Multiple sequence alignment - TraesCS1D01G274400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G274400 chr1D 100.000 4137 0 0 1 4137 370016392 370012256 0.000000e+00 7640.0
1 TraesCS1D01G274400 chr1D 92.727 220 15 1 3380 3598 433308011 433308230 2.400000e-82 316.0
2 TraesCS1D01G274400 chr1A 92.163 3254 189 30 6 3238 468608947 468605739 0.000000e+00 4536.0
3 TraesCS1D01G274400 chr1A 86.911 191 16 6 2691 2880 558098371 558098553 5.420000e-49 206.0
4 TraesCS1D01G274400 chr1A 85.567 194 20 6 2687 2880 504571172 504570987 3.260000e-46 196.0
5 TraesCS1D01G274400 chr1B 94.162 1336 60 8 1555 2887 492789296 492787976 0.000000e+00 2019.0
6 TraesCS1D01G274400 chr1B 89.981 1577 91 27 2 1567 492793287 492791767 0.000000e+00 1975.0
7 TraesCS1D01G274400 chr1B 93.314 344 16 4 2899 3238 492787885 492787545 6.170000e-138 501.0
8 TraesCS1D01G274400 chr1B 88.849 278 25 4 3320 3595 36482453 36482726 1.840000e-88 337.0
9 TraesCS1D01G274400 chr1B 81.000 400 74 2 1143 1541 360808243 360808641 2.400000e-82 316.0
10 TraesCS1D01G274400 chr5D 94.815 540 25 3 3599 4137 354566831 354566294 0.000000e+00 839.0
11 TraesCS1D01G274400 chr5D 78.607 402 86 0 1143 1544 389377 388976 2.450000e-67 267.0
12 TraesCS1D01G274400 chr6D 94.630 540 27 2 3599 4137 436892220 436892758 0.000000e+00 835.0
13 TraesCS1D01G274400 chr6D 89.655 145 11 4 2552 2693 303059847 303059990 9.140000e-42 182.0
14 TraesCS1D01G274400 chr2D 94.444 540 28 1 3598 4137 271718716 271718179 0.000000e+00 830.0
15 TraesCS1D01G274400 chr2D 94.074 540 31 1 3598 4137 282969575 282969037 0.000000e+00 819.0
16 TraesCS1D01G274400 chr2D 93.625 549 31 1 3593 4137 56180101 56179553 0.000000e+00 817.0
17 TraesCS1D01G274400 chr2D 93.911 542 32 1 3596 4137 282982989 282982449 0.000000e+00 817.0
18 TraesCS1D01G274400 chr2D 89.286 280 27 3 3318 3595 9648919 9649197 8.510000e-92 348.0
19 TraesCS1D01G274400 chr7D 94.259 540 30 1 3599 4137 234316046 234315507 0.000000e+00 824.0
20 TraesCS1D01G274400 chr7D 94.249 539 30 1 3599 4137 234987948 234988485 0.000000e+00 822.0
21 TraesCS1D01G274400 chr7D 86.447 273 33 3 3317 3588 45933003 45932734 3.130000e-76 296.0
22 TraesCS1D01G274400 chr7D 85.128 195 21 6 2686 2880 53739320 53739134 4.220000e-45 193.0
23 TraesCS1D01G274400 chr7D 90.780 141 12 1 2555 2694 375400760 375400900 1.960000e-43 187.0
24 TraesCS1D01G274400 chr3D 94.107 543 28 4 3598 4137 486288241 486287700 0.000000e+00 822.0
25 TraesCS1D01G274400 chr3D 86.364 198 18 4 2684 2880 64866521 64866710 1.510000e-49 207.0
26 TraesCS1D01G274400 chr3D 89.510 143 14 1 2553 2694 170546943 170547085 3.290000e-41 180.0
27 TraesCS1D01G274400 chr5A 79.201 1101 213 12 1142 2231 272133045 272131950 0.000000e+00 750.0
28 TraesCS1D01G274400 chr5A 78.607 402 86 0 1140 1541 228156 228557 2.450000e-67 267.0
29 TraesCS1D01G274400 chr5B 78.981 1099 218 11 1142 2231 223984941 223983847 0.000000e+00 737.0
30 TraesCS1D01G274400 chr5B 88.612 281 29 3 3320 3599 272782294 272782016 5.120000e-89 339.0
31 TraesCS1D01G274400 chr5B 87.589 282 28 6 3317 3595 554591424 554591701 1.860000e-83 320.0
32 TraesCS1D01G274400 chr4B 89.680 281 28 1 3316 3595 562636878 562637158 1.410000e-94 357.0
33 TraesCS1D01G274400 chr4B 89.510 143 14 1 2553 2694 366930306 366930164 3.290000e-41 180.0
34 TraesCS1D01G274400 chr6A 87.324 284 34 2 3317 3598 615703983 615703700 1.430000e-84 324.0
35 TraesCS1D01G274400 chr4D 84.775 289 37 4 3317 3599 17764833 17764546 2.430000e-72 283.0
36 TraesCS1D01G274400 chr3B 78.765 405 85 1 1142 1545 647078355 647078759 1.900000e-68 270.0
37 TraesCS1D01G274400 chr3A 78.378 407 87 1 1140 1545 627252616 627253022 3.170000e-66 263.0
38 TraesCS1D01G274400 chr3A 91.608 143 11 1 2553 2694 208074007 208074149 3.260000e-46 196.0
39 TraesCS1D01G274400 chr3A 88.235 68 8 0 3068 3135 627253719 627253786 9.530000e-12 82.4
40 TraesCS1D01G274400 chr7A 86.010 193 21 5 2689 2880 96056999 96056812 7.010000e-48 202.0
41 TraesCS1D01G274400 chr7A 90.714 140 12 1 2556 2694 421785003 421785142 7.060000e-43 185.0
42 TraesCS1D01G274400 chr2A 85.354 198 21 5 2686 2880 693897135 693896943 9.070000e-47 198.0
43 TraesCS1D01G274400 chr2B 85.128 195 20 7 2686 2880 673956448 673956633 1.520000e-44 191.0
44 TraesCS1D01G274400 chr6B 91.304 138 9 3 2559 2694 209587388 209587524 7.060000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G274400 chr1D 370012256 370016392 4136 True 7640.000000 7640 100.000000 1 4137 1 chr1D.!!$R1 4136
1 TraesCS1D01G274400 chr1A 468605739 468608947 3208 True 4536.000000 4536 92.163000 6 3238 1 chr1A.!!$R1 3232
2 TraesCS1D01G274400 chr1B 492787545 492793287 5742 True 1498.333333 2019 92.485667 2 3238 3 chr1B.!!$R1 3236
3 TraesCS1D01G274400 chr5D 354566294 354566831 537 True 839.000000 839 94.815000 3599 4137 1 chr5D.!!$R2 538
4 TraesCS1D01G274400 chr6D 436892220 436892758 538 False 835.000000 835 94.630000 3599 4137 1 chr6D.!!$F2 538
5 TraesCS1D01G274400 chr2D 271718179 271718716 537 True 830.000000 830 94.444000 3598 4137 1 chr2D.!!$R2 539
6 TraesCS1D01G274400 chr2D 282969037 282969575 538 True 819.000000 819 94.074000 3598 4137 1 chr2D.!!$R3 539
7 TraesCS1D01G274400 chr2D 56179553 56180101 548 True 817.000000 817 93.625000 3593 4137 1 chr2D.!!$R1 544
8 TraesCS1D01G274400 chr2D 282982449 282982989 540 True 817.000000 817 93.911000 3596 4137 1 chr2D.!!$R4 541
9 TraesCS1D01G274400 chr7D 234315507 234316046 539 True 824.000000 824 94.259000 3599 4137 1 chr7D.!!$R3 538
10 TraesCS1D01G274400 chr7D 234987948 234988485 537 False 822.000000 822 94.249000 3599 4137 1 chr7D.!!$F1 538
11 TraesCS1D01G274400 chr3D 486287700 486288241 541 True 822.000000 822 94.107000 3598 4137 1 chr3D.!!$R1 539
12 TraesCS1D01G274400 chr5A 272131950 272133045 1095 True 750.000000 750 79.201000 1142 2231 1 chr5A.!!$R1 1089
13 TraesCS1D01G274400 chr5B 223983847 223984941 1094 True 737.000000 737 78.981000 1142 2231 1 chr5B.!!$R1 1089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.170561 AATCCGTCGACTTCCACTCG 59.829 55.000 14.7 0.0 0.00 4.18 F
889 902 1.134965 AGCACTCTGAACCGCTGATAC 60.135 52.381 0.0 0.0 32.33 2.24 F
1512 1533 0.036010 CAATCCAGGCCGTTCTGTCT 60.036 55.000 0.0 0.0 33.14 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1512 1533 0.320858 TTCGACCGCTGGCATACAAA 60.321 50.0 0.00 0.00 0.00 2.83 R
2802 5309 0.038599 AGATTGAGCATGCACACCCA 59.961 50.0 21.98 5.38 0.00 4.51 R
3461 6049 0.323302 TGCATGCTACCTTCGGTTCA 59.677 50.0 20.33 0.00 37.09 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.679032 CCTCCTCAACCCGTTTGATCC 60.679 57.143 0.00 0.00 43.54 3.36
50 51 0.170561 AATCCGTCGACTTCCACTCG 59.829 55.000 14.70 0.00 0.00 4.18
92 93 2.964389 GCCTCTGCTTCGATCGGC 60.964 66.667 16.41 12.36 33.53 5.54
132 133 3.418047 TCCTGAGTTCCCGAATTTTTCC 58.582 45.455 0.00 0.00 0.00 3.13
221 222 2.427753 GGGGTGAGCGGATGATCC 59.572 66.667 0.08 0.08 0.00 3.36
233 234 2.760374 GGATGATCCGAGGATGTGTTC 58.240 52.381 9.69 0.00 34.60 3.18
302 306 2.700722 TTGCTTTTGTGGGGGTTTTC 57.299 45.000 0.00 0.00 0.00 2.29
307 311 3.625764 GCTTTTGTGGGGGTTTTCTTTTC 59.374 43.478 0.00 0.00 0.00 2.29
341 345 7.041372 CCTCCAAATGTTTTTCGTCTTCTAGAA 60.041 37.037 4.81 4.81 0.00 2.10
342 346 8.215926 TCCAAATGTTTTTCGTCTTCTAGAAA 57.784 30.769 6.63 0.00 34.91 2.52
343 347 8.126700 TCCAAATGTTTTTCGTCTTCTAGAAAC 58.873 33.333 6.63 7.10 36.26 2.78
344 348 7.111593 CCAAATGTTTTTCGTCTTCTAGAAACG 59.888 37.037 22.94 22.94 36.26 3.60
345 349 7.473027 AATGTTTTTCGTCTTCTAGAAACGA 57.527 32.000 25.42 25.42 43.06 3.85
449 457 8.900983 TTTTTAATGCTTCCATGCTTAAACTT 57.099 26.923 0.00 0.00 31.82 2.66
474 482 3.387699 TGTGACCCGTGATGTCATGATAT 59.612 43.478 4.40 4.40 43.98 1.63
515 523 2.116238 TGGGATCGGGAAAGACTAAGG 58.884 52.381 0.00 0.00 0.00 2.69
520 528 1.223763 GGGAAAGACTAAGGGCCCG 59.776 63.158 18.44 4.53 0.00 6.13
538 546 2.288825 CCCGAGTTTGTCTTACTCTGCA 60.289 50.000 0.00 0.00 39.86 4.41
539 547 3.589988 CCGAGTTTGTCTTACTCTGCAT 58.410 45.455 0.00 0.00 39.86 3.96
540 548 3.997021 CCGAGTTTGTCTTACTCTGCATT 59.003 43.478 0.00 0.00 39.86 3.56
643 651 1.598882 GGAATTAGGCCAGCTAGTGC 58.401 55.000 5.01 0.00 40.05 4.40
661 669 7.625553 GCTAGTGCTGTTATAAACTCTTGATG 58.374 38.462 0.00 0.00 36.03 3.07
665 673 9.066892 AGTGCTGTTATAAACTCTTGATGAAAA 57.933 29.630 0.00 0.00 0.00 2.29
666 674 9.677567 GTGCTGTTATAAACTCTTGATGAAAAA 57.322 29.630 0.00 0.00 0.00 1.94
732 745 8.015658 ACTGAATTCTTTAACACGTTATGCTTC 58.984 33.333 7.05 0.00 0.00 3.86
744 757 7.728895 ACACGTTATGCTTCAAAAATTAATGC 58.271 30.769 0.00 0.00 0.00 3.56
747 760 7.386299 ACGTTATGCTTCAAAAATTAATGCCAA 59.614 29.630 0.00 0.00 0.00 4.52
748 761 8.226448 CGTTATGCTTCAAAAATTAATGCCAAA 58.774 29.630 0.00 0.00 0.00 3.28
782 795 9.597681 ATTGATGCTTGGATTATAGGAAATTCT 57.402 29.630 0.00 0.00 0.00 2.40
783 796 9.425248 TTGATGCTTGGATTATAGGAAATTCTT 57.575 29.630 0.00 0.00 0.00 2.52
784 797 9.425248 TGATGCTTGGATTATAGGAAATTCTTT 57.575 29.630 0.00 0.00 0.00 2.52
795 808 4.866921 AGGAAATTCTTTAACACGTTGCC 58.133 39.130 0.00 0.00 0.00 4.52
803 816 6.913873 TCTTTAACACGTTGCCTATAATCC 57.086 37.500 0.00 0.00 0.00 3.01
808 821 3.069016 ACACGTTGCCTATAATCCGATGA 59.931 43.478 0.00 0.00 0.00 2.92
832 845 4.166725 TGTTCCTCAATTGCTCTATCCCAT 59.833 41.667 0.00 0.00 0.00 4.00
843 856 3.577848 GCTCTATCCCATCAGATGACAGT 59.422 47.826 12.41 0.00 0.00 3.55
846 859 6.070881 GCTCTATCCCATCAGATGACAGTTAT 60.071 42.308 12.41 0.00 0.00 1.89
853 866 7.508977 TCCCATCAGATGACAGTTATATGTGTA 59.491 37.037 12.41 0.00 32.25 2.90
869 882 9.562408 TTATATGTGTACCTTTGTCACTTTCAA 57.438 29.630 0.00 0.00 33.82 2.69
889 902 1.134965 AGCACTCTGAACCGCTGATAC 60.135 52.381 0.00 0.00 32.33 2.24
890 903 1.927895 CACTCTGAACCGCTGATACC 58.072 55.000 0.00 0.00 0.00 2.73
907 920 6.068461 TGATACCATGGGTTTACTTGCTTA 57.932 37.500 18.09 0.00 37.09 3.09
908 921 5.883673 TGATACCATGGGTTTACTTGCTTAC 59.116 40.000 18.09 0.00 37.09 2.34
909 922 4.107127 ACCATGGGTTTACTTGCTTACA 57.893 40.909 18.09 0.00 27.29 2.41
932 949 6.793492 AGAAGCATTTCTGACAGTTTAGAC 57.207 37.500 1.59 0.00 42.04 2.59
1062 1079 2.958355 CACTGGAATGGTCAAGGTTGTT 59.042 45.455 0.00 0.00 0.00 2.83
1063 1080 4.141287 CACTGGAATGGTCAAGGTTGTTA 58.859 43.478 0.00 0.00 0.00 2.41
1064 1081 4.766891 CACTGGAATGGTCAAGGTTGTTAT 59.233 41.667 0.00 0.00 0.00 1.89
1065 1082 5.943416 CACTGGAATGGTCAAGGTTGTTATA 59.057 40.000 0.00 0.00 0.00 0.98
1128 1148 5.551233 CTCTCCCAAACTAACTGATCACAA 58.449 41.667 0.00 0.00 0.00 3.33
1176 1197 2.903855 GATGATGCACCCAGGGCG 60.904 66.667 4.91 0.00 0.00 6.13
1356 1377 4.598022 TGGAGAAAATATGGCATCACACA 58.402 39.130 1.65 0.00 0.00 3.72
1512 1533 0.036010 CAATCCAGGCCGTTCTGTCT 60.036 55.000 0.00 0.00 33.14 3.41
1547 1568 3.554337 GGTCGAACAACTGGTATGTCTGT 60.554 47.826 0.00 0.00 0.00 3.41
1553 1574 0.818296 ACTGGTATGTCTGTCGCCTC 59.182 55.000 0.00 0.00 0.00 4.70
1559 4063 1.291877 ATGTCTGTCGCCTCGTTTGC 61.292 55.000 0.00 0.00 0.00 3.68
1568 4072 0.100503 GCCTCGTTTGCAACAGTTGT 59.899 50.000 14.88 0.00 0.00 3.32
1570 4074 1.400142 CCTCGTTTGCAACAGTTGTCA 59.600 47.619 14.88 10.20 0.00 3.58
1591 4095 4.080356 TCACTGAAGTTCATTGGATAGGGG 60.080 45.833 19.63 2.46 29.31 4.79
1592 4096 3.217626 CTGAAGTTCATTGGATAGGGGC 58.782 50.000 5.91 0.00 0.00 5.80
1593 4097 2.580322 TGAAGTTCATTGGATAGGGGCA 59.420 45.455 0.08 0.00 0.00 5.36
1594 4098 3.217626 GAAGTTCATTGGATAGGGGCAG 58.782 50.000 0.00 0.00 0.00 4.85
1605 4111 3.769300 GGATAGGGGCAGTGACAATTTTT 59.231 43.478 0.00 0.00 0.00 1.94
1625 4131 2.584835 TTCCTGCAGGTATTGTGCTT 57.415 45.000 31.58 0.00 41.78 3.91
1745 4251 7.606349 TCACGGATAATCTAATGAAGATCCTG 58.394 38.462 0.00 0.00 44.56 3.86
1940 4446 0.895559 CAGAAAGGTTCAGGTGCCCC 60.896 60.000 0.00 0.00 0.00 5.80
2012 4518 3.938963 ACGAAGCGACATACAATTCCATT 59.061 39.130 0.00 0.00 0.00 3.16
2027 4533 6.250819 CAATTCCATTATGAAGTGTGACGTC 58.749 40.000 9.11 9.11 36.03 4.34
2252 4758 6.329460 AGGTTAGTATATTTCCCCCTCTCAAC 59.671 42.308 0.00 0.00 0.00 3.18
2295 4801 7.760340 ACATTACTCCTATCTTTTCTCGACAAC 59.240 37.037 0.00 0.00 0.00 3.32
2711 5218 4.374843 TTTTCTTCGCCTACGTATAGCA 57.625 40.909 15.55 3.29 41.18 3.49
2773 5280 2.278531 GCGTGTGTTGGTGTTGGC 60.279 61.111 0.00 0.00 0.00 4.52
2788 5295 0.677731 TTGGCTGTGTGCATCCTAGC 60.678 55.000 0.00 0.00 45.15 3.42
2789 5296 2.176273 GGCTGTGTGCATCCTAGCG 61.176 63.158 0.00 0.00 45.15 4.26
2795 5302 0.752658 TGTGCATCCTAGCGCTATGT 59.247 50.000 19.19 3.99 44.96 2.29
2802 5309 0.962489 CCTAGCGCTATGTACAGGCT 59.038 55.000 19.19 16.26 37.73 4.58
2832 5339 4.277258 CATGCTCAATCTGTTTGTATCGC 58.723 43.478 0.00 0.00 36.65 4.58
2865 5372 9.321590 GCTTCATTTTGAGCAAATAAAATTCAC 57.678 29.630 0.00 0.00 35.07 3.18
2882 5389 4.577834 TTCACCCTTTGTCGAAAAATCC 57.422 40.909 0.15 0.00 0.00 3.01
2897 5474 8.385111 GTCGAAAAATCCTATATTTGTGAACGA 58.615 33.333 0.00 0.00 0.00 3.85
2921 5506 4.963628 AGGGAGTATCTTCCAAGAGGTTAC 59.036 45.833 0.00 0.00 38.66 2.50
3034 5620 1.669760 GATCCGGTGCGTTGTTCCA 60.670 57.895 0.00 0.00 0.00 3.53
3109 5695 1.331138 GAGTACGATGAGTCTGGTCCG 59.669 57.143 0.00 0.00 0.00 4.79
3193 5780 8.552083 TTGCTGCCAAGAATATATAGTACATG 57.448 34.615 0.00 0.00 0.00 3.21
3194 5781 7.105588 TGCTGCCAAGAATATATAGTACATGG 58.894 38.462 0.00 4.75 0.00 3.66
3195 5782 7.038373 TGCTGCCAAGAATATATAGTACATGGA 60.038 37.037 10.76 0.00 0.00 3.41
3228 5816 9.216117 GGTTAGTGTTTTGTAGAAGATGTGTAT 57.784 33.333 0.00 0.00 0.00 2.29
3234 5822 8.154203 TGTTTTGTAGAAGATGTGTATCCTCAA 58.846 33.333 0.00 0.00 33.64 3.02
3238 5826 4.775236 AGAAGATGTGTATCCTCAAAGGC 58.225 43.478 0.00 0.00 34.61 4.35
3239 5827 4.225942 AGAAGATGTGTATCCTCAAAGGCA 59.774 41.667 0.00 0.00 34.61 4.75
3240 5828 3.878778 AGATGTGTATCCTCAAAGGCAC 58.121 45.455 0.00 0.00 34.61 5.01
3241 5829 3.264193 AGATGTGTATCCTCAAAGGCACA 59.736 43.478 7.19 7.19 39.21 4.57
3242 5830 3.500448 TGTGTATCCTCAAAGGCACAA 57.500 42.857 3.39 0.00 34.44 3.33
3243 5831 4.032960 TGTGTATCCTCAAAGGCACAAT 57.967 40.909 3.39 0.00 34.44 2.71
3244 5832 5.172687 TGTGTATCCTCAAAGGCACAATA 57.827 39.130 3.39 0.00 34.44 1.90
3245 5833 5.185454 TGTGTATCCTCAAAGGCACAATAG 58.815 41.667 3.39 0.00 34.44 1.73
3246 5834 4.035675 GTGTATCCTCAAAGGCACAATAGC 59.964 45.833 2.92 0.00 33.70 2.97
3247 5835 2.877097 TCCTCAAAGGCACAATAGCA 57.123 45.000 0.00 0.00 34.61 3.49
3248 5836 3.370840 TCCTCAAAGGCACAATAGCAT 57.629 42.857 0.00 0.00 34.61 3.79
3249 5837 3.018856 TCCTCAAAGGCACAATAGCATG 58.981 45.455 0.00 0.00 34.61 4.06
3250 5838 2.100252 CCTCAAAGGCACAATAGCATGG 59.900 50.000 0.00 0.00 35.83 3.66
3251 5839 1.477700 TCAAAGGCACAATAGCATGGC 59.522 47.619 0.00 0.00 41.52 4.40
3252 5840 0.826062 AAAGGCACAATAGCATGGCC 59.174 50.000 0.00 0.00 44.92 5.36
3253 5841 4.265206 GGCACAATAGCATGGCCT 57.735 55.556 3.32 0.00 41.39 5.19
3254 5842 2.508361 GGCACAATAGCATGGCCTT 58.492 52.632 3.32 0.00 41.39 4.35
3255 5843 0.103572 GGCACAATAGCATGGCCTTG 59.896 55.000 14.22 14.22 41.39 3.61
3256 5844 0.529119 GCACAATAGCATGGCCTTGC 60.529 55.000 31.02 31.02 43.09 4.01
3257 5845 0.818938 CACAATAGCATGGCCTTGCA 59.181 50.000 36.66 25.39 45.23 4.08
3258 5846 1.411246 CACAATAGCATGGCCTTGCAT 59.589 47.619 36.66 26.22 45.23 3.96
3259 5847 1.411246 ACAATAGCATGGCCTTGCATG 59.589 47.619 36.66 31.48 45.23 4.06
3260 5848 1.045407 AATAGCATGGCCTTGCATGG 58.955 50.000 36.66 14.22 45.23 3.66
3267 5855 3.860717 GCCTTGCATGGCGTTTTC 58.139 55.556 25.94 2.09 43.74 2.29
3268 5856 1.737735 GCCTTGCATGGCGTTTTCC 60.738 57.895 25.94 1.37 43.74 3.13
3269 5857 1.966762 CCTTGCATGGCGTTTTCCT 59.033 52.632 5.58 0.00 0.00 3.36
3270 5858 0.388907 CCTTGCATGGCGTTTTCCTG 60.389 55.000 5.58 0.00 0.00 3.86
3271 5859 1.006337 TTGCATGGCGTTTTCCTGC 60.006 52.632 0.00 0.00 33.68 4.85
3272 5860 1.462731 TTGCATGGCGTTTTCCTGCT 61.463 50.000 0.00 0.00 33.98 4.24
3273 5861 1.444895 GCATGGCGTTTTCCTGCTG 60.445 57.895 0.00 0.00 31.80 4.41
3274 5862 1.959085 CATGGCGTTTTCCTGCTGT 59.041 52.632 0.00 0.00 0.00 4.40
3275 5863 1.164411 CATGGCGTTTTCCTGCTGTA 58.836 50.000 0.00 0.00 0.00 2.74
3276 5864 1.745087 CATGGCGTTTTCCTGCTGTAT 59.255 47.619 0.00 0.00 0.00 2.29
3277 5865 1.164411 TGGCGTTTTCCTGCTGTATG 58.836 50.000 0.00 0.00 0.00 2.39
3278 5866 1.271108 TGGCGTTTTCCTGCTGTATGA 60.271 47.619 0.00 0.00 0.00 2.15
3279 5867 1.810151 GGCGTTTTCCTGCTGTATGAA 59.190 47.619 0.00 0.00 0.00 2.57
3280 5868 2.227865 GGCGTTTTCCTGCTGTATGAAA 59.772 45.455 0.00 0.00 0.00 2.69
3281 5869 3.119495 GGCGTTTTCCTGCTGTATGAAAT 60.119 43.478 0.00 0.00 0.00 2.17
3282 5870 4.095782 GGCGTTTTCCTGCTGTATGAAATA 59.904 41.667 0.00 0.00 0.00 1.40
3283 5871 5.392595 GGCGTTTTCCTGCTGTATGAAATAA 60.393 40.000 0.00 0.00 0.00 1.40
3284 5872 6.265577 GCGTTTTCCTGCTGTATGAAATAAT 58.734 36.000 0.00 0.00 0.00 1.28
3285 5873 6.197096 GCGTTTTCCTGCTGTATGAAATAATG 59.803 38.462 0.00 0.00 0.00 1.90
3286 5874 7.471721 CGTTTTCCTGCTGTATGAAATAATGA 58.528 34.615 0.00 0.00 0.00 2.57
3287 5875 7.967854 CGTTTTCCTGCTGTATGAAATAATGAA 59.032 33.333 0.00 0.00 0.00 2.57
3288 5876 9.807649 GTTTTCCTGCTGTATGAAATAATGAAT 57.192 29.630 0.00 0.00 0.00 2.57
3289 5877 9.806203 TTTTCCTGCTGTATGAAATAATGAATG 57.194 29.630 0.00 0.00 0.00 2.67
3290 5878 7.514784 TCCTGCTGTATGAAATAATGAATGG 57.485 36.000 0.00 0.00 0.00 3.16
3291 5879 7.289310 TCCTGCTGTATGAAATAATGAATGGA 58.711 34.615 0.00 0.00 0.00 3.41
3292 5880 7.779326 TCCTGCTGTATGAAATAATGAATGGAA 59.221 33.333 0.00 0.00 0.00 3.53
3293 5881 7.864379 CCTGCTGTATGAAATAATGAATGGAAC 59.136 37.037 0.00 0.00 0.00 3.62
3308 5896 8.765488 ATGAATGGAACATATGTGTATTCCAA 57.235 30.769 24.10 12.94 44.35 3.53
3309 5897 8.586879 TGAATGGAACATATGTGTATTCCAAA 57.413 30.769 24.10 13.86 44.35 3.28
3310 5898 8.465999 TGAATGGAACATATGTGTATTCCAAAC 58.534 33.333 24.10 20.41 44.35 2.93
3311 5899 6.429791 TGGAACATATGTGTATTCCAAACG 57.570 37.500 20.03 0.00 40.55 3.60
3312 5900 5.163703 TGGAACATATGTGTATTCCAAACGC 60.164 40.000 20.03 0.00 40.55 4.84
3313 5901 5.065988 GGAACATATGTGTATTCCAAACGCT 59.934 40.000 16.27 0.00 37.67 5.07
3314 5902 5.484173 ACATATGTGTATTCCAAACGCTG 57.516 39.130 7.78 0.00 36.63 5.18
3315 5903 2.919666 ATGTGTATTCCAAACGCTGC 57.080 45.000 0.00 0.00 0.00 5.25
3316 5904 0.878416 TGTGTATTCCAAACGCTGCC 59.122 50.000 0.00 0.00 0.00 4.85
3317 5905 1.165270 GTGTATTCCAAACGCTGCCT 58.835 50.000 0.00 0.00 0.00 4.75
3318 5906 2.289756 TGTGTATTCCAAACGCTGCCTA 60.290 45.455 0.00 0.00 0.00 3.93
3319 5907 2.745281 GTGTATTCCAAACGCTGCCTAA 59.255 45.455 0.00 0.00 0.00 2.69
3320 5908 3.006940 TGTATTCCAAACGCTGCCTAAG 58.993 45.455 0.00 0.00 0.00 2.18
3321 5909 1.463674 ATTCCAAACGCTGCCTAAGG 58.536 50.000 0.00 0.00 0.00 2.69
3322 5910 0.608035 TTCCAAACGCTGCCTAAGGG 60.608 55.000 0.00 0.00 44.33 3.95
3339 5927 1.594310 GGCATCTCTAGCCGATCCC 59.406 63.158 0.00 0.00 43.15 3.85
3340 5928 0.902516 GGCATCTCTAGCCGATCCCT 60.903 60.000 0.00 0.00 43.15 4.20
3341 5929 0.972883 GCATCTCTAGCCGATCCCTT 59.027 55.000 0.00 0.00 0.00 3.95
3342 5930 2.171840 GCATCTCTAGCCGATCCCTTA 58.828 52.381 0.00 0.00 0.00 2.69
3343 5931 2.763448 GCATCTCTAGCCGATCCCTTAT 59.237 50.000 0.00 0.00 0.00 1.73
3344 5932 3.954904 GCATCTCTAGCCGATCCCTTATA 59.045 47.826 0.00 0.00 0.00 0.98
3345 5933 4.402793 GCATCTCTAGCCGATCCCTTATAA 59.597 45.833 0.00 0.00 0.00 0.98
3346 5934 5.451242 GCATCTCTAGCCGATCCCTTATAAG 60.451 48.000 5.43 5.43 0.00 1.73
3347 5935 5.258216 TCTCTAGCCGATCCCTTATAAGT 57.742 43.478 11.50 0.00 0.00 2.24
3348 5936 5.642165 TCTCTAGCCGATCCCTTATAAGTT 58.358 41.667 11.50 0.00 0.00 2.66
3349 5937 5.477291 TCTCTAGCCGATCCCTTATAAGTTG 59.523 44.000 11.50 2.72 0.00 3.16
3350 5938 5.391256 TCTAGCCGATCCCTTATAAGTTGA 58.609 41.667 11.50 7.87 0.00 3.18
3351 5939 4.338379 AGCCGATCCCTTATAAGTTGAC 57.662 45.455 11.50 0.46 0.00 3.18
3352 5940 3.057734 GCCGATCCCTTATAAGTTGACG 58.942 50.000 11.50 10.78 0.00 4.35
3353 5941 3.650139 CCGATCCCTTATAAGTTGACGG 58.350 50.000 11.50 15.01 0.00 4.79
3354 5942 3.319972 CCGATCCCTTATAAGTTGACGGA 59.680 47.826 22.18 16.46 39.11 4.69
3355 5943 4.296690 CGATCCCTTATAAGTTGACGGAC 58.703 47.826 11.50 5.06 0.00 4.79
3356 5944 4.037684 CGATCCCTTATAAGTTGACGGACT 59.962 45.833 11.50 1.92 0.00 3.85
3357 5945 5.240183 CGATCCCTTATAAGTTGACGGACTA 59.760 44.000 11.50 0.00 0.00 2.59
3358 5946 6.238842 CGATCCCTTATAAGTTGACGGACTAA 60.239 42.308 11.50 0.00 0.00 2.24
3359 5947 6.855763 TCCCTTATAAGTTGACGGACTAAA 57.144 37.500 11.50 0.00 0.00 1.85
3360 5948 7.243604 TCCCTTATAAGTTGACGGACTAAAA 57.756 36.000 11.50 0.00 0.00 1.52
3361 5949 7.099120 TCCCTTATAAGTTGACGGACTAAAAC 58.901 38.462 11.50 0.00 0.00 2.43
3362 5950 6.314648 CCCTTATAAGTTGACGGACTAAAACC 59.685 42.308 11.50 0.00 0.00 3.27
3363 5951 6.314648 CCTTATAAGTTGACGGACTAAAACCC 59.685 42.308 11.50 0.00 0.00 4.11
3364 5952 3.851458 AAGTTGACGGACTAAAACCCT 57.149 42.857 0.00 0.00 0.00 4.34
3365 5953 3.851458 AGTTGACGGACTAAAACCCTT 57.149 42.857 0.00 0.00 0.00 3.95
3366 5954 4.961438 AGTTGACGGACTAAAACCCTTA 57.039 40.909 0.00 0.00 0.00 2.69
3367 5955 4.891260 AGTTGACGGACTAAAACCCTTAG 58.109 43.478 0.00 0.00 0.00 2.18
3368 5956 4.346127 AGTTGACGGACTAAAACCCTTAGT 59.654 41.667 0.00 0.00 37.89 2.24
3369 5957 5.539955 AGTTGACGGACTAAAACCCTTAGTA 59.460 40.000 0.00 0.00 35.54 1.82
3370 5958 5.649782 TGACGGACTAAAACCCTTAGTAG 57.350 43.478 0.00 0.00 35.54 2.57
3371 5959 4.463891 TGACGGACTAAAACCCTTAGTAGG 59.536 45.833 0.00 0.00 41.60 3.18
3414 6002 4.569719 TTTTTCTTTCTAGCCGATCCCT 57.430 40.909 0.00 0.00 0.00 4.20
3415 6003 4.569719 TTTTCTTTCTAGCCGATCCCTT 57.430 40.909 0.00 0.00 0.00 3.95
3416 6004 5.687166 TTTTCTTTCTAGCCGATCCCTTA 57.313 39.130 0.00 0.00 0.00 2.69
3417 6005 5.687166 TTTCTTTCTAGCCGATCCCTTAA 57.313 39.130 0.00 0.00 0.00 1.85
3418 6006 5.687166 TTCTTTCTAGCCGATCCCTTAAA 57.313 39.130 0.00 0.00 0.00 1.52
3419 6007 5.019785 TCTTTCTAGCCGATCCCTTAAAC 57.980 43.478 0.00 0.00 0.00 2.01
3420 6008 4.715297 TCTTTCTAGCCGATCCCTTAAACT 59.285 41.667 0.00 0.00 0.00 2.66
3421 6009 5.189145 TCTTTCTAGCCGATCCCTTAAACTT 59.811 40.000 0.00 0.00 0.00 2.66
3422 6010 6.381994 TCTTTCTAGCCGATCCCTTAAACTTA 59.618 38.462 0.00 0.00 0.00 2.24
3423 6011 6.549433 TTCTAGCCGATCCCTTAAACTTAA 57.451 37.500 0.00 0.00 0.00 1.85
3424 6012 5.910614 TCTAGCCGATCCCTTAAACTTAAC 58.089 41.667 0.00 0.00 0.00 2.01
3425 6013 3.528532 AGCCGATCCCTTAAACTTAACG 58.471 45.455 0.00 0.00 0.00 3.18
3426 6014 2.610833 GCCGATCCCTTAAACTTAACGG 59.389 50.000 0.00 0.00 40.60 4.44
3427 6015 3.679639 GCCGATCCCTTAAACTTAACGGA 60.680 47.826 0.00 7.18 40.16 4.69
3428 6016 4.117685 CCGATCCCTTAAACTTAACGGAG 58.882 47.826 0.00 0.00 40.16 4.63
3430 6018 5.163519 CCGATCCCTTAAACTTAACGGAGTA 60.164 44.000 0.00 0.00 45.00 2.59
3431 6019 6.332630 CGATCCCTTAAACTTAACGGAGTAA 58.667 40.000 6.24 0.00 45.00 2.24
3432 6020 6.813152 CGATCCCTTAAACTTAACGGAGTAAA 59.187 38.462 6.24 0.00 45.00 2.01
3433 6021 7.201470 CGATCCCTTAAACTTAACGGAGTAAAC 60.201 40.741 6.24 0.00 45.00 2.01
3434 6022 7.066307 TCCCTTAAACTTAACGGAGTAAACT 57.934 36.000 0.00 0.00 45.00 2.66
3435 6023 7.508687 TCCCTTAAACTTAACGGAGTAAACTT 58.491 34.615 0.00 0.00 45.00 2.66
3436 6024 7.657354 TCCCTTAAACTTAACGGAGTAAACTTC 59.343 37.037 0.00 0.00 45.00 3.01
3437 6025 7.442062 CCCTTAAACTTAACGGAGTAAACTTCA 59.558 37.037 0.00 0.00 45.00 3.02
3438 6026 8.829612 CCTTAAACTTAACGGAGTAAACTTCAA 58.170 33.333 0.00 0.00 45.00 2.69
3442 6030 9.511144 AAACTTAACGGAGTAAACTTCAAATTG 57.489 29.630 0.00 0.00 45.00 2.32
3443 6031 8.441312 ACTTAACGGAGTAAACTTCAAATTGA 57.559 30.769 0.00 0.00 45.00 2.57
3444 6032 9.063615 ACTTAACGGAGTAAACTTCAAATTGAT 57.936 29.630 0.00 0.00 45.00 2.57
3445 6033 9.543018 CTTAACGGAGTAAACTTCAAATTGATC 57.457 33.333 0.00 0.00 45.00 2.92
3446 6034 7.504924 AACGGAGTAAACTTCAAATTGATCA 57.495 32.000 0.00 0.00 45.00 2.92
3447 6035 7.504924 ACGGAGTAAACTTCAAATTGATCAA 57.495 32.000 11.26 11.26 41.94 2.57
3448 6036 7.936584 ACGGAGTAAACTTCAAATTGATCAAA 58.063 30.769 13.09 0.00 41.94 2.69
3449 6037 7.860872 ACGGAGTAAACTTCAAATTGATCAAAC 59.139 33.333 13.09 1.87 41.94 2.93
3450 6038 8.076178 CGGAGTAAACTTCAAATTGATCAAACT 58.924 33.333 13.09 7.01 0.00 2.66
3451 6039 9.399403 GGAGTAAACTTCAAATTGATCAAACTC 57.601 33.333 13.09 15.00 0.00 3.01
3452 6040 9.950680 GAGTAAACTTCAAATTGATCAAACTCA 57.049 29.630 13.09 0.00 0.00 3.41
3456 6044 7.704789 ACTTCAAATTGATCAAACTCAAAGC 57.295 32.000 13.09 0.00 38.55 3.51
3457 6045 7.267128 ACTTCAAATTGATCAAACTCAAAGCA 58.733 30.769 13.09 0.00 38.55 3.91
3458 6046 7.765360 ACTTCAAATTGATCAAACTCAAAGCAA 59.235 29.630 13.09 0.00 38.55 3.91
3459 6047 8.665643 TTCAAATTGATCAAACTCAAAGCAAT 57.334 26.923 13.09 0.00 38.55 3.56
3460 6048 8.665643 TCAAATTGATCAAACTCAAAGCAATT 57.334 26.923 13.09 0.00 38.55 2.32
3461 6049 9.111613 TCAAATTGATCAAACTCAAAGCAATTT 57.888 25.926 13.09 0.00 42.04 1.82
3462 6050 9.165014 CAAATTGATCAAACTCAAAGCAATTTG 57.835 29.630 13.09 17.90 46.45 2.32
3463 6051 8.665643 AATTGATCAAACTCAAAGCAATTTGA 57.334 26.923 13.09 3.62 43.23 2.69
3464 6052 8.665643 ATTGATCAAACTCAAAGCAATTTGAA 57.334 26.923 13.09 0.00 42.57 2.69
3465 6053 7.467557 TGATCAAACTCAAAGCAATTTGAAC 57.532 32.000 0.00 1.51 42.57 3.18
3466 6054 6.479660 TGATCAAACTCAAAGCAATTTGAACC 59.520 34.615 0.00 0.16 42.57 3.62
3467 6055 4.803088 TCAAACTCAAAGCAATTTGAACCG 59.197 37.500 0.00 0.00 40.07 4.44
3468 6056 4.647424 AACTCAAAGCAATTTGAACCGA 57.353 36.364 0.00 0.00 40.07 4.69
3469 6057 4.647424 ACTCAAAGCAATTTGAACCGAA 57.353 36.364 0.00 0.00 40.07 4.30
3470 6058 4.610945 ACTCAAAGCAATTTGAACCGAAG 58.389 39.130 0.00 0.00 40.07 3.79
3471 6059 3.976169 TCAAAGCAATTTGAACCGAAGG 58.024 40.909 0.00 0.00 44.59 3.46
3488 6076 4.980590 CGAAGGTAGCATGCATTTAAACA 58.019 39.130 21.98 0.00 0.00 2.83
3489 6077 5.581605 CGAAGGTAGCATGCATTTAAACAT 58.418 37.500 21.98 2.71 0.00 2.71
3490 6078 6.724263 CGAAGGTAGCATGCATTTAAACATA 58.276 36.000 21.98 0.00 0.00 2.29
3491 6079 7.192913 CGAAGGTAGCATGCATTTAAACATAA 58.807 34.615 21.98 0.00 0.00 1.90
3492 6080 7.700234 CGAAGGTAGCATGCATTTAAACATAAA 59.300 33.333 21.98 0.00 0.00 1.40
3493 6081 8.702163 AAGGTAGCATGCATTTAAACATAAAC 57.298 30.769 21.98 0.00 0.00 2.01
3494 6082 7.835822 AGGTAGCATGCATTTAAACATAAACA 58.164 30.769 21.98 0.00 0.00 2.83
3495 6083 8.477256 AGGTAGCATGCATTTAAACATAAACAT 58.523 29.630 21.98 0.00 0.00 2.71
3496 6084 9.743057 GGTAGCATGCATTTAAACATAAACATA 57.257 29.630 21.98 0.00 0.00 2.29
3514 6102 9.988815 ATAAACATAAATAGTTTTGCACAACCA 57.011 25.926 12.02 0.00 39.65 3.67
3515 6103 8.723942 AAACATAAATAGTTTTGCACAACCAA 57.276 26.923 12.02 1.71 35.81 3.67
3516 6104 8.723942 AACATAAATAGTTTTGCACAACCAAA 57.276 26.923 12.02 0.00 33.21 3.28
3517 6105 8.137210 ACATAAATAGTTTTGCACAACCAAAC 57.863 30.769 12.02 7.42 34.68 2.93
3518 6106 7.766278 ACATAAATAGTTTTGCACAACCAAACA 59.234 29.630 12.02 0.05 34.68 2.83
3519 6107 8.772705 CATAAATAGTTTTGCACAACCAAACAT 58.227 29.630 12.02 2.17 34.68 2.71
3520 6108 9.988815 ATAAATAGTTTTGCACAACCAAACATA 57.011 25.926 12.02 0.00 34.68 2.29
3521 6109 8.723942 AAATAGTTTTGCACAACCAAACATAA 57.276 26.923 12.02 0.00 34.68 1.90
3522 6110 8.723942 AATAGTTTTGCACAACCAAACATAAA 57.276 26.923 12.02 0.00 34.68 1.40
3523 6111 8.723942 ATAGTTTTGCACAACCAAACATAAAA 57.276 26.923 12.02 0.00 34.68 1.52
3524 6112 6.836953 AGTTTTGCACAACCAAACATAAAAC 58.163 32.000 12.02 3.20 37.16 2.43
3525 6113 6.428159 AGTTTTGCACAACCAAACATAAAACA 59.572 30.769 12.02 0.00 38.52 2.83
3526 6114 5.786401 TTGCACAACCAAACATAAAACAC 57.214 34.783 0.00 0.00 0.00 3.32
3527 6115 4.820897 TGCACAACCAAACATAAAACACA 58.179 34.783 0.00 0.00 0.00 3.72
3528 6116 5.237815 TGCACAACCAAACATAAAACACAA 58.762 33.333 0.00 0.00 0.00 3.33
3529 6117 5.700832 TGCACAACCAAACATAAAACACAAA 59.299 32.000 0.00 0.00 0.00 2.83
3530 6118 6.372659 TGCACAACCAAACATAAAACACAAAT 59.627 30.769 0.00 0.00 0.00 2.32
3531 6119 7.094634 TGCACAACCAAACATAAAACACAAATT 60.095 29.630 0.00 0.00 0.00 1.82
3532 6120 7.752686 GCACAACCAAACATAAAACACAAATTT 59.247 29.630 0.00 0.00 0.00 1.82
3564 6152 8.463456 AGCTAAGCTTAACTAAACTACTTTCG 57.537 34.615 7.63 0.00 33.89 3.46
3565 6153 7.544915 AGCTAAGCTTAACTAAACTACTTTCGG 59.455 37.037 7.63 0.00 33.89 4.30
3566 6154 7.330454 GCTAAGCTTAACTAAACTACTTTCGGT 59.670 37.037 7.74 0.00 0.00 4.69
3567 6155 7.649370 AAGCTTAACTAAACTACTTTCGGTC 57.351 36.000 0.00 0.00 0.00 4.79
3568 6156 5.860716 AGCTTAACTAAACTACTTTCGGTCG 59.139 40.000 0.00 0.00 0.00 4.79
3569 6157 5.858581 GCTTAACTAAACTACTTTCGGTCGA 59.141 40.000 0.00 0.00 0.00 4.20
3570 6158 6.363357 GCTTAACTAAACTACTTTCGGTCGAA 59.637 38.462 1.33 1.33 0.00 3.71
3571 6159 7.062722 GCTTAACTAAACTACTTTCGGTCGAAT 59.937 37.037 6.63 0.00 33.79 3.34
3572 6160 6.701432 AACTAAACTACTTTCGGTCGAATG 57.299 37.500 14.56 14.56 35.99 2.67
3573 6161 5.776744 ACTAAACTACTTTCGGTCGAATGT 58.223 37.500 21.86 21.86 42.50 2.71
3574 6162 4.985044 AAACTACTTTCGGTCGAATGTG 57.015 40.909 24.79 18.80 40.88 3.21
3575 6163 3.928727 ACTACTTTCGGTCGAATGTGA 57.071 42.857 24.79 13.48 40.88 3.58
3576 6164 3.834610 ACTACTTTCGGTCGAATGTGAG 58.165 45.455 24.79 20.17 40.88 3.51
3577 6165 2.080286 ACTTTCGGTCGAATGTGAGG 57.920 50.000 19.04 0.00 39.80 3.86
3578 6166 1.343465 ACTTTCGGTCGAATGTGAGGT 59.657 47.619 19.04 0.00 39.80 3.85
3579 6167 1.993370 CTTTCGGTCGAATGTGAGGTC 59.007 52.381 6.63 0.00 33.79 3.85
3580 6168 0.109458 TTCGGTCGAATGTGAGGTCG 60.109 55.000 1.33 0.00 38.62 4.79
3581 6169 0.956902 TCGGTCGAATGTGAGGTCGA 60.957 55.000 0.00 0.00 43.61 4.20
3582 6170 0.523546 CGGTCGAATGTGAGGTCGAG 60.524 60.000 0.00 0.00 46.18 4.04
3583 6171 2.654939 GTCGAATGTGAGGTCGAGC 58.345 57.895 6.48 6.48 46.18 5.03
3584 6172 0.802607 GTCGAATGTGAGGTCGAGCC 60.803 60.000 11.73 3.31 46.18 4.70
3585 6173 1.215382 CGAATGTGAGGTCGAGCCA 59.785 57.895 11.73 6.34 39.64 4.75
3586 6174 0.389817 CGAATGTGAGGTCGAGCCAA 60.390 55.000 11.73 0.00 39.64 4.52
3587 6175 1.740380 CGAATGTGAGGTCGAGCCAAT 60.740 52.381 11.73 0.00 39.64 3.16
3588 6176 1.936547 GAATGTGAGGTCGAGCCAATC 59.063 52.381 11.73 3.03 40.61 2.67
3589 6177 0.179000 ATGTGAGGTCGAGCCAATCC 59.821 55.000 11.73 0.00 40.61 3.01
3590 6178 0.904865 TGTGAGGTCGAGCCAATCCT 60.905 55.000 11.73 0.00 40.61 3.24
3591 6179 0.250513 GTGAGGTCGAGCCAATCCTT 59.749 55.000 11.73 0.00 40.61 3.36
3647 6240 5.535030 GGAGGGTGAATAGGCGATTTTTATT 59.465 40.000 0.00 0.00 0.00 1.40
3738 6331 4.142425 GGTAGACTACACTAGACAAGCCAC 60.142 50.000 14.48 0.00 0.00 5.01
3929 6525 3.256704 TGGGAAGGATAGAACCAGTTGT 58.743 45.455 0.00 0.00 0.00 3.32
3950 6546 3.874383 TTGGTGAGGACAAGGATTTGA 57.126 42.857 0.00 0.00 37.73 2.69
3953 6549 5.512942 TGGTGAGGACAAGGATTTGATAA 57.487 39.130 0.00 0.00 37.73 1.75
3972 6569 5.654650 TGATAAACCAGTTCCAGTTGTTGTT 59.345 36.000 0.00 0.00 0.00 2.83
3997 6594 2.040813 ACTGTACGTCTGGTTAGGGAGA 59.959 50.000 0.00 0.00 0.00 3.71
4038 6635 2.904434 ACCGTGTCTTCACCTTATTCCT 59.096 45.455 0.00 0.00 41.09 3.36
4078 6675 0.904865 TCCTCGCCCAATCACTCTGT 60.905 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.765135 TCAAACGGGTTGAGGAGGGA 60.765 55.000 3.93 0.00 41.47 4.20
101 102 2.370849 GGGAACTCAGGAGTAAACCACA 59.629 50.000 16.26 0.00 41.58 4.17
132 133 1.008538 GCCCACAGCACAAGAAACG 60.009 57.895 0.00 0.00 42.97 3.60
221 222 2.497092 CGCGACGAACACATCCTCG 61.497 63.158 0.00 0.00 38.91 4.63
252 253 1.933181 TCGCAATTATCTCCAGCAACG 59.067 47.619 0.00 0.00 0.00 4.10
302 306 0.178935 TTGGAGGCAAGGGGGAAAAG 60.179 55.000 0.00 0.00 0.00 2.27
307 311 0.545071 AACATTTGGAGGCAAGGGGG 60.545 55.000 0.00 0.00 0.00 5.40
341 345 2.508439 AATCCGCGCATCGTCGTT 60.508 55.556 8.75 0.00 36.19 3.85
342 346 2.055310 TAGAATCCGCGCATCGTCGT 62.055 55.000 8.75 0.00 36.19 4.34
343 347 1.330779 CTAGAATCCGCGCATCGTCG 61.331 60.000 8.75 0.00 36.19 5.12
344 348 0.317938 ACTAGAATCCGCGCATCGTC 60.318 55.000 8.75 0.00 36.19 4.20
345 349 0.595053 CACTAGAATCCGCGCATCGT 60.595 55.000 8.75 0.00 36.19 3.73
449 457 0.466124 TGACATCACGGGTCACACAA 59.534 50.000 0.00 0.00 40.16 3.33
488 496 4.017126 GTCTTTCCCGATCCCAATTTCTT 58.983 43.478 0.00 0.00 0.00 2.52
515 523 1.275573 AGAGTAAGACAAACTCGGGCC 59.724 52.381 0.00 0.00 46.46 5.80
539 547 9.767684 CGCGGCTAAATTATCAATCAATAATAA 57.232 29.630 0.00 0.00 32.72 1.40
540 548 8.394877 CCGCGGCTAAATTATCAATCAATAATA 58.605 33.333 14.67 0.00 32.72 0.98
623 631 1.815795 GCACTAGCTGGCCTAATTCCC 60.816 57.143 3.32 0.00 37.91 3.97
744 757 8.726870 ATCCAAGCATCAATTTAGAAATTTGG 57.273 30.769 0.00 7.23 36.52 3.28
771 784 6.433093 AGGCAACGTGTTAAAGAATTTCCTAT 59.567 34.615 0.00 0.00 40.40 2.57
773 786 4.583073 AGGCAACGTGTTAAAGAATTTCCT 59.417 37.500 0.00 0.00 40.40 3.36
775 788 9.783256 ATTATAGGCAACGTGTTAAAGAATTTC 57.217 29.630 0.00 0.00 40.40 2.17
780 793 5.521010 CGGATTATAGGCAACGTGTTAAAGA 59.479 40.000 0.00 0.00 46.39 2.52
781 794 5.521010 TCGGATTATAGGCAACGTGTTAAAG 59.479 40.000 0.00 0.00 46.39 1.85
782 795 5.417811 TCGGATTATAGGCAACGTGTTAAA 58.582 37.500 0.00 0.00 46.39 1.52
783 796 5.008619 TCGGATTATAGGCAACGTGTTAA 57.991 39.130 0.00 0.00 46.39 2.01
784 797 4.652421 TCGGATTATAGGCAACGTGTTA 57.348 40.909 0.00 0.00 46.39 2.41
785 798 3.530265 TCGGATTATAGGCAACGTGTT 57.470 42.857 0.00 0.00 46.39 3.32
786 799 3.069016 TCATCGGATTATAGGCAACGTGT 59.931 43.478 0.00 0.00 46.39 4.49
787 800 3.649073 TCATCGGATTATAGGCAACGTG 58.351 45.455 0.00 0.00 46.39 4.49
788 801 4.245660 CATCATCGGATTATAGGCAACGT 58.754 43.478 0.00 0.00 46.39 3.99
789 802 4.245660 ACATCATCGGATTATAGGCAACG 58.754 43.478 0.00 0.00 46.39 4.10
795 808 8.663025 CAATTGAGGAACATCATCGGATTATAG 58.337 37.037 0.00 0.00 28.20 1.31
803 816 3.875727 AGAGCAATTGAGGAACATCATCG 59.124 43.478 10.34 0.00 28.20 3.84
808 821 4.166725 TGGGATAGAGCAATTGAGGAACAT 59.833 41.667 10.34 0.00 0.00 2.71
832 845 7.898014 AGGTACACATATAACTGTCATCTGA 57.102 36.000 0.00 0.00 0.00 3.27
843 856 9.562408 TTGAAAGTGACAAAGGTACACATATAA 57.438 29.630 0.00 0.00 37.05 0.98
846 859 6.017440 GCTTGAAAGTGACAAAGGTACACATA 60.017 38.462 0.00 0.00 37.05 2.29
853 866 3.356290 AGTGCTTGAAAGTGACAAAGGT 58.644 40.909 0.00 0.00 0.00 3.50
869 882 1.134965 GTATCAGCGGTTCAGAGTGCT 60.135 52.381 0.00 0.00 38.43 4.40
889 902 4.331968 TCTGTAAGCAAGTAAACCCATGG 58.668 43.478 4.14 4.14 0.00 3.66
890 903 5.942872 CTTCTGTAAGCAAGTAAACCCATG 58.057 41.667 0.00 0.00 0.00 3.66
909 922 5.406780 CGTCTAAACTGTCAGAAATGCTTCT 59.593 40.000 6.91 0.00 42.96 2.85
931 948 8.773404 ATAAGAGCAAGTTTCTGTATAAACGT 57.227 30.769 0.00 0.00 42.83 3.99
1063 1080 9.807649 GTTCAAAGGATTTTGTGCTGAATATAT 57.192 29.630 0.56 0.00 43.33 0.86
1064 1081 8.801299 TGTTCAAAGGATTTTGTGCTGAATATA 58.199 29.630 0.56 0.00 43.33 0.86
1065 1082 7.669427 TGTTCAAAGGATTTTGTGCTGAATAT 58.331 30.769 0.56 0.00 43.33 1.28
1128 1148 3.444029 ACCAGCCTGCAAAAATTAGGAT 58.556 40.909 0.00 0.00 33.33 3.24
1176 1197 4.755266 TCCTACAATGCTAGGAAAGACC 57.245 45.455 8.46 0.00 39.57 3.85
1512 1533 0.320858 TTCGACCGCTGGCATACAAA 60.321 50.000 0.00 0.00 0.00 2.83
1568 4072 4.080356 CCCCTATCCAATGAACTTCAGTGA 60.080 45.833 18.57 7.16 44.38 3.41
1570 4074 3.372025 GCCCCTATCCAATGAACTTCAGT 60.372 47.826 0.00 0.00 0.00 3.41
1581 4085 1.367346 TTGTCACTGCCCCTATCCAA 58.633 50.000 0.00 0.00 0.00 3.53
1605 4111 2.557924 CAAGCACAATACCTGCAGGAAA 59.442 45.455 39.19 25.43 37.08 3.13
1625 4131 1.620323 CTCACACCATCACCAGAGTCA 59.380 52.381 0.00 0.00 0.00 3.41
1910 4416 5.534654 CCTGAACCTTTCTGAACCAATTGTA 59.465 40.000 4.43 0.00 0.00 2.41
2012 4518 5.526111 TCTGATATCGACGTCACACTTCATA 59.474 40.000 17.16 2.00 0.00 2.15
2252 4758 7.041780 GGAGTAATGTATATGCAACTTCCACAG 60.042 40.741 0.00 0.00 0.00 3.66
2286 4792 4.491676 AGCGCTATAAAAAGTTGTCGAGA 58.508 39.130 8.99 0.00 0.00 4.04
2290 4796 5.248834 CGAAGAGCGCTATAAAAAGTTGTC 58.751 41.667 11.50 0.00 0.00 3.18
2295 4801 2.544267 CCCCGAAGAGCGCTATAAAAAG 59.456 50.000 11.50 0.00 39.11 2.27
2491 4997 7.050377 TCTAAAAGTTCAAGCAGAGGATATGG 58.950 38.462 0.00 0.00 0.00 2.74
2773 5280 0.103026 TAGCGCTAGGATGCACACAG 59.897 55.000 14.45 0.00 0.00 3.66
2788 5295 0.530650 CACCCAGCCTGTACATAGCG 60.531 60.000 11.21 7.34 0.00 4.26
2789 5296 0.541863 ACACCCAGCCTGTACATAGC 59.458 55.000 9.44 9.44 0.00 2.97
2795 5302 1.002257 CATGCACACCCAGCCTGTA 60.002 57.895 0.00 0.00 0.00 2.74
2802 5309 0.038599 AGATTGAGCATGCACACCCA 59.961 50.000 21.98 5.38 0.00 4.51
2832 5339 4.182693 TGCTCAAAATGAAGCATCAAGG 57.817 40.909 0.00 0.00 39.49 3.61
2865 5372 8.466798 ACAAATATAGGATTTTTCGACAAAGGG 58.533 33.333 2.86 0.00 0.00 3.95
2882 5389 8.361139 AGATACTCCCTTCGTTCACAAATATAG 58.639 37.037 0.00 0.00 0.00 1.31
2897 5474 4.081695 ACCTCTTGGAAGATACTCCCTT 57.918 45.455 0.00 0.00 34.22 3.95
2921 5506 8.663025 AGCAATCATAGCATATTACAGATTTCG 58.337 33.333 0.00 0.00 0.00 3.46
2975 5560 3.406200 CAGCCTCCCCTCCACCAG 61.406 72.222 0.00 0.00 0.00 4.00
3015 5600 2.396157 GGAACAACGCACCGGATCC 61.396 63.158 9.46 0.00 0.00 3.36
3064 5650 1.288188 TGGAGATCCACATCTGCCAA 58.712 50.000 0.00 0.00 44.89 4.52
3109 5695 1.203052 CACTTCATGTGGACAATGCCC 59.797 52.381 0.00 0.00 42.68 5.36
3135 5721 3.277142 AACAACCTTCACCGACTCTTT 57.723 42.857 0.00 0.00 0.00 2.52
3191 5778 6.303839 ACAAAACACTAACCATGTACTCCAT 58.696 36.000 0.00 0.00 0.00 3.41
3192 5779 5.686753 ACAAAACACTAACCATGTACTCCA 58.313 37.500 0.00 0.00 0.00 3.86
3193 5780 7.156673 TCTACAAAACACTAACCATGTACTCC 58.843 38.462 0.00 0.00 0.00 3.85
3194 5781 8.597662 TTCTACAAAACACTAACCATGTACTC 57.402 34.615 0.00 0.00 0.00 2.59
3195 5782 8.426489 TCTTCTACAAAACACTAACCATGTACT 58.574 33.333 0.00 0.00 0.00 2.73
3212 5800 7.331026 CCTTTGAGGATACACATCTTCTACAA 58.669 38.462 0.00 0.00 37.67 2.41
3228 5816 2.877097 TGCTATTGTGCCTTTGAGGA 57.123 45.000 0.00 0.00 37.67 3.71
3234 5822 2.508361 GGCCATGCTATTGTGCCTT 58.492 52.632 0.00 0.00 39.05 4.35
3238 5826 0.818938 TGCAAGGCCATGCTATTGTG 59.181 50.000 31.11 4.09 46.54 3.33
3239 5827 1.411246 CATGCAAGGCCATGCTATTGT 59.589 47.619 31.11 11.21 46.54 2.71
3240 5828 1.270094 CCATGCAAGGCCATGCTATTG 60.270 52.381 31.11 23.71 46.54 1.90
3241 5829 1.045407 CCATGCAAGGCCATGCTATT 58.955 50.000 31.11 14.94 46.54 1.73
3242 5830 2.741433 CCATGCAAGGCCATGCTAT 58.259 52.632 31.11 20.16 46.54 2.97
3243 5831 4.263452 CCATGCAAGGCCATGCTA 57.737 55.556 31.11 18.90 46.54 3.49
3251 5839 0.388907 CAGGAAAACGCCATGCAAGG 60.389 55.000 2.86 2.86 0.00 3.61
3252 5840 1.010419 GCAGGAAAACGCCATGCAAG 61.010 55.000 0.00 0.00 34.40 4.01
3253 5841 1.006337 GCAGGAAAACGCCATGCAA 60.006 52.632 0.00 0.00 34.40 4.08
3254 5842 1.902918 AGCAGGAAAACGCCATGCA 60.903 52.632 0.00 0.00 35.73 3.96
3255 5843 1.444895 CAGCAGGAAAACGCCATGC 60.445 57.895 0.00 0.00 34.43 4.06
3256 5844 1.164411 TACAGCAGGAAAACGCCATG 58.836 50.000 0.00 0.00 0.00 3.66
3257 5845 1.745087 CATACAGCAGGAAAACGCCAT 59.255 47.619 0.00 0.00 0.00 4.40
3258 5846 1.164411 CATACAGCAGGAAAACGCCA 58.836 50.000 0.00 0.00 0.00 5.69
3259 5847 1.448985 TCATACAGCAGGAAAACGCC 58.551 50.000 0.00 0.00 0.00 5.68
3260 5848 3.552604 TTTCATACAGCAGGAAAACGC 57.447 42.857 0.00 0.00 34.17 4.84
3261 5849 7.471721 TCATTATTTCATACAGCAGGAAAACG 58.528 34.615 0.00 0.00 40.09 3.60
3262 5850 9.807649 ATTCATTATTTCATACAGCAGGAAAAC 57.192 29.630 0.00 0.00 40.09 2.43
3263 5851 9.806203 CATTCATTATTTCATACAGCAGGAAAA 57.194 29.630 0.00 0.00 40.09 2.29
3264 5852 8.415553 CCATTCATTATTTCATACAGCAGGAAA 58.584 33.333 0.00 0.00 40.88 3.13
3265 5853 7.779326 TCCATTCATTATTTCATACAGCAGGAA 59.221 33.333 0.00 0.00 0.00 3.36
3266 5854 7.289310 TCCATTCATTATTTCATACAGCAGGA 58.711 34.615 0.00 0.00 0.00 3.86
3267 5855 7.514784 TCCATTCATTATTTCATACAGCAGG 57.485 36.000 0.00 0.00 0.00 4.85
3268 5856 8.407832 TGTTCCATTCATTATTTCATACAGCAG 58.592 33.333 0.00 0.00 0.00 4.24
3269 5857 8.291191 TGTTCCATTCATTATTTCATACAGCA 57.709 30.769 0.00 0.00 0.00 4.41
3281 5869 9.859152 TGGAATACACATATGTTCCATTCATTA 57.141 29.630 18.89 9.86 39.71 1.90
3282 5870 8.765488 TGGAATACACATATGTTCCATTCATT 57.235 30.769 18.89 6.49 39.71 2.57
3283 5871 8.765488 TTGGAATACACATATGTTCCATTCAT 57.235 30.769 21.97 1.32 42.66 2.57
3284 5872 8.465999 GTTTGGAATACACATATGTTCCATTCA 58.534 33.333 21.97 9.47 42.66 2.57
3285 5873 7.643764 CGTTTGGAATACACATATGTTCCATTC 59.356 37.037 21.97 19.62 42.66 2.67
3286 5874 7.479980 CGTTTGGAATACACATATGTTCCATT 58.520 34.615 21.97 14.16 42.66 3.16
3287 5875 6.459573 GCGTTTGGAATACACATATGTTCCAT 60.460 38.462 21.97 7.55 42.66 3.41
3288 5876 5.163703 GCGTTTGGAATACACATATGTTCCA 60.164 40.000 18.89 18.89 41.86 3.53
3289 5877 5.065988 AGCGTTTGGAATACACATATGTTCC 59.934 40.000 14.85 14.85 40.48 3.62
3290 5878 5.965334 CAGCGTTTGGAATACACATATGTTC 59.035 40.000 5.37 0.88 40.48 3.18
3291 5879 5.676079 GCAGCGTTTGGAATACACATATGTT 60.676 40.000 5.37 0.84 40.48 2.71
3292 5880 4.201910 GCAGCGTTTGGAATACACATATGT 60.202 41.667 1.41 1.41 43.30 2.29
3293 5881 4.282068 GCAGCGTTTGGAATACACATATG 58.718 43.478 0.00 0.00 0.00 1.78
3294 5882 3.315191 GGCAGCGTTTGGAATACACATAT 59.685 43.478 0.00 0.00 0.00 1.78
3295 5883 2.680841 GGCAGCGTTTGGAATACACATA 59.319 45.455 0.00 0.00 0.00 2.29
3296 5884 1.472480 GGCAGCGTTTGGAATACACAT 59.528 47.619 0.00 0.00 0.00 3.21
3297 5885 0.878416 GGCAGCGTTTGGAATACACA 59.122 50.000 0.00 0.00 0.00 3.72
3298 5886 1.165270 AGGCAGCGTTTGGAATACAC 58.835 50.000 0.00 0.00 0.00 2.90
3299 5887 2.772077 TAGGCAGCGTTTGGAATACA 57.228 45.000 0.00 0.00 0.00 2.29
3300 5888 2.354821 CCTTAGGCAGCGTTTGGAATAC 59.645 50.000 0.00 0.00 0.00 1.89
3301 5889 2.639065 CCTTAGGCAGCGTTTGGAATA 58.361 47.619 0.00 0.00 0.00 1.75
3302 5890 1.463674 CCTTAGGCAGCGTTTGGAAT 58.536 50.000 0.00 0.00 0.00 3.01
3303 5891 0.608035 CCCTTAGGCAGCGTTTGGAA 60.608 55.000 0.00 0.00 0.00 3.53
3304 5892 1.002624 CCCTTAGGCAGCGTTTGGA 60.003 57.895 0.00 0.00 0.00 3.53
3305 5893 3.590824 CCCTTAGGCAGCGTTTGG 58.409 61.111 0.00 0.00 0.00 3.28
3320 5908 1.893919 GGGATCGGCTAGAGATGCCC 61.894 65.000 20.83 17.24 46.70 5.36
3321 5909 1.594310 GGGATCGGCTAGAGATGCC 59.406 63.158 18.32 18.32 46.51 4.40
3322 5910 0.972883 AAGGGATCGGCTAGAGATGC 59.027 55.000 10.29 10.29 36.00 3.91
3323 5911 5.654650 ACTTATAAGGGATCGGCTAGAGATG 59.345 44.000 16.73 0.00 0.00 2.90
3324 5912 5.833340 ACTTATAAGGGATCGGCTAGAGAT 58.167 41.667 16.73 0.00 0.00 2.75
3325 5913 5.258216 ACTTATAAGGGATCGGCTAGAGA 57.742 43.478 16.73 0.00 0.00 3.10
3326 5914 5.477291 TCAACTTATAAGGGATCGGCTAGAG 59.523 44.000 16.73 0.00 0.00 2.43
3327 5915 5.243283 GTCAACTTATAAGGGATCGGCTAGA 59.757 44.000 16.73 0.00 0.00 2.43
3328 5916 5.471257 GTCAACTTATAAGGGATCGGCTAG 58.529 45.833 16.73 0.00 0.00 3.42
3329 5917 4.022589 CGTCAACTTATAAGGGATCGGCTA 60.023 45.833 16.73 0.00 0.00 3.93
3330 5918 3.243771 CGTCAACTTATAAGGGATCGGCT 60.244 47.826 16.73 0.00 0.00 5.52
3331 5919 3.057734 CGTCAACTTATAAGGGATCGGC 58.942 50.000 16.73 1.28 0.00 5.54
3332 5920 3.319972 TCCGTCAACTTATAAGGGATCGG 59.680 47.826 24.37 24.37 34.15 4.18
3333 5921 4.037684 AGTCCGTCAACTTATAAGGGATCG 59.962 45.833 16.73 16.09 30.41 3.69
3334 5922 5.532664 AGTCCGTCAACTTATAAGGGATC 57.467 43.478 16.73 7.85 30.41 3.36
3335 5923 7.427989 TTTAGTCCGTCAACTTATAAGGGAT 57.572 36.000 16.73 0.06 30.41 3.85
3336 5924 6.855763 TTTAGTCCGTCAACTTATAAGGGA 57.144 37.500 16.73 9.88 0.00 4.20
3337 5925 6.314648 GGTTTTAGTCCGTCAACTTATAAGGG 59.685 42.308 16.73 7.76 0.00 3.95
3338 5926 6.314648 GGGTTTTAGTCCGTCAACTTATAAGG 59.685 42.308 16.73 0.17 0.00 2.69
3339 5927 7.101700 AGGGTTTTAGTCCGTCAACTTATAAG 58.898 38.462 11.05 11.05 0.00 1.73
3340 5928 7.008021 AGGGTTTTAGTCCGTCAACTTATAA 57.992 36.000 0.00 0.00 0.00 0.98
3341 5929 6.610075 AGGGTTTTAGTCCGTCAACTTATA 57.390 37.500 0.00 0.00 0.00 0.98
3342 5930 5.494390 AGGGTTTTAGTCCGTCAACTTAT 57.506 39.130 0.00 0.00 0.00 1.73
3343 5931 4.961438 AGGGTTTTAGTCCGTCAACTTA 57.039 40.909 0.00 0.00 0.00 2.24
3344 5932 3.851458 AGGGTTTTAGTCCGTCAACTT 57.149 42.857 0.00 0.00 0.00 2.66
3345 5933 3.851458 AAGGGTTTTAGTCCGTCAACT 57.149 42.857 0.00 0.00 0.00 3.16
3346 5934 4.635223 ACTAAGGGTTTTAGTCCGTCAAC 58.365 43.478 0.00 0.00 29.89 3.18
3347 5935 4.961438 ACTAAGGGTTTTAGTCCGTCAA 57.039 40.909 0.00 0.00 29.89 3.18
3348 5936 4.463891 CCTACTAAGGGTTTTAGTCCGTCA 59.536 45.833 3.08 0.00 39.48 4.35
3349 5937 5.003692 CCTACTAAGGGTTTTAGTCCGTC 57.996 47.826 3.08 0.00 39.48 4.79
3393 5981 4.569719 AGGGATCGGCTAGAAAGAAAAA 57.430 40.909 0.00 0.00 0.00 1.94
3394 5982 4.569719 AAGGGATCGGCTAGAAAGAAAA 57.430 40.909 0.00 0.00 0.00 2.29
3395 5983 5.687166 TTAAGGGATCGGCTAGAAAGAAA 57.313 39.130 0.00 0.00 0.00 2.52
3396 5984 5.189145 AGTTTAAGGGATCGGCTAGAAAGAA 59.811 40.000 0.00 0.00 0.00 2.52
3397 5985 4.715297 AGTTTAAGGGATCGGCTAGAAAGA 59.285 41.667 0.00 0.00 0.00 2.52
3398 5986 5.024785 AGTTTAAGGGATCGGCTAGAAAG 57.975 43.478 0.00 0.00 0.00 2.62
3399 5987 5.431179 AAGTTTAAGGGATCGGCTAGAAA 57.569 39.130 0.00 0.00 0.00 2.52
3400 5988 6.343703 GTTAAGTTTAAGGGATCGGCTAGAA 58.656 40.000 0.00 0.00 0.00 2.10
3401 5989 5.450965 CGTTAAGTTTAAGGGATCGGCTAGA 60.451 44.000 0.00 0.00 0.00 2.43
3402 5990 4.743644 CGTTAAGTTTAAGGGATCGGCTAG 59.256 45.833 0.00 0.00 0.00 3.42
3403 5991 4.441913 CCGTTAAGTTTAAGGGATCGGCTA 60.442 45.833 15.00 0.00 46.40 3.93
3404 5992 3.528532 CGTTAAGTTTAAGGGATCGGCT 58.471 45.455 0.00 0.00 0.00 5.52
3405 5993 2.610833 CCGTTAAGTTTAAGGGATCGGC 59.389 50.000 15.00 0.00 46.40 5.54
3406 5994 4.127566 TCCGTTAAGTTTAAGGGATCGG 57.872 45.455 17.56 11.23 46.74 4.18
3411 5999 7.442062 TGAAGTTTACTCCGTTAAGTTTAAGGG 59.558 37.037 14.27 14.27 45.42 3.95
3412 6000 8.369218 TGAAGTTTACTCCGTTAAGTTTAAGG 57.631 34.615 0.00 0.00 0.00 2.69
3416 6004 9.511144 CAATTTGAAGTTTACTCCGTTAAGTTT 57.489 29.630 0.00 0.00 0.00 2.66
3417 6005 8.895737 TCAATTTGAAGTTTACTCCGTTAAGTT 58.104 29.630 0.00 0.00 0.00 2.66
3418 6006 8.441312 TCAATTTGAAGTTTACTCCGTTAAGT 57.559 30.769 0.00 0.00 0.00 2.24
3419 6007 9.543018 GATCAATTTGAAGTTTACTCCGTTAAG 57.457 33.333 2.68 0.00 0.00 1.85
3420 6008 9.058174 TGATCAATTTGAAGTTTACTCCGTTAA 57.942 29.630 2.68 0.00 0.00 2.01
3421 6009 8.610248 TGATCAATTTGAAGTTTACTCCGTTA 57.390 30.769 2.68 0.00 0.00 3.18
3422 6010 7.504924 TGATCAATTTGAAGTTTACTCCGTT 57.495 32.000 2.68 0.00 0.00 4.44
3423 6011 7.504924 TTGATCAATTTGAAGTTTACTCCGT 57.495 32.000 3.38 0.00 0.00 4.69
3424 6012 8.076178 AGTTTGATCAATTTGAAGTTTACTCCG 58.924 33.333 9.40 0.00 0.00 4.63
3425 6013 9.399403 GAGTTTGATCAATTTGAAGTTTACTCC 57.601 33.333 9.40 0.00 0.00 3.85
3426 6014 9.950680 TGAGTTTGATCAATTTGAAGTTTACTC 57.049 29.630 9.40 14.29 0.00 2.59
3430 6018 8.606602 GCTTTGAGTTTGATCAATTTGAAGTTT 58.393 29.630 9.40 0.00 38.90 2.66
3431 6019 7.765360 TGCTTTGAGTTTGATCAATTTGAAGTT 59.235 29.630 9.40 0.00 38.90 2.66
3432 6020 7.267128 TGCTTTGAGTTTGATCAATTTGAAGT 58.733 30.769 9.40 0.00 38.90 3.01
3433 6021 7.703298 TGCTTTGAGTTTGATCAATTTGAAG 57.297 32.000 9.40 10.83 38.90 3.02
3434 6022 8.665643 ATTGCTTTGAGTTTGATCAATTTGAA 57.334 26.923 9.40 0.00 38.90 2.69
3435 6023 8.665643 AATTGCTTTGAGTTTGATCAATTTGA 57.334 26.923 9.40 0.75 38.90 2.69
3436 6024 9.165014 CAAATTGCTTTGAGTTTGATCAATTTG 57.835 29.630 9.40 17.36 45.44 2.32
3437 6025 9.111613 TCAAATTGCTTTGAGTTTGATCAATTT 57.888 25.926 9.40 0.08 44.46 1.82
3438 6026 8.665643 TCAAATTGCTTTGAGTTTGATCAATT 57.334 26.923 9.40 0.48 44.46 2.32
3450 6038 3.383185 ACCTTCGGTTCAAATTGCTTTGA 59.617 39.130 0.00 0.00 46.92 2.69
3451 6039 3.716601 ACCTTCGGTTCAAATTGCTTTG 58.283 40.909 0.00 0.00 42.60 2.77
3452 6040 4.558697 GCTACCTTCGGTTCAAATTGCTTT 60.559 41.667 0.00 0.00 37.09 3.51
3453 6041 3.057526 GCTACCTTCGGTTCAAATTGCTT 60.058 43.478 0.00 0.00 37.09 3.91
3454 6042 2.488153 GCTACCTTCGGTTCAAATTGCT 59.512 45.455 0.00 0.00 37.09 3.91
3455 6043 2.227865 TGCTACCTTCGGTTCAAATTGC 59.772 45.455 0.00 0.00 37.09 3.56
3456 6044 4.414852 CATGCTACCTTCGGTTCAAATTG 58.585 43.478 0.00 0.00 37.09 2.32
3457 6045 3.119495 GCATGCTACCTTCGGTTCAAATT 60.119 43.478 11.37 0.00 37.09 1.82
3458 6046 2.423538 GCATGCTACCTTCGGTTCAAAT 59.576 45.455 11.37 0.00 37.09 2.32
3459 6047 1.810151 GCATGCTACCTTCGGTTCAAA 59.190 47.619 11.37 0.00 37.09 2.69
3460 6048 1.271108 TGCATGCTACCTTCGGTTCAA 60.271 47.619 20.33 0.00 37.09 2.69
3461 6049 0.323302 TGCATGCTACCTTCGGTTCA 59.677 50.000 20.33 0.00 37.09 3.18
3462 6050 1.668419 ATGCATGCTACCTTCGGTTC 58.332 50.000 20.33 0.00 37.09 3.62
3463 6051 2.128771 AATGCATGCTACCTTCGGTT 57.871 45.000 20.33 0.00 37.09 4.44
3464 6052 2.128771 AAATGCATGCTACCTTCGGT 57.871 45.000 20.33 0.00 40.16 4.69
3465 6053 4.142491 TGTTTAAATGCATGCTACCTTCGG 60.142 41.667 20.33 0.00 0.00 4.30
3466 6054 4.980590 TGTTTAAATGCATGCTACCTTCG 58.019 39.130 20.33 0.00 0.00 3.79
3467 6055 8.807581 GTTTATGTTTAAATGCATGCTACCTTC 58.192 33.333 20.33 4.93 30.34 3.46
3468 6056 8.310382 TGTTTATGTTTAAATGCATGCTACCTT 58.690 29.630 20.33 9.04 30.34 3.50
3469 6057 7.835822 TGTTTATGTTTAAATGCATGCTACCT 58.164 30.769 20.33 3.36 30.34 3.08
3470 6058 8.647143 ATGTTTATGTTTAAATGCATGCTACC 57.353 30.769 20.33 0.48 30.34 3.18
3488 6076 9.988815 TGGTTGTGCAAAACTATTTATGTTTAT 57.011 25.926 19.06 0.00 36.72 1.40
3489 6077 9.817809 TTGGTTGTGCAAAACTATTTATGTTTA 57.182 25.926 19.06 0.00 36.72 2.01
3490 6078 8.723942 TTGGTTGTGCAAAACTATTTATGTTT 57.276 26.923 19.06 0.00 39.03 2.83
3491 6079 8.608317 GTTTGGTTGTGCAAAACTATTTATGTT 58.392 29.630 19.06 0.00 37.87 2.71
3492 6080 7.766278 TGTTTGGTTGTGCAAAACTATTTATGT 59.234 29.630 19.06 0.00 40.73 2.29
3493 6081 8.136057 TGTTTGGTTGTGCAAAACTATTTATG 57.864 30.769 19.06 0.00 40.73 1.90
3494 6082 8.900983 ATGTTTGGTTGTGCAAAACTATTTAT 57.099 26.923 19.06 6.62 40.73 1.40
3495 6083 9.817809 TTATGTTTGGTTGTGCAAAACTATTTA 57.182 25.926 19.06 4.64 40.73 1.40
3496 6084 8.723942 TTATGTTTGGTTGTGCAAAACTATTT 57.276 26.923 19.06 3.31 40.73 1.40
3497 6085 8.723942 TTTATGTTTGGTTGTGCAAAACTATT 57.276 26.923 19.06 2.37 40.73 1.73
3498 6086 8.608317 GTTTTATGTTTGGTTGTGCAAAACTAT 58.392 29.630 19.06 9.44 40.73 2.12
3499 6087 7.602644 TGTTTTATGTTTGGTTGTGCAAAACTA 59.397 29.630 19.06 10.90 40.73 2.24
3500 6088 6.428159 TGTTTTATGTTTGGTTGTGCAAAACT 59.572 30.769 19.06 1.05 40.73 2.66
3501 6089 6.521477 GTGTTTTATGTTTGGTTGTGCAAAAC 59.479 34.615 11.58 11.58 40.56 2.43
3502 6090 6.204688 TGTGTTTTATGTTTGGTTGTGCAAAA 59.795 30.769 0.00 0.00 0.00 2.44
3503 6091 5.700832 TGTGTTTTATGTTTGGTTGTGCAAA 59.299 32.000 0.00 0.00 0.00 3.68
3504 6092 5.237815 TGTGTTTTATGTTTGGTTGTGCAA 58.762 33.333 0.00 0.00 0.00 4.08
3505 6093 4.820897 TGTGTTTTATGTTTGGTTGTGCA 58.179 34.783 0.00 0.00 0.00 4.57
3506 6094 5.786401 TTGTGTTTTATGTTTGGTTGTGC 57.214 34.783 0.00 0.00 0.00 4.57
3539 6127 7.544915 CCGAAAGTAGTTTAGTTAAGCTTAGCT 59.455 37.037 23.87 23.87 42.56 3.32
3540 6128 7.330454 ACCGAAAGTAGTTTAGTTAAGCTTAGC 59.670 37.037 12.03 12.03 0.00 3.09
3541 6129 8.754230 ACCGAAAGTAGTTTAGTTAAGCTTAG 57.246 34.615 6.24 0.00 0.00 2.18
3542 6130 7.538678 CGACCGAAAGTAGTTTAGTTAAGCTTA 59.461 37.037 0.86 0.86 0.00 3.09
3543 6131 6.364435 CGACCGAAAGTAGTTTAGTTAAGCTT 59.636 38.462 3.48 3.48 0.00 3.74
3544 6132 5.860716 CGACCGAAAGTAGTTTAGTTAAGCT 59.139 40.000 0.00 0.00 0.00 3.74
3545 6133 5.858581 TCGACCGAAAGTAGTTTAGTTAAGC 59.141 40.000 0.00 0.00 0.00 3.09
3546 6134 7.858052 TTCGACCGAAAGTAGTTTAGTTAAG 57.142 36.000 2.02 0.00 0.00 1.85
3547 6135 7.867403 ACATTCGACCGAAAGTAGTTTAGTTAA 59.133 33.333 10.67 0.00 34.81 2.01
3548 6136 7.326789 CACATTCGACCGAAAGTAGTTTAGTTA 59.673 37.037 11.76 0.00 34.81 2.24
3549 6137 6.145048 CACATTCGACCGAAAGTAGTTTAGTT 59.855 38.462 11.76 0.00 34.81 2.24
3550 6138 5.632347 CACATTCGACCGAAAGTAGTTTAGT 59.368 40.000 11.76 0.00 34.81 2.24
3551 6139 5.860182 TCACATTCGACCGAAAGTAGTTTAG 59.140 40.000 11.76 0.00 34.81 1.85
3552 6140 5.771469 TCACATTCGACCGAAAGTAGTTTA 58.229 37.500 11.76 0.00 34.81 2.01
3553 6141 4.624015 TCACATTCGACCGAAAGTAGTTT 58.376 39.130 11.76 0.00 34.81 2.66
3554 6142 4.235360 CTCACATTCGACCGAAAGTAGTT 58.765 43.478 11.76 0.00 34.81 2.24
3555 6143 3.367087 CCTCACATTCGACCGAAAGTAGT 60.367 47.826 11.76 5.29 34.81 2.73
3556 6144 3.179830 CCTCACATTCGACCGAAAGTAG 58.820 50.000 11.76 9.82 34.81 2.57
3557 6145 2.559668 ACCTCACATTCGACCGAAAGTA 59.440 45.455 11.76 2.57 34.81 2.24
3558 6146 1.343465 ACCTCACATTCGACCGAAAGT 59.657 47.619 8.97 7.99 36.63 2.66
3559 6147 1.993370 GACCTCACATTCGACCGAAAG 59.007 52.381 8.97 7.34 37.69 2.62
3560 6148 1.667756 CGACCTCACATTCGACCGAAA 60.668 52.381 8.97 0.00 37.43 3.46
3561 6149 0.109458 CGACCTCACATTCGACCGAA 60.109 55.000 7.33 7.33 37.43 4.30
3562 6150 0.956902 TCGACCTCACATTCGACCGA 60.957 55.000 0.00 0.00 39.29 4.69
3563 6151 0.523546 CTCGACCTCACATTCGACCG 60.524 60.000 0.00 0.00 39.29 4.79
3564 6152 0.802607 GCTCGACCTCACATTCGACC 60.803 60.000 0.00 0.00 39.29 4.79
3565 6153 0.802607 GGCTCGACCTCACATTCGAC 60.803 60.000 0.00 0.00 39.29 4.20
3566 6154 1.248101 TGGCTCGACCTCACATTCGA 61.248 55.000 5.77 0.00 41.83 3.71
3567 6155 0.389817 TTGGCTCGACCTCACATTCG 60.390 55.000 5.77 0.00 40.22 3.34
3568 6156 1.936547 GATTGGCTCGACCTCACATTC 59.063 52.381 5.77 0.00 40.22 2.67
3569 6157 1.407437 GGATTGGCTCGACCTCACATT 60.407 52.381 5.77 0.00 40.22 2.71
3570 6158 0.179000 GGATTGGCTCGACCTCACAT 59.821 55.000 5.77 0.00 40.22 3.21
3571 6159 0.904865 AGGATTGGCTCGACCTCACA 60.905 55.000 5.77 0.00 40.22 3.58
3572 6160 0.250513 AAGGATTGGCTCGACCTCAC 59.749 55.000 5.77 0.00 40.22 3.51
3573 6161 0.537188 GAAGGATTGGCTCGACCTCA 59.463 55.000 5.77 0.00 40.22 3.86
3574 6162 0.179070 GGAAGGATTGGCTCGACCTC 60.179 60.000 5.77 0.00 40.22 3.85
3575 6163 0.618968 AGGAAGGATTGGCTCGACCT 60.619 55.000 5.77 0.00 40.22 3.85
3576 6164 0.253327 AAGGAAGGATTGGCTCGACC 59.747 55.000 0.00 0.00 39.84 4.79
3577 6165 1.339151 ACAAGGAAGGATTGGCTCGAC 60.339 52.381 0.00 0.00 31.76 4.20
3578 6166 0.984230 ACAAGGAAGGATTGGCTCGA 59.016 50.000 0.00 0.00 31.76 4.04
3579 6167 1.470098 CAACAAGGAAGGATTGGCTCG 59.530 52.381 0.00 0.00 31.76 5.03
3580 6168 2.795329 TCAACAAGGAAGGATTGGCTC 58.205 47.619 0.00 0.00 31.76 4.70
3581 6169 2.978156 TCAACAAGGAAGGATTGGCT 57.022 45.000 0.00 0.00 31.76 4.75
3582 6170 3.321968 ACTTTCAACAAGGAAGGATTGGC 59.678 43.478 0.00 0.00 31.76 4.52
3583 6171 4.797275 GCACTTTCAACAAGGAAGGATTGG 60.797 45.833 0.00 0.00 31.76 3.16
3584 6172 4.038402 AGCACTTTCAACAAGGAAGGATTG 59.962 41.667 0.00 0.00 0.00 2.67
3585 6173 4.218312 AGCACTTTCAACAAGGAAGGATT 58.782 39.130 0.00 0.00 0.00 3.01
3586 6174 3.837355 AGCACTTTCAACAAGGAAGGAT 58.163 40.909 0.00 0.00 0.00 3.24
3587 6175 3.297134 AGCACTTTCAACAAGGAAGGA 57.703 42.857 0.00 0.00 0.00 3.36
3588 6176 4.137543 ACTAGCACTTTCAACAAGGAAGG 58.862 43.478 0.00 0.00 0.00 3.46
3589 6177 5.757850 AACTAGCACTTTCAACAAGGAAG 57.242 39.130 0.00 0.00 0.00 3.46
3590 6178 6.147164 CGATAACTAGCACTTTCAACAAGGAA 59.853 38.462 0.00 0.00 0.00 3.36
3591 6179 5.637810 CGATAACTAGCACTTTCAACAAGGA 59.362 40.000 0.00 0.00 0.00 3.36
3625 6213 9.449719 CTATAATAAAAATCGCCTATTCACCCT 57.550 33.333 0.00 0.00 0.00 4.34
3647 6240 6.726490 AGCCTCCGTATTTTGAAGACTATA 57.274 37.500 0.00 0.00 0.00 1.31
3666 6259 5.036117 TCTACTGTTTGTCTTCAAAGCCT 57.964 39.130 0.00 0.00 43.04 4.58
3738 6331 5.929697 TCACTTCATTGCTTACTTGACTG 57.070 39.130 0.00 0.00 0.00 3.51
3929 6525 4.177537 TCAAATCCTTGTCCTCACCAAA 57.822 40.909 0.00 0.00 33.94 3.28
3950 6546 6.603997 TGTAACAACAACTGGAACTGGTTTAT 59.396 34.615 0.00 0.00 0.00 1.40
3953 6549 4.337145 TGTAACAACAACTGGAACTGGTT 58.663 39.130 0.00 0.00 0.00 3.67
3972 6569 3.507233 CCCTAACCAGACGTACAGTTGTA 59.493 47.826 6.78 0.00 0.00 2.41
4038 6635 4.501571 GGACTGTGTGTTCTTAGCTCAAGA 60.502 45.833 0.00 0.00 41.66 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.