTACAGACTGAAATGAGTAAACAAA 57.275 30.769 10.08 0.00 0.00 2.83
1877 2284 8.053026 ACACTAAAACGTGTCTAGATACATCT 57.947 34.615 18.39 3.73 44.32 2.90
1918 2325 9.976511 TTAGAACATCTTATAATAGTGAACGGG 57.023 33.333 0.00 0.00 0.00 5.28
1949 2356 6.571624 ACTATATAGAGGGGGCATCAACTTA 58.428 40.000 16.79 0.00 0.00 2.24
1981 2389 8.956426 GTGAGTAATCCTTACCATGAAATCAAA 58.044 33.333 0.00 0.00 36.81 2.69
2013 2422 8.752766 AATTGCAAAAACAGATGATTAGTCTG 57.247 30.769 1.71 1.85 46.60 3.51
2039 2448 0.598065 GCGAAAACCTCTGTTGCCAT 59.402 50.000 0.00 0.00 34.13 4.40
2040 2449 1.666888 GCGAAAACCTCTGTTGCCATG 60.667 52.381 0.00 0.00 34.13 3.66
2047 2456 0.376152 CTCTGTTGCCATGATGTCGC 59.624 55.000 0.00 0.00 0.00 5.19
2074 2484 8.447787 AATTATTTGCGTATTTGTCAGAACAC 57.552 30.769 0.00 0.00 34.35 3.32
2082 2492 6.509677 GCGTATTTGTCAGAACACTAATAGGC 60.510 42.308 12.94 12.94 39.83 3.93
2187 2597 1.362224 CCAGAGGAAGGGACCAAGAA 58.638 55.000 0.00 0.00 0.00 2.52
2202 2612 2.224305 CCAAGAAGTCGGAACAGGAACT 60.224 50.000 0.00 0.00 43.88 3.01
2226 2636 6.441274 TGTCATTGATTTTCTTCTTGTGAGC 58.559 36.000 0.00 0.00 0.00 4.26
2237 2647 0.615331 CTTGTGAGCTCTGGCCCTAA 59.385 55.000 16.19 0.00 39.73 2.69
2250 2660 0.837272 GCCCTAATAGGAGCACCACA 59.163 55.000 8.12 0.00 37.67 4.17
2310 2720 1.878102 GCGGAGACAAATGGTGTGACT 60.878 52.381 0.00 0.00 41.96 3.41
2382 2792 2.737376 GACGTCAACCCGGCACTC 60.737 66.667 11.55 0.00 35.41 3.51
2607 3017 1.221840 GGCTGTGTCCATCATCGGT 59.778 57.895 0.00 0.00 0.00 4.69
2631 3041 1.311859 CTCTTGCTGCTGTGGTTTCA 58.688 50.000 0.00 0.00 0.00 2.69
2655 3065 1.276989 CCTTTCCGCCTAGTAACCACA 59.723 52.381 0.00 0.00 0.00 4.17
2673 3083 3.346315 CACAAACATCTATGGAGTGGCA 58.654 45.455 0.00 0.00 0.00 4.92
2685 3095 0.607489 GAGTGGCAGTGATGGCTGTT 60.607 55.000 0.00 0.00 38.65 3.16
2746 3156 2.853914 GCCGAGACGTGCTGAAAC 59.146 61.111 0.00 0.00 0.00 2.78
2874 3284 1.733912 CTCGTTGCTGCTTAGAATGCA 59.266 47.619 0.00 0.00 38.81 3.96
2938 3348 3.825014 ACTACTGCTATATGTACCACCGG 59.175 47.826 0.00 0.00 0.00 5.28
2942 3352 5.081728 ACTGCTATATGTACCACCGGAATA 58.918 41.667 9.46 0.00 0.00 1.75
3011 3422 0.598680 AAGAGCTGTGTGTCGAGTGC 60.599 55.000 0.00 0.00 0.00 4.40
3129 3542 4.161377 ACTCCTGTCTATTTCTGGCTTCTC 59.839 45.833 0.00 0.00 0.00 2.87
3211 3624 3.552604 TGGCTTTCATTCTAAACACGC 57.447 42.857 0.00 0.00 0.00 5.34
3221 3634 5.868258 TCATTCTAAACACGCGGTACAAATA 59.132 36.000 12.47 0.00 0.00 1.40
3232 3645 4.843984 CGCGGTACAAATAAACTGAAACAG 59.156 41.667 0.00 0.00 37.52 3.16
3233 3646 5.333492 CGCGGTACAAATAAACTGAAACAGA 60.333 40.000 0.00 0.00 35.18 3.41
3269 3682 5.063204 CACATTTTCTTGTGGTCCTGTAGA 58.937 41.667 0.00 0.00 42.63 2.59
3284 3697 2.869801 CTGTAGAACTGCCAAAACGTCA 59.130 45.455 0.00 0.00 0.00 4.35
3302 3715 5.479306 ACGTCATACATTGCTTTACAGAGT 58.521 37.500 0.00 0.00 0.00 3.24
3304 3717 5.576774 CGTCATACATTGCTTTACAGAGTGA 59.423 40.000 0.00 0.00 0.00 3.41
3350 3763 3.244582 TGAGGGCAAGTCTACCTAACAA 58.755 45.455 0.00 0.00 34.02 2.83
3435 3848 5.759763 TGAAGTGGCTGCATATAAGTGTATG 59.240 40.000 0.50 0.00 35.61 2.39
3469 3882 4.569719 ATGGAGTAACTGAATTTCGGGT 57.430 40.909 9.94 5.60 0.00 5.28
3545 4013 3.859961 CCTACTAATGCGTCAACTCACAG 59.140 47.826 0.00 0.00 0.00 3.66
3562 4030 3.632145 TCACAGTTCTCTTTCCTTTTGCC 59.368 43.478 0.00 0.00 0.00 4.52
3563 4031 3.633986 CACAGTTCTCTTTCCTTTTGCCT 59.366 43.478 0.00 0.00 0.00 4.75
3564 4032 3.885901 ACAGTTCTCTTTCCTTTTGCCTC 59.114 43.478 0.00 0.00 0.00 4.70
3565 4033 3.254411 CAGTTCTCTTTCCTTTTGCCTCC 59.746 47.826 0.00 0.00 0.00 4.30
3566 4034 3.139211 AGTTCTCTTTCCTTTTGCCTCCT 59.861 43.478 0.00 0.00 0.00 3.69
3567 4035 3.425162 TCTCTTTCCTTTTGCCTCCTC 57.575 47.619 0.00 0.00 0.00 3.71
3568 4036 2.982488 TCTCTTTCCTTTTGCCTCCTCT 59.018 45.455 0.00 0.00 0.00 3.69
3569 4037 3.008485 TCTCTTTCCTTTTGCCTCCTCTC 59.992 47.826 0.00 0.00 0.00 3.20
3570 4038 2.982488 TCTTTCCTTTTGCCTCCTCTCT 59.018 45.455 0.00 0.00 0.00 3.10
3571 4039 3.008485 TCTTTCCTTTTGCCTCCTCTCTC 59.992 47.826 0.00 0.00 0.00 3.20
3572 4040 2.030027 TCCTTTTGCCTCCTCTCTCA 57.970 50.000 0.00 0.00 0.00 3.27
3573 4041 2.555664 TCCTTTTGCCTCCTCTCTCAT 58.444 47.619 0.00 0.00 0.00 2.90
3574 4042 2.238144 TCCTTTTGCCTCCTCTCTCATG 59.762 50.000 0.00 0.00 0.00 3.07
3575 4043 2.641305 CTTTTGCCTCCTCTCTCATGG 58.359 52.381 0.00 0.00 0.00 3.66
3576 4044 1.956869 TTTGCCTCCTCTCTCATGGA 58.043 50.000 0.00 0.00 0.00 3.41
3577 4045 2.187239 TTGCCTCCTCTCTCATGGAT 57.813 50.000 0.00 0.00 0.00 3.41
3578 4046 2.187239 TGCCTCCTCTCTCATGGATT 57.813 50.000 0.00 0.00 0.00 3.01
3579 4047 2.485659 TGCCTCCTCTCTCATGGATTT 58.514 47.619 0.00 0.00 0.00 2.17
3580 4048 2.172082 TGCCTCCTCTCTCATGGATTTG 59.828 50.000 0.00 0.00 0.00 2.32
3581 4049 2.486907 GCCTCCTCTCTCATGGATTTGG 60.487 54.545 0.00 0.00 0.00 3.28
3582 4050 2.486907 CCTCCTCTCTCATGGATTTGGC 60.487 54.545 0.00 0.00 0.00 4.52
3583 4051 1.492176 TCCTCTCTCATGGATTTGGCC 59.508 52.381 0.00 0.00 0.00 5.36
3584 4052 1.478288 CCTCTCTCATGGATTTGGCCC 60.478 57.143 0.00 0.00 0.00 5.80
3585 4053 0.552848 TCTCTCATGGATTTGGCCCC 59.447 55.000 0.00 0.00 0.00 5.80
3586 4054 0.554792 CTCTCATGGATTTGGCCCCT 59.445 55.000 0.00 0.00 0.00 4.79
3587 4055 0.552848 TCTCATGGATTTGGCCCCTC 59.447 55.000 0.00 0.00 0.00 4.30
3588 4056 0.554792 CTCATGGATTTGGCCCCTCT 59.445 55.000 0.00 0.00 0.00 3.69
3589 4057 0.552848 TCATGGATTTGGCCCCTCTC 59.447 55.000 0.00 0.00 0.00 3.20
3590 4058 0.554792 CATGGATTTGGCCCCTCTCT 59.445 55.000 0.00 0.00 0.00 3.10
3591 4059 0.849417 ATGGATTTGGCCCCTCTCTC 59.151 55.000 0.00 0.00 0.00 3.20
3592 4060 0.253347 TGGATTTGGCCCCTCTCTCT 60.253 55.000 0.00 0.00 0.00 3.10
3593 4061 0.472044 GGATTTGGCCCCTCTCTCTC 59.528 60.000 0.00 0.00 0.00 3.20
3594 4062 1.506025 GATTTGGCCCCTCTCTCTCT 58.494 55.000 0.00 0.00 0.00 3.10
3595 4063 1.416030 GATTTGGCCCCTCTCTCTCTC 59.584 57.143 0.00 0.00 0.00 3.20
3596 4064 0.415429 TTTGGCCCCTCTCTCTCTCT 59.585 55.000 0.00 0.00 0.00 3.10
3597 4065 0.032615 TTGGCCCCTCTCTCTCTCTC 60.033 60.000 0.00 0.00 0.00 3.20
3598 4066 0.923729 TGGCCCCTCTCTCTCTCTCT 60.924 60.000 0.00 0.00 0.00 3.10
3599 4067 0.178990 GGCCCCTCTCTCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
3600 4068 0.550914 GCCCCTCTCTCTCTCTCTCA 59.449 60.000 0.00 0.00 0.00 3.27
3601 4069 1.145738 GCCCCTCTCTCTCTCTCTCAT 59.854 57.143 0.00 0.00 0.00 2.90
3602 4070 2.424812 GCCCCTCTCTCTCTCTCTCATT 60.425 54.545 0.00 0.00 0.00 2.57
3603 4071 3.225104 CCCCTCTCTCTCTCTCTCATTG 58.775 54.545 0.00 0.00 0.00 2.82
3604 4072 3.117550 CCCCTCTCTCTCTCTCTCATTGA 60.118 52.174 0.00 0.00 0.00 2.57
3605 4073 4.448200 CCCCTCTCTCTCTCTCTCATTGAT 60.448 50.000 0.00 0.00 0.00 2.57
3606 4074 5.142639 CCCTCTCTCTCTCTCTCATTGATT 58.857 45.833 0.00 0.00 0.00 2.57
3607 4075 5.599656 CCCTCTCTCTCTCTCTCATTGATTT 59.400 44.000 0.00 0.00 0.00 2.17
3608 4076 6.098695 CCCTCTCTCTCTCTCTCATTGATTTT 59.901 42.308 0.00 0.00 0.00 1.82
3609 4077 7.205297 CCTCTCTCTCTCTCTCATTGATTTTC 58.795 42.308 0.00 0.00 0.00 2.29
3610 4078 6.794374 TCTCTCTCTCTCTCATTGATTTTCG 58.206 40.000 0.00 0.00 0.00 3.46
3611 4079 5.900425 TCTCTCTCTCTCATTGATTTTCGG 58.100 41.667 0.00 0.00 0.00 4.30
3612 4080 5.654209 TCTCTCTCTCTCATTGATTTTCGGA 59.346 40.000 0.00 0.00 0.00 4.55
3613 4081 5.900425 TCTCTCTCTCATTGATTTTCGGAG 58.100 41.667 0.00 0.00 0.00 4.63
3614 4082 5.420421 TCTCTCTCTCATTGATTTTCGGAGT 59.580 40.000 0.00 0.00 0.00 3.85
3615 4083 6.042638 TCTCTCTCATTGATTTTCGGAGTT 57.957 37.500 0.00 0.00 0.00 3.01
3616 4084 5.871524 TCTCTCTCATTGATTTTCGGAGTTG 59.128 40.000 0.00 0.00 0.00 3.16
3617 4085 5.793817 TCTCTCATTGATTTTCGGAGTTGA 58.206 37.500 0.00 0.00 0.00 3.18
3618 4086 5.639506 TCTCTCATTGATTTTCGGAGTTGAC 59.360 40.000 0.00 0.00 0.00 3.18
3619 4087 5.304778 TCTCATTGATTTTCGGAGTTGACA 58.695 37.500 0.00 0.00 0.00 3.58
3620 4088 5.939883 TCTCATTGATTTTCGGAGTTGACAT 59.060 36.000 0.00 0.00 0.00 3.06
3621 4089 7.102993 TCTCATTGATTTTCGGAGTTGACATA 58.897 34.615 0.00 0.00 0.00 2.29
3622 4090 7.606073 TCTCATTGATTTTCGGAGTTGACATAA 59.394 33.333 0.00 0.00 0.00 1.90
3623 4091 7.751732 TCATTGATTTTCGGAGTTGACATAAG 58.248 34.615 0.00 0.00 0.00 1.73
3624 4092 7.390440 TCATTGATTTTCGGAGTTGACATAAGT 59.610 33.333 0.00 0.00 0.00 2.24
3625 4093 8.664798 CATTGATTTTCGGAGTTGACATAAGTA 58.335 33.333 0.00 0.00 0.00 2.24
3626 4094 8.786826 TTGATTTTCGGAGTTGACATAAGTAT 57.213 30.769 0.00 0.00 0.00 2.12
3627 4095 8.786826 TGATTTTCGGAGTTGACATAAGTATT 57.213 30.769 0.00 0.00 0.00 1.89
3628 4096 9.226606 TGATTTTCGGAGTTGACATAAGTATTT 57.773 29.630 0.00 0.00 0.00 1.40
3629 4097 9.490663 GATTTTCGGAGTTGACATAAGTATTTG 57.509 33.333 0.00 0.00 0.00 2.32
3630 4098 8.610248 TTTTCGGAGTTGACATAAGTATTTGA 57.390 30.769 0.00 0.00 0.00 2.69
3631 4099 8.786826 TTTCGGAGTTGACATAAGTATTTGAT 57.213 30.769 0.00 0.00 0.00 2.57
3632 4100 8.786826 TTCGGAGTTGACATAAGTATTTGATT 57.213 30.769 0.00 0.00 0.00 2.57
3633 4101 8.786826 TCGGAGTTGACATAAGTATTTGATTT 57.213 30.769 0.00 0.00 0.00 2.17
3634 4102 9.226606 TCGGAGTTGACATAAGTATTTGATTTT 57.773 29.630 0.00 0.00 0.00 1.82
3635 4103 9.840427 CGGAGTTGACATAAGTATTTGATTTTT 57.160 29.630 0.00 0.00 0.00 1.94
3647 4115 9.942850 AAGTATTTGATTTTTCATTAGGGGTTG 57.057 29.630 0.00 0.00 0.00 3.77
3648 4116 9.320295 AGTATTTGATTTTTCATTAGGGGTTGA 57.680 29.630 0.00 0.00 0.00 3.18
3649 4117 9.936759 GTATTTGATTTTTCATTAGGGGTTGAA 57.063 29.630 0.00 0.00 0.00 2.69
3650 4118 8.846943 ATTTGATTTTTCATTAGGGGTTGAAC 57.153 30.769 0.00 0.00 0.00 3.18
3651 4119 6.353404 TGATTTTTCATTAGGGGTTGAACC 57.647 37.500 5.62 5.62 37.60 3.62
3652 4120 5.841237 TGATTTTTCATTAGGGGTTGAACCA 59.159 36.000 17.27 0.00 41.02 3.67
3653 4121 6.327626 TGATTTTTCATTAGGGGTTGAACCAA 59.672 34.615 17.27 2.13 41.02 3.67
3654 4122 5.799827 TTTTCATTAGGGGTTGAACCAAG 57.200 39.130 17.27 0.00 41.02 3.61
3655 4123 2.802719 TCATTAGGGGTTGAACCAAGC 58.197 47.619 17.27 0.92 41.02 4.01
3656 4124 2.378547 TCATTAGGGGTTGAACCAAGCT 59.621 45.455 17.27 0.00 41.02 3.74
3657 4125 3.165071 CATTAGGGGTTGAACCAAGCTT 58.835 45.455 17.27 0.00 41.02 3.74
3658 4126 3.322191 TTAGGGGTTGAACCAAGCTTT 57.678 42.857 17.27 0.00 41.02 3.51
3659 4127 4.456662 TTAGGGGTTGAACCAAGCTTTA 57.543 40.909 17.27 0.00 41.02 1.85
3660 4128 3.542969 AGGGGTTGAACCAAGCTTTAT 57.457 42.857 17.27 0.00 41.02 1.40
3661 4129 3.856900 AGGGGTTGAACCAAGCTTTATT 58.143 40.909 17.27 0.00 41.02 1.40
3662 4130 5.005628 AGGGGTTGAACCAAGCTTTATTA 57.994 39.130 17.27 0.00 41.02 0.98
3663 4131 4.770531 AGGGGTTGAACCAAGCTTTATTAC 59.229 41.667 17.27 0.00 41.02 1.89
3664 4132 4.770531 GGGGTTGAACCAAGCTTTATTACT 59.229 41.667 17.27 0.00 41.02 2.24
3665 4133 5.105877 GGGGTTGAACCAAGCTTTATTACTC 60.106 44.000 17.27 0.00 41.02 2.59
3666 4134 5.391629 GGGTTGAACCAAGCTTTATTACTCG 60.392 44.000 17.27 0.00 41.02 4.18
3667 4135 5.410439 GGTTGAACCAAGCTTTATTACTCGA 59.590 40.000 9.98 0.00 38.60 4.04
3668 4136 6.072893 GGTTGAACCAAGCTTTATTACTCGAA 60.073 38.462 9.98 0.00 38.60 3.71
3669 4137 6.721571 TGAACCAAGCTTTATTACTCGAAG 57.278 37.500 0.00 0.00 0.00 3.79
3670 4138 6.228258 TGAACCAAGCTTTATTACTCGAAGT 58.772 36.000 0.00 0.00 0.00 3.01
3671 4139 6.367969 TGAACCAAGCTTTATTACTCGAAGTC 59.632 38.462 0.00 0.00 0.00 3.01
3672 4140 5.176592 ACCAAGCTTTATTACTCGAAGTCC 58.823 41.667 0.00 0.00 0.00 3.85
3673 4141 5.175859 CCAAGCTTTATTACTCGAAGTCCA 58.824 41.667 0.00 0.00 0.00 4.02
3674 4142 5.063564 CCAAGCTTTATTACTCGAAGTCCAC 59.936 44.000 0.00 0.00 0.00 4.02
3675 4143 5.401531 AGCTTTATTACTCGAAGTCCACA 57.598 39.130 0.00 0.00 0.00 4.17
3676 4144 5.978814 AGCTTTATTACTCGAAGTCCACAT 58.021 37.500 0.00 0.00 0.00 3.21
3677 4145 5.812642 AGCTTTATTACTCGAAGTCCACATG 59.187 40.000 0.00 0.00 0.00 3.21
3678 4146 5.006746 GCTTTATTACTCGAAGTCCACATGG 59.993 44.000 0.00 0.00 0.00 3.66
3679 4147 5.670792 TTATTACTCGAAGTCCACATGGT 57.329 39.130 0.00 0.00 36.34 3.55
3680 4148 3.313012 TTACTCGAAGTCCACATGGTG 57.687 47.619 0.00 0.00 36.34 4.17
3681 4149 1.048601 ACTCGAAGTCCACATGGTGT 58.951 50.000 0.00 0.00 36.34 4.16
3691 4159 2.816204 CACATGGTGTGGAATGCAAA 57.184 45.000 0.00 0.00 44.27 3.68
3692 4160 3.109044 CACATGGTGTGGAATGCAAAA 57.891 42.857 0.00 0.00 44.27 2.44
3693 4161 3.464907 CACATGGTGTGGAATGCAAAAA 58.535 40.909 0.00 0.00 44.27 1.94
3694 4162 3.495377 CACATGGTGTGGAATGCAAAAAG 59.505 43.478 0.00 0.00 44.27 2.27
3695 4163 2.906691 TGGTGTGGAATGCAAAAAGG 57.093 45.000 0.00 0.00 0.00 3.11
3696 4164 2.392662 TGGTGTGGAATGCAAAAAGGA 58.607 42.857 0.00 0.00 0.00 3.36
3697 4165 2.971330 TGGTGTGGAATGCAAAAAGGAT 59.029 40.909 0.00 0.00 0.00 3.24
3698 4166 3.006752 TGGTGTGGAATGCAAAAAGGATC 59.993 43.478 0.00 0.00 0.00 3.36
3699 4167 3.006752 GGTGTGGAATGCAAAAAGGATCA 59.993 43.478 0.00 0.00 0.00 2.92
3700 4168 4.322953 GGTGTGGAATGCAAAAAGGATCAT 60.323 41.667 0.00 0.00 0.00 2.45
3701 4169 4.628333 GTGTGGAATGCAAAAAGGATCATG 59.372 41.667 0.00 0.00 0.00 3.07
3702 4170 4.186159 GTGGAATGCAAAAAGGATCATGG 58.814 43.478 0.00 0.00 0.00 3.66
3703 4171 3.198200 TGGAATGCAAAAAGGATCATGGG 59.802 43.478 0.00 0.00 0.00 4.00
3704 4172 3.432608 GGAATGCAAAAAGGATCATGGGG 60.433 47.826 0.00 0.00 0.00 4.96
3705 4173 2.323999 TGCAAAAAGGATCATGGGGT 57.676 45.000 0.00 0.00 0.00 4.95
3706 4174 2.618794 TGCAAAAAGGATCATGGGGTT 58.381 42.857 0.00 0.00 0.00 4.11
3707 4175 2.302445 TGCAAAAAGGATCATGGGGTTG 59.698 45.455 0.00 0.00 0.00 3.77
3708 4176 2.355007 GCAAAAAGGATCATGGGGTTGG 60.355 50.000 0.00 0.00 0.00 3.77
3709 4177 2.905736 CAAAAAGGATCATGGGGTTGGT 59.094 45.455 0.00 0.00 0.00 3.67
3710 4178 2.532250 AAAGGATCATGGGGTTGGTC 57.468 50.000 0.00 0.00 0.00 4.02
3711 4179 1.686236 AAGGATCATGGGGTTGGTCT 58.314 50.000 0.00 0.00 0.00 3.85
3712 4180 2.587060 AGGATCATGGGGTTGGTCTA 57.413 50.000 0.00 0.00 0.00 2.59
3713 4181 2.858644 AGGATCATGGGGTTGGTCTAA 58.141 47.619 0.00 0.00 0.00 2.10
3714 4182 2.509964 AGGATCATGGGGTTGGTCTAAC 59.490 50.000 0.00 0.00 38.60 2.34
3736 4204 4.738998 CATGGCGCCCCTGGTCAA 62.739 66.667 26.77 1.65 0.00 3.18
3737 4205 4.431131 ATGGCGCCCCTGGTCAAG 62.431 66.667 26.77 0.00 0.00 3.02
3739 4207 4.785453 GGCGCCCCTGGTCAAGAG 62.785 72.222 18.11 0.00 0.00 2.85
3740 4208 3.706373 GCGCCCCTGGTCAAGAGA 61.706 66.667 0.00 0.00 0.00 3.10
3741 4209 3.068881 CGCCCCTGGTCAAGAGAA 58.931 61.111 0.00 0.00 0.00 2.87
3742 4210 1.604378 CGCCCCTGGTCAAGAGAAT 59.396 57.895 0.00 0.00 0.00 2.40
3743 4211 0.745845 CGCCCCTGGTCAAGAGAATG 60.746 60.000 0.00 0.00 0.00 2.67
3744 4212 0.329596 GCCCCTGGTCAAGAGAATGT 59.670 55.000 0.00 0.00 0.00 2.71
3745 4213 1.952367 GCCCCTGGTCAAGAGAATGTG 60.952 57.143 0.00 0.00 0.00 3.21
3746 4214 1.457346 CCCTGGTCAAGAGAATGTGC 58.543 55.000 0.00 0.00 0.00 4.57
3747 4215 1.004044 CCCTGGTCAAGAGAATGTGCT 59.996 52.381 0.00 0.00 0.00 4.40
3748 4216 2.553904 CCCTGGTCAAGAGAATGTGCTT 60.554 50.000 0.00 0.00 0.00 3.91
3749 4217 2.486982 CCTGGTCAAGAGAATGTGCTTG 59.513 50.000 0.00 0.00 42.10 4.01
3750 4218 3.144506 CTGGTCAAGAGAATGTGCTTGT 58.855 45.455 0.00 0.00 41.60 3.16
3751 4219 3.141398 TGGTCAAGAGAATGTGCTTGTC 58.859 45.455 0.00 0.00 41.60 3.18
3752 4220 2.158449 GGTCAAGAGAATGTGCTTGTCG 59.842 50.000 0.00 0.00 41.60 4.35
3753 4221 3.059884 GTCAAGAGAATGTGCTTGTCGA 58.940 45.455 0.00 0.00 41.60 4.20
3754 4222 3.122613 GTCAAGAGAATGTGCTTGTCGAG 59.877 47.826 0.00 0.00 41.60 4.04
3762 4230 2.738521 GCTTGTCGAGCCGCTTCA 60.739 61.111 0.00 0.00 46.01 3.02
3763 4231 2.103042 GCTTGTCGAGCCGCTTCAT 61.103 57.895 0.00 0.00 46.01 2.57
3764 4232 1.712081 CTTGTCGAGCCGCTTCATG 59.288 57.895 0.00 0.00 0.00 3.07
3765 4233 0.737367 CTTGTCGAGCCGCTTCATGA 60.737 55.000 0.00 0.00 0.00 3.07
3766 4234 0.320334 TTGTCGAGCCGCTTCATGAA 60.320 50.000 8.12 8.12 0.00 2.57
3767 4235 0.108186 TGTCGAGCCGCTTCATGAAT 60.108 50.000 8.96 0.00 0.00 2.57
3768 4236 1.009829 GTCGAGCCGCTTCATGAATT 58.990 50.000 8.96 0.00 0.00 2.17
3769 4237 1.398390 GTCGAGCCGCTTCATGAATTT 59.602 47.619 8.96 0.00 0.00 1.82
3770 4238 1.398041 TCGAGCCGCTTCATGAATTTG 59.602 47.619 8.96 0.00 0.00 2.32
3771 4239 1.131126 CGAGCCGCTTCATGAATTTGT 59.869 47.619 8.96 0.00 0.00 2.83
3772 4240 2.414559 CGAGCCGCTTCATGAATTTGTT 60.415 45.455 8.96 0.00 0.00 2.83
3773 4241 3.578688 GAGCCGCTTCATGAATTTGTTT 58.421 40.909 8.96 0.00 0.00 2.83
3774 4242 3.578688 AGCCGCTTCATGAATTTGTTTC 58.421 40.909 8.96 0.00 34.72 2.78
3792 4260 7.414814 TTGTTTCAACAAAGAAAAGGTTCAC 57.585 32.000 2.53 0.00 45.17 3.18
3793 4261 6.754193 TGTTTCAACAAAGAAAAGGTTCACT 58.246 32.000 0.00 0.00 39.05 3.41
3794 4262 7.213678 TGTTTCAACAAAGAAAAGGTTCACTT 58.786 30.769 0.00 0.00 39.05 3.16
3795 4263 8.361139 TGTTTCAACAAAGAAAAGGTTCACTTA 58.639 29.630 0.00 0.00 39.05 2.24
3796 4264 9.366216 GTTTCAACAAAGAAAAGGTTCACTTAT 57.634 29.630 0.00 0.00 38.85 1.73
3797 4265 9.936759 TTTCAACAAAGAAAAGGTTCACTTATT 57.063 25.926 0.00 0.00 38.85 1.40
3798 4266 9.581099 TTCAACAAAGAAAAGGTTCACTTATTC 57.419 29.630 0.00 0.00 38.85 1.75
3799 4267 8.744652 TCAACAAAGAAAAGGTTCACTTATTCA 58.255 29.630 0.00 0.00 38.85 2.57
3800 4268 9.364989 CAACAAAGAAAAGGTTCACTTATTCAA 57.635 29.630 0.00 0.00 38.85 2.69
3801 4269 9.936759 AACAAAGAAAAGGTTCACTTATTCAAA 57.063 25.926 0.00 0.00 38.85 2.69
3802 4270 9.936759 ACAAAGAAAAGGTTCACTTATTCAAAA 57.063 25.926 0.00 0.00 38.85 2.44
3848 4316 9.717892 AAAGTTCACTAATTCGAGAAAAAGTTC 57.282 29.630 0.00 0.00 0.00 3.01
3849 4317 8.433421 AGTTCACTAATTCGAGAAAAAGTTCA 57.567 30.769 0.00 0.00 36.09 3.18
3850 4318 9.057089 AGTTCACTAATTCGAGAAAAAGTTCAT 57.943 29.630 0.00 0.00 36.09 2.57
3967 4435 9.617523 AATGAACATTTTGAAAAAGTTCAGGAT 57.382 25.926 31.37 22.34 44.49 3.24
4079 4547 9.533253 AAAAAGTTCATCGATTTTCATGAAAGT 57.467 25.926 19.64 17.50 40.01 2.66
4080 4548 9.533253 AAAAGTTCATCGATTTTCATGAAAGTT 57.467 25.926 19.64 12.26 40.01 2.66
4081 4549 8.511465 AAGTTCATCGATTTTCATGAAAGTTG 57.489 30.769 19.64 19.77 40.01 3.16
4082 4550 7.874940 AGTTCATCGATTTTCATGAAAGTTGA 58.125 30.769 26.75 26.75 40.01 3.18
4083 4551 7.805071 AGTTCATCGATTTTCATGAAAGTTGAC 59.195 33.333 26.99 18.22 40.01 3.18
4084 4552 6.306397 TCATCGATTTTCATGAAAGTTGACG 58.694 36.000 26.99 21.87 34.59 4.35
4085 4553 5.915812 TCGATTTTCATGAAAGTTGACGA 57.084 34.783 22.99 19.70 29.09 4.20
4086 4554 5.915857 TCGATTTTCATGAAAGTTGACGAG 58.084 37.500 22.99 10.86 29.09 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.325150 CGATTCTTCGCTTAATCTTTTACAAAA 57.675 29.630 0.00 0.00 38.75 2.44
3 4 7.118680 ACCGATTCTTCGCTTAATCTTTTACAA 59.881 33.333 0.00 0.00 44.12 2.41
5 6 6.900299 CACCGATTCTTCGCTTAATCTTTTAC 59.100 38.462 0.00 0.00 44.12 2.01
6 7 6.036735 CCACCGATTCTTCGCTTAATCTTTTA 59.963 38.462 0.00 0.00 44.12 1.52
7 8 5.163754 CCACCGATTCTTCGCTTAATCTTTT 60.164 40.000 0.00 0.00 44.12 2.27
8 9 4.332819 CCACCGATTCTTCGCTTAATCTTT 59.667 41.667 0.00 0.00 44.12 2.52
9 10 3.871594 CCACCGATTCTTCGCTTAATCTT 59.128 43.478 0.00 0.00 44.12 2.40
11 12 3.195661 ACCACCGATTCTTCGCTTAATC 58.804 45.455 0.00 0.00 44.12 1.75
12 13 3.261981 ACCACCGATTCTTCGCTTAAT 57.738 42.857 0.00 0.00 44.12 1.40
13 14 2.754946 ACCACCGATTCTTCGCTTAA 57.245 45.000 0.00 0.00 44.12 1.85
14 15 2.754946 AACCACCGATTCTTCGCTTA 57.245 45.000 0.00 0.00 44.12 3.09
15 16 1.892209 AAACCACCGATTCTTCGCTT 58.108 45.000 0.00 0.00 44.12 4.68
16 17 1.892209 AAAACCACCGATTCTTCGCT 58.108 45.000 0.00 0.00 44.12 4.93
17 18 2.031508 TCAAAAACCACCGATTCTTCGC 60.032 45.455 0.00 0.00 44.12 4.70
18 19 3.551551 GTCAAAAACCACCGATTCTTCG 58.448 45.455 0.00 0.00 45.08 3.79
31 32 5.811100 TGGTTTACGAATTTGGGTCAAAAAC 59.189 36.000 0.00 0.00 36.90 2.43
32 33 5.974108 TGGTTTACGAATTTGGGTCAAAAA 58.026 33.333 0.00 0.00 36.90 1.94
33 34 5.127356 ACTGGTTTACGAATTTGGGTCAAAA 59.873 36.000 0.00 0.00 36.90 2.44
34 35 4.645588 ACTGGTTTACGAATTTGGGTCAAA 59.354 37.500 0.00 0.00 37.75 2.69
35 36 4.036971 CACTGGTTTACGAATTTGGGTCAA 59.963 41.667 0.00 0.00 0.00 3.18
36 37 3.566322 CACTGGTTTACGAATTTGGGTCA 59.434 43.478 0.00 0.00 0.00 4.02
37 38 3.566742 ACACTGGTTTACGAATTTGGGTC 59.433 43.478 0.00 0.00 0.00 4.46
38 39 3.558033 ACACTGGTTTACGAATTTGGGT 58.442 40.909 0.00 0.00 0.00 4.51
39 40 4.577834 AACACTGGTTTACGAATTTGGG 57.422 40.909 0.00 0.00 31.83 4.12
40 41 6.198216 CAGAAAACACTGGTTTACGAATTTGG 59.802 38.462 0.00 0.00 46.20 3.28
41 42 6.291585 GCAGAAAACACTGGTTTACGAATTTG 60.292 38.462 0.00 0.00 46.20 2.32
42 43 5.746721 GCAGAAAACACTGGTTTACGAATTT 59.253 36.000 0.00 0.00 46.20 1.82
43 44 5.278604 GCAGAAAACACTGGTTTACGAATT 58.721 37.500 0.00 0.00 46.20 2.17
44 45 4.261447 GGCAGAAAACACTGGTTTACGAAT 60.261 41.667 0.00 0.00 46.20 3.34
45 46 3.065648 GGCAGAAAACACTGGTTTACGAA 59.934 43.478 0.00 0.00 46.20 3.85
46 47 2.614983 GGCAGAAAACACTGGTTTACGA 59.385 45.455 0.00 0.00 46.20 3.43
47 48 2.356382 TGGCAGAAAACACTGGTTTACG 59.644 45.455 0.00 0.00 46.20 3.18
48 49 4.379339 TTGGCAGAAAACACTGGTTTAC 57.621 40.909 0.00 0.00 46.20 2.01
49 50 4.464597 AGTTTGGCAGAAAACACTGGTTTA 59.535 37.500 10.38 0.00 46.20 2.01
51 52 2.831526 AGTTTGGCAGAAAACACTGGTT 59.168 40.909 10.38 0.00 41.56 3.67
52 53 2.456577 AGTTTGGCAGAAAACACTGGT 58.543 42.857 10.38 0.00 41.56 4.00
53 54 4.037923 ACATAGTTTGGCAGAAAACACTGG 59.962 41.667 10.38 2.07 41.56 4.00
54 55 4.977963 CACATAGTTTGGCAGAAAACACTG 59.022 41.667 10.38 9.11 41.56 3.66
55 56 4.887071 TCACATAGTTTGGCAGAAAACACT 59.113 37.500 10.38 0.00 41.56 3.55
56 57 5.181690 TCACATAGTTTGGCAGAAAACAC 57.818 39.130 10.38 0.00 41.56 3.32
57 58 7.517614 TTATCACATAGTTTGGCAGAAAACA 57.482 32.000 10.38 0.10 41.56 2.83
58 59 8.028938 ACATTATCACATAGTTTGGCAGAAAAC 58.971 33.333 0.00 1.77 39.80 2.43
59 60 8.028354 CACATTATCACATAGTTTGGCAGAAAA 58.972 33.333 0.00 0.00 0.00 2.29
60 61 7.362834 CCACATTATCACATAGTTTGGCAGAAA 60.363 37.037 0.00 0.00 0.00 2.52
61 62 6.095300 CCACATTATCACATAGTTTGGCAGAA 59.905 38.462 0.00 0.00 0.00 3.02
62 63 5.589855 CCACATTATCACATAGTTTGGCAGA 59.410 40.000 0.00 0.00 0.00 4.26
63 64 5.357878 ACCACATTATCACATAGTTTGGCAG 59.642 40.000 0.00 0.00 0.00 4.85
64 65 5.125257 CACCACATTATCACATAGTTTGGCA 59.875 40.000 0.00 0.00 0.00 4.92
65 66 5.450412 CCACCACATTATCACATAGTTTGGC 60.450 44.000 0.00 0.00 0.00 4.52
66 67 5.652014 ACCACCACATTATCACATAGTTTGG 59.348 40.000 0.00 0.00 0.00 3.28
67 68 6.757897 ACCACCACATTATCACATAGTTTG 57.242 37.500 0.00 0.00 0.00 2.93
68 69 7.450014 TGAAACCACCACATTATCACATAGTTT 59.550 33.333 0.00 0.00 0.00 2.66
69 70 6.945435 TGAAACCACCACATTATCACATAGTT 59.055 34.615 0.00 0.00 0.00 2.24
70 71 6.480763 TGAAACCACCACATTATCACATAGT 58.519 36.000 0.00 0.00 0.00 2.12
71 72 7.420002 CATGAAACCACCACATTATCACATAG 58.580 38.462 0.00 0.00 0.00 2.23
72 73 6.183360 GCATGAAACCACCACATTATCACATA 60.183 38.462 0.00 0.00 0.00 2.29
73 74 5.394443 GCATGAAACCACCACATTATCACAT 60.394 40.000 0.00 0.00 0.00 3.21
74 75 4.082300 GCATGAAACCACCACATTATCACA 60.082 41.667 0.00 0.00 0.00 3.58
75 76 4.082300 TGCATGAAACCACCACATTATCAC 60.082 41.667 0.00 0.00 0.00 3.06
76 77 4.085009 TGCATGAAACCACCACATTATCA 58.915 39.130 0.00 0.00 0.00 2.15
77 78 4.717233 TGCATGAAACCACCACATTATC 57.283 40.909 0.00 0.00 0.00 1.75
78 79 5.680594 AATGCATGAAACCACCACATTAT 57.319 34.783 0.00 0.00 0.00 1.28
79 80 5.011431 TGAAATGCATGAAACCACCACATTA 59.989 36.000 0.00 0.00 0.00 1.90
80 81 4.202336 TGAAATGCATGAAACCACCACATT 60.202 37.500 0.00 0.00 0.00 2.71
81 82 3.324268 TGAAATGCATGAAACCACCACAT 59.676 39.130 0.00 0.00 0.00 3.21
82 83 2.697229 TGAAATGCATGAAACCACCACA 59.303 40.909 0.00 0.00 0.00 4.17
83 84 3.059166 GTGAAATGCATGAAACCACCAC 58.941 45.455 0.00 0.00 0.00 4.16
84 85 2.964464 AGTGAAATGCATGAAACCACCA 59.036 40.909 0.00 0.00 0.00 4.17
85 86 3.578688 GAGTGAAATGCATGAAACCACC 58.421 45.455 0.00 0.00 0.00 4.61
86 87 3.256631 AGGAGTGAAATGCATGAAACCAC 59.743 43.478 0.00 4.63 0.00 4.16
87 88 3.499338 AGGAGTGAAATGCATGAAACCA 58.501 40.909 0.00 0.00 0.00 3.67
88 89 3.507233 TGAGGAGTGAAATGCATGAAACC 59.493 43.478 0.00 0.00 0.00 3.27
89 90 4.771590 TGAGGAGTGAAATGCATGAAAC 57.228 40.909 0.00 0.00 0.00 2.78
90 91 4.321452 GCTTGAGGAGTGAAATGCATGAAA 60.321 41.667 0.00 0.00 0.00 2.69
91 92 3.192001 GCTTGAGGAGTGAAATGCATGAA 59.808 43.478 0.00 0.00 0.00 2.57
92 93 2.751259 GCTTGAGGAGTGAAATGCATGA 59.249 45.455 0.00 0.00 0.00 3.07
93 94 2.159282 GGCTTGAGGAGTGAAATGCATG 60.159 50.000 0.00 0.00 0.00 4.06
94 95 2.097825 GGCTTGAGGAGTGAAATGCAT 58.902 47.619 0.00 0.00 0.00 3.96
95 96 1.538047 GGCTTGAGGAGTGAAATGCA 58.462 50.000 0.00 0.00 0.00 3.96
96 97 0.449388 CGGCTTGAGGAGTGAAATGC 59.551 55.000 0.00 0.00 0.00 3.56
97 98 1.734465 GTCGGCTTGAGGAGTGAAATG 59.266 52.381 0.00 0.00 0.00 2.32
98 99 1.339151 GGTCGGCTTGAGGAGTGAAAT 60.339 52.381 0.00 0.00 0.00 2.17
99 100 0.034896 GGTCGGCTTGAGGAGTGAAA 59.965 55.000 0.00 0.00 0.00 2.69
100 101 1.671742 GGTCGGCTTGAGGAGTGAA 59.328 57.895 0.00 0.00 0.00 3.18
101 102 2.283529 GGGTCGGCTTGAGGAGTGA 61.284 63.158 0.00 0.00 0.00 3.41
102 103 2.266055 GGGTCGGCTTGAGGAGTG 59.734 66.667 0.00 0.00 0.00 3.51
103 104 3.003763 GGGGTCGGCTTGAGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
104 105 1.915078 AATGGGGTCGGCTTGAGGAG 61.915 60.000 0.00 0.00 0.00 3.69
105 106 1.497309 AAATGGGGTCGGCTTGAGGA 61.497 55.000 0.00 0.00 0.00 3.71
106 107 0.611896 AAAATGGGGTCGGCTTGAGG 60.612 55.000 0.00 0.00 0.00 3.86
107 108 0.527565 CAAAATGGGGTCGGCTTGAG 59.472 55.000 0.00 0.00 0.00 3.02
108 109 1.531739 GCAAAATGGGGTCGGCTTGA 61.532 55.000 0.00 0.00 0.00 3.02
109 110 1.079888 GCAAAATGGGGTCGGCTTG 60.080 57.895 0.00 0.00 0.00 4.01
110 111 2.635443 CGCAAAATGGGGTCGGCTT 61.635 57.895 0.00 0.00 0.00 4.35
111 112 3.061848 CGCAAAATGGGGTCGGCT 61.062 61.111 0.00 0.00 0.00 5.52
112 113 4.128388 CCGCAAAATGGGGTCGGC 62.128 66.667 5.36 0.00 44.53 5.54
132 133 3.062504 ACTGTACAAACAAACGAACGGTC 59.937 43.478 0.00 0.00 34.49 4.79
212 213 9.729281 AGTAATTTGAAACGGAGGAAATAAGTA 57.271 29.630 0.00 0.00 0.00 2.24
214 215 9.341899 CAAGTAATTTGAAACGGAGGAAATAAG 57.658 33.333 0.00 0.00 39.21 1.73
217 218 7.284919 ACAAGTAATTTGAAACGGAGGAAAT 57.715 32.000 0.00 0.00 39.21 2.17
218 219 6.512091 CGACAAGTAATTTGAAACGGAGGAAA 60.512 38.462 0.00 0.00 39.21 3.13
219 220 5.049954 CGACAAGTAATTTGAAACGGAGGAA 60.050 40.000 0.00 0.00 39.21 3.36
220 221 4.449743 CGACAAGTAATTTGAAACGGAGGA 59.550 41.667 0.00 0.00 39.21 3.71
221 222 4.212636 ACGACAAGTAATTTGAAACGGAGG 59.787 41.667 0.00 0.00 39.21 4.30
222 223 5.137403 CACGACAAGTAATTTGAAACGGAG 58.863 41.667 0.00 0.00 39.21 4.63
223 224 4.024725 CCACGACAAGTAATTTGAAACGGA 60.025 41.667 0.00 0.00 39.21 4.69
224 225 4.215965 CCACGACAAGTAATTTGAAACGG 58.784 43.478 0.00 0.00 39.21 4.44
225 226 4.839796 ACCACGACAAGTAATTTGAAACG 58.160 39.130 0.00 0.00 39.21 3.60
226 227 7.514573 AAAACCACGACAAGTAATTTGAAAC 57.485 32.000 0.00 0.00 39.21 2.78
227 228 8.460428 ACTAAAACCACGACAAGTAATTTGAAA 58.540 29.630 0.00 0.00 39.21 2.69
228 229 7.987649 ACTAAAACCACGACAAGTAATTTGAA 58.012 30.769 0.00 0.00 39.21 2.69
229 230 7.556733 ACTAAAACCACGACAAGTAATTTGA 57.443 32.000 0.00 0.00 39.21 2.69
230 231 8.623310 AAACTAAAACCACGACAAGTAATTTG 57.377 30.769 0.00 0.00 42.68 2.32
242 243 9.832473 CCGTTTTAAATTTAAACTAAAACCACG 57.168 29.630 24.70 21.19 40.20 4.94
249 250 9.353431 ACTCCCTCCGTTTTAAATTTAAACTAA 57.647 29.630 20.35 6.23 34.20 2.24
250 251 8.922931 ACTCCCTCCGTTTTAAATTTAAACTA 57.077 30.769 20.35 6.88 34.20 2.24
251 252 7.828508 ACTCCCTCCGTTTTAAATTTAAACT 57.171 32.000 20.35 0.00 34.20 2.66
255 256 9.517868 TCAAATACTCCCTCCGTTTTAAATTTA 57.482 29.630 0.00 0.00 0.00 1.40
256 257 8.411991 TCAAATACTCCCTCCGTTTTAAATTT 57.588 30.769 0.00 0.00 0.00 1.82
257 258 8.589701 ATCAAATACTCCCTCCGTTTTAAATT 57.410 30.769 0.00 0.00 0.00 1.82
258 259 8.589701 AATCAAATACTCCCTCCGTTTTAAAT 57.410 30.769 0.00 0.00 0.00 1.40
259 260 8.301002 CAAATCAAATACTCCCTCCGTTTTAAA 58.699 33.333 0.00 0.00 0.00 1.52
260 261 7.576098 GCAAATCAAATACTCCCTCCGTTTTAA 60.576 37.037 0.00 0.00 0.00 1.52
261 262 6.127842 GCAAATCAAATACTCCCTCCGTTTTA 60.128 38.462 0.00 0.00 0.00 1.52
262 263 5.336451 GCAAATCAAATACTCCCTCCGTTTT 60.336 40.000 0.00 0.00 0.00 2.43
263 264 4.157840 GCAAATCAAATACTCCCTCCGTTT 59.842 41.667 0.00 0.00 0.00 3.60
264 265 3.694566 GCAAATCAAATACTCCCTCCGTT 59.305 43.478 0.00 0.00 0.00 4.44
265 266 3.054361 AGCAAATCAAATACTCCCTCCGT 60.054 43.478 0.00 0.00 0.00 4.69
266 267 3.313526 CAGCAAATCAAATACTCCCTCCG 59.686 47.826 0.00 0.00 0.00 4.63
267 268 3.067320 GCAGCAAATCAAATACTCCCTCC 59.933 47.826 0.00 0.00 0.00 4.30
268 269 3.950395 AGCAGCAAATCAAATACTCCCTC 59.050 43.478 0.00 0.00 0.00 4.30
269 270 3.973425 AGCAGCAAATCAAATACTCCCT 58.027 40.909 0.00 0.00 0.00 4.20
270 271 4.400567 AGAAGCAGCAAATCAAATACTCCC 59.599 41.667 0.00 0.00 0.00 4.30
271 272 5.573337 AGAAGCAGCAAATCAAATACTCC 57.427 39.130 0.00 0.00 0.00 3.85
272 273 9.578439 AAATAAGAAGCAGCAAATCAAATACTC 57.422 29.630 0.00 0.00 0.00 2.59
273 274 9.362539 CAAATAAGAAGCAGCAAATCAAATACT 57.637 29.630 0.00 0.00 0.00 2.12
274 275 9.357652 TCAAATAAGAAGCAGCAAATCAAATAC 57.642 29.630 0.00 0.00 0.00 1.89
331 332 5.061435 CAGTCACATCTCGACATAAACACAG 59.939 44.000 0.00 0.00 35.77 3.66
332 333 4.923281 CAGTCACATCTCGACATAAACACA 59.077 41.667 0.00 0.00 35.77 3.72
333 334 4.201628 GCAGTCACATCTCGACATAAACAC 60.202 45.833 0.00 0.00 35.77 3.32
334 335 3.926527 GCAGTCACATCTCGACATAAACA 59.073 43.478 0.00 0.00 35.77 2.83
335 336 3.926527 TGCAGTCACATCTCGACATAAAC 59.073 43.478 0.00 0.00 35.77 2.01
336 337 4.186856 TGCAGTCACATCTCGACATAAA 57.813 40.909 0.00 0.00 35.77 1.40
337 338 3.866883 TGCAGTCACATCTCGACATAA 57.133 42.857 0.00 0.00 35.77 1.90
338 339 3.866883 TTGCAGTCACATCTCGACATA 57.133 42.857 0.00 0.00 35.77 2.29
339 340 2.749280 TTGCAGTCACATCTCGACAT 57.251 45.000 0.00 0.00 35.77 3.06
340 341 2.289010 ACATTGCAGTCACATCTCGACA 60.289 45.455 0.00 0.00 35.77 4.35
341 342 2.093310 CACATTGCAGTCACATCTCGAC 59.907 50.000 0.00 0.00 0.00 4.20
342 343 2.340337 CACATTGCAGTCACATCTCGA 58.660 47.619 0.00 0.00 0.00 4.04
343 344 1.201998 GCACATTGCAGTCACATCTCG 60.202 52.381 0.00 0.00 44.26 4.04
344 345 2.539346 GCACATTGCAGTCACATCTC 57.461 50.000 0.00 0.00 44.26 2.75
355 356 0.947180 CCAAAGCTGTGGCACATTGC 60.947 55.000 22.35 21.32 44.52 3.56
356 357 0.390124 ACCAAAGCTGTGGCACATTG 59.610 50.000 23.74 21.11 44.52 2.82
357 358 1.122227 AACCAAAGCTGTGGCACATT 58.878 45.000 23.74 10.91 44.52 2.71
358 359 0.390124 CAACCAAAGCTGTGGCACAT 59.610 50.000 23.74 3.97 44.52 3.21
359 360 0.969917 ACAACCAAAGCTGTGGCACA 60.970 50.000 23.74 20.76 43.00 4.57
360 361 0.528249 CACAACCAAAGCTGTGGCAC 60.528 55.000 23.74 11.55 43.00 5.01
361 362 1.815196 CACAACCAAAGCTGTGGCA 59.185 52.632 23.74 0.00 43.00 4.92
362 363 1.592400 GCACAACCAAAGCTGTGGC 60.592 57.895 23.74 4.45 43.00 5.01
363 364 0.031178 GAGCACAACCAAAGCTGTGG 59.969 55.000 22.21 22.21 42.62 4.17
364 365 0.031178 GGAGCACAACCAAAGCTGTG 59.969 55.000 0.00 0.00 44.70 3.66
365 366 1.447317 CGGAGCACAACCAAAGCTGT 61.447 55.000 0.00 0.00 39.02 4.40
366 367 1.283793 CGGAGCACAACCAAAGCTG 59.716 57.895 0.00 0.00 39.02 4.24
367 368 1.898574 CCGGAGCACAACCAAAGCT 60.899 57.895 0.00 0.00 42.17 3.74
368 369 2.644992 CCGGAGCACAACCAAAGC 59.355 61.111 0.00 0.00 0.00 3.51
408 409 2.811317 CCAAGCCGAGTGAGCGAC 60.811 66.667 0.00 0.00 34.64 5.19
477 478 2.393271 AGGATTTCGTCTTCAGCCTG 57.607 50.000 0.00 0.00 0.00 4.85
489 490 2.937149 GCGGAGTGGAGTAAAGGATTTC 59.063 50.000 0.00 0.00 40.09 2.17
492 493 1.867363 AGCGGAGTGGAGTAAAGGAT 58.133 50.000 0.00 0.00 0.00 3.24
493 494 1.549170 GAAGCGGAGTGGAGTAAAGGA 59.451 52.381 0.00 0.00 0.00 3.36
495 496 2.611518 CTGAAGCGGAGTGGAGTAAAG 58.388 52.381 0.00 0.00 0.00 1.85
498 499 1.890894 GCTGAAGCGGAGTGGAGTA 59.109 57.895 0.00 0.00 0.00 2.59
584 592 0.534203 AGGCCGCGTCAAGAGAAAAA 60.534 50.000 4.92 0.00 0.00 1.94
585 593 0.949105 GAGGCCGCGTCAAGAGAAAA 60.949 55.000 4.92 0.00 0.00 2.29
586 594 1.374252 GAGGCCGCGTCAAGAGAAA 60.374 57.895 4.92 0.00 0.00 2.52
587 595 2.261671 GAGGCCGCGTCAAGAGAA 59.738 61.111 4.92 0.00 0.00 2.87
616 646 7.549147 TCTTCCTCTAACTTAGCCTTAACAA 57.451 36.000 0.00 0.00 0.00 2.83
617 647 6.351117 GCTCTTCCTCTAACTTAGCCTTAACA 60.351 42.308 0.00 0.00 0.00 2.41
627 657 5.567025 CGGTTAACAGCTCTTCCTCTAACTT 60.567 44.000 8.10 0.00 0.00 2.66
630 660 3.830755 ACGGTTAACAGCTCTTCCTCTAA 59.169 43.478 8.10 0.00 0.00 2.10
632 662 2.249139 ACGGTTAACAGCTCTTCCTCT 58.751 47.619 8.10 0.00 0.00 3.69
637 667 2.218603 CCACAACGGTTAACAGCTCTT 58.781 47.619 8.10 0.00 0.00 2.85
683 716 4.779696 TGCTATGGTATGAAGACATTGCA 58.220 39.130 8.47 8.47 45.83 4.08
758 805 2.766313 TCAAAACTGTGGGACGAGATG 58.234 47.619 0.00 0.00 0.00 2.90
766 813 2.168313 AGCTGGTTTTCAAAACTGTGGG 59.832 45.455 12.74 1.14 0.00 4.61
786 837 9.546909 CACTGTTATGTATTTTTGCAAGACTAG 57.453 33.333 0.00 0.00 0.00 2.57
879 991 8.379457 AGGACTATTTGTGAGACTTTGTTTAC 57.621 34.615 0.00 0.00 0.00 2.01
880 992 9.485206 GTAGGACTATTTGTGAGACTTTGTTTA 57.515 33.333 0.00 0.00 0.00 2.01
905 1019 5.346822 CAGTAATTAGTTAACGCGTCCTTGT 59.653 40.000 14.44 0.00 0.00 3.16
912 1026 4.488518 TTCGCAGTAATTAGTTAACGCG 57.511 40.909 3.53 3.53 40.91 6.01
946 1060 2.658325 CGACGACGGAATACTTCGTTTT 59.342 45.455 0.00 0.00 45.63 2.43
970 1084 2.008045 GCGTAACCGGTGCCTTTATCA 61.008 52.381 8.52 0.00 33.68 2.15
1114 1233 2.520741 GGAGAGGAGGGCGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1165 1289 3.849951 CCATGGAGACGGACGGGG 61.850 72.222 5.56 0.00 0.00 5.73
1166 1290 3.849951 CCCATGGAGACGGACGGG 61.850 72.222 15.22 0.00 0.00 5.28
1187 1311 2.483889 GGAGCTATACCTGTTGGACAGC 60.484 54.545 2.59 0.00 44.63 4.40
1272 1396 3.081804 AGGAACCAATCAATTCACCGAC 58.918 45.455 0.00 0.00 0.00 4.79
1449 1578 2.243602 AAACCTACACGGAAGCGAAA 57.756 45.000 0.00 0.00 36.31 3.46
1450 1579 1.868498 CAAAACCTACACGGAAGCGAA 59.132 47.619 0.00 0.00 36.31 4.70
1474 1603 7.748847 ACGTAAAGCTATCAATTAACAACCAG 58.251 34.615 0.00 0.00 0.00 4.00
1475 1604 7.675962 ACGTAAAGCTATCAATTAACAACCA 57.324 32.000 0.00 0.00 0.00 3.67
1492 1622 8.346476 TCAATTCATTGTTCCAAAACGTAAAG 57.654 30.769 0.00 0.00 38.28 1.85
1553 1685 6.681777 AGATGTAATTTCCAACAAGAACTGC 58.318 36.000 0.00 0.00 0.00 4.40
1563 1695 6.920758 CCAAACGACAAAGATGTAATTTCCAA 59.079 34.615 0.00 0.00 40.74 3.53
1699 2106 2.550208 CCCGTTGAAACTAGAGTGGCTT 60.550 50.000 0.00 0.00 0.00 4.35
1740 2147 8.018537 AGTAAACATATGCTATACACAGGACA 57.981 34.615 1.58 0.00 0.00 4.02
1741 2148 8.888579 AAGTAAACATATGCTATACACAGGAC 57.111 34.615 1.58 0.00 0.00 3.85
1743 2150 9.982651 ACTAAGTAAACATATGCTATACACAGG 57.017 33.333 1.58 0.19 0.00 4.00
1770 2177 1.460504 AGCGAACAGAGGACGTATGA 58.539 50.000 0.00 0.00 0.00 2.15
1777 2184 5.127194 ACATCTTGTAATAGCGAACAGAGGA 59.873 40.000 0.00 0.00 0.00 3.71
1787 2194 9.937175 GAAGTATCCAAAACATCTTGTAATAGC 57.063 33.333 0.00 0.00 0.00 2.97
1794 2201 9.740239 CCATATTGAAGTATCCAAAACATCTTG 57.260 33.333 0.00 0.00 0.00 3.02
1804 2211 9.374711 TGTACATAGTCCATATTGAAGTATCCA 57.625 33.333 0.00 0.00 0.00 3.41
1810 2217 8.633561 TCAGTCTGTACATAGTCCATATTGAAG 58.366 37.037 0.00 0.00 0.00 3.02
1815 2222 9.147732 TCATTTCAGTCTGTACATAGTCCATAT 57.852 33.333 0.00 0.00 0.00 1.78
1817 2224 7.124901 ACTCATTTCAGTCTGTACATAGTCCAT 59.875 37.037 0.00 0.00 0.00 3.41
1823 2230 9.990360 TTGTTTACTCATTTCAGTCTGTACATA 57.010 29.630 0.00 0.00 0.00 2.29
1825 2232 8.725405 TTTGTTTACTCATTTCAGTCTGTACA 57.275 30.769 0.00 0.00 0.00 2.90
1829 2236 9.599322 GTGTATTTGTTTACTCATTTCAGTCTG 57.401 33.333 0.00 0.00 0.00 3.51
1830 2237 9.561069 AGTGTATTTGTTTACTCATTTCAGTCT 57.439 29.630 0.00 0.00 0.00 3.24
1892 2299 9.976511 CCCGTTCACTATTATAAGATGTTCTAA 57.023 33.333 0.00 0.00 0.00 2.10
1918 2325 3.373987 GCCCCCTCTATATAGTACTCCCC 60.374 56.522 9.58 0.00 0.00 4.81
1925 2332 5.029973 AGTTGATGCCCCCTCTATATAGT 57.970 43.478 9.58 0.00 0.00 2.12
1981 2389 8.786826 ATCATCTGTTTTTGCAATTTCATCAT 57.213 26.923 0.00 0.00 0.00 2.45
2013 2422 1.079503 CAGAGGTTTTCGCTACAGCC 58.920 55.000 0.00 0.00 37.91 4.85
2047 2456 8.910666 TGTTCTGACAAATACGCAAATAATTTG 58.089 29.630 5.67 5.67 43.18 2.32
2058 2467 6.291637 CGCCTATTAGTGTTCTGACAAATACG 60.292 42.308 0.00 0.00 37.57 3.06
2074 2484 3.786635 ACAAGAGTGAAGCGCCTATTAG 58.213 45.455 2.29 0.00 0.00 1.73
2082 2492 2.802816 ACAAAGCTACAAGAGTGAAGCG 59.197 45.455 0.00 0.00 39.94 4.68
2187 2597 1.410004 TGACAGTTCCTGTTCCGACT 58.590 50.000 0.00 0.00 45.44 4.18
2202 2612 6.263842 AGCTCACAAGAAGAAAATCAATGACA 59.736 34.615 0.00 0.00 0.00 3.58
2226 2636 1.346068 GTGCTCCTATTAGGGCCAGAG 59.654 57.143 6.18 2.85 35.59 3.35
2237 2647 0.107017 GCATGGTGTGGTGCTCCTAT 60.107 55.000 6.34 0.00 38.30 2.57
2250 2660 2.715749 TGCTGCATACTAAGCATGGT 57.284 45.000 0.00 0.00 44.26 3.55
2259 2669 1.649664 CTTCTTCGCTGCTGCATACT 58.350 50.000 16.29 0.00 39.64 2.12
2310 2720 0.767375 AACAGCTGAGGCAAGAGGAA 59.233 50.000 23.35 0.00 41.70 3.36
2352 2762 3.228749 GTTGACGTCATACTCGAAACGA 58.771 45.455 20.80 0.00 38.44 3.85
2382 2792 0.239347 CTCGCACTTTGGCAAGGAAG 59.761 55.000 16.87 6.10 33.82 3.46
2435 2845 2.737376 GTCGGACAACCACCTCGC 60.737 66.667 2.62 0.00 35.59 5.03
2607 3017 3.573229 ACAGCAGCAAGAGGGCCA 61.573 61.111 6.18 0.00 0.00 5.36
2631 3041 1.280133 GTTACTAGGCGGAAAGGGGTT 59.720 52.381 0.00 0.00 0.00 4.11
2655 3065 3.264193 TCACTGCCACTCCATAGATGTTT 59.736 43.478 0.00 0.00 0.00 2.83
2673 3083 1.075482 CACCCCAACAGCCATCACT 59.925 57.895 0.00 0.00 0.00 3.41
2685 3095 1.051556 TGCTGACACAGTACACCCCA 61.052 55.000 0.00 0.00 33.43 4.96
2746 3156 0.610687 GTCAGGTCCTCCACTTCCAG 59.389 60.000 0.00 0.00 35.89 3.86
2837 3247 2.357517 GTGTGGTCACTGCCGGAG 60.358 66.667 5.05 1.84 40.98 4.63
2874 3284 7.112122 TCTCCATATTTTACAACATCAGTGCT 58.888 34.615 0.00 0.00 0.00 4.40
2938 3348 8.135529 AGTTTTAGCAGGTTTGAACAACTATTC 58.864 33.333 0.00 0.00 0.00 1.75
2942 3352 5.185056 ACAGTTTTAGCAGGTTTGAACAACT 59.815 36.000 0.00 0.00 0.00 3.16
3102 3515 4.892934 AGCCAGAAATAGACAGGAGTAGAG 59.107 45.833 0.00 0.00 0.00 2.43
3106 3519 4.100373 AGAAGCCAGAAATAGACAGGAGT 58.900 43.478 0.00 0.00 0.00 3.85
3129 3542 3.380320 ACGTTTCCCCAAGAAGTGAAAAG 59.620 43.478 0.00 0.00 35.40 2.27
3211 3624 7.075741 CCTTCTGTTTCAGTTTATTTGTACCG 58.924 38.462 0.00 0.00 32.61 4.02
3221 3634 8.581578 TGTTTCTTAAACCTTCTGTTTCAGTTT 58.418 29.630 0.41 0.00 43.74 2.66
3232 3645 9.366216 ACAAGAAAATGTGTTTCTTAAACCTTC 57.634 29.630 12.39 0.00 44.30 3.46
3233 3646 9.150348 CACAAGAAAATGTGTTTCTTAAACCTT 57.850 29.630 12.39 0.00 44.30 3.50
3269 3682 4.545610 CAATGTATGACGTTTTGGCAGTT 58.454 39.130 0.00 0.00 0.00 3.16
3284 3697 9.672673 AACTAATCACTCTGTAAAGCAATGTAT 57.327 29.630 0.00 0.00 0.00 2.29
3328 3741 2.832129 TGTTAGGTAGACTTGCCCTCAG 59.168 50.000 0.00 0.00 0.00 3.35
3333 3746 6.430000 TCTTCAAATTGTTAGGTAGACTTGCC 59.570 38.462 0.00 0.00 0.00 4.52
3545 4013 3.491342 AGGAGGCAAAAGGAAAGAGAAC 58.509 45.455 0.00 0.00 0.00 3.01
3562 4030 2.486907 GGCCAAATCCATGAGAGAGGAG 60.487 54.545 0.00 0.00 37.34 3.69
3563 4031 1.492176 GGCCAAATCCATGAGAGAGGA 59.508 52.381 0.00 0.00 38.50 3.71
3564 4032 1.478288 GGGCCAAATCCATGAGAGAGG 60.478 57.143 4.39 0.00 0.00 3.69
3565 4033 1.478288 GGGGCCAAATCCATGAGAGAG 60.478 57.143 4.39 0.00 0.00 3.20
3566 4034 0.552848 GGGGCCAAATCCATGAGAGA 59.447 55.000 4.39 0.00 0.00 3.10
3567 4035 0.554792 AGGGGCCAAATCCATGAGAG 59.445 55.000 4.39 0.00 0.00 3.20
3568 4036 0.552848 GAGGGGCCAAATCCATGAGA 59.447 55.000 4.39 0.00 0.00 3.27
3569 4037 0.554792 AGAGGGGCCAAATCCATGAG 59.445 55.000 4.39 0.00 0.00 2.90
3570 4038 0.552848 GAGAGGGGCCAAATCCATGA 59.447 55.000 4.39 0.00 0.00 3.07
3571 4039 0.554792 AGAGAGGGGCCAAATCCATG 59.445 55.000 4.39 0.00 0.00 3.66
3572 4040 0.849417 GAGAGAGGGGCCAAATCCAT 59.151 55.000 4.39 0.00 0.00 3.41
3573 4041 0.253347 AGAGAGAGGGGCCAAATCCA 60.253 55.000 4.39 0.00 0.00 3.41
3574 4042 0.472044 GAGAGAGAGGGGCCAAATCC 59.528 60.000 4.39 0.00 0.00 3.01
3575 4043 1.416030 GAGAGAGAGAGGGGCCAAATC 59.584 57.143 4.39 0.00 0.00 2.17
3576 4044 1.009429 AGAGAGAGAGAGGGGCCAAAT 59.991 52.381 4.39 0.00 0.00 2.32
3577 4045 0.415429 AGAGAGAGAGAGGGGCCAAA 59.585 55.000 4.39 0.00 0.00 3.28
3578 4046 0.032615 GAGAGAGAGAGAGGGGCCAA 60.033 60.000 4.39 0.00 0.00 4.52
3579 4047 0.923729 AGAGAGAGAGAGAGGGGCCA 60.924 60.000 4.39 0.00 0.00 5.36
3580 4048 0.178990 GAGAGAGAGAGAGAGGGGCC 60.179 65.000 0.00 0.00 0.00 5.80
3581 4049 0.550914 TGAGAGAGAGAGAGAGGGGC 59.449 60.000 0.00 0.00 0.00 5.80
3582 4050 3.117550 TCAATGAGAGAGAGAGAGAGGGG 60.118 52.174 0.00 0.00 0.00 4.79
3583 4051 4.169059 TCAATGAGAGAGAGAGAGAGGG 57.831 50.000 0.00 0.00 0.00 4.30
3584 4052 6.720112 AAATCAATGAGAGAGAGAGAGAGG 57.280 41.667 0.00 0.00 0.00 3.69
3585 4053 6.914215 CGAAAATCAATGAGAGAGAGAGAGAG 59.086 42.308 0.00 0.00 0.00 3.20
3586 4054 6.183360 CCGAAAATCAATGAGAGAGAGAGAGA 60.183 42.308 0.00 0.00 0.00 3.10
3587 4055 5.978919 CCGAAAATCAATGAGAGAGAGAGAG 59.021 44.000 0.00 0.00 0.00 3.20
3588 4056 5.654209 TCCGAAAATCAATGAGAGAGAGAGA 59.346 40.000 0.00 0.00 0.00 3.10
3589 4057 5.900425 TCCGAAAATCAATGAGAGAGAGAG 58.100 41.667 0.00 0.00 0.00 3.20
3590 4058 5.420421 ACTCCGAAAATCAATGAGAGAGAGA 59.580 40.000 2.57 0.00 0.00 3.10
3591 4059 5.659463 ACTCCGAAAATCAATGAGAGAGAG 58.341 41.667 2.57 0.58 0.00 3.20
3592 4060 5.667539 ACTCCGAAAATCAATGAGAGAGA 57.332 39.130 2.57 0.00 0.00 3.10
3593 4061 5.871524 TCAACTCCGAAAATCAATGAGAGAG 59.128 40.000 2.57 0.00 0.00 3.20
3594 4062 5.639506 GTCAACTCCGAAAATCAATGAGAGA 59.360 40.000 2.57 0.00 0.00 3.10
3595 4063 5.409520 TGTCAACTCCGAAAATCAATGAGAG 59.590 40.000 0.00 0.00 0.00 3.20
3596 4064 5.304778 TGTCAACTCCGAAAATCAATGAGA 58.695 37.500 0.00 0.00 0.00 3.27
3597 4065 5.611796 TGTCAACTCCGAAAATCAATGAG 57.388 39.130 0.00 0.00 0.00 2.90
3598 4066 7.390440 ACTTATGTCAACTCCGAAAATCAATGA 59.610 33.333 0.00 0.00 0.00 2.57
3599 4067 7.530010 ACTTATGTCAACTCCGAAAATCAATG 58.470 34.615 0.00 0.00 0.00 2.82
3600 4068 7.687941 ACTTATGTCAACTCCGAAAATCAAT 57.312 32.000 0.00 0.00 0.00 2.57
3601 4069 8.786826 ATACTTATGTCAACTCCGAAAATCAA 57.213 30.769 0.00 0.00 0.00 2.57
3602 4070 8.786826 AATACTTATGTCAACTCCGAAAATCA 57.213 30.769 0.00 0.00 0.00 2.57
3603 4071 9.490663 CAAATACTTATGTCAACTCCGAAAATC 57.509 33.333 0.00 0.00 0.00 2.17
3604 4072 9.226606 TCAAATACTTATGTCAACTCCGAAAAT 57.773 29.630 0.00 0.00 0.00 1.82
3605 4073 8.610248 TCAAATACTTATGTCAACTCCGAAAA 57.390 30.769 0.00 0.00 0.00 2.29
3606 4074 8.786826 ATCAAATACTTATGTCAACTCCGAAA 57.213 30.769 0.00 0.00 0.00 3.46
3607 4075 8.786826 AATCAAATACTTATGTCAACTCCGAA 57.213 30.769 0.00 0.00 0.00 4.30
3608 4076 8.786826 AAATCAAATACTTATGTCAACTCCGA 57.213 30.769 0.00 0.00 0.00 4.55
3609 4077 9.840427 AAAAATCAAATACTTATGTCAACTCCG 57.160 29.630 0.00 0.00 0.00 4.63
3621 4089 9.942850 CAACCCCTAATGAAAAATCAAATACTT 57.057 29.630 0.00 0.00 0.00 2.24
3622 4090 9.320295 TCAACCCCTAATGAAAAATCAAATACT 57.680 29.630 0.00 0.00 0.00 2.12
3623 4091 9.936759 TTCAACCCCTAATGAAAAATCAAATAC 57.063 29.630 0.00 0.00 32.89 1.89
3624 4092 9.936759 GTTCAACCCCTAATGAAAAATCAAATA 57.063 29.630 0.00 0.00 37.31 1.40
3625 4093 7.882791 GGTTCAACCCCTAATGAAAAATCAAAT 59.117 33.333 0.00 0.00 37.31 2.32
3626 4094 7.147479 TGGTTCAACCCCTAATGAAAAATCAAA 60.147 33.333 3.42 0.00 37.50 2.69
3627 4095 6.327626 TGGTTCAACCCCTAATGAAAAATCAA 59.672 34.615 3.42 0.00 37.50 2.57
3628 4096 5.841237 TGGTTCAACCCCTAATGAAAAATCA 59.159 36.000 3.42 0.00 37.50 2.57
3629 4097 6.353404 TGGTTCAACCCCTAATGAAAAATC 57.647 37.500 3.42 0.00 37.50 2.17
3630 4098 6.744056 GCTTGGTTCAACCCCTAATGAAAAAT 60.744 38.462 3.42 0.00 37.50 1.82
3631 4099 5.454045 GCTTGGTTCAACCCCTAATGAAAAA 60.454 40.000 3.42 0.00 37.50 1.94
3632 4100 4.039852 GCTTGGTTCAACCCCTAATGAAAA 59.960 41.667 3.42 0.00 37.50 2.29
3633 4101 3.576550 GCTTGGTTCAACCCCTAATGAAA 59.423 43.478 3.42 0.00 37.50 2.69
3634 4102 3.161866 GCTTGGTTCAACCCCTAATGAA 58.838 45.455 3.42 0.00 37.50 2.57
3635 4103 2.378547 AGCTTGGTTCAACCCCTAATGA 59.621 45.455 3.42 0.00 37.50 2.57
3636 4104 2.807676 AGCTTGGTTCAACCCCTAATG 58.192 47.619 3.42 0.00 37.50 1.90
3637 4105 3.542969 AAGCTTGGTTCAACCCCTAAT 57.457 42.857 3.42 0.00 37.50 1.73
3638 4106 3.322191 AAAGCTTGGTTCAACCCCTAA 57.678 42.857 3.42 0.00 37.50 2.69
3639 4107 4.668138 ATAAAGCTTGGTTCAACCCCTA 57.332 40.909 3.42 0.00 37.50 3.53
3640 4108 3.542969 ATAAAGCTTGGTTCAACCCCT 57.457 42.857 3.42 0.00 37.50 4.79
3641 4109 4.770531 AGTAATAAAGCTTGGTTCAACCCC 59.229 41.667 3.42 0.00 37.50 4.95
3642 4110 5.391629 CGAGTAATAAAGCTTGGTTCAACCC 60.392 44.000 3.42 0.00 37.50 4.11
3643 4111 5.410439 TCGAGTAATAAAGCTTGGTTCAACC 59.590 40.000 0.00 0.00 39.22 3.77
3644 4112 6.476243 TCGAGTAATAAAGCTTGGTTCAAC 57.524 37.500 0.00 0.00 0.00 3.18
3645 4113 6.708949 ACTTCGAGTAATAAAGCTTGGTTCAA 59.291 34.615 0.00 0.00 0.00 2.69
3646 4114 6.228258 ACTTCGAGTAATAAAGCTTGGTTCA 58.772 36.000 0.00 0.00 0.00 3.18
3647 4115 6.183360 GGACTTCGAGTAATAAAGCTTGGTTC 60.183 42.308 0.00 0.00 0.00 3.62
3648 4116 5.642491 GGACTTCGAGTAATAAAGCTTGGTT 59.358 40.000 0.00 0.30 0.00 3.67
3649 4117 5.176592 GGACTTCGAGTAATAAAGCTTGGT 58.823 41.667 0.00 0.00 0.00 3.67
3650 4118 5.063564 GTGGACTTCGAGTAATAAAGCTTGG 59.936 44.000 0.00 0.00 0.00 3.61
3651 4119 5.637810 TGTGGACTTCGAGTAATAAAGCTTG 59.362 40.000 0.00 0.00 0.00 4.01
3652 4120 5.790593 TGTGGACTTCGAGTAATAAAGCTT 58.209 37.500 0.00 0.00 0.00 3.74
3653 4121 5.401531 TGTGGACTTCGAGTAATAAAGCT 57.598 39.130 0.00 0.00 0.00 3.74
3654 4122 5.006746 CCATGTGGACTTCGAGTAATAAAGC 59.993 44.000 0.00 0.00 37.39 3.51
3655 4123 6.036083 CACCATGTGGACTTCGAGTAATAAAG 59.964 42.308 5.96 0.00 38.94 1.85
3656 4124 5.872617 CACCATGTGGACTTCGAGTAATAAA 59.127 40.000 5.96 0.00 38.94 1.40
3657 4125 5.046878 ACACCATGTGGACTTCGAGTAATAA 60.047 40.000 5.96 0.00 37.94 1.40
3658 4126 4.464951 ACACCATGTGGACTTCGAGTAATA 59.535 41.667 5.96 0.00 37.94 0.98
3659 4127 3.260884 ACACCATGTGGACTTCGAGTAAT 59.739 43.478 5.96 0.00 37.94 1.89
3660 4128 2.631062 ACACCATGTGGACTTCGAGTAA 59.369 45.455 5.96 0.00 37.94 2.24
3661 4129 2.029380 CACACCATGTGGACTTCGAGTA 60.029 50.000 5.96 0.00 44.27 2.59
3662 4130 1.048601 ACACCATGTGGACTTCGAGT 58.951 50.000 5.96 0.00 37.94 4.18
3663 4131 1.432514 CACACCATGTGGACTTCGAG 58.567 55.000 5.96 0.00 44.27 4.04
3664 4132 3.605013 CACACCATGTGGACTTCGA 57.395 52.632 5.96 0.00 44.27 3.71
3673 4141 3.494749 CCTTTTTGCATTCCACACCATGT 60.495 43.478 0.00 0.00 0.00 3.21
3674 4142 3.068560 CCTTTTTGCATTCCACACCATG 58.931 45.455 0.00 0.00 0.00 3.66
3675 4143 2.971330 TCCTTTTTGCATTCCACACCAT 59.029 40.909 0.00 0.00 0.00 3.55
3676 4144 2.392662 TCCTTTTTGCATTCCACACCA 58.607 42.857 0.00 0.00 0.00 4.17
3677 4145 3.006752 TGATCCTTTTTGCATTCCACACC 59.993 43.478 0.00 0.00 0.00 4.16
3678 4146 4.255833 TGATCCTTTTTGCATTCCACAC 57.744 40.909 0.00 0.00 0.00 3.82
3679 4147 4.322877 CCATGATCCTTTTTGCATTCCACA 60.323 41.667 0.00 0.00 0.00 4.17
3680 4148 4.186159 CCATGATCCTTTTTGCATTCCAC 58.814 43.478 0.00 0.00 0.00 4.02
3681 4149 3.198200 CCCATGATCCTTTTTGCATTCCA 59.802 43.478 0.00 0.00 0.00 3.53
3682 4150 3.432608 CCCCATGATCCTTTTTGCATTCC 60.433 47.826 0.00 0.00 0.00 3.01
3683 4151 3.198417 ACCCCATGATCCTTTTTGCATTC 59.802 43.478 0.00 0.00 0.00 2.67
3684 4152 3.183801 ACCCCATGATCCTTTTTGCATT 58.816 40.909 0.00 0.00 0.00 3.56
3685 4153 2.836667 ACCCCATGATCCTTTTTGCAT 58.163 42.857 0.00 0.00 0.00 3.96
3686 4154 2.302445 CAACCCCATGATCCTTTTTGCA 59.698 45.455 0.00 0.00 0.00 4.08
3687 4155 2.355007 CCAACCCCATGATCCTTTTTGC 60.355 50.000 0.00 0.00 0.00 3.68
3688 4156 2.905736 ACCAACCCCATGATCCTTTTTG 59.094 45.455 0.00 0.00 0.00 2.44
3689 4157 3.173151 GACCAACCCCATGATCCTTTTT 58.827 45.455 0.00 0.00 0.00 1.94
3690 4158 2.383338 AGACCAACCCCATGATCCTTTT 59.617 45.455 0.00 0.00 0.00 2.27
3691 4159 2.003072 AGACCAACCCCATGATCCTTT 58.997 47.619 0.00 0.00 0.00 3.11
3692 4160 1.686236 AGACCAACCCCATGATCCTT 58.314 50.000 0.00 0.00 0.00 3.36
3693 4161 2.509964 GTTAGACCAACCCCATGATCCT 59.490 50.000 0.00 0.00 0.00 3.24
3694 4162 2.932261 GTTAGACCAACCCCATGATCC 58.068 52.381 0.00 0.00 0.00 3.36
3707 4175 1.819632 CGCCATGCCTGGTTAGACC 60.820 63.158 9.95 0.00 45.10 3.85
3708 4176 2.472909 GCGCCATGCCTGGTTAGAC 61.473 63.158 9.95 0.00 45.10 2.59
3709 4177 2.124736 GCGCCATGCCTGGTTAGA 60.125 61.111 9.95 0.00 45.10 2.10
3719 4187 4.738998 TTGACCAGGGGCGCCATG 62.739 66.667 30.85 25.10 34.81 3.66
3720 4188 4.431131 CTTGACCAGGGGCGCCAT 62.431 66.667 30.85 14.02 0.00 4.40
3722 4190 4.785453 CTCTTGACCAGGGGCGCC 62.785 72.222 21.18 21.18 0.00 6.53
3723 4191 2.543067 ATTCTCTTGACCAGGGGCGC 62.543 60.000 0.00 0.00 0.00 6.53
3724 4192 0.745845 CATTCTCTTGACCAGGGGCG 60.746 60.000 0.00 0.00 0.00 6.13
3725 4193 0.329596 ACATTCTCTTGACCAGGGGC 59.670 55.000 0.00 0.00 0.00 5.80
3726 4194 1.952367 GCACATTCTCTTGACCAGGGG 60.952 57.143 0.00 0.00 0.00 4.79
3727 4195 1.004044 AGCACATTCTCTTGACCAGGG 59.996 52.381 0.00 0.00 0.00 4.45
3728 4196 2.486472 AGCACATTCTCTTGACCAGG 57.514 50.000 0.00 0.00 0.00 4.45
3729 4197 3.144506 ACAAGCACATTCTCTTGACCAG 58.855 45.455 8.72 0.00 41.50 4.00
3730 4198 3.141398 GACAAGCACATTCTCTTGACCA 58.859 45.455 8.72 0.00 41.50 4.02
3731 4199 2.158449 CGACAAGCACATTCTCTTGACC 59.842 50.000 8.72 0.73 41.50 4.02
3732 4200 3.059884 TCGACAAGCACATTCTCTTGAC 58.940 45.455 8.72 2.40 41.50 3.18
3733 4201 3.320626 CTCGACAAGCACATTCTCTTGA 58.679 45.455 8.72 0.00 41.50 3.02
3734 4202 3.719083 CTCGACAAGCACATTCTCTTG 57.281 47.619 0.00 0.00 43.79 3.02
3746 4214 0.737367 TCATGAAGCGGCTCGACAAG 60.737 55.000 1.45 2.05 0.00 3.16
3747 4215 0.320334 TTCATGAAGCGGCTCGACAA 60.320 50.000 3.38 0.00 0.00 3.18
3748 4216 0.108186 ATTCATGAAGCGGCTCGACA 60.108 50.000 14.54 4.94 0.00 4.35
3749 4217 1.009829 AATTCATGAAGCGGCTCGAC 58.990 50.000 14.54 0.00 0.00 4.20
3750 4218 1.398041 CAAATTCATGAAGCGGCTCGA 59.602 47.619 14.54 0.00 0.00 4.04
3751 4219 1.131126 ACAAATTCATGAAGCGGCTCG 59.869 47.619 14.54 0.94 0.00 5.03
3752 4220 2.927553 ACAAATTCATGAAGCGGCTC 57.072 45.000 14.54 0.00 0.00 4.70
3753 4221 3.005684 TGAAACAAATTCATGAAGCGGCT 59.994 39.130 14.54 0.00 43.08 5.52
3754 4222 3.316283 TGAAACAAATTCATGAAGCGGC 58.684 40.909 14.54 0.00 43.08 6.53
3768 4236 7.213678 AGTGAACCTTTTCTTTGTTGAAACAA 58.786 30.769 4.52 4.52 46.35 2.83
3769 4237 6.754193 AGTGAACCTTTTCTTTGTTGAAACA 58.246 32.000 0.00 0.00 35.91 2.83
3770 4238 7.652300 AAGTGAACCTTTTCTTTGTTGAAAC 57.348 32.000 0.00 0.00 35.91 2.78
3771 4239 9.936759 AATAAGTGAACCTTTTCTTTGTTGAAA 57.063 25.926 0.00 0.00 34.46 2.69
3772 4240 9.581099 GAATAAGTGAACCTTTTCTTTGTTGAA 57.419 29.630 0.00 0.00 34.46 2.69
3773 4241 8.744652 TGAATAAGTGAACCTTTTCTTTGTTGA 58.255 29.630 0.00 0.00 34.46 3.18
3774 4242 8.925161 TGAATAAGTGAACCTTTTCTTTGTTG 57.075 30.769 0.00 0.00 34.46 3.33
3775 4243 9.936759 TTTGAATAAGTGAACCTTTTCTTTGTT 57.063 25.926 0.00 0.00 34.46 2.83
3776 4244 9.936759 TTTTGAATAAGTGAACCTTTTCTTTGT 57.063 25.926 0.00 0.00 34.46 2.83
3822 4290 9.717892 GAACTTTTTCTCGAATTAGTGAACTTT 57.282 29.630 3.01 0.00 0.00 2.66
3823 4291 8.889717 TGAACTTTTTCTCGAATTAGTGAACTT 58.110 29.630 3.01 0.00 32.36 2.66
3824 4292 8.433421 TGAACTTTTTCTCGAATTAGTGAACT 57.567 30.769 3.01 0.00 32.36 3.01
3941 4409 9.617523 ATCCTGAACTTTTTCAAAATGTTCATT 57.382 25.926 30.04 20.48 41.34 2.57
4053 4521 9.533253 ACTTTCATGAAAATCGATGAACTTTTT 57.467 25.926 20.82 0.00 38.11 1.94
4054 4522 9.533253 AACTTTCATGAAAATCGATGAACTTTT 57.467 25.926 20.82 0.00 38.11 2.27
4055 4523 8.971321 CAACTTTCATGAAAATCGATGAACTTT 58.029 29.630 20.82 0.00 38.11 2.66
4056 4524 8.352201 TCAACTTTCATGAAAATCGATGAACTT 58.648 29.630 20.82 0.00 38.11 2.66
4057 4525 7.805071 GTCAACTTTCATGAAAATCGATGAACT 59.195 33.333 20.82 0.00 38.11 3.01
4058 4526 7.201182 CGTCAACTTTCATGAAAATCGATGAAC 60.201 37.037 20.82 12.44 38.11 3.18
4059 4527 6.796552 CGTCAACTTTCATGAAAATCGATGAA 59.203 34.615 20.82 0.00 36.91 2.57
4060 4528 6.147000 TCGTCAACTTTCATGAAAATCGATGA 59.853 34.615 20.82 20.68 0.00 2.92
4061 4529 6.306397 TCGTCAACTTTCATGAAAATCGATG 58.694 36.000 20.82 19.14 0.00 3.84
4062 4530 6.480524 TCGTCAACTTTCATGAAAATCGAT 57.519 33.333 20.82 2.97 0.00 3.59
4063 4531 5.915812 TCGTCAACTTTCATGAAAATCGA 57.084 34.783 20.82 19.69 0.00 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.