Multiple sequence alignment - TraesCS1D01G274500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G274500 chr1D 100.000 2835 0 0 1 2835 370131605 370128771 0.000000e+00 5236.0
1 TraesCS1D01G274500 chr1D 92.593 405 29 1 2432 2835 27959159 27958755 5.260000e-162 580.0
2 TraesCS1D01G274500 chr1D 92.118 406 30 2 2432 2835 475962599 475962194 3.170000e-159 571.0
3 TraesCS1D01G274500 chr1D 80.184 217 35 5 1826 2035 388608511 388608296 3.780000e-34 156.0
4 TraesCS1D01G274500 chr1D 86.598 97 13 0 556 652 114048849 114048753 1.070000e-19 108.0
5 TraesCS1D01G274500 chr1D 85.897 78 8 2 1944 2021 274943209 274943135 2.340000e-11 80.5
6 TraesCS1D01G274500 chr1A 91.267 1168 55 12 667 1818 468685456 468684320 0.000000e+00 1548.0
7 TraesCS1D01G274500 chr1A 93.052 403 27 1 2432 2833 430206867 430207269 3.150000e-164 588.0
8 TraesCS1D01G274500 chr1A 92.804 403 28 1 2432 2833 430213457 430213859 1.460000e-162 582.0
9 TraesCS1D01G274500 chr1A 93.923 362 16 3 1 358 468686313 468685954 2.480000e-150 542.0
10 TraesCS1D01G274500 chr1A 82.075 212 31 6 1825 2030 73129869 73130079 1.040000e-39 174.0
11 TraesCS1D01G274500 chr1A 84.574 188 16 8 362 548 468685828 468685653 1.040000e-39 174.0
12 TraesCS1D01G274500 chr1A 84.466 103 16 0 554 656 517086420 517086318 5.000000e-18 102.0
13 TraesCS1D01G274500 chr1A 88.732 71 7 1 554 623 547211880 547211810 5.030000e-13 86.1
14 TraesCS1D01G274500 chr1A 90.164 61 6 0 563 623 547233798 547233738 2.340000e-11 80.5
15 TraesCS1D01G274500 chr5A 88.608 790 65 11 2062 2832 514275122 514275905 0.000000e+00 937.0
16 TraesCS1D01G274500 chr5A 92.593 405 29 1 2432 2835 527851717 527852121 5.260000e-162 580.0
17 TraesCS1D01G274500 chr5A 84.049 163 22 2 1881 2039 525115693 525115531 1.360000e-33 154.0
18 TraesCS1D01G274500 chr5A 82.979 94 16 0 557 650 419248793 419248700 5.030000e-13 86.1
19 TraesCS1D01G274500 chr2A 88.859 745 57 13 2108 2835 42178681 42179416 0.000000e+00 893.0
20 TraesCS1D01G274500 chr2A 81.982 222 29 8 1822 2035 706325546 706325764 8.070000e-41 178.0
21 TraesCS1D01G274500 chr2A 80.000 180 30 5 1833 2007 712986340 712986162 8.240000e-26 128.0
22 TraesCS1D01G274500 chr2A 81.081 111 18 3 1429 1537 704005199 704005308 5.030000e-13 86.1
23 TraesCS1D01G274500 chr1B 83.585 926 99 33 839 1718 492866386 492865468 0.000000e+00 819.0
24 TraesCS1D01G274500 chr1B 85.000 80 12 0 571 650 22661218 22661139 6.510000e-12 82.4
25 TraesCS1D01G274500 chr2D 92.593 405 29 1 2432 2835 432024152 432023748 5.260000e-162 580.0
26 TraesCS1D01G274500 chr2D 80.734 109 18 3 1431 1537 563958859 563958966 6.510000e-12 82.4
27 TraesCS1D01G274500 chr7A 92.537 402 30 0 2434 2835 28369451 28369852 6.810000e-161 577.0
28 TraesCS1D01G274500 chr7A 92.992 371 20 5 2060 2426 32132809 32132441 1.160000e-148 536.0
29 TraesCS1D01G274500 chr7A 88.350 103 12 0 554 656 641044280 641044382 1.070000e-24 124.0
30 TraesCS1D01G274500 chr6D 92.099 405 31 1 2432 2835 157649752 157649348 1.140000e-158 569.0
31 TraesCS1D01G274500 chr6D 80.717 223 34 6 1818 2033 68573787 68573567 6.280000e-37 165.0
32 TraesCS1D01G274500 chr6D 81.373 102 19 0 1431 1532 344300146 344300045 1.810000e-12 84.2
33 TraesCS1D01G274500 chr5D 92.727 385 14 3 2060 2431 59932295 59931912 6.910000e-151 544.0
34 TraesCS1D01G274500 chr5D 81.522 92 15 2 566 656 38980347 38980437 1.090000e-09 75.0
35 TraesCS1D01G274500 chr3D 92.632 380 22 4 2060 2433 439820468 439820089 2.480000e-150 542.0
36 TraesCS1D01G274500 chr3D 92.593 378 22 4 2060 2431 180831611 180831234 3.210000e-149 538.0
37 TraesCS1D01G274500 chr6A 93.011 372 22 3 2060 2431 52800726 52800359 8.940000e-150 540.0
38 TraesCS1D01G274500 chr6A 80.973 226 32 8 1818 2035 86301225 86301003 4.860000e-38 169.0
39 TraesCS1D01G274500 chr6A 80.734 109 20 1 1424 1532 484848280 484848173 1.810000e-12 84.2
40 TraesCS1D01G274500 chr6B 92.593 378 22 4 2060 2431 515073754 515073377 3.210000e-149 538.0
41 TraesCS1D01G274500 chr6B 82.979 188 27 2 1852 2035 676284096 676283910 6.280000e-37 165.0
42 TraesCS1D01G274500 chr6B 78.289 152 30 1 1858 2009 529771745 529771597 8.360000e-16 95.3
43 TraesCS1D01G274500 chr6B 76.471 153 30 6 1431 1580 519813899 519813750 8.420000e-11 78.7
44 TraesCS1D01G274500 chrUn 92.573 377 22 5 2059 2431 30201286 30201660 1.160000e-148 536.0
45 TraesCS1D01G274500 chrUn 87.324 71 8 1 554 623 1048736 1048806 2.340000e-11 80.5
46 TraesCS1D01G274500 chrUn 87.324 71 7 2 554 623 329632620 329632551 2.340000e-11 80.5
47 TraesCS1D01G274500 chr7D 92.573 377 21 5 2060 2431 475500943 475501317 4.160000e-148 534.0
48 TraesCS1D01G274500 chr7D 89.691 97 9 1 1913 2009 421366712 421366617 3.840000e-24 122.0
49 TraesCS1D01G274500 chr4D 78.125 224 43 3 1817 2035 459306271 459306493 1.370000e-28 137.0
50 TraesCS1D01G274500 chr4A 81.333 150 23 2 1863 2008 641570567 641570715 1.780000e-22 117.0
51 TraesCS1D01G274500 chr4A 86.022 93 13 0 547 639 479896880 479896972 1.800000e-17 100.0
52 TraesCS1D01G274500 chr3A 85.417 96 14 0 554 649 737446865 737446770 1.800000e-17 100.0
53 TraesCS1D01G274500 chr7B 81.197 117 17 3 1897 2009 437458214 437458099 3.890000e-14 89.8
54 TraesCS1D01G274500 chr2B 80.734 109 18 3 1431 1537 674722803 674722910 6.510000e-12 82.4
55 TraesCS1D01G274500 chr2B 100.000 28 0 0 1431 1458 675454997 675455024 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G274500 chr1D 370128771 370131605 2834 True 5236.000000 5236 100.000000 1 2835 1 chr1D.!!$R4 2834
1 TraesCS1D01G274500 chr1A 468684320 468686313 1993 True 754.666667 1548 89.921333 1 1818 3 chr1A.!!$R4 1817
2 TraesCS1D01G274500 chr5A 514275122 514275905 783 False 937.000000 937 88.608000 2062 2832 1 chr5A.!!$F1 770
3 TraesCS1D01G274500 chr2A 42178681 42179416 735 False 893.000000 893 88.859000 2108 2835 1 chr2A.!!$F1 727
4 TraesCS1D01G274500 chr1B 492865468 492866386 918 True 819.000000 819 83.585000 839 1718 1 chr1B.!!$R2 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.10741 AGTTGACAAGTCACCGCCAA 60.107 50.0 1.73 0.0 39.66 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2168 0.112412 AAGACGGGAGGCAACCAATT 59.888 50.0 3.41 0.0 44.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 1.096416 GGACTCCTGGTAGAGACACG 58.904 60.000 0.00 0.00 37.33 4.49
86 87 2.355513 GGACTCCTGGTAGAGACACGTA 60.356 54.545 0.00 0.00 37.33 3.57
101 102 1.136891 CACGTAGGATGCTGATGTGGA 59.863 52.381 0.00 0.00 0.00 4.02
148 149 0.107410 AGTTGACAAGTCACCGCCAA 60.107 50.000 1.73 0.00 39.66 4.52
200 201 3.814268 TGCGCCTACGGGTCGTAC 61.814 66.667 4.18 0.00 41.54 3.67
215 216 0.745468 CGTACTTAGTGGAGGCTCCC 59.255 60.000 30.03 20.55 35.03 4.30
264 265 3.198635 TGGGTTCTTTTGGTTGCAAATCA 59.801 39.130 0.00 0.00 33.18 2.57
265 266 4.141528 TGGGTTCTTTTGGTTGCAAATCAT 60.142 37.500 0.00 0.00 36.42 2.45
266 267 4.213906 GGGTTCTTTTGGTTGCAAATCATG 59.786 41.667 0.00 0.00 36.42 3.07
347 351 2.070783 TGTAAAAGCCATTCGGTCGAC 58.929 47.619 7.13 7.13 33.28 4.20
348 352 2.070783 GTAAAAGCCATTCGGTCGACA 58.929 47.619 18.91 0.00 33.28 4.35
358 362 0.249155 TCGGTCGACAGTTTCACACC 60.249 55.000 18.91 0.00 0.00 4.16
360 364 1.805120 CGGTCGACAGTTTCACACCTT 60.805 52.381 18.91 0.00 0.00 3.50
364 490 2.096819 TCGACAGTTTCACACCTTTTGC 59.903 45.455 0.00 0.00 0.00 3.68
373 499 5.412526 TTCACACCTTTTGCTAACTTACG 57.587 39.130 0.00 0.00 0.00 3.18
386 512 5.701750 TGCTAACTTACGTTTTGCTAATGGA 59.298 36.000 0.00 0.00 34.61 3.41
403 529 2.449464 TGGAAAAGGCCATCATCACAG 58.551 47.619 5.01 0.00 31.66 3.66
410 536 1.474077 GGCCATCATCACAGGTGAAAC 59.526 52.381 6.17 0.00 43.58 2.78
417 544 2.620251 TCACAGGTGAAACACTCCAG 57.380 50.000 0.00 0.00 39.98 3.86
420 547 3.646162 TCACAGGTGAAACACTCCAGTAT 59.354 43.478 0.00 0.00 39.98 2.12
451 578 4.853468 AGAGAGAGTAGAGACCATGTGA 57.147 45.455 0.00 0.00 0.00 3.58
468 595 9.071276 GACCATGTGAAATAATCCAACATCTAT 57.929 33.333 0.00 0.00 0.00 1.98
482 609 8.837788 TCCAACATCTATATACTCTGCAAATG 57.162 34.615 0.00 0.00 0.00 2.32
498 625 3.975035 GCAAATGACGAGTTTCCAGTTTC 59.025 43.478 0.00 0.00 0.00 2.78
499 626 4.537015 CAAATGACGAGTTTCCAGTTTCC 58.463 43.478 0.00 0.00 0.00 3.13
506 633 0.741915 GTTTCCAGTTTCCGTGCCAA 59.258 50.000 0.00 0.00 0.00 4.52
508 635 2.554893 GTTTCCAGTTTCCGTGCCAATA 59.445 45.455 0.00 0.00 0.00 1.90
509 636 1.816074 TCCAGTTTCCGTGCCAATAC 58.184 50.000 0.00 0.00 0.00 1.89
510 637 0.808755 CCAGTTTCCGTGCCAATACC 59.191 55.000 0.00 0.00 0.00 2.73
511 638 1.529226 CAGTTTCCGTGCCAATACCA 58.471 50.000 0.00 0.00 0.00 3.25
512 639 1.199097 CAGTTTCCGTGCCAATACCAC 59.801 52.381 0.00 0.00 0.00 4.16
521 648 0.796312 GCCAATACCACGTGTGTCAG 59.204 55.000 15.65 0.51 0.00 3.51
531 658 0.770590 CGTGTGTCAGTTCGTTCTCG 59.229 55.000 0.00 0.00 38.55 4.04
538 665 1.406180 TCAGTTCGTTCTCGGACACAA 59.594 47.619 2.02 0.00 46.89 3.33
541 668 3.247648 CAGTTCGTTCTCGGACACAAAAT 59.752 43.478 2.02 0.00 46.89 1.82
544 671 3.659786 TCGTTCTCGGACACAAAATCAT 58.340 40.909 0.00 0.00 37.69 2.45
548 675 6.203145 TCGTTCTCGGACACAAAATCATAAAA 59.797 34.615 0.00 0.00 37.69 1.52
549 676 6.853872 CGTTCTCGGACACAAAATCATAAAAA 59.146 34.615 0.00 0.00 0.00 1.94
597 724 7.891183 AATATCGCAGAGATACCAATTACAC 57.109 36.000 0.00 0.00 43.93 2.90
598 725 4.054780 TCGCAGAGATACCAATTACACC 57.945 45.455 0.00 0.00 0.00 4.16
600 727 3.477530 GCAGAGATACCAATTACACCCC 58.522 50.000 0.00 0.00 0.00 4.95
601 728 3.728845 CAGAGATACCAATTACACCCCG 58.271 50.000 0.00 0.00 0.00 5.73
603 730 1.142262 AGATACCAATTACACCCCGCC 59.858 52.381 0.00 0.00 0.00 6.13
604 731 1.142262 GATACCAATTACACCCCGCCT 59.858 52.381 0.00 0.00 0.00 5.52
605 732 0.993470 TACCAATTACACCCCGCCTT 59.007 50.000 0.00 0.00 0.00 4.35
606 733 0.113580 ACCAATTACACCCCGCCTTT 59.886 50.000 0.00 0.00 0.00 3.11
607 734 0.530288 CCAATTACACCCCGCCTTTG 59.470 55.000 0.00 0.00 0.00 2.77
608 735 0.108851 CAATTACACCCCGCCTTTGC 60.109 55.000 0.00 0.00 0.00 3.68
611 738 1.457009 TTACACCCCGCCTTTGCAAC 61.457 55.000 0.00 0.00 37.32 4.17
615 742 2.354539 CCCGCCTTTGCAACAACG 60.355 61.111 0.00 2.62 37.32 4.10
616 743 2.718731 CCGCCTTTGCAACAACGA 59.281 55.556 13.91 0.00 37.32 3.85
632 819 9.416794 TGCAACAACGAAATATCATAAAAACAT 57.583 25.926 0.00 0.00 0.00 2.71
645 832 6.781138 TCATAAAAACATTACGGATGCAGAC 58.219 36.000 0.00 0.00 39.47 3.51
646 833 6.372937 TCATAAAAACATTACGGATGCAGACA 59.627 34.615 0.00 0.00 39.47 3.41
647 834 5.446143 AAAAACATTACGGATGCAGACAA 57.554 34.783 0.00 0.00 39.47 3.18
648 835 4.419522 AAACATTACGGATGCAGACAAC 57.580 40.909 0.00 0.00 39.47 3.32
650 837 2.290008 ACATTACGGATGCAGACAACCA 60.290 45.455 0.00 0.00 38.63 3.67
651 838 2.552599 TTACGGATGCAGACAACCAA 57.447 45.000 0.00 0.00 38.63 3.67
652 839 2.093306 TACGGATGCAGACAACCAAG 57.907 50.000 0.00 0.00 38.63 3.61
653 840 0.396435 ACGGATGCAGACAACCAAGA 59.604 50.000 0.00 0.00 38.63 3.02
654 841 1.202758 ACGGATGCAGACAACCAAGAA 60.203 47.619 0.00 0.00 38.63 2.52
655 842 1.197721 CGGATGCAGACAACCAAGAAC 59.802 52.381 0.00 0.00 38.63 3.01
657 844 2.229792 GATGCAGACAACCAAGAACCA 58.770 47.619 0.00 0.00 0.00 3.67
658 845 1.388547 TGCAGACAACCAAGAACCAC 58.611 50.000 0.00 0.00 0.00 4.16
659 846 1.340502 TGCAGACAACCAAGAACCACA 60.341 47.619 0.00 0.00 0.00 4.17
661 848 2.362077 GCAGACAACCAAGAACCACAAT 59.638 45.455 0.00 0.00 0.00 2.71
662 849 3.181476 GCAGACAACCAAGAACCACAATT 60.181 43.478 0.00 0.00 0.00 2.32
664 851 5.418676 CAGACAACCAAGAACCACAATTTT 58.581 37.500 0.00 0.00 0.00 1.82
680 885 4.915085 ACAATTTTTGTGGCTTACGAATCG 59.085 37.500 0.00 0.00 43.48 3.34
683 888 4.335082 TTTTGTGGCTTACGAATCGATG 57.665 40.909 10.55 0.00 32.77 3.84
712 919 2.889678 CGTCTCATCTCATGGATCCTCA 59.110 50.000 14.23 0.00 31.27 3.86
718 925 2.121129 TCTCATGGATCCTCACATGCA 58.879 47.619 14.23 0.00 43.11 3.96
719 926 2.709397 TCTCATGGATCCTCACATGCAT 59.291 45.455 14.23 0.00 43.11 3.96
722 929 0.549469 TGGATCCTCACATGCATGCT 59.451 50.000 26.53 11.04 0.00 3.79
723 930 0.952280 GGATCCTCACATGCATGCTG 59.048 55.000 26.53 21.39 0.00 4.41
724 931 0.952280 GATCCTCACATGCATGCTGG 59.048 55.000 26.53 23.01 0.00 4.85
728 935 1.078567 TCACATGCATGCTGGCGTA 60.079 52.632 26.53 5.61 36.28 4.42
729 936 1.063006 CACATGCATGCTGGCGTAC 59.937 57.895 26.53 0.00 36.28 3.67
730 937 2.325511 CATGCATGCTGGCGTACG 59.674 61.111 20.33 11.84 36.28 3.67
731 938 2.125147 ATGCATGCTGGCGTACGT 60.125 55.556 20.33 0.00 36.28 3.57
732 939 2.173669 ATGCATGCTGGCGTACGTC 61.174 57.895 20.33 14.12 36.28 4.34
733 940 2.509336 GCATGCTGGCGTACGTCT 60.509 61.111 21.92 0.00 0.00 4.18
734 941 2.100631 GCATGCTGGCGTACGTCTT 61.101 57.895 21.92 0.31 0.00 3.01
735 942 1.999051 CATGCTGGCGTACGTCTTC 59.001 57.895 21.92 12.69 0.00 2.87
736 943 1.153628 ATGCTGGCGTACGTCTTCC 60.154 57.895 21.92 11.92 0.00 3.46
737 944 2.508663 GCTGGCGTACGTCTTCCC 60.509 66.667 21.92 11.53 0.00 3.97
738 945 2.183555 CTGGCGTACGTCTTCCCC 59.816 66.667 21.92 10.78 0.00 4.81
739 946 2.601067 TGGCGTACGTCTTCCCCA 60.601 61.111 21.92 13.40 0.00 4.96
773 980 1.022735 CATCTCATCTTGGCTGCACC 58.977 55.000 0.50 0.00 39.84 5.01
775 982 1.571955 TCTCATCTTGGCTGCACCTA 58.428 50.000 0.50 0.00 40.22 3.08
776 983 1.208052 TCTCATCTTGGCTGCACCTAC 59.792 52.381 0.50 0.00 40.22 3.18
787 994 4.201951 CACCTACCGTGCATCCAC 57.798 61.111 0.00 0.00 35.18 4.02
808 1015 2.685100 GCAGAACGTAGCACTACCTTT 58.315 47.619 2.31 0.00 32.61 3.11
809 1016 2.412089 GCAGAACGTAGCACTACCTTTG 59.588 50.000 2.31 0.00 32.61 2.77
834 1041 5.514059 TTGCCGACTAATTAAACACGTAC 57.486 39.130 0.00 0.00 0.00 3.67
837 1044 4.266265 GCCGACTAATTAAACACGTACTCC 59.734 45.833 0.00 0.00 0.00 3.85
845 1052 0.879765 AACACGTACTCCTCGACAGG 59.120 55.000 0.00 0.00 42.01 4.00
886 1093 3.157881 TGATTAGTCTATCCCGGCTGAG 58.842 50.000 0.00 0.00 0.00 3.35
923 1137 3.191581 CGTCTACTCATGTTCCTGTCACT 59.808 47.826 0.00 0.00 0.00 3.41
932 1146 4.436998 CCTGTCACTCCGTCGGCC 62.437 72.222 6.34 0.00 0.00 6.13
951 1165 3.314307 CCTCTATATATGGGAGGCGGA 57.686 52.381 17.72 0.00 39.87 5.54
987 1201 2.737180 CACACTCCCACTCACGCT 59.263 61.111 0.00 0.00 0.00 5.07
990 1204 2.282251 ACTCCCACTCACGCTCGA 60.282 61.111 0.00 0.00 0.00 4.04
1029 1244 2.780643 CGCATGCAGAACACCTCG 59.219 61.111 19.57 0.00 0.00 4.63
1052 1267 3.800863 TCTCGCTCGAGCCGTCAC 61.801 66.667 30.66 3.50 41.71 3.67
1141 1377 3.861797 ATTGCTACCCCCGAGGCG 61.862 66.667 0.00 0.00 40.58 5.52
1222 1458 1.226323 CGTTCTCGCGATCCTCGTT 60.226 57.895 10.36 0.00 42.81 3.85
1690 1956 1.071894 CATGTGTCGATTTAGCTCGCG 60.072 52.381 0.00 0.00 38.52 5.87
1727 1993 2.813908 GTTAGCGACCAGGCACGG 60.814 66.667 8.42 0.00 34.64 4.94
1766 2032 2.238395 TGGGATGCTGTGTAGTAATGCA 59.762 45.455 0.00 0.00 38.05 3.96
1780 2046 5.999205 AGTAATGCATTTCACATTTGGGA 57.001 34.783 18.75 0.00 38.62 4.37
1789 2055 1.074248 ACATTTGGGACCGGTGGAC 59.926 57.895 14.63 1.49 0.00 4.02
1794 2061 0.616371 TTGGGACCGGTGGACTTATG 59.384 55.000 14.63 0.00 0.00 1.90
1818 2085 1.082104 GTTTGGTTGCTCGGCTTCG 60.082 57.895 0.00 0.00 0.00 3.79
1819 2086 2.258013 TTTGGTTGCTCGGCTTCGG 61.258 57.895 0.00 0.00 34.13 4.30
1822 2089 3.127533 GTTGCTCGGCTTCGGCAT 61.128 61.111 0.00 0.00 43.96 4.40
1823 2090 3.126879 TTGCTCGGCTTCGGCATG 61.127 61.111 0.00 0.00 43.96 4.06
1826 2093 2.436646 CTCGGCTTCGGCATGGTT 60.437 61.111 0.00 0.00 43.96 3.67
1827 2094 2.033448 TCGGCTTCGGCATGGTTT 59.967 55.556 0.00 0.00 43.96 3.27
1828 2095 1.586154 CTCGGCTTCGGCATGGTTTT 61.586 55.000 0.00 0.00 43.96 2.43
1829 2096 1.175983 TCGGCTTCGGCATGGTTTTT 61.176 50.000 0.00 0.00 43.96 1.94
1850 2117 5.798125 TTTTCCCTTGCATATTTGTGTCA 57.202 34.783 0.00 0.00 0.00 3.58
1851 2118 5.389859 TTTCCCTTGCATATTTGTGTCAG 57.610 39.130 0.00 0.00 0.00 3.51
1852 2119 4.032960 TCCCTTGCATATTTGTGTCAGT 57.967 40.909 0.00 0.00 0.00 3.41
1853 2120 4.406456 TCCCTTGCATATTTGTGTCAGTT 58.594 39.130 0.00 0.00 0.00 3.16
1854 2121 4.218200 TCCCTTGCATATTTGTGTCAGTTG 59.782 41.667 0.00 0.00 0.00 3.16
1855 2122 4.487948 CCTTGCATATTTGTGTCAGTTGG 58.512 43.478 0.00 0.00 0.00 3.77
1856 2123 4.022068 CCTTGCATATTTGTGTCAGTTGGT 60.022 41.667 0.00 0.00 0.00 3.67
1857 2124 4.764679 TGCATATTTGTGTCAGTTGGTC 57.235 40.909 0.00 0.00 0.00 4.02
1858 2125 3.505680 TGCATATTTGTGTCAGTTGGTCC 59.494 43.478 0.00 0.00 0.00 4.46
1859 2126 3.758554 GCATATTTGTGTCAGTTGGTCCT 59.241 43.478 0.00 0.00 0.00 3.85
1860 2127 4.379813 GCATATTTGTGTCAGTTGGTCCTG 60.380 45.833 0.00 0.00 0.00 3.86
1861 2128 3.576078 ATTTGTGTCAGTTGGTCCTGA 57.424 42.857 0.00 0.00 39.11 3.86
1862 2129 3.576078 TTTGTGTCAGTTGGTCCTGAT 57.424 42.857 0.00 0.00 43.03 2.90
1863 2130 3.576078 TTGTGTCAGTTGGTCCTGATT 57.424 42.857 0.00 0.00 43.03 2.57
1864 2131 2.849942 TGTGTCAGTTGGTCCTGATTG 58.150 47.619 0.00 0.00 43.03 2.67
1865 2132 2.437651 TGTGTCAGTTGGTCCTGATTGA 59.562 45.455 0.00 0.00 43.03 2.57
1866 2133 3.070018 GTGTCAGTTGGTCCTGATTGAG 58.930 50.000 0.00 0.00 43.03 3.02
1867 2134 2.079925 GTCAGTTGGTCCTGATTGAGC 58.920 52.381 0.00 0.00 43.03 4.26
1868 2135 1.699083 TCAGTTGGTCCTGATTGAGCA 59.301 47.619 0.00 0.00 40.73 4.26
1869 2136 2.306805 TCAGTTGGTCCTGATTGAGCAT 59.693 45.455 0.00 0.00 41.89 3.79
1870 2137 3.519107 TCAGTTGGTCCTGATTGAGCATA 59.481 43.478 0.00 0.00 41.89 3.14
1871 2138 4.164796 TCAGTTGGTCCTGATTGAGCATAT 59.835 41.667 0.00 0.00 41.89 1.78
1872 2139 4.275196 CAGTTGGTCCTGATTGAGCATATG 59.725 45.833 0.00 0.00 41.89 1.78
1873 2140 2.854963 TGGTCCTGATTGAGCATATGC 58.145 47.619 20.36 20.36 37.80 3.14
1874 2141 2.173143 TGGTCCTGATTGAGCATATGCA 59.827 45.455 28.62 9.60 45.16 3.96
1875 2142 3.181437 TGGTCCTGATTGAGCATATGCAT 60.181 43.478 28.62 14.18 45.16 3.96
1876 2143 3.190744 GGTCCTGATTGAGCATATGCATG 59.809 47.826 28.62 10.19 45.16 4.06
1877 2144 4.070009 GTCCTGATTGAGCATATGCATGA 58.930 43.478 28.62 14.00 45.16 3.07
1878 2145 4.517832 GTCCTGATTGAGCATATGCATGAA 59.482 41.667 28.62 17.44 45.16 2.57
1879 2146 5.009310 GTCCTGATTGAGCATATGCATGAAA 59.991 40.000 28.62 16.54 45.16 2.69
1880 2147 5.595133 TCCTGATTGAGCATATGCATGAAAA 59.405 36.000 28.62 14.91 45.16 2.29
1881 2148 6.097129 TCCTGATTGAGCATATGCATGAAAAA 59.903 34.615 28.62 13.31 45.16 1.94
1909 2176 9.434420 AACCATCATTTGTATGTTAATTGGTTG 57.566 29.630 0.00 0.00 32.95 3.77
1910 2177 7.548780 ACCATCATTTGTATGTTAATTGGTTGC 59.451 33.333 0.00 0.00 33.34 4.17
1911 2178 7.011295 CCATCATTTGTATGTTAATTGGTTGCC 59.989 37.037 0.00 0.00 33.34 4.52
1912 2179 7.238486 TCATTTGTATGTTAATTGGTTGCCT 57.762 32.000 0.00 0.00 33.34 4.75
1913 2180 7.319646 TCATTTGTATGTTAATTGGTTGCCTC 58.680 34.615 0.00 0.00 33.34 4.70
1914 2181 5.652994 TTGTATGTTAATTGGTTGCCTCC 57.347 39.130 0.00 0.00 0.00 4.30
1915 2182 4.020543 TGTATGTTAATTGGTTGCCTCCC 58.979 43.478 0.00 0.00 0.00 4.30
1916 2183 1.540267 TGTTAATTGGTTGCCTCCCG 58.460 50.000 0.00 0.00 0.00 5.14
1917 2184 1.202952 TGTTAATTGGTTGCCTCCCGT 60.203 47.619 0.00 0.00 0.00 5.28
1918 2185 1.471287 GTTAATTGGTTGCCTCCCGTC 59.529 52.381 0.00 0.00 0.00 4.79
1919 2186 0.988832 TAATTGGTTGCCTCCCGTCT 59.011 50.000 0.00 0.00 0.00 4.18
1920 2187 0.112412 AATTGGTTGCCTCCCGTCTT 59.888 50.000 0.00 0.00 0.00 3.01
1921 2188 0.322546 ATTGGTTGCCTCCCGTCTTC 60.323 55.000 0.00 0.00 0.00 2.87
1922 2189 1.415672 TTGGTTGCCTCCCGTCTTCT 61.416 55.000 0.00 0.00 0.00 2.85
1923 2190 1.375326 GGTTGCCTCCCGTCTTCTT 59.625 57.895 0.00 0.00 0.00 2.52
1924 2191 0.955919 GGTTGCCTCCCGTCTTCTTG 60.956 60.000 0.00 0.00 0.00 3.02
1925 2192 1.302511 TTGCCTCCCGTCTTCTTGC 60.303 57.895 0.00 0.00 0.00 4.01
1926 2193 2.050836 TTGCCTCCCGTCTTCTTGCA 62.051 55.000 0.00 0.00 0.00 4.08
1927 2194 1.078143 GCCTCCCGTCTTCTTGCAT 60.078 57.895 0.00 0.00 0.00 3.96
1928 2195 1.092345 GCCTCCCGTCTTCTTGCATC 61.092 60.000 0.00 0.00 0.00 3.91
1929 2196 0.250234 CCTCCCGTCTTCTTGCATCA 59.750 55.000 0.00 0.00 0.00 3.07
1930 2197 1.134280 CCTCCCGTCTTCTTGCATCAT 60.134 52.381 0.00 0.00 0.00 2.45
1931 2198 2.103094 CCTCCCGTCTTCTTGCATCATA 59.897 50.000 0.00 0.00 0.00 2.15
1932 2199 3.388308 CTCCCGTCTTCTTGCATCATAG 58.612 50.000 0.00 0.00 0.00 2.23
1933 2200 2.766263 TCCCGTCTTCTTGCATCATAGT 59.234 45.455 0.00 0.00 0.00 2.12
1934 2201 3.958147 TCCCGTCTTCTTGCATCATAGTA 59.042 43.478 0.00 0.00 0.00 1.82
1935 2202 4.404394 TCCCGTCTTCTTGCATCATAGTAA 59.596 41.667 0.00 0.00 0.00 2.24
1936 2203 4.508124 CCCGTCTTCTTGCATCATAGTAAC 59.492 45.833 0.00 0.00 0.00 2.50
1937 2204 5.109210 CCGTCTTCTTGCATCATAGTAACA 58.891 41.667 0.00 0.00 0.00 2.41
1938 2205 5.005779 CCGTCTTCTTGCATCATAGTAACAC 59.994 44.000 0.00 0.00 0.00 3.32
1939 2206 5.005779 CGTCTTCTTGCATCATAGTAACACC 59.994 44.000 0.00 0.00 0.00 4.16
1940 2207 6.109359 GTCTTCTTGCATCATAGTAACACCT 58.891 40.000 0.00 0.00 0.00 4.00
1941 2208 6.256757 GTCTTCTTGCATCATAGTAACACCTC 59.743 42.308 0.00 0.00 0.00 3.85
1942 2209 5.939764 TCTTGCATCATAGTAACACCTCT 57.060 39.130 0.00 0.00 0.00 3.69
1943 2210 7.342026 TCTTCTTGCATCATAGTAACACCTCTA 59.658 37.037 0.00 0.00 0.00 2.43
1944 2211 7.603180 TCTTGCATCATAGTAACACCTCTAT 57.397 36.000 0.00 0.00 0.00 1.98
1945 2212 7.436933 TCTTGCATCATAGTAACACCTCTATG 58.563 38.462 0.00 0.00 42.54 2.23
1946 2213 6.731292 TGCATCATAGTAACACCTCTATGT 57.269 37.500 10.55 0.00 42.12 2.29
1947 2214 7.833285 TGCATCATAGTAACACCTCTATGTA 57.167 36.000 10.55 0.00 42.12 2.29
1948 2215 7.658261 TGCATCATAGTAACACCTCTATGTAC 58.342 38.462 10.55 0.00 42.12 2.90
1949 2216 7.091443 GCATCATAGTAACACCTCTATGTACC 58.909 42.308 10.55 0.48 42.12 3.34
1950 2217 6.872628 TCATAGTAACACCTCTATGTACCG 57.127 41.667 10.55 0.00 42.12 4.02
1951 2218 6.359804 TCATAGTAACACCTCTATGTACCGT 58.640 40.000 10.55 0.00 42.12 4.83
1952 2219 4.978083 AGTAACACCTCTATGTACCGTG 57.022 45.455 0.00 0.00 30.75 4.94
1953 2220 4.338879 AGTAACACCTCTATGTACCGTGT 58.661 43.478 0.00 0.00 39.27 4.49
1954 2221 4.768968 AGTAACACCTCTATGTACCGTGTT 59.231 41.667 8.70 8.70 46.37 3.32
1955 2222 4.612264 AACACCTCTATGTACCGTGTTT 57.388 40.909 0.00 0.00 43.24 2.83
1956 2223 3.921677 ACACCTCTATGTACCGTGTTTG 58.078 45.455 0.00 0.00 34.07 2.93
1957 2224 3.259064 CACCTCTATGTACCGTGTTTGG 58.741 50.000 0.00 0.00 0.00 3.28
1958 2225 2.901839 ACCTCTATGTACCGTGTTTGGT 59.098 45.455 0.00 0.00 46.26 3.67
1959 2226 3.325716 ACCTCTATGTACCGTGTTTGGTT 59.674 43.478 0.00 0.00 43.56 3.67
1960 2227 3.682858 CCTCTATGTACCGTGTTTGGTTG 59.317 47.826 0.00 0.00 43.56 3.77
1961 2228 3.068560 TCTATGTACCGTGTTTGGTTGC 58.931 45.455 0.00 0.00 43.56 4.17
1962 2229 1.975660 ATGTACCGTGTTTGGTTGCT 58.024 45.000 0.00 0.00 43.56 3.91
1963 2230 1.301423 TGTACCGTGTTTGGTTGCTC 58.699 50.000 0.00 0.00 43.56 4.26
1964 2231 0.233848 GTACCGTGTTTGGTTGCTCG 59.766 55.000 0.00 0.00 43.56 5.03
1965 2232 1.500512 TACCGTGTTTGGTTGCTCGC 61.501 55.000 0.00 0.00 43.56 5.03
1966 2233 2.712539 CGTGTTTGGTTGCTCGCA 59.287 55.556 0.00 0.00 0.00 5.10
1967 2234 1.282570 CGTGTTTGGTTGCTCGCAT 59.717 52.632 0.00 0.00 0.00 4.73
1968 2235 0.317770 CGTGTTTGGTTGCTCGCATT 60.318 50.000 0.00 0.00 0.00 3.56
1969 2236 1.130955 GTGTTTGGTTGCTCGCATTG 58.869 50.000 0.00 0.00 0.00 2.82
1970 2237 0.743688 TGTTTGGTTGCTCGCATTGT 59.256 45.000 0.00 0.00 0.00 2.71
1971 2238 1.268999 TGTTTGGTTGCTCGCATTGTC 60.269 47.619 0.00 0.00 0.00 3.18
1972 2239 1.001378 GTTTGGTTGCTCGCATTGTCT 60.001 47.619 0.00 0.00 0.00 3.41
1973 2240 0.592637 TTGGTTGCTCGCATTGTCTG 59.407 50.000 0.00 0.00 0.00 3.51
1974 2241 0.534877 TGGTTGCTCGCATTGTCTGT 60.535 50.000 0.00 0.00 0.00 3.41
1975 2242 1.270571 TGGTTGCTCGCATTGTCTGTA 60.271 47.619 0.00 0.00 0.00 2.74
1976 2243 1.128692 GGTTGCTCGCATTGTCTGTAC 59.871 52.381 0.00 0.00 0.00 2.90
1977 2244 2.069273 GTTGCTCGCATTGTCTGTACT 58.931 47.619 0.00 0.00 0.00 2.73
1978 2245 1.996292 TGCTCGCATTGTCTGTACTC 58.004 50.000 0.00 0.00 0.00 2.59
1979 2246 1.272212 TGCTCGCATTGTCTGTACTCA 59.728 47.619 0.00 0.00 0.00 3.41
1980 2247 2.094026 TGCTCGCATTGTCTGTACTCAT 60.094 45.455 0.00 0.00 0.00 2.90
1981 2248 3.130340 TGCTCGCATTGTCTGTACTCATA 59.870 43.478 0.00 0.00 0.00 2.15
1982 2249 3.487574 GCTCGCATTGTCTGTACTCATAC 59.512 47.826 0.00 0.00 0.00 2.39
1983 2250 4.734989 GCTCGCATTGTCTGTACTCATACT 60.735 45.833 0.00 0.00 32.00 2.12
1984 2251 5.505819 GCTCGCATTGTCTGTACTCATACTA 60.506 44.000 0.00 0.00 32.00 1.82
1985 2252 6.061231 TCGCATTGTCTGTACTCATACTAG 57.939 41.667 0.00 0.00 32.00 2.57
1986 2253 5.589050 TCGCATTGTCTGTACTCATACTAGT 59.411 40.000 0.00 0.00 32.00 2.57
1987 2254 5.683302 CGCATTGTCTGTACTCATACTAGTG 59.317 44.000 5.39 0.00 32.00 2.74
1988 2255 5.460419 GCATTGTCTGTACTCATACTAGTGC 59.540 44.000 5.39 0.00 33.21 4.40
1989 2256 6.564328 CATTGTCTGTACTCATACTAGTGCA 58.436 40.000 5.39 0.00 39.39 4.57
1990 2257 6.775594 TTGTCTGTACTCATACTAGTGCAT 57.224 37.500 5.39 0.00 40.61 3.96
1991 2258 6.136541 TGTCTGTACTCATACTAGTGCATG 57.863 41.667 5.39 2.20 40.61 4.06
1992 2259 5.652452 TGTCTGTACTCATACTAGTGCATGT 59.348 40.000 5.39 2.39 40.61 3.21
1993 2260 6.152831 TGTCTGTACTCATACTAGTGCATGTT 59.847 38.462 5.39 0.00 40.61 2.71
1994 2261 6.473778 GTCTGTACTCATACTAGTGCATGTTG 59.526 42.308 5.39 3.33 40.61 3.33
1995 2262 6.152831 TCTGTACTCATACTAGTGCATGTTGT 59.847 38.462 5.39 8.48 40.61 3.32
1996 2263 6.697395 TGTACTCATACTAGTGCATGTTGTT 58.303 36.000 5.39 0.00 37.20 2.83
1997 2264 7.158697 TGTACTCATACTAGTGCATGTTGTTT 58.841 34.615 5.39 0.00 37.20 2.83
1998 2265 6.486253 ACTCATACTAGTGCATGTTGTTTG 57.514 37.500 5.39 0.00 0.00 2.93
1999 2266 5.412594 ACTCATACTAGTGCATGTTGTTTGG 59.587 40.000 5.39 0.00 0.00 3.28
2000 2267 5.312895 TCATACTAGTGCATGTTGTTTGGT 58.687 37.500 5.39 0.00 0.00 3.67
2001 2268 5.767665 TCATACTAGTGCATGTTGTTTGGTT 59.232 36.000 5.39 0.00 0.00 3.67
2002 2269 4.305989 ACTAGTGCATGTTGTTTGGTTG 57.694 40.909 0.00 0.00 0.00 3.77
2003 2270 1.938625 AGTGCATGTTGTTTGGTTGC 58.061 45.000 0.00 0.00 0.00 4.17
2004 2271 1.206610 AGTGCATGTTGTTTGGTTGCA 59.793 42.857 0.00 0.00 40.73 4.08
2005 2272 2.158928 AGTGCATGTTGTTTGGTTGCAT 60.159 40.909 0.00 0.00 44.27 3.96
2006 2273 3.069300 AGTGCATGTTGTTTGGTTGCATA 59.931 39.130 0.00 0.00 44.27 3.14
2007 2274 3.184178 GTGCATGTTGTTTGGTTGCATAC 59.816 43.478 0.00 0.00 44.27 2.39
2008 2275 3.181472 TGCATGTTGTTTGGTTGCATACA 60.181 39.130 0.00 0.00 38.32 2.29
2009 2276 3.184178 GCATGTTGTTTGGTTGCATACAC 59.816 43.478 0.00 0.00 33.58 2.90
2010 2277 3.444703 TGTTGTTTGGTTGCATACACC 57.555 42.857 0.00 0.00 0.00 4.16
2011 2278 2.223595 TGTTGTTTGGTTGCATACACCG 60.224 45.455 1.71 0.00 0.00 4.94
2012 2279 1.968704 TGTTTGGTTGCATACACCGA 58.031 45.000 1.71 0.00 0.00 4.69
2013 2280 2.298610 TGTTTGGTTGCATACACCGAA 58.701 42.857 4.82 4.82 0.00 4.30
2014 2281 2.033550 TGTTTGGTTGCATACACCGAAC 59.966 45.455 23.91 23.91 44.29 3.95
2015 2282 1.968704 TTGGTTGCATACACCGAACA 58.031 45.000 1.71 0.00 0.00 3.18
2016 2283 2.192664 TGGTTGCATACACCGAACAT 57.807 45.000 1.71 0.00 0.00 2.71
2017 2284 1.809547 TGGTTGCATACACCGAACATG 59.190 47.619 1.71 0.00 0.00 3.21
2018 2285 2.080693 GGTTGCATACACCGAACATGA 58.919 47.619 0.00 0.00 0.00 3.07
2019 2286 2.682856 GGTTGCATACACCGAACATGAT 59.317 45.455 0.00 0.00 0.00 2.45
2020 2287 3.128589 GGTTGCATACACCGAACATGATT 59.871 43.478 0.00 0.00 0.00 2.57
2021 2288 4.334203 GGTTGCATACACCGAACATGATTA 59.666 41.667 0.00 0.00 0.00 1.75
2022 2289 5.163703 GGTTGCATACACCGAACATGATTAA 60.164 40.000 0.00 0.00 0.00 1.40
2023 2290 5.733226 TGCATACACCGAACATGATTAAG 57.267 39.130 0.00 0.00 0.00 1.85
2024 2291 5.423886 TGCATACACCGAACATGATTAAGA 58.576 37.500 0.00 0.00 0.00 2.10
2025 2292 5.523552 TGCATACACCGAACATGATTAAGAG 59.476 40.000 0.00 0.00 0.00 2.85
2026 2293 5.523916 GCATACACCGAACATGATTAAGAGT 59.476 40.000 0.00 0.00 0.00 3.24
2027 2294 6.037172 GCATACACCGAACATGATTAAGAGTT 59.963 38.462 0.00 0.00 0.00 3.01
2028 2295 7.223971 GCATACACCGAACATGATTAAGAGTTA 59.776 37.037 0.00 0.00 0.00 2.24
2029 2296 9.093970 CATACACCGAACATGATTAAGAGTTAA 57.906 33.333 0.00 0.00 0.00 2.01
2030 2297 9.832445 ATACACCGAACATGATTAAGAGTTAAT 57.168 29.630 0.00 0.00 38.49 1.40
2032 2299 9.314321 ACACCGAACATGATTAAGAGTTAATAG 57.686 33.333 0.00 0.00 36.04 1.73
2033 2300 8.276325 CACCGAACATGATTAAGAGTTAATAGC 58.724 37.037 0.00 0.00 36.04 2.97
2034 2301 8.204836 ACCGAACATGATTAAGAGTTAATAGCT 58.795 33.333 0.00 0.00 36.04 3.32
2035 2302 9.046296 CCGAACATGATTAAGAGTTAATAGCTT 57.954 33.333 0.00 0.00 36.04 3.74
2039 2306 9.035607 ACATGATTAAGAGTTAATAGCTTCACG 57.964 33.333 0.00 0.00 36.04 4.35
2040 2307 9.035607 CATGATTAAGAGTTAATAGCTTCACGT 57.964 33.333 0.00 0.00 36.04 4.49
2041 2308 8.407457 TGATTAAGAGTTAATAGCTTCACGTG 57.593 34.615 9.94 9.94 36.04 4.49
2042 2309 8.033038 TGATTAAGAGTTAATAGCTTCACGTGT 58.967 33.333 16.51 0.00 36.04 4.49
2043 2310 8.773404 ATTAAGAGTTAATAGCTTCACGTGTT 57.227 30.769 16.51 3.65 34.22 3.32
2044 2311 9.865321 ATTAAGAGTTAATAGCTTCACGTGTTA 57.135 29.630 16.51 2.59 34.22 2.41
2045 2312 7.578169 AAGAGTTAATAGCTTCACGTGTTAC 57.422 36.000 16.51 5.91 0.00 2.50
2046 2313 6.684686 AGAGTTAATAGCTTCACGTGTTACA 58.315 36.000 16.51 0.00 0.00 2.41
2047 2314 6.585322 AGAGTTAATAGCTTCACGTGTTACAC 59.415 38.462 16.51 5.27 0.00 2.90
2048 2315 6.453092 AGTTAATAGCTTCACGTGTTACACT 58.547 36.000 16.51 9.60 31.34 3.55
2049 2316 7.596494 AGTTAATAGCTTCACGTGTTACACTA 58.404 34.615 16.51 11.39 31.34 2.74
2050 2317 7.754027 AGTTAATAGCTTCACGTGTTACACTAG 59.246 37.037 16.51 5.88 31.34 2.57
2051 2318 5.892160 ATAGCTTCACGTGTTACACTAGA 57.108 39.130 16.51 8.13 31.34 2.43
2052 2319 4.162096 AGCTTCACGTGTTACACTAGAG 57.838 45.455 16.51 7.18 31.34 2.43
2053 2320 3.568853 AGCTTCACGTGTTACACTAGAGT 59.431 43.478 16.51 0.00 31.34 3.24
2073 2340 0.321564 GCCCCTGTTGGAATTTTGCC 60.322 55.000 0.00 0.00 35.39 4.52
2078 2345 3.323403 CCCTGTTGGAATTTTGCCAGTAA 59.677 43.478 0.00 0.00 36.64 2.24
2153 2420 1.270518 ACACATGTGAGTGGAGTGAGC 60.271 52.381 31.94 0.00 43.72 4.26
2157 2424 0.537371 TGTGAGTGGAGTGAGCGAGA 60.537 55.000 0.00 0.00 0.00 4.04
2188 2455 1.141053 GTCCCACCACAGAAGTTGAGT 59.859 52.381 0.00 0.00 0.00 3.41
2193 2460 3.126831 CACCACAGAAGTTGAGTGAGAC 58.873 50.000 5.98 0.00 37.01 3.36
2383 2664 3.569250 TTGCTGCTCGGGAAAATTAAC 57.431 42.857 0.00 0.00 0.00 2.01
2437 2722 3.834489 TTACTGAACCGTTTACCACCA 57.166 42.857 0.00 0.00 0.00 4.17
2452 2737 2.291735 ACCACCATTCCAGATCATTGCA 60.292 45.455 0.00 0.00 0.00 4.08
2454 2739 2.100252 CACCATTCCAGATCATTGCACC 59.900 50.000 0.00 0.00 0.00 5.01
2580 2865 1.739667 GTTTTTGGGGAGCGCACTT 59.260 52.632 11.47 0.00 0.00 3.16
2617 2918 1.555533 GATGACTTCTTCCCCGACCTT 59.444 52.381 0.00 0.00 0.00 3.50
2651 2952 1.666553 GACGACATGGGCGACAACA 60.667 57.895 15.69 0.00 0.00 3.33
2652 2953 1.897398 GACGACATGGGCGACAACAC 61.897 60.000 15.69 0.00 0.00 3.32
2657 2958 1.152860 ATGGGCGACAACACCAACA 60.153 52.632 0.00 0.00 37.89 3.33
2689 2990 2.011741 CTCCCGCTGCACCGTATGTA 62.012 60.000 0.00 0.00 0.00 2.29
2697 2998 4.447724 CGCTGCACCGTATGTAATTCTATT 59.552 41.667 0.00 0.00 0.00 1.73
2702 3003 7.497595 TGCACCGTATGTAATTCTATTCTTCT 58.502 34.615 0.00 0.00 0.00 2.85
2704 3005 8.276325 GCACCGTATGTAATTCTATTCTTCTTG 58.724 37.037 0.00 0.00 0.00 3.02
2728 3029 7.951591 TGTTCGAGATCATGGTAGAATTCATA 58.048 34.615 8.44 0.00 0.00 2.15
2755 3056 6.077993 TCTAGTATGTGCCCTAGATGTGATT 58.922 40.000 0.00 0.00 35.82 2.57
2765 3066 6.126796 TGCCCTAGATGTGATTTGTTCATCTA 60.127 38.462 11.73 11.73 43.98 1.98
2802 3103 8.090831 TCGCATGATTAGTTTAATCTCTGCTAT 58.909 33.333 20.98 4.57 43.84 2.97
2805 3106 9.823098 CATGATTAGTTTAATCTCTGCTATTGC 57.177 33.333 9.48 0.00 43.79 3.56
2806 3107 9.790344 ATGATTAGTTTAATCTCTGCTATTGCT 57.210 29.630 0.00 0.00 43.79 3.91
2810 3111 5.819901 AGTTTAATCTCTGCTATTGCTGTCC 59.180 40.000 0.00 0.00 40.48 4.02
2819 3120 5.761726 TCTGCTATTGCTGTCCTGATTTATG 59.238 40.000 0.00 0.00 40.48 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.432146 TGAGTCCACATCAGCATCCTAC 59.568 50.000 0.00 0.00 0.00 3.18
86 87 1.576577 TGAGTCCACATCAGCATCCT 58.423 50.000 0.00 0.00 0.00 3.24
101 102 1.178276 GTCCTCGAGACCACATGAGT 58.822 55.000 15.71 0.00 39.84 3.41
127 128 1.557443 GGCGGTGACTTGTCAACTCG 61.557 60.000 15.57 14.51 0.00 4.18
200 201 0.395862 TCTCGGGAGCCTCCACTAAG 60.396 60.000 13.90 3.97 38.64 2.18
215 216 0.447801 CGAGCAAATTGGGGTTCTCG 59.552 55.000 5.78 5.78 37.65 4.04
264 265 1.858091 CACTTAATCGGCTCTCGCAT 58.142 50.000 0.00 0.00 39.05 4.73
265 266 0.806102 GCACTTAATCGGCTCTCGCA 60.806 55.000 0.00 0.00 39.05 5.10
266 267 1.812214 CGCACTTAATCGGCTCTCGC 61.812 60.000 0.00 0.00 39.05 5.03
267 268 1.209275 CCGCACTTAATCGGCTCTCG 61.209 60.000 0.00 0.00 39.14 4.04
268 269 2.594541 CCGCACTTAATCGGCTCTC 58.405 57.895 0.00 0.00 39.14 3.20
269 270 4.835927 CCGCACTTAATCGGCTCT 57.164 55.556 0.00 0.00 39.14 4.09
347 351 5.248870 AGTTAGCAAAAGGTGTGAAACTG 57.751 39.130 0.00 0.00 38.04 3.16
348 352 5.914898 AAGTTAGCAAAAGGTGTGAAACT 57.085 34.783 0.00 0.00 38.04 2.66
373 499 4.001618 TGGCCTTTTCCATTAGCAAAAC 57.998 40.909 3.32 0.00 0.00 2.43
386 512 2.173519 CACCTGTGATGATGGCCTTTT 58.826 47.619 3.32 0.00 0.00 2.27
403 529 4.022329 CCCAAAATACTGGAGTGTTTCACC 60.022 45.833 2.44 0.00 38.19 4.02
410 536 5.046591 TCTCTACACCCAAAATACTGGAGTG 60.047 44.000 8.70 8.70 40.58 3.51
417 544 7.556996 TCTCTACTCTCTCTACACCCAAAATAC 59.443 40.741 0.00 0.00 0.00 1.89
420 547 5.711036 GTCTCTACTCTCTCTACACCCAAAA 59.289 44.000 0.00 0.00 0.00 2.44
468 595 5.810587 GGAAACTCGTCATTTGCAGAGTATA 59.189 40.000 4.64 0.00 42.42 1.47
469 596 4.631813 GGAAACTCGTCATTTGCAGAGTAT 59.368 41.667 4.64 0.00 42.42 2.12
470 597 3.994392 GGAAACTCGTCATTTGCAGAGTA 59.006 43.478 4.64 0.00 42.42 2.59
471 598 2.808543 GGAAACTCGTCATTTGCAGAGT 59.191 45.455 0.00 0.00 44.81 3.24
476 603 3.626028 AACTGGAAACTCGTCATTTGC 57.374 42.857 0.00 0.00 0.00 3.68
482 609 1.525619 CACGGAAACTGGAAACTCGTC 59.474 52.381 0.00 0.00 0.00 4.20
498 625 1.669760 ACACGTGGTATTGGCACGG 60.670 57.895 21.57 0.00 45.36 4.94
499 626 1.225376 ACACACGTGGTATTGGCACG 61.225 55.000 21.57 0.00 46.35 5.34
506 633 1.338973 ACGAACTGACACACGTGGTAT 59.661 47.619 21.57 4.12 37.58 2.73
508 635 0.108520 AACGAACTGACACACGTGGT 60.109 50.000 21.57 14.73 38.92 4.16
509 636 0.575390 GAACGAACTGACACACGTGG 59.425 55.000 21.57 11.39 38.92 4.94
510 637 1.517276 GAGAACGAACTGACACACGTG 59.483 52.381 15.48 15.48 38.92 4.49
511 638 1.836383 GAGAACGAACTGACACACGT 58.164 50.000 0.00 0.00 40.64 4.49
512 639 0.770590 CGAGAACGAACTGACACACG 59.229 55.000 0.00 0.00 42.66 4.49
513 640 1.129326 CCGAGAACGAACTGACACAC 58.871 55.000 0.00 0.00 42.66 3.82
521 648 3.246699 TGATTTTGTGTCCGAGAACGAAC 59.753 43.478 0.00 0.00 42.66 3.95
571 698 9.419297 GTGTAATTGGTATCTCTGCGATATTAA 57.581 33.333 0.00 0.00 36.99 1.40
572 699 8.033038 GGTGTAATTGGTATCTCTGCGATATTA 58.967 37.037 0.00 0.00 36.99 0.98
575 702 5.279306 GGGTGTAATTGGTATCTCTGCGATA 60.279 44.000 0.00 0.00 33.48 2.92
576 703 4.503296 GGGTGTAATTGGTATCTCTGCGAT 60.503 45.833 0.00 0.00 36.11 4.58
577 704 3.181469 GGGTGTAATTGGTATCTCTGCGA 60.181 47.826 0.00 0.00 0.00 5.10
578 705 3.131396 GGGTGTAATTGGTATCTCTGCG 58.869 50.000 0.00 0.00 0.00 5.18
579 706 3.477530 GGGGTGTAATTGGTATCTCTGC 58.522 50.000 0.00 0.00 0.00 4.26
580 707 3.728845 CGGGGTGTAATTGGTATCTCTG 58.271 50.000 0.00 0.00 0.00 3.35
581 708 2.104281 GCGGGGTGTAATTGGTATCTCT 59.896 50.000 0.00 0.00 0.00 3.10
582 709 2.490991 GCGGGGTGTAATTGGTATCTC 58.509 52.381 0.00 0.00 0.00 2.75
583 710 1.142262 GGCGGGGTGTAATTGGTATCT 59.858 52.381 0.00 0.00 0.00 1.98
584 711 1.142262 AGGCGGGGTGTAATTGGTATC 59.858 52.381 0.00 0.00 0.00 2.24
585 712 1.218844 AGGCGGGGTGTAATTGGTAT 58.781 50.000 0.00 0.00 0.00 2.73
586 713 0.993470 AAGGCGGGGTGTAATTGGTA 59.007 50.000 0.00 0.00 0.00 3.25
588 715 0.530288 CAAAGGCGGGGTGTAATTGG 59.470 55.000 0.00 0.00 0.00 3.16
590 717 0.540830 TGCAAAGGCGGGGTGTAATT 60.541 50.000 0.00 0.00 45.35 1.40
591 718 0.540830 TTGCAAAGGCGGGGTGTAAT 60.541 50.000 0.00 0.00 45.35 1.89
592 719 1.152735 TTGCAAAGGCGGGGTGTAA 60.153 52.632 0.00 0.00 45.35 2.41
593 720 1.899534 GTTGCAAAGGCGGGGTGTA 60.900 57.895 0.00 0.00 45.35 2.90
595 722 2.790791 TTGTTGCAAAGGCGGGGTG 61.791 57.895 0.00 0.00 45.35 4.61
596 723 2.443016 TTGTTGCAAAGGCGGGGT 60.443 55.556 0.00 0.00 45.35 4.95
597 724 2.028925 GTTGTTGCAAAGGCGGGG 59.971 61.111 0.00 0.00 45.35 5.73
598 725 2.343163 TTCGTTGTTGCAAAGGCGGG 62.343 55.000 0.00 0.00 45.35 6.13
600 727 1.486439 ATTTCGTTGTTGCAAAGGCG 58.514 45.000 0.00 6.07 45.35 5.52
601 728 4.233789 TGATATTTCGTTGTTGCAAAGGC 58.766 39.130 0.00 0.00 41.68 4.35
605 732 9.249457 TGTTTTTATGATATTTCGTTGTTGCAA 57.751 25.926 0.00 0.00 0.00 4.08
606 733 8.803201 TGTTTTTATGATATTTCGTTGTTGCA 57.197 26.923 0.00 0.00 0.00 4.08
630 817 2.355197 TGGTTGTCTGCATCCGTAATG 58.645 47.619 0.00 0.00 37.30 1.90
632 819 2.037902 TCTTGGTTGTCTGCATCCGTAA 59.962 45.455 0.00 0.00 37.30 3.18
634 821 0.396435 TCTTGGTTGTCTGCATCCGT 59.604 50.000 0.00 0.00 37.30 4.69
635 822 1.197721 GTTCTTGGTTGTCTGCATCCG 59.802 52.381 0.00 0.00 37.30 4.18
636 823 1.541588 GGTTCTTGGTTGTCTGCATCC 59.458 52.381 0.00 0.00 35.54 3.51
637 824 2.030805 GTGGTTCTTGGTTGTCTGCATC 60.031 50.000 0.00 0.00 0.00 3.91
638 825 1.956477 GTGGTTCTTGGTTGTCTGCAT 59.044 47.619 0.00 0.00 0.00 3.96
639 826 1.340502 TGTGGTTCTTGGTTGTCTGCA 60.341 47.619 0.00 0.00 0.00 4.41
640 827 1.388547 TGTGGTTCTTGGTTGTCTGC 58.611 50.000 0.00 0.00 0.00 4.26
642 829 5.675684 AAAATTGTGGTTCTTGGTTGTCT 57.324 34.783 0.00 0.00 0.00 3.41
657 844 4.915085 CGATTCGTAAGCCACAAAAATTGT 59.085 37.500 0.00 0.00 40.81 2.71
658 845 5.150683 TCGATTCGTAAGCCACAAAAATTG 58.849 37.500 5.89 0.00 37.18 2.32
659 846 5.365403 TCGATTCGTAAGCCACAAAAATT 57.635 34.783 5.89 0.00 37.18 1.82
661 848 4.717991 CATCGATTCGTAAGCCACAAAAA 58.282 39.130 5.89 0.00 37.18 1.94
662 849 3.425625 GCATCGATTCGTAAGCCACAAAA 60.426 43.478 5.89 0.00 37.18 2.44
664 851 1.663643 GCATCGATTCGTAAGCCACAA 59.336 47.619 5.89 0.00 37.18 3.33
678 883 1.139734 GAGACGCCTCTTGCATCGA 59.860 57.895 0.00 0.00 37.23 3.59
680 885 1.202510 AGATGAGACGCCTCTTGCATC 60.203 52.381 0.00 0.00 41.33 3.91
683 888 0.174389 TGAGATGAGACGCCTCTTGC 59.826 55.000 0.00 0.00 40.10 4.01
692 897 3.640498 TGTGAGGATCCATGAGATGAGAC 59.360 47.826 15.82 0.00 34.42 3.36
712 919 2.463620 CGTACGCCAGCATGCATGT 61.464 57.895 26.79 14.18 31.97 3.21
718 925 1.153628 GGAAGACGTACGCCAGCAT 60.154 57.895 16.72 0.00 0.00 3.79
719 926 2.260434 GGAAGACGTACGCCAGCA 59.740 61.111 16.72 0.00 0.00 4.41
722 929 2.601067 TGGGGAAGACGTACGCCA 60.601 61.111 16.72 17.11 44.58 5.69
723 930 2.125793 GTGGGGAAGACGTACGCC 60.126 66.667 16.72 3.66 39.15 5.68
724 931 1.153881 GAGTGGGGAAGACGTACGC 60.154 63.158 16.72 8.42 0.00 4.42
728 935 1.913762 CAGGGAGTGGGGAAGACGT 60.914 63.158 0.00 0.00 0.00 4.34
729 936 2.982130 CAGGGAGTGGGGAAGACG 59.018 66.667 0.00 0.00 0.00 4.18
730 937 1.566298 ATGCAGGGAGTGGGGAAGAC 61.566 60.000 0.00 0.00 0.00 3.01
731 938 1.229951 ATGCAGGGAGTGGGGAAGA 60.230 57.895 0.00 0.00 0.00 2.87
732 939 1.077212 CATGCAGGGAGTGGGGAAG 60.077 63.158 0.00 0.00 0.00 3.46
733 940 2.615465 CCATGCAGGGAGTGGGGAA 61.615 63.158 13.35 0.00 0.00 3.97
734 941 3.016971 CCATGCAGGGAGTGGGGA 61.017 66.667 13.35 0.00 0.00 4.81
735 942 3.341629 ACCATGCAGGGAGTGGGG 61.342 66.667 26.87 1.67 43.89 4.96
736 943 2.044650 CACCATGCAGGGAGTGGG 60.045 66.667 26.87 3.91 43.89 4.61
737 944 2.753043 GCACCATGCAGGGAGTGG 60.753 66.667 26.87 13.57 44.26 4.00
787 994 2.925306 AAAGGTAGTGCTACGTTCTGCG 60.925 50.000 14.92 0.00 41.53 5.18
808 1015 5.206299 CGTGTTTAATTAGTCGGCAAAACA 58.794 37.500 0.00 0.00 35.21 2.83
809 1016 5.207033 ACGTGTTTAATTAGTCGGCAAAAC 58.793 37.500 0.00 0.00 0.00 2.43
834 1041 1.444553 GTCGCAACCTGTCGAGGAG 60.445 63.158 0.00 0.00 42.93 3.69
837 1044 1.444553 GGAGTCGCAACCTGTCGAG 60.445 63.158 0.00 0.00 35.21 4.04
845 1052 4.433615 TCAGAGATATTTGGAGTCGCAAC 58.566 43.478 0.00 0.00 0.00 4.17
886 1093 3.823873 AGTAGACGATCTGGGATGTGATC 59.176 47.826 0.00 0.00 36.62 2.92
923 1137 2.651455 CCATATATAGAGGCCGACGGA 58.349 52.381 20.50 0.00 0.00 4.69
932 1146 3.829601 GGATCCGCCTCCCATATATAGAG 59.170 52.174 0.00 5.36 0.00 2.43
968 1182 2.737180 CGTGAGTGGGAGTGTGCT 59.263 61.111 0.00 0.00 0.00 4.40
987 1201 2.358369 AGAGCGGTCGTGTCTCGA 60.358 61.111 9.28 0.00 46.83 4.04
990 1204 2.034376 AGGAGAGCGGTCGTGTCT 59.966 61.111 9.28 2.84 0.00 3.41
1671 1931 1.200483 CGCGAGCTAAATCGACACAT 58.800 50.000 0.00 0.00 45.56 3.21
1676 1936 0.860203 CGTCACGCGAGCTAAATCGA 60.860 55.000 15.93 0.00 45.56 3.59
1677 1937 0.860203 TCGTCACGCGAGCTAAATCG 60.860 55.000 15.93 6.01 45.68 3.34
1690 1956 1.387084 CAAGCTCGCTAGTTTCGTCAC 59.613 52.381 0.00 0.00 0.00 3.67
1718 1984 4.864334 GCCCATCTCCGTGCCTGG 62.864 72.222 0.00 0.00 0.00 4.45
1766 2032 1.892474 CACCGGTCCCAAATGTGAAAT 59.108 47.619 2.59 0.00 0.00 2.17
1780 2046 2.995547 GCCCATAAGTCCACCGGT 59.004 61.111 0.00 0.00 0.00 5.28
1789 2055 0.455972 CAACCAAACGCGCCCATAAG 60.456 55.000 5.73 0.00 0.00 1.73
1794 2061 4.700365 GAGCAACCAAACGCGCCC 62.700 66.667 5.73 0.00 0.00 6.13
1827 2094 6.166984 TGACACAAATATGCAAGGGAAAAA 57.833 33.333 0.00 0.00 0.00 1.94
1828 2095 5.304101 ACTGACACAAATATGCAAGGGAAAA 59.696 36.000 0.00 0.00 0.00 2.29
1829 2096 4.832266 ACTGACACAAATATGCAAGGGAAA 59.168 37.500 0.00 0.00 0.00 3.13
1830 2097 4.406456 ACTGACACAAATATGCAAGGGAA 58.594 39.130 0.00 0.00 0.00 3.97
1831 2098 4.032960 ACTGACACAAATATGCAAGGGA 57.967 40.909 0.00 0.00 0.00 4.20
1832 2099 4.487948 CAACTGACACAAATATGCAAGGG 58.512 43.478 0.00 0.00 0.00 3.95
1833 2100 4.022068 ACCAACTGACACAAATATGCAAGG 60.022 41.667 0.00 0.00 0.00 3.61
1834 2101 5.125100 ACCAACTGACACAAATATGCAAG 57.875 39.130 0.00 0.00 0.00 4.01
1835 2102 4.022416 GGACCAACTGACACAAATATGCAA 60.022 41.667 0.00 0.00 0.00 4.08
1836 2103 3.505680 GGACCAACTGACACAAATATGCA 59.494 43.478 0.00 0.00 0.00 3.96
1837 2104 3.758554 AGGACCAACTGACACAAATATGC 59.241 43.478 0.00 0.00 0.00 3.14
1838 2105 5.003160 TCAGGACCAACTGACACAAATATG 58.997 41.667 0.00 0.00 42.26 1.78
1839 2106 5.241403 TCAGGACCAACTGACACAAATAT 57.759 39.130 0.00 0.00 42.26 1.28
1840 2107 4.698201 TCAGGACCAACTGACACAAATA 57.302 40.909 0.00 0.00 42.26 1.40
1841 2108 3.576078 TCAGGACCAACTGACACAAAT 57.424 42.857 0.00 0.00 42.26 2.32
1849 2116 2.189594 TGCTCAATCAGGACCAACTG 57.810 50.000 0.00 0.00 39.84 3.16
1850 2117 4.458397 CATATGCTCAATCAGGACCAACT 58.542 43.478 0.00 0.00 0.00 3.16
1851 2118 3.004106 GCATATGCTCAATCAGGACCAAC 59.996 47.826 20.64 0.00 38.21 3.77
1852 2119 3.216800 GCATATGCTCAATCAGGACCAA 58.783 45.455 20.64 0.00 38.21 3.67
1853 2120 2.173143 TGCATATGCTCAATCAGGACCA 59.827 45.455 27.13 0.26 42.66 4.02
1854 2121 2.854963 TGCATATGCTCAATCAGGACC 58.145 47.619 27.13 0.00 42.66 4.46
1855 2122 4.070009 TCATGCATATGCTCAATCAGGAC 58.930 43.478 27.13 0.00 42.66 3.85
1856 2123 4.360951 TCATGCATATGCTCAATCAGGA 57.639 40.909 27.13 11.07 42.66 3.86
1857 2124 5.447624 TTTCATGCATATGCTCAATCAGG 57.552 39.130 27.13 8.85 42.66 3.86
1883 2150 9.434420 CAACCAATTAACATACAAATGATGGTT 57.566 29.630 0.00 0.00 38.92 3.67
1884 2151 7.548780 GCAACCAATTAACATACAAATGATGGT 59.451 33.333 0.00 0.00 36.54 3.55
1885 2152 7.011295 GGCAACCAATTAACATACAAATGATGG 59.989 37.037 0.00 0.00 36.54 3.51
1886 2153 7.765360 AGGCAACCAATTAACATACAAATGATG 59.235 33.333 0.00 0.00 35.13 3.07
1887 2154 7.850193 AGGCAACCAATTAACATACAAATGAT 58.150 30.769 0.00 0.00 35.13 2.45
1888 2155 7.238486 AGGCAACCAATTAACATACAAATGA 57.762 32.000 0.00 0.00 35.13 2.57
1889 2156 6.534793 GGAGGCAACCAATTAACATACAAATG 59.465 38.462 0.00 0.00 36.71 2.32
1890 2157 6.351796 GGGAGGCAACCAATTAACATACAAAT 60.352 38.462 3.41 0.00 37.17 2.32
1891 2158 5.046950 GGGAGGCAACCAATTAACATACAAA 60.047 40.000 3.41 0.00 37.17 2.83
1892 2159 4.464597 GGGAGGCAACCAATTAACATACAA 59.535 41.667 3.41 0.00 37.17 2.41
1893 2160 4.020543 GGGAGGCAACCAATTAACATACA 58.979 43.478 3.41 0.00 37.17 2.29
1894 2161 3.066203 CGGGAGGCAACCAATTAACATAC 59.934 47.826 3.41 0.00 37.17 2.39
1895 2162 3.283751 CGGGAGGCAACCAATTAACATA 58.716 45.455 3.41 0.00 37.17 2.29
1896 2163 2.099405 CGGGAGGCAACCAATTAACAT 58.901 47.619 3.41 0.00 37.17 2.71
1897 2164 1.202952 ACGGGAGGCAACCAATTAACA 60.203 47.619 3.41 0.00 37.17 2.41
1898 2165 1.471287 GACGGGAGGCAACCAATTAAC 59.529 52.381 3.41 0.00 38.26 2.01
1899 2166 1.353022 AGACGGGAGGCAACCAATTAA 59.647 47.619 3.41 0.00 44.00 1.40
1900 2167 0.988832 AGACGGGAGGCAACCAATTA 59.011 50.000 3.41 0.00 44.00 1.40
1901 2168 0.112412 AAGACGGGAGGCAACCAATT 59.888 50.000 3.41 0.00 44.00 2.32
1902 2169 0.322546 GAAGACGGGAGGCAACCAAT 60.323 55.000 3.41 0.00 44.00 3.16
1903 2170 1.072505 GAAGACGGGAGGCAACCAA 59.927 57.895 3.41 0.00 44.00 3.67
1904 2171 1.415672 AAGAAGACGGGAGGCAACCA 61.416 55.000 3.41 0.00 44.00 3.67
1905 2172 0.955919 CAAGAAGACGGGAGGCAACC 60.956 60.000 0.00 0.00 44.00 3.77
1906 2173 1.578206 GCAAGAAGACGGGAGGCAAC 61.578 60.000 0.00 0.00 44.00 4.17
1907 2174 1.302511 GCAAGAAGACGGGAGGCAA 60.303 57.895 0.00 0.00 44.00 4.52
1908 2175 1.841302 ATGCAAGAAGACGGGAGGCA 61.841 55.000 0.00 0.00 44.00 4.75
1909 2176 1.078143 ATGCAAGAAGACGGGAGGC 60.078 57.895 0.00 0.00 39.17 4.70
1910 2177 0.250234 TGATGCAAGAAGACGGGAGG 59.750 55.000 0.00 0.00 0.00 4.30
1911 2178 2.322355 ATGATGCAAGAAGACGGGAG 57.678 50.000 0.00 0.00 0.00 4.30
1912 2179 2.766263 ACTATGATGCAAGAAGACGGGA 59.234 45.455 0.00 0.00 0.00 5.14
1913 2180 3.185246 ACTATGATGCAAGAAGACGGG 57.815 47.619 0.00 0.00 0.00 5.28
1914 2181 5.005779 GTGTTACTATGATGCAAGAAGACGG 59.994 44.000 0.00 0.00 0.00 4.79
1915 2182 5.005779 GGTGTTACTATGATGCAAGAAGACG 59.994 44.000 0.00 0.00 0.00 4.18
1916 2183 6.109359 AGGTGTTACTATGATGCAAGAAGAC 58.891 40.000 0.00 0.00 0.00 3.01
1917 2184 6.155221 AGAGGTGTTACTATGATGCAAGAAGA 59.845 38.462 0.00 0.00 0.00 2.87
1918 2185 6.344500 AGAGGTGTTACTATGATGCAAGAAG 58.656 40.000 0.00 0.00 0.00 2.85
1919 2186 6.299805 AGAGGTGTTACTATGATGCAAGAA 57.700 37.500 0.00 0.00 0.00 2.52
1920 2187 5.939764 AGAGGTGTTACTATGATGCAAGA 57.060 39.130 0.00 0.00 0.00 3.02
1921 2188 7.212976 ACATAGAGGTGTTACTATGATGCAAG 58.787 38.462 17.24 0.00 44.80 4.01
1922 2189 7.124573 ACATAGAGGTGTTACTATGATGCAA 57.875 36.000 17.24 0.00 44.80 4.08
1923 2190 6.731292 ACATAGAGGTGTTACTATGATGCA 57.269 37.500 17.24 0.00 44.80 3.96
1924 2191 7.091443 GGTACATAGAGGTGTTACTATGATGC 58.909 42.308 17.24 8.80 44.80 3.91
1925 2192 7.040617 ACGGTACATAGAGGTGTTACTATGATG 60.041 40.741 17.24 8.58 44.80 3.07
1926 2193 7.002879 ACGGTACATAGAGGTGTTACTATGAT 58.997 38.462 17.24 7.44 44.80 2.45
1927 2194 6.261603 CACGGTACATAGAGGTGTTACTATGA 59.738 42.308 17.24 3.12 44.80 2.15
1928 2195 6.039047 ACACGGTACATAGAGGTGTTACTATG 59.961 42.308 0.00 0.00 46.32 2.23
1929 2196 6.125029 ACACGGTACATAGAGGTGTTACTAT 58.875 40.000 0.00 0.00 33.62 2.12
1930 2197 5.500234 ACACGGTACATAGAGGTGTTACTA 58.500 41.667 0.00 0.00 33.62 1.82
1931 2198 4.338879 ACACGGTACATAGAGGTGTTACT 58.661 43.478 0.00 0.00 33.62 2.24
1932 2199 4.708726 ACACGGTACATAGAGGTGTTAC 57.291 45.455 0.00 0.00 33.62 2.50
1933 2200 5.472148 CAAACACGGTACATAGAGGTGTTA 58.528 41.667 8.10 0.00 33.62 2.41
1934 2201 4.312443 CAAACACGGTACATAGAGGTGTT 58.688 43.478 2.32 2.32 33.62 3.32
1935 2202 3.306502 CCAAACACGGTACATAGAGGTGT 60.307 47.826 0.00 0.00 36.13 4.16
1936 2203 3.259064 CCAAACACGGTACATAGAGGTG 58.741 50.000 0.00 0.00 0.00 4.00
1937 2204 2.901839 ACCAAACACGGTACATAGAGGT 59.098 45.455 0.00 0.00 37.57 3.85
1938 2205 3.604875 ACCAAACACGGTACATAGAGG 57.395 47.619 0.00 0.00 37.57 3.69
1939 2206 3.124636 GCAACCAAACACGGTACATAGAG 59.875 47.826 0.00 0.00 38.76 2.43
1940 2207 3.068560 GCAACCAAACACGGTACATAGA 58.931 45.455 0.00 0.00 38.76 1.98
1941 2208 3.071479 AGCAACCAAACACGGTACATAG 58.929 45.455 0.00 0.00 38.76 2.23
1942 2209 3.068560 GAGCAACCAAACACGGTACATA 58.931 45.455 0.00 0.00 38.76 2.29
1943 2210 1.877443 GAGCAACCAAACACGGTACAT 59.123 47.619 0.00 0.00 38.76 2.29
1944 2211 1.301423 GAGCAACCAAACACGGTACA 58.699 50.000 0.00 0.00 38.76 2.90
1945 2212 0.233848 CGAGCAACCAAACACGGTAC 59.766 55.000 0.00 0.00 38.76 3.34
1946 2213 1.500512 GCGAGCAACCAAACACGGTA 61.501 55.000 0.00 0.00 38.76 4.02
1947 2214 2.830285 GCGAGCAACCAAACACGGT 61.830 57.895 0.00 0.00 42.71 4.83
1948 2215 2.051345 GCGAGCAACCAAACACGG 60.051 61.111 0.00 0.00 0.00 4.94
1949 2216 0.317770 AATGCGAGCAACCAAACACG 60.318 50.000 0.57 0.00 0.00 4.49
1950 2217 1.130955 CAATGCGAGCAACCAAACAC 58.869 50.000 0.57 0.00 0.00 3.32
1951 2218 0.743688 ACAATGCGAGCAACCAAACA 59.256 45.000 0.57 0.00 0.00 2.83
1952 2219 1.001378 AGACAATGCGAGCAACCAAAC 60.001 47.619 0.57 0.00 0.00 2.93
1953 2220 1.001487 CAGACAATGCGAGCAACCAAA 60.001 47.619 0.57 0.00 0.00 3.28
1954 2221 0.592637 CAGACAATGCGAGCAACCAA 59.407 50.000 0.57 0.00 0.00 3.67
1955 2222 0.534877 ACAGACAATGCGAGCAACCA 60.535 50.000 0.57 0.00 0.00 3.67
1956 2223 1.128692 GTACAGACAATGCGAGCAACC 59.871 52.381 0.57 0.00 0.00 3.77
1957 2224 2.069273 AGTACAGACAATGCGAGCAAC 58.931 47.619 0.57 0.00 0.00 4.17
1958 2225 2.288763 TGAGTACAGACAATGCGAGCAA 60.289 45.455 0.57 0.00 0.00 3.91
1959 2226 1.272212 TGAGTACAGACAATGCGAGCA 59.728 47.619 0.00 0.00 0.00 4.26
1960 2227 1.996292 TGAGTACAGACAATGCGAGC 58.004 50.000 0.00 0.00 0.00 5.03
1961 2228 4.926244 AGTATGAGTACAGACAATGCGAG 58.074 43.478 0.00 0.00 40.23 5.03
1962 2229 4.983671 AGTATGAGTACAGACAATGCGA 57.016 40.909 0.00 0.00 40.23 5.10
1963 2230 5.683302 CACTAGTATGAGTACAGACAATGCG 59.317 44.000 0.00 0.00 40.23 4.73
1964 2231 5.460419 GCACTAGTATGAGTACAGACAATGC 59.540 44.000 0.00 0.00 40.23 3.56
1965 2232 6.564328 TGCACTAGTATGAGTACAGACAATG 58.436 40.000 0.00 0.00 40.23 2.82
1966 2233 6.775594 TGCACTAGTATGAGTACAGACAAT 57.224 37.500 0.00 0.00 40.23 2.71
1967 2234 6.152831 ACATGCACTAGTATGAGTACAGACAA 59.847 38.462 11.75 0.00 39.88 3.18
1968 2235 5.652452 ACATGCACTAGTATGAGTACAGACA 59.348 40.000 11.75 0.00 39.88 3.41
1969 2236 6.137794 ACATGCACTAGTATGAGTACAGAC 57.862 41.667 11.75 0.00 39.88 3.51
1970 2237 6.152831 ACAACATGCACTAGTATGAGTACAGA 59.847 38.462 11.75 0.00 39.88 3.41
1971 2238 6.333416 ACAACATGCACTAGTATGAGTACAG 58.667 40.000 11.75 0.00 39.88 2.74
1972 2239 6.280855 ACAACATGCACTAGTATGAGTACA 57.719 37.500 11.75 0.00 39.88 2.90
1973 2240 7.413000 CCAAACAACATGCACTAGTATGAGTAC 60.413 40.741 11.75 0.00 39.88 2.73
1974 2241 6.593770 CCAAACAACATGCACTAGTATGAGTA 59.406 38.462 11.75 0.00 39.88 2.59
1975 2242 5.412594 CCAAACAACATGCACTAGTATGAGT 59.587 40.000 11.75 7.39 39.88 3.41
1976 2243 5.412594 ACCAAACAACATGCACTAGTATGAG 59.587 40.000 11.75 6.88 39.88 2.90
1977 2244 5.312895 ACCAAACAACATGCACTAGTATGA 58.687 37.500 11.75 0.00 39.88 2.15
1978 2245 5.627499 ACCAAACAACATGCACTAGTATG 57.373 39.130 0.00 0.00 42.71 2.39
1979 2246 5.564651 GCAACCAAACAACATGCACTAGTAT 60.565 40.000 0.00 0.00 37.00 2.12
1980 2247 4.261405 GCAACCAAACAACATGCACTAGTA 60.261 41.667 0.00 0.00 37.00 1.82
1981 2248 3.490761 GCAACCAAACAACATGCACTAGT 60.491 43.478 0.00 0.00 37.00 2.57
1982 2249 3.052036 GCAACCAAACAACATGCACTAG 58.948 45.455 0.00 0.00 37.00 2.57
1983 2250 2.428530 TGCAACCAAACAACATGCACTA 59.571 40.909 0.00 0.00 41.67 2.74
1984 2251 1.206610 TGCAACCAAACAACATGCACT 59.793 42.857 0.00 0.00 41.67 4.40
1985 2252 1.649664 TGCAACCAAACAACATGCAC 58.350 45.000 0.00 0.00 41.67 4.57
1987 2254 3.184178 GTGTATGCAACCAAACAACATGC 59.816 43.478 0.00 0.00 37.52 4.06
1988 2255 3.740321 GGTGTATGCAACCAAACAACATG 59.260 43.478 0.98 0.00 29.86 3.21
1989 2256 3.551863 CGGTGTATGCAACCAAACAACAT 60.552 43.478 6.84 0.00 29.86 2.71
1990 2257 2.223595 CGGTGTATGCAACCAAACAACA 60.224 45.455 6.84 0.00 29.86 3.33
1991 2258 2.033550 TCGGTGTATGCAACCAAACAAC 59.966 45.455 6.84 1.48 0.00 3.32
1992 2259 2.298610 TCGGTGTATGCAACCAAACAA 58.701 42.857 6.84 0.00 0.00 2.83
1993 2260 1.968704 TCGGTGTATGCAACCAAACA 58.031 45.000 6.84 0.00 0.00 2.83
1994 2261 2.033550 TGTTCGGTGTATGCAACCAAAC 59.966 45.455 6.84 5.05 0.00 2.93
1995 2262 2.298610 TGTTCGGTGTATGCAACCAAA 58.701 42.857 6.84 0.00 0.00 3.28
1996 2263 1.968704 TGTTCGGTGTATGCAACCAA 58.031 45.000 6.84 0.00 0.00 3.67
1997 2264 1.809547 CATGTTCGGTGTATGCAACCA 59.190 47.619 6.84 0.00 0.00 3.67
1998 2265 2.080693 TCATGTTCGGTGTATGCAACC 58.919 47.619 0.00 0.00 0.00 3.77
1999 2266 4.355543 AATCATGTTCGGTGTATGCAAC 57.644 40.909 0.00 0.00 0.00 4.17
2000 2267 5.877564 TCTTAATCATGTTCGGTGTATGCAA 59.122 36.000 0.00 0.00 0.00 4.08
2001 2268 5.423886 TCTTAATCATGTTCGGTGTATGCA 58.576 37.500 0.00 0.00 0.00 3.96
2002 2269 5.523916 ACTCTTAATCATGTTCGGTGTATGC 59.476 40.000 0.00 0.00 0.00 3.14
2003 2270 7.539712 AACTCTTAATCATGTTCGGTGTATG 57.460 36.000 0.00 0.00 0.00 2.39
2004 2271 9.832445 ATTAACTCTTAATCATGTTCGGTGTAT 57.168 29.630 0.00 0.00 30.20 2.29
2006 2273 9.314321 CTATTAACTCTTAATCATGTTCGGTGT 57.686 33.333 0.00 0.00 37.12 4.16
2007 2274 8.276325 GCTATTAACTCTTAATCATGTTCGGTG 58.724 37.037 0.00 0.00 37.12 4.94
2008 2275 8.204836 AGCTATTAACTCTTAATCATGTTCGGT 58.795 33.333 0.00 0.00 37.12 4.69
2009 2276 8.594881 AGCTATTAACTCTTAATCATGTTCGG 57.405 34.615 0.00 0.00 37.12 4.30
2013 2280 9.035607 CGTGAAGCTATTAACTCTTAATCATGT 57.964 33.333 0.00 0.00 37.12 3.21
2014 2281 9.035607 ACGTGAAGCTATTAACTCTTAATCATG 57.964 33.333 0.00 0.00 37.12 3.07
2015 2282 9.035607 CACGTGAAGCTATTAACTCTTAATCAT 57.964 33.333 10.90 0.00 37.12 2.45
2016 2283 8.033038 ACACGTGAAGCTATTAACTCTTAATCA 58.967 33.333 25.01 0.00 37.12 2.57
2017 2284 8.408743 ACACGTGAAGCTATTAACTCTTAATC 57.591 34.615 25.01 0.00 37.12 1.75
2018 2285 8.773404 AACACGTGAAGCTATTAACTCTTAAT 57.227 30.769 25.01 0.00 39.13 1.40
2019 2286 9.132521 GTAACACGTGAAGCTATTAACTCTTAA 57.867 33.333 25.01 0.00 0.00 1.85
2020 2287 8.298854 TGTAACACGTGAAGCTATTAACTCTTA 58.701 33.333 25.01 1.86 0.00 2.10
2021 2288 7.115947 GTGTAACACGTGAAGCTATTAACTCTT 59.884 37.037 25.01 2.91 36.32 2.85
2022 2289 6.585322 GTGTAACACGTGAAGCTATTAACTCT 59.415 38.462 25.01 0.00 36.32 3.24
2023 2290 6.585322 AGTGTAACACGTGAAGCTATTAACTC 59.415 38.462 25.01 7.10 41.43 3.01
2024 2291 6.453092 AGTGTAACACGTGAAGCTATTAACT 58.547 36.000 25.01 11.49 41.43 2.24
2025 2292 6.701432 AGTGTAACACGTGAAGCTATTAAC 57.299 37.500 25.01 9.69 41.43 2.01
2026 2293 7.819644 TCTAGTGTAACACGTGAAGCTATTAA 58.180 34.615 25.01 0.00 41.43 1.40
2027 2294 7.120285 ACTCTAGTGTAACACGTGAAGCTATTA 59.880 37.037 25.01 6.24 41.43 0.98
2028 2295 6.072064 ACTCTAGTGTAACACGTGAAGCTATT 60.072 38.462 25.01 7.35 41.43 1.73
2029 2296 5.415077 ACTCTAGTGTAACACGTGAAGCTAT 59.585 40.000 25.01 6.42 41.43 2.97
2030 2297 4.758674 ACTCTAGTGTAACACGTGAAGCTA 59.241 41.667 25.01 14.44 41.43 3.32
2031 2298 3.568853 ACTCTAGTGTAACACGTGAAGCT 59.431 43.478 25.01 14.10 41.43 3.74
2032 2299 3.669122 CACTCTAGTGTAACACGTGAAGC 59.331 47.826 25.01 11.50 41.43 3.86
2043 2310 5.680449 TCCAACAGGGGCACTCTAGTGTA 62.680 52.174 11.54 0.00 41.01 2.90
2045 2312 2.447556 TCCAACAGGGGCACTCTAGTG 61.448 57.143 5.73 5.73 41.51 2.74
2046 2313 0.178903 TCCAACAGGGGCACTCTAGT 60.179 55.000 0.00 0.00 37.22 2.57
2047 2314 0.984230 TTCCAACAGGGGCACTCTAG 59.016 55.000 0.00 0.00 37.22 2.43
2048 2315 1.668826 ATTCCAACAGGGGCACTCTA 58.331 50.000 0.00 0.00 37.22 2.43
2049 2316 0.779997 AATTCCAACAGGGGCACTCT 59.220 50.000 0.00 0.00 37.22 3.24
2050 2317 1.632589 AAATTCCAACAGGGGCACTC 58.367 50.000 0.00 0.00 37.22 3.51
2051 2318 1.693606 CAAAATTCCAACAGGGGCACT 59.306 47.619 0.00 0.00 37.22 4.40
2052 2319 1.877680 GCAAAATTCCAACAGGGGCAC 60.878 52.381 0.00 0.00 37.22 5.01
2053 2320 0.396060 GCAAAATTCCAACAGGGGCA 59.604 50.000 0.00 0.00 37.22 5.36
2054 2321 0.321564 GGCAAAATTCCAACAGGGGC 60.322 55.000 0.00 0.00 37.22 5.80
2055 2322 1.002315 CTGGCAAAATTCCAACAGGGG 59.998 52.381 0.00 0.00 37.22 4.79
2056 2323 1.693606 ACTGGCAAAATTCCAACAGGG 59.306 47.619 0.00 0.00 32.41 4.45
2057 2324 4.559153 CTTACTGGCAAAATTCCAACAGG 58.441 43.478 0.00 0.00 32.41 4.00
2058 2325 3.989817 GCTTACTGGCAAAATTCCAACAG 59.010 43.478 0.00 0.00 32.41 3.16
2059 2326 3.244044 GGCTTACTGGCAAAATTCCAACA 60.244 43.478 0.00 0.00 41.37 3.33
2060 2327 3.006859 AGGCTTACTGGCAAAATTCCAAC 59.993 43.478 0.00 0.00 44.55 3.77
2153 2420 4.021719 TGGTGGGACTAAACTTTAGTCTCG 60.022 45.833 28.74 3.33 45.56 4.04
2157 2424 4.657039 TCTGTGGTGGGACTAAACTTTAGT 59.343 41.667 13.09 13.09 0.00 2.24
2188 2455 8.314021 TCATCTTATAAAGAAGTGCAAGTCTCA 58.686 33.333 1.08 0.00 41.63 3.27
2193 2460 7.495279 AGAGCTCATCTTATAAAGAAGTGCAAG 59.505 37.037 17.77 0.27 43.91 4.01
2224 2491 5.394993 CCTCTTCTCATGCTCATACAAGTGA 60.395 44.000 0.00 0.00 0.00 3.41
2311 2591 2.435938 TCGGCTCAATCCCGCAAC 60.436 61.111 0.00 0.00 45.19 4.17
2411 2692 6.204495 GGTGGTAAACGGTTCAGTAATTAACA 59.796 38.462 0.00 0.00 0.00 2.41
2437 2722 1.027357 GCGGTGCAATGATCTGGAAT 58.973 50.000 0.00 0.00 0.00 3.01
2452 2737 0.603975 GAGAAGACTTGCTTGGCGGT 60.604 55.000 0.00 0.00 36.83 5.68
2454 2739 0.603707 TGGAGAAGACTTGCTTGGCG 60.604 55.000 0.00 0.00 36.83 5.69
2497 2782 1.846712 GAGGCCTGCTGTCCCTTCTT 61.847 60.000 12.00 0.00 0.00 2.52
2520 2805 1.826921 GATCACGAGAGGCGGGGTA 60.827 63.158 0.00 0.00 45.52 3.69
2560 2845 2.915137 TGCGCTCCCCAAAAACCC 60.915 61.111 9.73 0.00 0.00 4.11
2599 2900 0.685097 CAAGGTCGGGGAAGAAGTCA 59.315 55.000 0.00 0.00 0.00 3.41
2617 2918 1.596934 GTCGAGGATGAGGTTGCCA 59.403 57.895 0.00 0.00 0.00 4.92
2689 2990 9.829507 ATGATCTCGAACAAGAAGAATAGAATT 57.170 29.630 0.00 0.00 0.00 2.17
2697 2998 4.808414 ACCATGATCTCGAACAAGAAGA 57.192 40.909 0.00 0.00 0.00 2.87
2702 3003 6.639563 TGAATTCTACCATGATCTCGAACAA 58.360 36.000 7.05 0.00 0.00 2.83
2704 3005 8.994429 ATATGAATTCTACCATGATCTCGAAC 57.006 34.615 7.05 0.00 0.00 3.95
2728 3029 6.554982 TCACATCTAGGGCACATACTAGAAAT 59.445 38.462 0.00 0.00 46.12 2.17
2802 3103 5.316167 ACAGAACATAAATCAGGACAGCAA 58.684 37.500 0.00 0.00 0.00 3.91
2805 3106 9.994432 GAATAAACAGAACATAAATCAGGACAG 57.006 33.333 0.00 0.00 0.00 3.51
2806 3107 8.664798 CGAATAAACAGAACATAAATCAGGACA 58.335 33.333 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.