Multiple sequence alignment - TraesCS1D01G274300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G274300 chr1D 100.000 2626 0 0 1 2626 369926960 369924335 0.000000e+00 4850
1 TraesCS1D01G274300 chr1D 95.269 465 14 7 1030 1487 321640667 321641130 0.000000e+00 730
2 TraesCS1D01G274300 chr1D 97.412 425 9 2 1030 1453 321704953 321704530 0.000000e+00 723
3 TraesCS1D01G274300 chr1D 98.049 205 3 1 2422 2626 368326966 368326763 3.210000e-94 355
4 TraesCS1D01G274300 chr1D 86.667 165 15 3 2271 2428 368332540 368332376 2.690000e-40 176
5 TraesCS1D01G274300 chr1A 93.076 1112 57 17 584 1680 468599649 468598543 0.000000e+00 1609
6 TraesCS1D01G274300 chr1A 91.077 594 36 10 2044 2622 468598412 468597821 0.000000e+00 787
7 TraesCS1D01G274300 chr1A 97.356 416 11 0 1030 1445 400975350 400974935 0.000000e+00 708
8 TraesCS1D01G274300 chr1A 83.521 267 32 11 1342 1598 400972926 400972662 3.380000e-59 239
9 TraesCS1D01G274300 chr1A 91.489 141 11 1 455 594 516009731 516009591 2.670000e-45 193
10 TraesCS1D01G274300 chr1B 90.930 860 52 22 917 1765 492369153 492368309 0.000000e+00 1133
11 TraesCS1D01G274300 chr1B 92.308 650 38 7 1979 2626 492367852 492367213 0.000000e+00 913
12 TraesCS1D01G274300 chr1B 97.647 425 8 2 1030 1453 434423198 434422775 0.000000e+00 728
13 TraesCS1D01G274300 chr1B 97.412 425 9 2 1030 1453 434409081 434409504 0.000000e+00 723
14 TraesCS1D01G274300 chr1B 94.574 129 7 0 456 584 517899180 517899052 1.590000e-47 200
15 TraesCS1D01G274300 chr1B 83.654 208 20 8 659 856 492369380 492369177 1.610000e-42 183
16 TraesCS1D01G274300 chr4D 90.141 639 45 14 1018 1642 444177274 444177908 0.000000e+00 815
17 TraesCS1D01G274300 chr4A 89.137 626 48 14 1031 1642 23611221 23610602 0.000000e+00 761
18 TraesCS1D01G274300 chr7D 93.237 414 28 0 1032 1445 58768423 58768836 6.210000e-171 610
19 TraesCS1D01G274300 chr7D 93.846 130 8 0 458 587 498465395 498465266 2.060000e-46 196
20 TraesCS1D01G274300 chr3A 92.908 141 9 1 455 594 580812681 580812821 1.230000e-48 204
21 TraesCS1D01G274300 chr3A 93.182 132 9 0 462 593 348834569 348834438 7.420000e-46 195
22 TraesCS1D01G274300 chrUn 93.893 131 8 0 459 589 468101791 468101921 5.730000e-47 198
23 TraesCS1D01G274300 chr3D 93.233 133 9 0 462 594 422529323 422529191 2.060000e-46 196
24 TraesCS1D01G274300 chr3B 90.345 145 12 2 442 586 655858570 655858712 3.450000e-44 189
25 TraesCS1D01G274300 chr5B 88.235 153 16 2 437 589 571837795 571837645 5.770000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G274300 chr1D 369924335 369926960 2625 True 4850.0 4850 100.0000 1 2626 1 chr1D.!!$R4 2625
1 TraesCS1D01G274300 chr1A 468597821 468599649 1828 True 1198.0 1609 92.0765 584 2622 2 chr1A.!!$R3 2038
2 TraesCS1D01G274300 chr1A 400972662 400975350 2688 True 473.5 708 90.4385 1030 1598 2 chr1A.!!$R2 568
3 TraesCS1D01G274300 chr1B 492367213 492369380 2167 True 743.0 1133 88.9640 659 2626 3 chr1B.!!$R3 1967
4 TraesCS1D01G274300 chr4D 444177274 444177908 634 False 815.0 815 90.1410 1018 1642 1 chr4D.!!$F1 624
5 TraesCS1D01G274300 chr4A 23610602 23611221 619 True 761.0 761 89.1370 1031 1642 1 chr4A.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.038251 TCGCGACAGACTTGAGCAAT 60.038 50.0 3.71 0.0 33.48 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 4129 0.111061 ATGGTTCAGGACAGCAGCAA 59.889 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.577110 TTCAAGAATGTATTCAATTTCATGAGC 57.423 29.630 7.30 0.00 39.23 4.26
77 78 8.963725 TCAAGAATGTATTCAATTTCATGAGCT 58.036 29.630 7.30 0.00 39.23 4.09
78 79 9.582431 CAAGAATGTATTCAATTTCATGAGCTT 57.418 29.630 7.30 0.00 39.23 3.74
88 89 8.506140 TCAATTTCATGAGCTTTTAAAACTCG 57.494 30.769 17.79 10.06 32.98 4.18
89 90 6.934561 ATTTCATGAGCTTTTAAAACTCGC 57.065 33.333 17.79 11.88 32.98 5.03
90 91 5.431420 TTCATGAGCTTTTAAAACTCGCA 57.569 34.783 17.79 12.08 32.98 5.10
91 92 5.627499 TCATGAGCTTTTAAAACTCGCAT 57.373 34.783 17.79 13.27 32.98 4.73
92 93 6.012658 TCATGAGCTTTTAAAACTCGCATT 57.987 33.333 17.79 1.26 32.98 3.56
93 94 6.446318 TCATGAGCTTTTAAAACTCGCATTT 58.554 32.000 17.79 0.74 32.98 2.32
94 95 6.922957 TCATGAGCTTTTAAAACTCGCATTTT 59.077 30.769 17.79 2.64 35.89 1.82
95 96 7.437862 TCATGAGCTTTTAAAACTCGCATTTTT 59.562 29.630 17.79 0.00 33.80 1.94
127 128 9.689976 ATTCGTTAATTTGATTTGATGTTGTGA 57.310 25.926 0.00 0.00 0.00 3.58
128 129 9.689976 TTCGTTAATTTGATTTGATGTTGTGAT 57.310 25.926 0.00 0.00 0.00 3.06
129 130 9.689976 TCGTTAATTTGATTTGATGTTGTGATT 57.310 25.926 0.00 0.00 0.00 2.57
180 181 4.944249 TGTCGCGACAGACTTGAG 57.056 55.556 36.40 0.00 41.47 3.02
181 182 1.371758 TGTCGCGACAGACTTGAGC 60.372 57.895 36.40 8.52 41.47 4.26
182 183 1.371758 GTCGCGACAGACTTGAGCA 60.372 57.895 33.09 0.00 38.09 4.26
183 184 0.939577 GTCGCGACAGACTTGAGCAA 60.940 55.000 33.09 0.00 38.09 3.91
184 185 0.038251 TCGCGACAGACTTGAGCAAT 60.038 50.000 3.71 0.00 33.48 3.56
185 186 0.094216 CGCGACAGACTTGAGCAATG 59.906 55.000 0.00 0.00 33.48 2.82
186 187 0.179205 GCGACAGACTTGAGCAATGC 60.179 55.000 0.00 0.00 33.85 3.56
187 188 1.436600 CGACAGACTTGAGCAATGCT 58.563 50.000 7.79 7.79 43.88 3.79
196 197 2.305405 GAGCAATGCTCGCTACTGG 58.695 57.895 20.11 0.00 45.85 4.00
197 198 1.770085 GAGCAATGCTCGCTACTGGC 61.770 60.000 20.11 0.00 45.85 4.85
198 199 2.828128 GCAATGCTCGCTACTGGCC 61.828 63.158 0.00 0.00 37.74 5.36
199 200 2.182842 CAATGCTCGCTACTGGCCC 61.183 63.158 0.00 0.00 37.74 5.80
200 201 3.740128 AATGCTCGCTACTGGCCCG 62.740 63.158 0.00 0.00 37.74 6.13
202 203 4.452733 GCTCGCTACTGGCCCGTT 62.453 66.667 4.69 0.00 37.74 4.44
203 204 2.509336 CTCGCTACTGGCCCGTTG 60.509 66.667 4.69 4.54 37.74 4.10
204 205 4.077184 TCGCTACTGGCCCGTTGG 62.077 66.667 4.69 0.28 37.74 3.77
214 215 2.045438 CCCGTTGGCCTATGCACA 60.045 61.111 3.32 0.00 40.13 4.57
215 216 2.114670 CCCGTTGGCCTATGCACAG 61.115 63.158 3.32 0.00 40.13 3.66
216 217 1.377202 CCGTTGGCCTATGCACAGT 60.377 57.895 3.32 0.00 40.13 3.55
217 218 0.960364 CCGTTGGCCTATGCACAGTT 60.960 55.000 3.32 0.00 40.13 3.16
218 219 0.168788 CGTTGGCCTATGCACAGTTG 59.831 55.000 3.32 0.00 40.13 3.16
228 229 4.980903 CACAGTTGCGCGGTTGCC 62.981 66.667 8.83 0.00 38.08 4.52
230 231 3.047280 CAGTTGCGCGGTTGCCTA 61.047 61.111 8.83 0.00 38.08 3.93
231 232 3.047877 AGTTGCGCGGTTGCCTAC 61.048 61.111 8.83 0.00 38.08 3.18
232 233 4.097863 GTTGCGCGGTTGCCTACC 62.098 66.667 8.83 0.00 44.03 3.18
239 240 3.766691 GGTTGCCTACCCGAGCGA 61.767 66.667 0.00 0.00 41.43 4.93
240 241 2.508663 GTTGCCTACCCGAGCGAC 60.509 66.667 0.00 0.00 36.29 5.19
241 242 2.992689 TTGCCTACCCGAGCGACA 60.993 61.111 0.00 0.00 0.00 4.35
242 243 3.291101 TTGCCTACCCGAGCGACAC 62.291 63.158 0.00 0.00 0.00 3.67
243 244 3.755628 GCCTACCCGAGCGACACA 61.756 66.667 0.00 0.00 0.00 3.72
244 245 2.967397 CCTACCCGAGCGACACAA 59.033 61.111 0.00 0.00 0.00 3.33
245 246 1.153823 CCTACCCGAGCGACACAAG 60.154 63.158 0.00 0.00 0.00 3.16
246 247 1.585006 CTACCCGAGCGACACAAGT 59.415 57.895 0.00 0.00 0.00 3.16
247 248 0.732880 CTACCCGAGCGACACAAGTG 60.733 60.000 0.00 0.00 0.00 3.16
249 250 1.594293 CCCGAGCGACACAAGTGTT 60.594 57.895 7.35 0.00 45.05 3.32
250 251 1.564622 CCGAGCGACACAAGTGTTG 59.435 57.895 14.77 14.77 45.05 3.33
251 252 1.564622 CGAGCGACACAAGTGTTGG 59.435 57.895 19.27 10.69 45.05 3.77
255 256 2.875080 GCGACACAAGTGTTGGTATC 57.125 50.000 19.27 2.35 45.05 2.24
256 257 1.126113 GCGACACAAGTGTTGGTATCG 59.874 52.381 19.27 12.42 45.05 2.92
257 258 1.126113 CGACACAAGTGTTGGTATCGC 59.874 52.381 11.88 0.00 45.05 4.58
258 259 2.413837 GACACAAGTGTTGGTATCGCT 58.586 47.619 7.35 0.00 45.05 4.93
259 260 2.806244 GACACAAGTGTTGGTATCGCTT 59.194 45.455 7.35 0.00 45.05 4.68
264 265 2.076863 AGTGTTGGTATCGCTTGAAGC 58.923 47.619 7.20 7.20 38.02 3.86
275 276 1.438651 GCTTGAAGCGGTACATGTCA 58.561 50.000 0.00 0.00 0.00 3.58
276 277 1.128692 GCTTGAAGCGGTACATGTCAC 59.871 52.381 0.00 0.00 0.00 3.67
277 278 1.732259 CTTGAAGCGGTACATGTCACC 59.268 52.381 0.00 7.97 0.00 4.02
278 279 0.973632 TGAAGCGGTACATGTCACCT 59.026 50.000 0.00 0.00 33.62 4.00
279 280 1.067142 TGAAGCGGTACATGTCACCTC 60.067 52.381 0.00 4.08 33.62 3.85
280 281 0.249398 AAGCGGTACATGTCACCTCC 59.751 55.000 0.00 3.32 33.62 4.30
281 282 1.153429 GCGGTACATGTCACCTCCC 60.153 63.158 0.00 0.00 33.62 4.30
282 283 1.520666 CGGTACATGTCACCTCCCC 59.479 63.158 0.00 0.00 33.62 4.81
283 284 0.976073 CGGTACATGTCACCTCCCCT 60.976 60.000 0.00 0.00 33.62 4.79
284 285 0.831307 GGTACATGTCACCTCCCCTC 59.169 60.000 0.00 0.00 32.98 4.30
285 286 1.568504 GTACATGTCACCTCCCCTCA 58.431 55.000 0.00 0.00 0.00 3.86
286 287 1.482593 GTACATGTCACCTCCCCTCAG 59.517 57.143 0.00 0.00 0.00 3.35
287 288 0.911525 ACATGTCACCTCCCCTCAGG 60.912 60.000 0.00 0.00 39.80 3.86
292 293 4.488303 ACCTCCCCTCAGGTGATG 57.512 61.111 0.00 0.00 45.80 3.07
293 294 1.307343 ACCTCCCCTCAGGTGATGG 60.307 63.158 0.00 0.00 45.80 3.51
294 295 2.750657 CCTCCCCTCAGGTGATGGC 61.751 68.421 0.00 0.00 36.75 4.40
295 296 1.997311 CTCCCCTCAGGTGATGGCA 60.997 63.158 0.00 0.00 36.75 4.92
296 297 2.262774 CTCCCCTCAGGTGATGGCAC 62.263 65.000 0.00 0.00 44.39 5.01
297 298 2.605607 CCCCTCAGGTGATGGCACA 61.606 63.158 0.00 0.00 46.96 4.57
315 316 4.033894 CGGCATCGTCAATCCTCC 57.966 61.111 0.00 0.00 0.00 4.30
316 317 1.143838 CGGCATCGTCAATCCTCCA 59.856 57.895 0.00 0.00 0.00 3.86
317 318 0.877649 CGGCATCGTCAATCCTCCAG 60.878 60.000 0.00 0.00 0.00 3.86
318 319 0.533755 GGCATCGTCAATCCTCCAGG 60.534 60.000 0.00 0.00 0.00 4.45
319 320 0.533755 GCATCGTCAATCCTCCAGGG 60.534 60.000 0.00 0.00 35.41 4.45
320 321 0.533755 CATCGTCAATCCTCCAGGGC 60.534 60.000 0.00 0.00 35.41 5.19
321 322 0.982852 ATCGTCAATCCTCCAGGGCA 60.983 55.000 0.00 0.00 35.41 5.36
322 323 1.198094 TCGTCAATCCTCCAGGGCAA 61.198 55.000 0.00 0.00 35.41 4.52
323 324 1.026718 CGTCAATCCTCCAGGGCAAC 61.027 60.000 0.00 0.00 35.41 4.17
324 325 0.329596 GTCAATCCTCCAGGGCAACT 59.670 55.000 0.00 0.00 35.41 3.16
325 326 0.620556 TCAATCCTCCAGGGCAACTC 59.379 55.000 0.00 0.00 35.41 3.01
326 327 0.329261 CAATCCTCCAGGGCAACTCA 59.671 55.000 0.00 0.00 35.41 3.41
327 328 1.075601 AATCCTCCAGGGCAACTCAA 58.924 50.000 0.00 0.00 35.41 3.02
328 329 0.329596 ATCCTCCAGGGCAACTCAAC 59.670 55.000 0.00 0.00 35.41 3.18
329 330 1.303643 CCTCCAGGGCAACTCAACC 60.304 63.158 0.00 0.00 0.00 3.77
334 335 4.920828 GGGCAACTCAACCCTGAA 57.079 55.556 0.00 0.00 43.36 3.02
335 336 2.646121 GGGCAACTCAACCCTGAAG 58.354 57.895 0.00 0.00 43.36 3.02
336 337 0.178990 GGGCAACTCAACCCTGAAGT 60.179 55.000 0.00 0.00 43.36 3.01
337 338 1.692411 GGCAACTCAACCCTGAAGTT 58.308 50.000 0.00 0.00 0.00 2.66
338 339 1.609072 GGCAACTCAACCCTGAAGTTC 59.391 52.381 0.00 0.00 0.00 3.01
339 340 2.576615 GCAACTCAACCCTGAAGTTCT 58.423 47.619 4.17 0.00 0.00 3.01
340 341 2.952310 GCAACTCAACCCTGAAGTTCTT 59.048 45.455 4.17 0.00 0.00 2.52
341 342 3.243201 GCAACTCAACCCTGAAGTTCTTG 60.243 47.826 4.17 0.52 0.00 3.02
342 343 2.576615 ACTCAACCCTGAAGTTCTTGC 58.423 47.619 4.17 0.00 0.00 4.01
343 344 2.173569 ACTCAACCCTGAAGTTCTTGCT 59.826 45.455 4.17 0.00 0.00 3.91
344 345 2.551459 CTCAACCCTGAAGTTCTTGCTG 59.449 50.000 4.17 0.00 0.00 4.41
345 346 1.000938 CAACCCTGAAGTTCTTGCTGC 60.001 52.381 4.17 0.00 0.00 5.25
346 347 0.475906 ACCCTGAAGTTCTTGCTGCT 59.524 50.000 4.17 0.00 0.00 4.24
347 348 0.879765 CCCTGAAGTTCTTGCTGCTG 59.120 55.000 4.17 0.00 0.00 4.41
348 349 0.240411 CCTGAAGTTCTTGCTGCTGC 59.760 55.000 8.89 8.89 40.20 5.25
349 350 1.236628 CTGAAGTTCTTGCTGCTGCT 58.763 50.000 17.00 0.00 40.48 4.24
350 351 2.420642 CTGAAGTTCTTGCTGCTGCTA 58.579 47.619 17.00 8.35 40.48 3.49
351 352 2.146342 TGAAGTTCTTGCTGCTGCTAC 58.854 47.619 17.00 9.30 40.48 3.58
352 353 2.146342 GAAGTTCTTGCTGCTGCTACA 58.854 47.619 17.00 0.00 40.48 2.74
353 354 2.260844 AGTTCTTGCTGCTGCTACAA 57.739 45.000 17.00 4.52 40.48 2.41
354 355 2.787994 AGTTCTTGCTGCTGCTACAAT 58.212 42.857 17.00 0.00 40.48 2.71
355 356 2.486982 AGTTCTTGCTGCTGCTACAATG 59.513 45.455 17.00 0.00 40.48 2.82
356 357 2.477845 TCTTGCTGCTGCTACAATGA 57.522 45.000 17.00 1.59 40.48 2.57
357 358 2.781923 TCTTGCTGCTGCTACAATGAA 58.218 42.857 17.00 0.00 40.48 2.57
358 359 3.148412 TCTTGCTGCTGCTACAATGAAA 58.852 40.909 17.00 0.00 40.48 2.69
359 360 3.569277 TCTTGCTGCTGCTACAATGAAAA 59.431 39.130 17.00 0.00 40.48 2.29
360 361 3.287312 TGCTGCTGCTACAATGAAAAC 57.713 42.857 17.00 0.00 40.48 2.43
361 362 2.622470 TGCTGCTGCTACAATGAAAACA 59.378 40.909 17.00 0.00 40.48 2.83
362 363 2.982470 GCTGCTGCTACAATGAAAACAC 59.018 45.455 8.53 0.00 36.03 3.32
363 364 3.304928 GCTGCTGCTACAATGAAAACACT 60.305 43.478 8.53 0.00 36.03 3.55
364 365 4.083324 GCTGCTGCTACAATGAAAACACTA 60.083 41.667 8.53 0.00 36.03 2.74
365 366 5.611796 TGCTGCTACAATGAAAACACTAG 57.388 39.130 0.00 0.00 0.00 2.57
366 367 4.083324 TGCTGCTACAATGAAAACACTAGC 60.083 41.667 0.00 0.00 0.00 3.42
367 368 4.672801 GCTGCTACAATGAAAACACTAGCC 60.673 45.833 0.00 0.00 0.00 3.93
368 369 3.435327 TGCTACAATGAAAACACTAGCCG 59.565 43.478 0.00 0.00 0.00 5.52
369 370 2.989422 ACAATGAAAACACTAGCCGC 57.011 45.000 0.00 0.00 0.00 6.53
370 371 2.226330 ACAATGAAAACACTAGCCGCA 58.774 42.857 0.00 0.00 0.00 5.69
371 372 2.819608 ACAATGAAAACACTAGCCGCAT 59.180 40.909 0.00 0.00 0.00 4.73
372 373 3.255642 ACAATGAAAACACTAGCCGCATT 59.744 39.130 0.00 0.00 0.00 3.56
373 374 2.987413 TGAAAACACTAGCCGCATTG 57.013 45.000 0.00 0.00 0.00 2.82
374 375 2.226330 TGAAAACACTAGCCGCATTGT 58.774 42.857 0.00 0.00 0.00 2.71
375 376 2.621055 TGAAAACACTAGCCGCATTGTT 59.379 40.909 0.00 0.00 33.59 2.83
376 377 3.067461 TGAAAACACTAGCCGCATTGTTT 59.933 39.130 9.87 9.87 42.55 2.83
377 378 2.704725 AACACTAGCCGCATTGTTTG 57.295 45.000 0.00 0.00 0.00 2.93
378 379 0.881118 ACACTAGCCGCATTGTTTGG 59.119 50.000 0.00 0.00 0.00 3.28
379 380 0.171007 CACTAGCCGCATTGTTTGGG 59.829 55.000 0.00 0.00 37.99 4.12
388 389 4.032703 CGCATTGTTTGGGGAATAGAAG 57.967 45.455 0.00 0.00 34.74 2.85
389 390 3.694072 CGCATTGTTTGGGGAATAGAAGA 59.306 43.478 0.00 0.00 34.74 2.87
390 391 4.157656 CGCATTGTTTGGGGAATAGAAGAA 59.842 41.667 0.00 0.00 34.74 2.52
391 392 5.336372 CGCATTGTTTGGGGAATAGAAGAAA 60.336 40.000 0.00 0.00 34.74 2.52
392 393 6.627953 CGCATTGTTTGGGGAATAGAAGAAAT 60.628 38.462 0.00 0.00 34.74 2.17
393 394 6.536224 GCATTGTTTGGGGAATAGAAGAAATG 59.464 38.462 0.00 0.00 0.00 2.32
394 395 6.603940 TTGTTTGGGGAATAGAAGAAATGG 57.396 37.500 0.00 0.00 0.00 3.16
395 396 4.466015 TGTTTGGGGAATAGAAGAAATGGC 59.534 41.667 0.00 0.00 0.00 4.40
396 397 4.329638 TTGGGGAATAGAAGAAATGGCA 57.670 40.909 0.00 0.00 0.00 4.92
397 398 4.541250 TGGGGAATAGAAGAAATGGCAT 57.459 40.909 0.00 0.00 0.00 4.40
398 399 4.473444 TGGGGAATAGAAGAAATGGCATC 58.527 43.478 0.00 0.00 0.00 3.91
399 400 4.168675 TGGGGAATAGAAGAAATGGCATCT 59.831 41.667 0.00 0.00 0.00 2.90
400 401 5.143369 GGGGAATAGAAGAAATGGCATCTT 58.857 41.667 0.00 0.89 39.76 2.40
407 408 5.397142 GAAGAAATGGCATCTTCTTGGTT 57.603 39.130 27.12 13.77 45.96 3.67
408 409 6.515272 GAAGAAATGGCATCTTCTTGGTTA 57.485 37.500 27.12 0.00 45.96 2.85
409 410 6.916360 AAGAAATGGCATCTTCTTGGTTAA 57.084 33.333 24.09 0.00 39.76 2.01
410 411 6.916360 AGAAATGGCATCTTCTTGGTTAAA 57.084 33.333 14.90 0.00 0.00 1.52
411 412 7.301868 AGAAATGGCATCTTCTTGGTTAAAA 57.698 32.000 14.90 0.00 0.00 1.52
412 413 7.734942 AGAAATGGCATCTTCTTGGTTAAAAA 58.265 30.769 14.90 0.00 0.00 1.94
413 414 7.874528 AGAAATGGCATCTTCTTGGTTAAAAAG 59.125 33.333 14.90 0.00 0.00 2.27
414 415 5.467035 TGGCATCTTCTTGGTTAAAAAGG 57.533 39.130 0.00 0.00 0.00 3.11
415 416 4.898861 TGGCATCTTCTTGGTTAAAAAGGT 59.101 37.500 0.00 0.00 0.00 3.50
416 417 5.365314 TGGCATCTTCTTGGTTAAAAAGGTT 59.635 36.000 0.00 0.00 0.00 3.50
417 418 5.926542 GGCATCTTCTTGGTTAAAAAGGTTC 59.073 40.000 0.00 0.00 0.00 3.62
418 419 6.462347 GGCATCTTCTTGGTTAAAAAGGTTCA 60.462 38.462 0.00 0.00 0.00 3.18
419 420 7.154656 GCATCTTCTTGGTTAAAAAGGTTCAT 58.845 34.615 0.61 0.00 0.00 2.57
420 421 7.657354 GCATCTTCTTGGTTAAAAAGGTTCATT 59.343 33.333 0.61 0.00 0.00 2.57
421 422 9.546428 CATCTTCTTGGTTAAAAAGGTTCATTT 57.454 29.630 0.61 0.00 0.00 2.32
423 424 9.952030 TCTTCTTGGTTAAAAAGGTTCATTTTT 57.048 25.926 11.49 11.49 43.10 1.94
444 445 6.647334 TTTTTACCATGTGACATGTGTGAT 57.353 33.333 22.62 6.76 0.00 3.06
445 446 7.751768 TTTTTACCATGTGACATGTGTGATA 57.248 32.000 22.62 10.23 0.00 2.15
446 447 7.751768 TTTTACCATGTGACATGTGTGATAA 57.248 32.000 22.62 10.77 0.00 1.75
447 448 6.983474 TTACCATGTGACATGTGTGATAAG 57.017 37.500 22.62 8.44 0.00 1.73
448 449 3.691118 ACCATGTGACATGTGTGATAAGC 59.309 43.478 22.62 0.00 0.00 3.09
449 450 3.690628 CCATGTGACATGTGTGATAAGCA 59.309 43.478 22.62 0.00 0.00 3.91
450 451 4.156373 CCATGTGACATGTGTGATAAGCAA 59.844 41.667 22.62 0.00 0.00 3.91
451 452 5.163591 CCATGTGACATGTGTGATAAGCAAT 60.164 40.000 22.62 0.00 0.00 3.56
452 453 5.550232 TGTGACATGTGTGATAAGCAATC 57.450 39.130 1.15 0.00 34.93 2.67
453 454 4.395854 TGTGACATGTGTGATAAGCAATCC 59.604 41.667 1.15 0.00 33.22 3.01
454 455 3.622612 TGACATGTGTGATAAGCAATCCG 59.377 43.478 1.15 0.00 33.22 4.18
455 456 3.871006 GACATGTGTGATAAGCAATCCGA 59.129 43.478 1.15 0.00 33.22 4.55
456 457 4.260985 ACATGTGTGATAAGCAATCCGAA 58.739 39.130 0.00 0.00 33.22 4.30
457 458 4.094887 ACATGTGTGATAAGCAATCCGAAC 59.905 41.667 0.00 0.00 33.22 3.95
458 459 3.937814 TGTGTGATAAGCAATCCGAACT 58.062 40.909 0.00 0.00 33.22 3.01
459 460 5.079689 TGTGTGATAAGCAATCCGAACTA 57.920 39.130 0.00 0.00 33.22 2.24
460 461 5.109210 TGTGTGATAAGCAATCCGAACTAG 58.891 41.667 0.00 0.00 33.22 2.57
461 462 5.109903 GTGTGATAAGCAATCCGAACTAGT 58.890 41.667 0.00 0.00 33.22 2.57
462 463 5.232414 GTGTGATAAGCAATCCGAACTAGTC 59.768 44.000 0.00 0.00 33.22 2.59
463 464 4.745620 GTGATAAGCAATCCGAACTAGTCC 59.254 45.833 0.00 0.00 33.22 3.85
464 465 4.404394 TGATAAGCAATCCGAACTAGTCCA 59.596 41.667 0.00 0.00 33.22 4.02
465 466 3.914426 AAGCAATCCGAACTAGTCCAT 57.086 42.857 0.00 0.00 0.00 3.41
466 467 3.460857 AGCAATCCGAACTAGTCCATC 57.539 47.619 0.00 0.00 0.00 3.51
467 468 2.103263 AGCAATCCGAACTAGTCCATCC 59.897 50.000 0.00 0.00 0.00 3.51
468 469 2.743938 CAATCCGAACTAGTCCATCCG 58.256 52.381 0.00 0.00 0.00 4.18
469 470 2.068834 ATCCGAACTAGTCCATCCGT 57.931 50.000 0.00 0.00 0.00 4.69
470 471 1.386533 TCCGAACTAGTCCATCCGTC 58.613 55.000 0.00 0.00 0.00 4.79
471 472 0.384669 CCGAACTAGTCCATCCGTCC 59.615 60.000 0.00 0.00 0.00 4.79
472 473 0.384669 CGAACTAGTCCATCCGTCCC 59.615 60.000 0.00 0.00 0.00 4.46
473 474 1.481871 GAACTAGTCCATCCGTCCCA 58.518 55.000 0.00 0.00 0.00 4.37
474 475 1.829222 GAACTAGTCCATCCGTCCCAA 59.171 52.381 0.00 0.00 0.00 4.12
475 476 1.946984 ACTAGTCCATCCGTCCCAAA 58.053 50.000 0.00 0.00 0.00 3.28
476 477 2.478292 ACTAGTCCATCCGTCCCAAAT 58.522 47.619 0.00 0.00 0.00 2.32
477 478 2.844348 ACTAGTCCATCCGTCCCAAATT 59.156 45.455 0.00 0.00 0.00 1.82
478 479 2.899303 AGTCCATCCGTCCCAAATTT 57.101 45.000 0.00 0.00 0.00 1.82
479 480 2.723273 AGTCCATCCGTCCCAAATTTC 58.277 47.619 0.00 0.00 0.00 2.17
480 481 2.308866 AGTCCATCCGTCCCAAATTTCT 59.691 45.455 0.00 0.00 0.00 2.52
481 482 3.089284 GTCCATCCGTCCCAAATTTCTT 58.911 45.455 0.00 0.00 0.00 2.52
482 483 3.088532 TCCATCCGTCCCAAATTTCTTG 58.911 45.455 0.00 0.00 0.00 3.02
483 484 2.825532 CCATCCGTCCCAAATTTCTTGT 59.174 45.455 0.00 0.00 0.00 3.16
484 485 3.119495 CCATCCGTCCCAAATTTCTTGTC 60.119 47.826 0.00 0.00 0.00 3.18
485 486 3.502123 TCCGTCCCAAATTTCTTGTCT 57.498 42.857 0.00 0.00 0.00 3.41
486 487 3.827722 TCCGTCCCAAATTTCTTGTCTT 58.172 40.909 0.00 0.00 0.00 3.01
487 488 4.975631 TCCGTCCCAAATTTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
488 489 5.378332 TCCGTCCCAAATTTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
489 490 5.828859 TCCGTCCCAAATTTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
490 491 6.492087 TCCGTCCCAAATTTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
491 492 7.014808 TCCGTCCCAAATTTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 36.98 1.82
492 493 7.655732 CCGTCCCAAATTTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 42.88 1.82
515 516 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
516 517 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
517 518 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
518 519 8.638873 TGTCTAAATACGGATGTATCAAGTCAT 58.361 33.333 0.00 0.00 40.42 3.06
519 520 8.916654 GTCTAAATACGGATGTATCAAGTCATG 58.083 37.037 0.00 0.00 40.42 3.07
520 521 8.638873 TCTAAATACGGATGTATCAAGTCATGT 58.361 33.333 0.00 0.00 40.42 3.21
521 522 9.261180 CTAAATACGGATGTATCAAGTCATGTT 57.739 33.333 0.00 0.00 40.42 2.71
522 523 8.506168 AAATACGGATGTATCAAGTCATGTTT 57.494 30.769 0.00 0.00 40.42 2.83
523 524 8.506168 AATACGGATGTATCAAGTCATGTTTT 57.494 30.769 0.00 0.00 40.42 2.43
524 525 9.607988 AATACGGATGTATCAAGTCATGTTTTA 57.392 29.630 0.00 0.00 40.42 1.52
525 526 7.539712 ACGGATGTATCAAGTCATGTTTTAG 57.460 36.000 0.00 0.00 0.00 1.85
526 527 7.103641 ACGGATGTATCAAGTCATGTTTTAGT 58.896 34.615 0.00 0.00 0.00 2.24
527 528 8.255206 ACGGATGTATCAAGTCATGTTTTAGTA 58.745 33.333 0.00 0.00 0.00 1.82
528 529 9.261180 CGGATGTATCAAGTCATGTTTTAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
572 573 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
573 574 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
574 575 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
575 576 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
576 577 6.945938 TTTAAGACAAGAATTTTGGGACGA 57.054 33.333 0.00 0.00 0.00 4.20
577 578 6.945938 TTAAGACAAGAATTTTGGGACGAA 57.054 33.333 0.00 0.00 0.00 3.85
578 579 5.438761 AAGACAAGAATTTTGGGACGAAG 57.561 39.130 0.00 0.00 0.00 3.79
579 580 3.821033 AGACAAGAATTTTGGGACGAAGG 59.179 43.478 0.00 0.00 0.00 3.46
580 581 2.890945 ACAAGAATTTTGGGACGAAGGG 59.109 45.455 0.00 0.00 0.00 3.95
581 582 3.153919 CAAGAATTTTGGGACGAAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
582 583 3.073274 AGAATTTTGGGACGAAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
583 584 2.375509 AGAATTTTGGGACGAAGGGAGT 59.624 45.455 0.00 0.00 0.00 3.85
584 585 3.585732 AGAATTTTGGGACGAAGGGAGTA 59.414 43.478 0.00 0.00 0.00 2.59
585 586 4.227527 AGAATTTTGGGACGAAGGGAGTAT 59.772 41.667 0.00 0.00 0.00 2.12
586 587 4.586306 ATTTTGGGACGAAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
587 588 5.703730 ATTTTGGGACGAAGGGAGTATTA 57.296 39.130 0.00 0.00 0.00 0.98
638 639 1.672356 ATCAACGCCCTGCAGTGAC 60.672 57.895 13.81 0.05 0.00 3.67
760 770 4.641645 CAGGGCGCAGGAACCACA 62.642 66.667 10.83 0.00 0.00 4.17
811 822 2.606213 TCACCCGAGGCCACATCA 60.606 61.111 5.01 0.00 0.00 3.07
824 835 0.670546 CACATCACCACCGTCCACTC 60.671 60.000 0.00 0.00 0.00 3.51
861 872 1.303317 CAAACCCACCTTCCCTCCG 60.303 63.158 0.00 0.00 0.00 4.63
940 952 1.439679 CGCCTATTAAATCCTCCCGC 58.560 55.000 0.00 0.00 0.00 6.13
941 953 1.002087 CGCCTATTAAATCCTCCCGCT 59.998 52.381 0.00 0.00 0.00 5.52
942 954 2.701107 GCCTATTAAATCCTCCCGCTC 58.299 52.381 0.00 0.00 0.00 5.03
1000 1012 1.445095 CAGATCCCCCAAGAGCTCG 59.555 63.158 8.37 0.00 27.62 5.03
1002 1014 2.688666 ATCCCCCAAGAGCTCGCA 60.689 61.111 8.37 0.00 0.00 5.10
1348 1360 1.321074 CCTACCTCGTCGGGCTCTTT 61.321 60.000 0.00 0.00 36.97 2.52
1490 3631 5.337652 GGTGTAGAGGTGTTAGCTTCTGAAT 60.338 44.000 0.00 0.00 0.00 2.57
1567 3711 1.803334 TCGTGGCTGTGTTATGTTCC 58.197 50.000 0.00 0.00 0.00 3.62
1571 3717 2.884639 GTGGCTGTGTTATGTTCCTGTT 59.115 45.455 0.00 0.00 0.00 3.16
1624 3772 4.100529 CAGCAATGAAAAGTTGGCTATCG 58.899 43.478 0.00 0.00 0.00 2.92
1635 3783 4.636249 AGTTGGCTATCGGATCTGAATTC 58.364 43.478 8.65 0.00 0.00 2.17
1642 3790 2.897436 TCGGATCTGAATTCTGTGCTG 58.103 47.619 0.39 8.02 0.00 4.41
1646 3794 4.507710 GGATCTGAATTCTGTGCTGTGTA 58.492 43.478 7.05 0.00 0.00 2.90
1657 3811 4.637977 TCTGTGCTGTGTATTTGTTTGTCA 59.362 37.500 0.00 0.00 0.00 3.58
1658 3812 4.919206 TGTGCTGTGTATTTGTTTGTCAG 58.081 39.130 0.00 0.00 0.00 3.51
1659 3813 4.397730 TGTGCTGTGTATTTGTTTGTCAGT 59.602 37.500 0.00 0.00 0.00 3.41
1675 3829 0.883833 CAGTGTGATCTTGCCCCAAC 59.116 55.000 0.00 0.00 0.00 3.77
1680 3834 2.238521 GTGATCTTGCCCCAACTTTGA 58.761 47.619 0.00 0.00 0.00 2.69
1682 3836 2.627699 TGATCTTGCCCCAACTTTGAAC 59.372 45.455 0.00 0.00 0.00 3.18
1702 3857 4.467198 ACGGAAGTTGGATTACTGGTAG 57.533 45.455 0.00 0.00 46.40 3.18
1703 3858 3.195661 CGGAAGTTGGATTACTGGTAGC 58.804 50.000 0.00 0.00 0.00 3.58
1706 3861 4.876679 GGAAGTTGGATTACTGGTAGCTTC 59.123 45.833 0.00 0.00 0.00 3.86
1709 3864 4.113354 GTTGGATTACTGGTAGCTTCGAG 58.887 47.826 0.00 0.00 0.00 4.04
1731 3886 2.031870 GTCAACTGAAAGCCCCAAACT 58.968 47.619 0.00 0.00 37.60 2.66
1741 3896 1.207811 AGCCCCAAACTAATTGCATGC 59.792 47.619 11.82 11.82 37.73 4.06
1754 3909 1.665599 GCATGCCACCTTTGTGTGC 60.666 57.895 6.36 0.00 41.09 4.57
1765 3920 3.817647 ACCTTTGTGTGCTTCTGAATCTC 59.182 43.478 0.00 0.00 0.00 2.75
1767 3922 4.320057 CCTTTGTGTGCTTCTGAATCTCAC 60.320 45.833 15.59 15.59 0.00 3.51
1768 3923 3.473923 TGTGTGCTTCTGAATCTCACA 57.526 42.857 19.25 19.25 35.57 3.58
1769 3924 3.396560 TGTGTGCTTCTGAATCTCACAG 58.603 45.455 19.25 0.00 38.19 3.66
1770 3925 3.070015 TGTGTGCTTCTGAATCTCACAGA 59.930 43.478 19.25 14.89 41.70 3.41
1772 3927 3.070015 TGTGCTTCTGAATCTCACAGACA 59.930 43.478 12.89 0.00 42.84 3.41
1773 3928 4.060900 GTGCTTCTGAATCTCACAGACAA 58.939 43.478 0.00 0.00 42.84 3.18
1774 3929 4.512944 GTGCTTCTGAATCTCACAGACAAA 59.487 41.667 0.00 0.00 42.84 2.83
1775 3930 4.512944 TGCTTCTGAATCTCACAGACAAAC 59.487 41.667 0.00 0.00 42.84 2.93
1776 3931 4.083590 GCTTCTGAATCTCACAGACAAACC 60.084 45.833 0.00 0.00 42.84 3.27
1777 3932 4.687901 TCTGAATCTCACAGACAAACCA 57.312 40.909 0.00 0.00 39.10 3.67
1778 3933 5.034852 TCTGAATCTCACAGACAAACCAA 57.965 39.130 0.00 0.00 39.10 3.67
1779 3934 5.624159 TCTGAATCTCACAGACAAACCAAT 58.376 37.500 0.00 0.00 39.10 3.16
1780 3935 6.064060 TCTGAATCTCACAGACAAACCAATT 58.936 36.000 0.00 0.00 39.10 2.32
1781 3936 6.016860 TCTGAATCTCACAGACAAACCAATTG 60.017 38.462 0.00 0.00 39.10 2.32
1782 3937 3.988379 TCTCACAGACAAACCAATTGC 57.012 42.857 0.00 0.00 43.13 3.56
1783 3938 3.286353 TCTCACAGACAAACCAATTGCA 58.714 40.909 0.00 0.00 43.13 4.08
1784 3939 3.890756 TCTCACAGACAAACCAATTGCAT 59.109 39.130 0.00 0.00 43.13 3.96
1785 3940 4.341806 TCTCACAGACAAACCAATTGCATT 59.658 37.500 0.00 0.00 43.13 3.56
1786 3941 5.534278 TCTCACAGACAAACCAATTGCATTA 59.466 36.000 0.00 0.00 43.13 1.90
1787 3942 5.527951 TCACAGACAAACCAATTGCATTAC 58.472 37.500 0.00 0.00 43.13 1.89
1788 3943 5.301551 TCACAGACAAACCAATTGCATTACT 59.698 36.000 0.00 0.00 43.13 2.24
1789 3944 5.403166 CACAGACAAACCAATTGCATTACTG 59.597 40.000 0.00 11.33 43.13 2.74
1790 3945 4.925054 CAGACAAACCAATTGCATTACTGG 59.075 41.667 0.00 0.00 43.13 4.00
1791 3946 4.588528 AGACAAACCAATTGCATTACTGGT 59.411 37.500 0.00 4.23 44.12 4.00
1792 3947 5.772672 AGACAAACCAATTGCATTACTGGTA 59.227 36.000 0.00 0.00 41.36 3.25
1793 3948 6.437162 AGACAAACCAATTGCATTACTGGTAT 59.563 34.615 0.00 1.01 41.36 2.73
1794 3949 7.003402 ACAAACCAATTGCATTACTGGTATT 57.997 32.000 0.00 5.06 41.36 1.89
1795 3950 7.449247 ACAAACCAATTGCATTACTGGTATTT 58.551 30.769 0.00 0.91 41.36 1.40
1796 3951 7.936301 ACAAACCAATTGCATTACTGGTATTTT 59.064 29.630 0.00 0.36 41.36 1.82
1797 3952 8.442384 CAAACCAATTGCATTACTGGTATTTTC 58.558 33.333 0.00 0.00 41.36 2.29
1798 3953 6.329496 ACCAATTGCATTACTGGTATTTTCG 58.671 36.000 0.00 0.00 40.42 3.46
1799 3954 6.151985 ACCAATTGCATTACTGGTATTTTCGA 59.848 34.615 0.00 0.00 40.42 3.71
1800 3955 7.147915 ACCAATTGCATTACTGGTATTTTCGAT 60.148 33.333 0.00 0.00 40.42 3.59
1801 3956 7.706179 CCAATTGCATTACTGGTATTTTCGATT 59.294 33.333 0.00 0.00 0.00 3.34
1802 3957 8.533965 CAATTGCATTACTGGTATTTTCGATTG 58.466 33.333 0.00 0.00 0.00 2.67
1803 3958 6.751514 TGCATTACTGGTATTTTCGATTGT 57.248 33.333 0.00 0.00 0.00 2.71
1804 3959 6.781138 TGCATTACTGGTATTTTCGATTGTC 58.219 36.000 0.00 0.00 0.00 3.18
1805 3960 6.372937 TGCATTACTGGTATTTTCGATTGTCA 59.627 34.615 0.00 0.00 0.00 3.58
1806 3961 7.094592 TGCATTACTGGTATTTTCGATTGTCAA 60.095 33.333 0.00 0.00 0.00 3.18
1807 3962 7.915397 GCATTACTGGTATTTTCGATTGTCAAT 59.085 33.333 0.00 0.00 0.00 2.57
1808 3963 9.787532 CATTACTGGTATTTTCGATTGTCAATT 57.212 29.630 0.00 0.00 0.00 2.32
1809 3964 9.787532 ATTACTGGTATTTTCGATTGTCAATTG 57.212 29.630 6.47 6.47 0.00 2.32
1810 3965 7.447374 ACTGGTATTTTCGATTGTCAATTGA 57.553 32.000 10.94 10.94 0.00 2.57
1811 3966 7.881142 ACTGGTATTTTCGATTGTCAATTGAA 58.119 30.769 20.09 20.09 39.05 2.69
1812 3967 8.356657 ACTGGTATTTTCGATTGTCAATTGAAA 58.643 29.630 26.87 26.87 45.17 2.69
1813 3968 9.357652 CTGGTATTTTCGATTGTCAATTGAAAT 57.642 29.630 29.33 22.90 45.77 2.17
1818 3973 9.912634 ATTTTCGATTGTCAATTGAAATAGTGT 57.087 25.926 29.33 16.62 45.77 3.55
1819 3974 8.726650 TTTCGATTGTCAATTGAAATAGTGTG 57.273 30.769 26.87 0.00 43.14 3.82
1820 3975 7.433708 TCGATTGTCAATTGAAATAGTGTGT 57.566 32.000 10.35 0.00 0.00 3.72
1821 3976 7.518161 TCGATTGTCAATTGAAATAGTGTGTC 58.482 34.615 10.35 0.00 0.00 3.67
1822 3977 6.462636 CGATTGTCAATTGAAATAGTGTGTCG 59.537 38.462 10.35 7.53 0.00 4.35
1823 3978 5.605564 TGTCAATTGAAATAGTGTGTCGG 57.394 39.130 10.35 0.00 0.00 4.79
1824 3979 5.060506 TGTCAATTGAAATAGTGTGTCGGT 58.939 37.500 10.35 0.00 0.00 4.69
1825 3980 6.224584 TGTCAATTGAAATAGTGTGTCGGTA 58.775 36.000 10.35 0.00 0.00 4.02
1829 3984 9.607988 TCAATTGAAATAGTGTGTCGGTATTAT 57.392 29.630 5.45 0.00 0.00 1.28
1835 3990 3.793559 AGTGTGTCGGTATTATTCCTGC 58.206 45.455 0.00 0.00 0.00 4.85
1841 3996 4.196971 GTCGGTATTATTCCTGCCTGTTT 58.803 43.478 0.00 0.00 0.00 2.83
1842 3997 4.035208 GTCGGTATTATTCCTGCCTGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
1846 4001 5.417580 GGTATTATTCCTGCCTGTTTGTTGA 59.582 40.000 0.00 0.00 0.00 3.18
1850 4005 7.716799 TTATTCCTGCCTGTTTGTTGATAAT 57.283 32.000 0.00 0.00 0.00 1.28
1853 4008 8.995027 ATTCCTGCCTGTTTGTTGATAATATA 57.005 30.769 0.00 0.00 0.00 0.86
1854 4009 8.815565 TTCCTGCCTGTTTGTTGATAATATAA 57.184 30.769 0.00 0.00 0.00 0.98
1855 4010 8.995027 TCCTGCCTGTTTGTTGATAATATAAT 57.005 30.769 0.00 0.00 0.00 1.28
1858 4013 9.811655 CTGCCTGTTTGTTGATAATATAATACG 57.188 33.333 0.00 0.00 0.00 3.06
1861 4016 8.999431 CCTGTTTGTTGATAATATAATACGGCT 58.001 33.333 0.00 0.00 0.00 5.52
1902 4123 1.003839 TTACAGACGGCCTTGCAGG 60.004 57.895 0.00 0.00 38.80 4.85
1905 4126 2.110967 CAGACGGCCTTGCAGGATG 61.111 63.158 0.00 0.00 37.67 3.51
1906 4127 2.045926 GACGGCCTTGCAGGATGT 60.046 61.111 0.00 0.00 37.67 3.06
1907 4128 2.360350 ACGGCCTTGCAGGATGTG 60.360 61.111 0.00 0.00 37.67 3.21
1908 4129 2.360350 CGGCCTTGCAGGATGTGT 60.360 61.111 0.00 0.00 37.67 3.72
1909 4130 1.973281 CGGCCTTGCAGGATGTGTT 60.973 57.895 0.00 0.00 37.67 3.32
1910 4131 1.588082 GGCCTTGCAGGATGTGTTG 59.412 57.895 0.00 0.00 37.67 3.33
1911 4132 1.080298 GCCTTGCAGGATGTGTTGC 60.080 57.895 0.00 0.00 37.67 4.17
1912 4133 1.530013 GCCTTGCAGGATGTGTTGCT 61.530 55.000 0.00 0.00 37.67 3.91
1913 4134 0.242825 CCTTGCAGGATGTGTTGCTG 59.757 55.000 0.00 0.00 45.96 4.41
1934 4155 4.858850 TGCTGTCCTGAACCATGATATTT 58.141 39.130 0.00 0.00 0.00 1.40
1937 4158 5.591877 GCTGTCCTGAACCATGATATTTTCT 59.408 40.000 0.00 0.00 0.00 2.52
1938 4159 6.767902 GCTGTCCTGAACCATGATATTTTCTA 59.232 38.462 0.00 0.00 0.00 2.10
1939 4160 7.446625 GCTGTCCTGAACCATGATATTTTCTAT 59.553 37.037 0.00 0.00 0.00 1.98
1940 4161 8.908786 TGTCCTGAACCATGATATTTTCTATC 57.091 34.615 0.00 0.00 0.00 2.08
1941 4162 8.717717 TGTCCTGAACCATGATATTTTCTATCT 58.282 33.333 0.00 0.00 0.00 1.98
1963 4184 7.681939 TCTATAACACCTGTTCAAAATGACC 57.318 36.000 0.00 0.00 39.31 4.02
1965 4186 4.654091 AACACCTGTTCAAAATGACCTG 57.346 40.909 0.00 0.00 31.64 4.00
1966 4187 3.897239 ACACCTGTTCAAAATGACCTGA 58.103 40.909 0.00 0.00 0.00 3.86
1969 4190 4.520111 CACCTGTTCAAAATGACCTGATCA 59.480 41.667 0.00 0.00 43.13 2.92
1970 4191 4.763793 ACCTGTTCAAAATGACCTGATCAG 59.236 41.667 16.24 16.24 41.91 2.90
1971 4192 5.005740 CCTGTTCAAAATGACCTGATCAGA 58.994 41.667 24.62 4.53 41.91 3.27
1972 4193 5.474532 CCTGTTCAAAATGACCTGATCAGAA 59.525 40.000 24.62 9.56 41.91 3.02
1973 4194 6.152323 CCTGTTCAAAATGACCTGATCAGAAT 59.848 38.462 24.62 11.65 41.91 2.40
1974 4195 7.337689 CCTGTTCAAAATGACCTGATCAGAATA 59.662 37.037 24.62 9.52 41.91 1.75
2019 4485 2.368439 TCCAATCTGAGCCCATTTTCG 58.632 47.619 0.00 0.00 0.00 3.46
2041 4507 7.647907 TCGTCTCCTGAACAAATAAAAGTAC 57.352 36.000 0.00 0.00 0.00 2.73
2042 4508 7.439381 TCGTCTCCTGAACAAATAAAAGTACT 58.561 34.615 0.00 0.00 0.00 2.73
2043 4509 7.384115 TCGTCTCCTGAACAAATAAAAGTACTG 59.616 37.037 0.00 0.00 0.00 2.74
2044 4510 7.170998 CGTCTCCTGAACAAATAAAAGTACTGT 59.829 37.037 0.00 0.00 0.00 3.55
2045 4511 9.485206 GTCTCCTGAACAAATAAAAGTACTGTA 57.515 33.333 0.00 0.00 0.00 2.74
2201 4668 4.514441 GCATTGGGTATGTCATTCTCTGAG 59.486 45.833 0.00 0.00 36.57 3.35
2220 4687 0.177604 GCTCTGAGGTGTCTGATGGG 59.822 60.000 6.83 0.00 30.89 4.00
2250 4717 2.293677 ACTCGTCACTGGTTCACTGTAG 59.706 50.000 0.00 0.00 0.00 2.74
2273 4740 2.164422 CGTCATTCTGAGCAGGACTACA 59.836 50.000 0.00 0.00 0.00 2.74
2274 4741 3.367395 CGTCATTCTGAGCAGGACTACAA 60.367 47.826 0.00 0.00 0.00 2.41
2287 4754 3.707102 AGGACTACAAGAGTAATGGCTCC 59.293 47.826 0.00 0.00 39.06 4.70
2290 4757 5.028549 ACTACAAGAGTAATGGCTCCATG 57.971 43.478 1.59 0.00 36.27 3.66
2296 4767 5.643421 AGAGTAATGGCTCCATGAAAGAT 57.357 39.130 1.59 0.00 36.68 2.40
2350 4827 5.582689 AACTAATAGCCATTCAAAGCACC 57.417 39.130 0.00 0.00 0.00 5.01
2439 4920 6.403200 CGCAGTACAAGCCTAAATACACAAAT 60.403 38.462 0.00 0.00 0.00 2.32
2532 5013 2.017049 GGTGTGAAATCCCCTCAATCG 58.983 52.381 0.00 0.00 0.00 3.34
2557 5038 5.235850 TGTTATCCAGGCAGTCAAAACTA 57.764 39.130 0.00 0.00 33.25 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.577110 GCTCATGAAATTGAATACATTCTTGAA 57.423 29.630 0.00 0.00 36.30 2.69
51 52 8.963725 AGCTCATGAAATTGAATACATTCTTGA 58.036 29.630 0.00 6.53 37.67 3.02
52 53 9.582431 AAGCTCATGAAATTGAATACATTCTTG 57.418 29.630 0.00 0.00 37.67 3.02
62 63 8.967218 CGAGTTTTAAAAGCTCATGAAATTGAA 58.033 29.630 20.55 0.00 0.00 2.69
63 64 7.114811 GCGAGTTTTAAAAGCTCATGAAATTGA 59.885 33.333 20.55 0.00 0.00 2.57
64 65 7.096106 TGCGAGTTTTAAAAGCTCATGAAATTG 60.096 33.333 20.55 9.87 0.00 2.32
65 66 6.922957 TGCGAGTTTTAAAAGCTCATGAAATT 59.077 30.769 20.55 0.00 0.00 1.82
66 67 6.446318 TGCGAGTTTTAAAAGCTCATGAAAT 58.554 32.000 20.55 0.00 0.00 2.17
67 68 5.826586 TGCGAGTTTTAAAAGCTCATGAAA 58.173 33.333 20.55 0.00 0.00 2.69
68 69 5.431420 TGCGAGTTTTAAAAGCTCATGAA 57.569 34.783 20.55 6.65 0.00 2.57
69 70 5.627499 ATGCGAGTTTTAAAAGCTCATGA 57.373 34.783 20.55 0.00 0.00 3.07
70 71 6.695292 AAATGCGAGTTTTAAAAGCTCATG 57.305 33.333 20.55 12.07 0.00 3.07
71 72 7.713764 AAAAATGCGAGTTTTAAAAGCTCAT 57.286 28.000 20.55 12.45 31.43 2.90
101 102 9.689976 TCACAACATCAAATCAAATTAACGAAT 57.310 25.926 0.00 0.00 0.00 3.34
102 103 9.689976 ATCACAACATCAAATCAAATTAACGAA 57.310 25.926 0.00 0.00 0.00 3.85
103 104 9.689976 AATCACAACATCAAATCAAATTAACGA 57.310 25.926 0.00 0.00 0.00 3.85
163 164 1.371758 GCTCAAGTCTGTCGCGACA 60.372 57.895 36.96 36.96 39.32 4.35
164 165 0.939577 TTGCTCAAGTCTGTCGCGAC 60.940 55.000 31.66 31.66 0.00 5.19
165 166 0.038251 ATTGCTCAAGTCTGTCGCGA 60.038 50.000 3.71 3.71 0.00 5.87
166 167 0.094216 CATTGCTCAAGTCTGTCGCG 59.906 55.000 0.00 0.00 0.00 5.87
167 168 0.179205 GCATTGCTCAAGTCTGTCGC 60.179 55.000 0.16 0.00 0.00 5.19
168 169 1.436600 AGCATTGCTCAAGTCTGTCG 58.563 50.000 5.03 0.00 30.62 4.35
181 182 2.182842 GGGCCAGTAGCGAGCATTG 61.183 63.158 4.39 0.00 45.17 2.82
182 183 2.190578 GGGCCAGTAGCGAGCATT 59.809 61.111 4.39 0.00 45.17 3.56
183 184 4.227134 CGGGCCAGTAGCGAGCAT 62.227 66.667 4.39 0.00 45.17 3.79
185 186 4.452733 AACGGGCCAGTAGCGAGC 62.453 66.667 9.60 0.00 45.17 5.03
186 187 2.509336 CAACGGGCCAGTAGCGAG 60.509 66.667 9.60 0.00 45.17 5.03
187 188 4.077184 CCAACGGGCCAGTAGCGA 62.077 66.667 9.60 0.00 45.17 4.93
197 198 2.045438 TGTGCATAGGCCAACGGG 60.045 61.111 5.01 0.00 40.13 5.28
198 199 0.960364 AACTGTGCATAGGCCAACGG 60.960 55.000 15.46 2.57 40.13 4.44
199 200 0.168788 CAACTGTGCATAGGCCAACG 59.831 55.000 15.46 0.00 40.13 4.10
211 212 4.980903 GGCAACCGCGCAACTGTG 62.981 66.667 8.75 0.00 39.92 3.66
212 213 3.818121 TAGGCAACCGCGCAACTGT 62.818 57.895 8.75 0.00 39.92 3.55
213 214 3.047280 TAGGCAACCGCGCAACTG 61.047 61.111 8.75 1.13 39.92 3.16
214 215 3.047877 GTAGGCAACCGCGCAACT 61.048 61.111 8.75 0.00 39.92 3.16
215 216 4.097863 GGTAGGCAACCGCGCAAC 62.098 66.667 8.75 0.00 38.88 4.17
223 224 2.508663 GTCGCTCGGGTAGGCAAC 60.509 66.667 0.00 0.00 0.00 4.17
224 225 2.992689 TGTCGCTCGGGTAGGCAA 60.993 61.111 0.00 0.00 0.00 4.52
225 226 3.755628 GTGTCGCTCGGGTAGGCA 61.756 66.667 0.00 0.00 0.00 4.75
226 227 3.291101 TTGTGTCGCTCGGGTAGGC 62.291 63.158 0.00 0.00 0.00 3.93
227 228 1.153823 CTTGTGTCGCTCGGGTAGG 60.154 63.158 0.00 0.00 0.00 3.18
228 229 0.732880 CACTTGTGTCGCTCGGGTAG 60.733 60.000 0.00 0.00 0.00 3.18
229 230 1.287815 CACTTGTGTCGCTCGGGTA 59.712 57.895 0.00 0.00 0.00 3.69
230 231 2.029073 CACTTGTGTCGCTCGGGT 59.971 61.111 0.00 0.00 0.00 5.28
231 232 1.594293 AACACTTGTGTCGCTCGGG 60.594 57.895 6.88 0.00 0.00 5.14
232 233 1.564622 CAACACTTGTGTCGCTCGG 59.435 57.895 6.88 0.00 0.00 4.63
233 234 1.151777 ACCAACACTTGTGTCGCTCG 61.152 55.000 6.88 0.00 0.00 5.03
234 235 1.860676 TACCAACACTTGTGTCGCTC 58.139 50.000 6.88 0.00 0.00 5.03
235 236 2.413837 GATACCAACACTTGTGTCGCT 58.586 47.619 6.88 0.00 0.00 4.93
236 237 1.126113 CGATACCAACACTTGTGTCGC 59.874 52.381 6.88 0.00 0.00 5.19
237 238 1.126113 GCGATACCAACACTTGTGTCG 59.874 52.381 6.88 6.48 32.81 4.35
238 239 2.413837 AGCGATACCAACACTTGTGTC 58.586 47.619 6.88 0.00 0.00 3.67
239 240 2.543777 AGCGATACCAACACTTGTGT 57.456 45.000 0.00 0.00 0.00 3.72
240 241 2.805671 TCAAGCGATACCAACACTTGTG 59.194 45.455 0.00 0.00 38.99 3.33
241 242 3.120321 TCAAGCGATACCAACACTTGT 57.880 42.857 0.00 0.00 38.99 3.16
242 243 3.667960 GCTTCAAGCGATACCAACACTTG 60.668 47.826 0.00 0.00 39.22 3.16
243 244 2.484264 GCTTCAAGCGATACCAACACTT 59.516 45.455 0.00 0.00 0.00 3.16
244 245 2.076863 GCTTCAAGCGATACCAACACT 58.923 47.619 0.00 0.00 0.00 3.55
245 246 2.527442 GCTTCAAGCGATACCAACAC 57.473 50.000 0.00 0.00 0.00 3.32
256 257 1.128692 GTGACATGTACCGCTTCAAGC 59.871 52.381 0.00 0.00 38.02 4.01
257 258 1.732259 GGTGACATGTACCGCTTCAAG 59.268 52.381 0.00 0.00 0.00 3.02
258 259 1.346395 AGGTGACATGTACCGCTTCAA 59.654 47.619 0.00 0.00 43.06 2.69
259 260 0.973632 AGGTGACATGTACCGCTTCA 59.026 50.000 0.00 0.00 43.06 3.02
260 261 1.641577 GAGGTGACATGTACCGCTTC 58.358 55.000 15.71 7.42 43.06 3.86
261 262 0.249398 GGAGGTGACATGTACCGCTT 59.751 55.000 19.52 5.60 43.06 4.68
262 263 1.614241 GGGAGGTGACATGTACCGCT 61.614 60.000 19.52 6.92 43.06 5.52
263 264 1.153429 GGGAGGTGACATGTACCGC 60.153 63.158 15.08 15.08 43.06 5.68
264 265 0.976073 AGGGGAGGTGACATGTACCG 60.976 60.000 0.00 0.00 43.06 4.02
265 266 0.831307 GAGGGGAGGTGACATGTACC 59.169 60.000 0.00 7.34 38.52 3.34
266 267 1.482593 CTGAGGGGAGGTGACATGTAC 59.517 57.143 0.00 0.00 0.00 2.90
267 268 1.622449 CCTGAGGGGAGGTGACATGTA 60.622 57.143 0.00 0.00 37.23 2.29
268 269 0.911525 CCTGAGGGGAGGTGACATGT 60.912 60.000 0.00 0.00 37.23 3.21
269 270 0.911525 ACCTGAGGGGAGGTGACATG 60.912 60.000 2.38 0.00 45.20 3.21
270 271 1.476165 ACCTGAGGGGAGGTGACAT 59.524 57.895 2.38 0.00 45.20 3.06
271 272 2.951813 ACCTGAGGGGAGGTGACA 59.048 61.111 2.38 0.00 45.20 3.58
276 277 2.750657 GCCATCACCTGAGGGGAGG 61.751 68.421 10.26 9.49 45.47 4.30
277 278 1.997311 TGCCATCACCTGAGGGGAG 60.997 63.158 10.26 0.00 45.47 4.30
278 279 2.124768 TGCCATCACCTGAGGGGA 59.875 61.111 5.61 5.61 45.47 4.81
279 280 2.273449 GTGCCATCACCTGAGGGG 59.727 66.667 2.38 0.00 45.47 4.79
281 282 1.742880 CGTGTGCCATCACCTGAGG 60.743 63.158 0.00 0.00 42.46 3.86
282 283 1.742880 CCGTGTGCCATCACCTGAG 60.743 63.158 0.00 0.00 42.46 3.35
283 284 2.347114 CCGTGTGCCATCACCTGA 59.653 61.111 0.00 0.00 42.46 3.86
284 285 3.434319 GCCGTGTGCCATCACCTG 61.434 66.667 0.00 0.00 42.46 4.00
285 286 3.272364 ATGCCGTGTGCCATCACCT 62.272 57.895 0.00 0.00 42.46 4.00
286 287 2.751436 ATGCCGTGTGCCATCACC 60.751 61.111 0.00 0.00 42.46 4.02
287 288 2.793946 GATGCCGTGTGCCATCAC 59.206 61.111 0.00 0.00 43.40 3.06
288 289 2.819154 CGATGCCGTGTGCCATCA 60.819 61.111 0.00 0.00 40.16 3.07
298 299 0.877649 CTGGAGGATTGACGATGCCG 60.878 60.000 0.00 0.00 42.50 5.69
299 300 0.533755 CCTGGAGGATTGACGATGCC 60.534 60.000 0.00 0.00 37.39 4.40
300 301 0.533755 CCCTGGAGGATTGACGATGC 60.534 60.000 0.00 0.00 38.24 3.91
301 302 0.533755 GCCCTGGAGGATTGACGATG 60.534 60.000 0.00 0.00 38.24 3.84
302 303 0.982852 TGCCCTGGAGGATTGACGAT 60.983 55.000 0.00 0.00 38.24 3.73
303 304 1.198094 TTGCCCTGGAGGATTGACGA 61.198 55.000 0.00 0.00 38.24 4.20
304 305 1.026718 GTTGCCCTGGAGGATTGACG 61.027 60.000 0.00 0.00 38.24 4.35
305 306 0.329596 AGTTGCCCTGGAGGATTGAC 59.670 55.000 0.00 0.00 38.24 3.18
306 307 0.620556 GAGTTGCCCTGGAGGATTGA 59.379 55.000 0.00 0.00 38.24 2.57
307 308 0.329261 TGAGTTGCCCTGGAGGATTG 59.671 55.000 0.00 0.00 38.24 2.67
308 309 1.075601 TTGAGTTGCCCTGGAGGATT 58.924 50.000 0.00 0.00 38.24 3.01
309 310 0.329596 GTTGAGTTGCCCTGGAGGAT 59.670 55.000 0.00 0.00 38.24 3.24
310 311 1.761174 GTTGAGTTGCCCTGGAGGA 59.239 57.895 0.00 0.00 38.24 3.71
311 312 1.303643 GGTTGAGTTGCCCTGGAGG 60.304 63.158 0.00 0.00 39.47 4.30
312 313 1.303643 GGGTTGAGTTGCCCTGGAG 60.304 63.158 0.00 0.00 41.63 3.86
313 314 2.843545 GGGTTGAGTTGCCCTGGA 59.156 61.111 0.00 0.00 41.63 3.86
317 318 0.178990 ACTTCAGGGTTGAGTTGCCC 60.179 55.000 0.00 0.00 45.16 5.36
318 319 1.609072 GAACTTCAGGGTTGAGTTGCC 59.391 52.381 0.00 0.00 34.15 4.52
319 320 2.576615 AGAACTTCAGGGTTGAGTTGC 58.423 47.619 0.00 0.00 34.15 4.17
320 321 3.243201 GCAAGAACTTCAGGGTTGAGTTG 60.243 47.826 0.00 0.00 34.15 3.16
321 322 2.952310 GCAAGAACTTCAGGGTTGAGTT 59.048 45.455 0.00 0.00 34.15 3.01
322 323 2.173569 AGCAAGAACTTCAGGGTTGAGT 59.826 45.455 0.00 0.00 34.15 3.41
323 324 2.551459 CAGCAAGAACTTCAGGGTTGAG 59.449 50.000 0.00 0.00 34.15 3.02
324 325 2.575532 CAGCAAGAACTTCAGGGTTGA 58.424 47.619 0.00 0.00 0.00 3.18
325 326 1.000938 GCAGCAAGAACTTCAGGGTTG 60.001 52.381 0.00 0.00 0.00 3.77
326 327 1.133668 AGCAGCAAGAACTTCAGGGTT 60.134 47.619 0.00 0.00 0.00 4.11
327 328 0.475906 AGCAGCAAGAACTTCAGGGT 59.524 50.000 0.00 0.00 0.00 4.34
328 329 0.879765 CAGCAGCAAGAACTTCAGGG 59.120 55.000 0.00 0.00 0.00 4.45
329 330 0.240411 GCAGCAGCAAGAACTTCAGG 59.760 55.000 0.00 0.00 41.58 3.86
330 331 1.236628 AGCAGCAGCAAGAACTTCAG 58.763 50.000 3.17 0.00 45.49 3.02
331 332 2.146342 GTAGCAGCAGCAAGAACTTCA 58.854 47.619 3.17 0.00 45.49 3.02
332 333 2.146342 TGTAGCAGCAGCAAGAACTTC 58.854 47.619 3.17 0.00 45.49 3.01
333 334 2.260844 TGTAGCAGCAGCAAGAACTT 57.739 45.000 3.17 0.00 45.49 2.66
334 335 2.260844 TTGTAGCAGCAGCAAGAACT 57.739 45.000 3.17 0.00 45.49 3.01
335 336 2.485426 TCATTGTAGCAGCAGCAAGAAC 59.515 45.455 3.17 0.00 45.49 3.01
336 337 2.781923 TCATTGTAGCAGCAGCAAGAA 58.218 42.857 3.17 0.00 45.49 2.52
337 338 2.477845 TCATTGTAGCAGCAGCAAGA 57.522 45.000 3.17 0.00 45.49 3.02
338 339 3.564235 TTTCATTGTAGCAGCAGCAAG 57.436 42.857 3.17 0.00 45.49 4.01
339 340 3.067883 TGTTTTCATTGTAGCAGCAGCAA 59.932 39.130 3.17 0.00 45.49 3.91
340 341 2.622470 TGTTTTCATTGTAGCAGCAGCA 59.378 40.909 3.17 0.00 45.49 4.41
341 342 2.982470 GTGTTTTCATTGTAGCAGCAGC 59.018 45.455 0.00 0.00 42.56 5.25
342 343 4.494350 AGTGTTTTCATTGTAGCAGCAG 57.506 40.909 0.00 0.00 0.00 4.24
343 344 4.083324 GCTAGTGTTTTCATTGTAGCAGCA 60.083 41.667 0.00 0.00 36.91 4.41
344 345 4.406943 GCTAGTGTTTTCATTGTAGCAGC 58.593 43.478 0.00 0.00 36.91 5.25
345 346 4.436050 CGGCTAGTGTTTTCATTGTAGCAG 60.436 45.833 0.00 0.00 37.78 4.24
346 347 3.435327 CGGCTAGTGTTTTCATTGTAGCA 59.565 43.478 0.00 0.00 37.78 3.49
347 348 3.727970 GCGGCTAGTGTTTTCATTGTAGC 60.728 47.826 0.00 0.00 36.55 3.58
348 349 3.435327 TGCGGCTAGTGTTTTCATTGTAG 59.565 43.478 0.00 0.00 0.00 2.74
349 350 3.403968 TGCGGCTAGTGTTTTCATTGTA 58.596 40.909 0.00 0.00 0.00 2.41
350 351 2.226330 TGCGGCTAGTGTTTTCATTGT 58.774 42.857 0.00 0.00 0.00 2.71
351 352 2.987413 TGCGGCTAGTGTTTTCATTG 57.013 45.000 0.00 0.00 0.00 2.82
352 353 3.255642 ACAATGCGGCTAGTGTTTTCATT 59.744 39.130 0.00 0.00 0.00 2.57
353 354 2.819608 ACAATGCGGCTAGTGTTTTCAT 59.180 40.909 0.00 0.00 0.00 2.57
354 355 2.226330 ACAATGCGGCTAGTGTTTTCA 58.774 42.857 0.00 0.00 0.00 2.69
355 356 2.989422 ACAATGCGGCTAGTGTTTTC 57.011 45.000 0.00 0.00 0.00 2.29
356 357 3.380142 CAAACAATGCGGCTAGTGTTTT 58.620 40.909 20.08 9.52 43.70 2.43
357 358 2.288152 CCAAACAATGCGGCTAGTGTTT 60.288 45.455 18.23 18.23 46.08 2.83
358 359 1.269448 CCAAACAATGCGGCTAGTGTT 59.731 47.619 10.76 10.76 40.18 3.32
359 360 0.881118 CCAAACAATGCGGCTAGTGT 59.119 50.000 0.00 0.54 0.00 3.55
360 361 0.171007 CCCAAACAATGCGGCTAGTG 59.829 55.000 0.00 0.00 0.00 2.74
361 362 0.965363 CCCCAAACAATGCGGCTAGT 60.965 55.000 0.00 0.00 0.00 2.57
362 363 0.679640 TCCCCAAACAATGCGGCTAG 60.680 55.000 0.00 0.00 0.00 3.42
363 364 0.251386 TTCCCCAAACAATGCGGCTA 60.251 50.000 0.00 0.00 0.00 3.93
364 365 0.904394 ATTCCCCAAACAATGCGGCT 60.904 50.000 0.00 0.00 0.00 5.52
365 366 0.820871 TATTCCCCAAACAATGCGGC 59.179 50.000 0.00 0.00 0.00 6.53
366 367 2.374184 TCTATTCCCCAAACAATGCGG 58.626 47.619 0.00 0.00 0.00 5.69
367 368 3.694072 TCTTCTATTCCCCAAACAATGCG 59.306 43.478 0.00 0.00 0.00 4.73
368 369 5.659440 TTCTTCTATTCCCCAAACAATGC 57.341 39.130 0.00 0.00 0.00 3.56
369 370 7.043565 CCATTTCTTCTATTCCCCAAACAATG 58.956 38.462 0.00 0.00 0.00 2.82
370 371 6.352137 GCCATTTCTTCTATTCCCCAAACAAT 60.352 38.462 0.00 0.00 0.00 2.71
371 372 5.046663 GCCATTTCTTCTATTCCCCAAACAA 60.047 40.000 0.00 0.00 0.00 2.83
372 373 4.466015 GCCATTTCTTCTATTCCCCAAACA 59.534 41.667 0.00 0.00 0.00 2.83
373 374 4.466015 TGCCATTTCTTCTATTCCCCAAAC 59.534 41.667 0.00 0.00 0.00 2.93
374 375 4.682563 TGCCATTTCTTCTATTCCCCAAA 58.317 39.130 0.00 0.00 0.00 3.28
375 376 4.329638 TGCCATTTCTTCTATTCCCCAA 57.670 40.909 0.00 0.00 0.00 4.12
376 377 4.168675 AGATGCCATTTCTTCTATTCCCCA 59.831 41.667 0.00 0.00 0.00 4.96
377 378 4.734266 AGATGCCATTTCTTCTATTCCCC 58.266 43.478 0.00 0.00 0.00 4.81
378 379 6.324561 GAAGATGCCATTTCTTCTATTCCC 57.675 41.667 6.25 0.00 43.68 3.97
385 386 5.397142 AACCAAGAAGATGCCATTTCTTC 57.603 39.130 10.12 6.08 46.15 2.87
386 387 6.916360 TTAACCAAGAAGATGCCATTTCTT 57.084 33.333 8.24 8.24 42.67 2.52
387 388 6.916360 TTTAACCAAGAAGATGCCATTTCT 57.084 33.333 0.00 0.00 35.25 2.52
388 389 7.118245 CCTTTTTAACCAAGAAGATGCCATTTC 59.882 37.037 0.00 0.00 29.39 2.17
389 390 6.936335 CCTTTTTAACCAAGAAGATGCCATTT 59.064 34.615 0.00 0.00 29.39 2.32
390 391 6.043127 ACCTTTTTAACCAAGAAGATGCCATT 59.957 34.615 0.00 0.00 29.39 3.16
391 392 5.543790 ACCTTTTTAACCAAGAAGATGCCAT 59.456 36.000 0.00 0.00 29.39 4.40
392 393 4.898861 ACCTTTTTAACCAAGAAGATGCCA 59.101 37.500 0.00 0.00 29.39 4.92
393 394 5.468540 ACCTTTTTAACCAAGAAGATGCC 57.531 39.130 0.00 0.00 29.39 4.40
394 395 6.512297 TGAACCTTTTTAACCAAGAAGATGC 58.488 36.000 0.00 0.00 29.39 3.91
395 396 9.546428 AAATGAACCTTTTTAACCAAGAAGATG 57.454 29.630 0.00 0.00 29.39 2.90
397 398 9.952030 AAAAATGAACCTTTTTAACCAAGAAGA 57.048 25.926 0.00 0.00 36.74 2.87
421 422 6.647334 ATCACACATGTCACATGGTAAAAA 57.353 33.333 21.95 2.85 0.00 1.94
422 423 7.574779 GCTTATCACACATGTCACATGGTAAAA 60.575 37.037 21.95 7.39 0.00 1.52
423 424 6.128035 GCTTATCACACATGTCACATGGTAAA 60.128 38.462 21.95 5.29 0.00 2.01
424 425 5.353956 GCTTATCACACATGTCACATGGTAA 59.646 40.000 21.95 10.86 0.00 2.85
425 426 4.875536 GCTTATCACACATGTCACATGGTA 59.124 41.667 21.95 4.57 0.00 3.25
426 427 3.691118 GCTTATCACACATGTCACATGGT 59.309 43.478 21.95 13.44 0.00 3.55
427 428 3.690628 TGCTTATCACACATGTCACATGG 59.309 43.478 21.95 12.82 0.00 3.66
428 429 4.950434 TGCTTATCACACATGTCACATG 57.050 40.909 16.68 16.68 0.00 3.21
429 430 5.066893 GGATTGCTTATCACACATGTCACAT 59.933 40.000 0.00 0.00 34.77 3.21
430 431 4.395854 GGATTGCTTATCACACATGTCACA 59.604 41.667 0.00 0.00 34.77 3.58
431 432 4.494690 CGGATTGCTTATCACACATGTCAC 60.495 45.833 0.00 0.00 34.77 3.67
432 433 3.622612 CGGATTGCTTATCACACATGTCA 59.377 43.478 0.00 0.00 34.77 3.58
433 434 3.871006 TCGGATTGCTTATCACACATGTC 59.129 43.478 0.00 0.00 34.77 3.06
434 435 3.872696 TCGGATTGCTTATCACACATGT 58.127 40.909 0.00 0.00 34.77 3.21
435 436 4.333649 AGTTCGGATTGCTTATCACACATG 59.666 41.667 0.00 0.00 34.77 3.21
436 437 4.517285 AGTTCGGATTGCTTATCACACAT 58.483 39.130 2.57 0.00 34.77 3.21
437 438 3.937814 AGTTCGGATTGCTTATCACACA 58.062 40.909 2.57 0.00 34.77 3.72
438 439 5.109903 ACTAGTTCGGATTGCTTATCACAC 58.890 41.667 0.00 0.00 34.77 3.82
439 440 5.339008 ACTAGTTCGGATTGCTTATCACA 57.661 39.130 0.00 0.00 34.77 3.58
440 441 4.745620 GGACTAGTTCGGATTGCTTATCAC 59.254 45.833 0.00 0.00 34.77 3.06
441 442 4.404394 TGGACTAGTTCGGATTGCTTATCA 59.596 41.667 0.00 0.00 34.77 2.15
442 443 4.945246 TGGACTAGTTCGGATTGCTTATC 58.055 43.478 0.00 0.00 0.00 1.75
443 444 5.511545 GGATGGACTAGTTCGGATTGCTTAT 60.512 44.000 0.00 0.00 0.00 1.73
444 445 4.202223 GGATGGACTAGTTCGGATTGCTTA 60.202 45.833 0.00 0.00 0.00 3.09
445 446 3.432326 GGATGGACTAGTTCGGATTGCTT 60.432 47.826 0.00 0.00 0.00 3.91
446 447 2.103263 GGATGGACTAGTTCGGATTGCT 59.897 50.000 0.00 0.00 0.00 3.91
447 448 2.484889 GGATGGACTAGTTCGGATTGC 58.515 52.381 0.00 0.00 0.00 3.56
448 449 2.100916 ACGGATGGACTAGTTCGGATTG 59.899 50.000 0.00 0.00 0.00 2.67
449 450 2.361438 GACGGATGGACTAGTTCGGATT 59.639 50.000 0.00 0.00 0.00 3.01
450 451 1.955080 GACGGATGGACTAGTTCGGAT 59.045 52.381 0.00 0.00 0.00 4.18
451 452 1.386533 GACGGATGGACTAGTTCGGA 58.613 55.000 0.00 0.00 0.00 4.55
452 453 0.384669 GGACGGATGGACTAGTTCGG 59.615 60.000 0.00 0.00 0.00 4.30
453 454 0.384669 GGGACGGATGGACTAGTTCG 59.615 60.000 0.00 0.00 0.00 3.95
454 455 1.481871 TGGGACGGATGGACTAGTTC 58.518 55.000 0.00 0.00 0.00 3.01
455 456 1.946984 TTGGGACGGATGGACTAGTT 58.053 50.000 0.00 0.00 0.00 2.24
456 457 1.946984 TTTGGGACGGATGGACTAGT 58.053 50.000 0.00 0.00 0.00 2.57
457 458 3.560636 AATTTGGGACGGATGGACTAG 57.439 47.619 0.00 0.00 0.00 2.57
458 459 3.521937 AGAAATTTGGGACGGATGGACTA 59.478 43.478 0.00 0.00 0.00 2.59
459 460 2.308866 AGAAATTTGGGACGGATGGACT 59.691 45.455 0.00 0.00 0.00 3.85
460 461 2.723273 AGAAATTTGGGACGGATGGAC 58.277 47.619 0.00 0.00 0.00 4.02
461 462 3.088532 CAAGAAATTTGGGACGGATGGA 58.911 45.455 0.00 0.00 0.00 3.41
462 463 2.825532 ACAAGAAATTTGGGACGGATGG 59.174 45.455 0.00 0.00 0.00 3.51
463 464 3.758554 AGACAAGAAATTTGGGACGGATG 59.241 43.478 0.00 0.00 0.00 3.51
464 465 4.034285 AGACAAGAAATTTGGGACGGAT 57.966 40.909 0.00 0.00 0.00 4.18
465 466 3.502123 AGACAAGAAATTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
466 467 5.699097 TTAAGACAAGAAATTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
467 468 8.587952 AAATTTAAGACAAGAAATTTGGGACG 57.412 30.769 0.00 0.00 41.43 4.79
489 490 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
490 491 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
491 492 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
492 493 8.002984 TGACTTGATACATCCGTATTTAGACA 57.997 34.615 0.00 0.00 38.48 3.41
493 494 8.916654 CATGACTTGATACATCCGTATTTAGAC 58.083 37.037 0.00 0.00 38.48 2.59
494 495 8.638873 ACATGACTTGATACATCCGTATTTAGA 58.361 33.333 0.00 0.00 38.48 2.10
495 496 8.818141 ACATGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
496 497 9.607988 AAACATGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
497 498 8.506168 AAACATGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
498 499 8.506168 AAAACATGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
499 500 9.261180 CTAAAACATGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
500 501 8.255206 ACTAAAACATGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 0.00 4.02
501 502 7.103641 ACTAAAACATGACTTGATACATCCGT 58.896 34.615 0.00 0.00 0.00 4.69
502 503 7.539712 ACTAAAACATGACTTGATACATCCG 57.460 36.000 0.00 0.00 0.00 4.18
546 547 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
547 548 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
548 549 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
549 550 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
550 551 8.417884 TCGTCCCAAAATTCTTGTCTTAAATTT 58.582 29.630 0.00 0.00 34.86 1.82
551 552 7.947282 TCGTCCCAAAATTCTTGTCTTAAATT 58.053 30.769 0.00 0.00 0.00 1.82
552 553 7.519032 TCGTCCCAAAATTCTTGTCTTAAAT 57.481 32.000 0.00 0.00 0.00 1.40
553 554 6.945938 TCGTCCCAAAATTCTTGTCTTAAA 57.054 33.333 0.00 0.00 0.00 1.52
554 555 6.016610 CCTTCGTCCCAAAATTCTTGTCTTAA 60.017 38.462 0.00 0.00 0.00 1.85
555 556 5.472137 CCTTCGTCCCAAAATTCTTGTCTTA 59.528 40.000 0.00 0.00 0.00 2.10
556 557 4.278419 CCTTCGTCCCAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
557 558 3.821033 CCTTCGTCCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
558 559 3.057526 CCCTTCGTCCCAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
559 560 2.890945 CCCTTCGTCCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
560 561 3.153919 TCCCTTCGTCCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
561 562 3.181433 ACTCCCTTCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
562 563 2.375509 ACTCCCTTCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
563 564 2.791655 ACTCCCTTCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
564 565 2.971901 ACTCCCTTCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
565 566 4.586306 AATACTCCCTTCGTCCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
566 567 5.502089 TTAATACTCCCTTCGTCCCAAAA 57.498 39.130 0.00 0.00 0.00 2.44
567 568 5.502089 TTTAATACTCCCTTCGTCCCAAA 57.498 39.130 0.00 0.00 0.00 3.28
568 569 5.502089 TTTTAATACTCCCTTCGTCCCAA 57.498 39.130 0.00 0.00 0.00 4.12
569 570 5.502089 TTTTTAATACTCCCTTCGTCCCA 57.498 39.130 0.00 0.00 0.00 4.37
593 594 9.378551 GTGTTTCCTTCTTTTAAAAATGAACCT 57.621 29.630 1.66 0.00 31.40 3.50
604 605 5.506649 GGCGTTGATGTGTTTCCTTCTTTTA 60.507 40.000 0.00 0.00 0.00 1.52
605 606 4.359706 GCGTTGATGTGTTTCCTTCTTTT 58.640 39.130 0.00 0.00 0.00 2.27
609 610 1.068541 GGGCGTTGATGTGTTTCCTTC 60.069 52.381 0.00 0.00 0.00 3.46
638 639 7.820648 TCTTCTCCTTAGCAATTTTAAGCTTG 58.179 34.615 9.86 0.00 42.05 4.01
727 737 1.595093 CCTGATTGGTTGCGGTTCCC 61.595 60.000 0.00 0.00 0.00 3.97
729 739 1.883021 CCCTGATTGGTTGCGGTTC 59.117 57.895 0.00 0.00 0.00 3.62
807 818 1.079127 GGAGTGGACGGTGGTGATG 60.079 63.158 0.00 0.00 0.00 3.07
811 822 1.608627 GGTAGGAGTGGACGGTGGT 60.609 63.158 0.00 0.00 0.00 4.16
824 835 1.339631 TGGAGCGTTGGATTTGGTAGG 60.340 52.381 0.00 0.00 0.00 3.18
861 872 0.038618 GCGGGTGGGTGATTGTTTTC 60.039 55.000 0.00 0.00 0.00 2.29
915 926 1.583495 GGATTTAATAGGCGGCGGGC 61.583 60.000 9.78 10.04 42.51 6.13
940 952 1.758906 GAGGAGAAGGACGGGGGAG 60.759 68.421 0.00 0.00 0.00 4.30
941 953 2.363361 GAGGAGAAGGACGGGGGA 59.637 66.667 0.00 0.00 0.00 4.81
942 954 2.038975 TGAGGAGAAGGACGGGGG 59.961 66.667 0.00 0.00 0.00 5.40
950 962 2.191400 TGGGATTGGAGTGAGGAGAAG 58.809 52.381 0.00 0.00 0.00 2.85
1014 1026 3.775654 GGACGAGAGGCTGGGGTG 61.776 72.222 0.00 0.00 40.87 4.61
1219 1231 1.524849 GAAGGGGAGCTTGCGGATC 60.525 63.158 0.00 0.00 0.00 3.36
1490 3631 0.393132 TTTCCACCACGCAACACAGA 60.393 50.000 0.00 0.00 0.00 3.41
1567 3711 4.631131 TGGTTACATCAGACACAGAACAG 58.369 43.478 0.00 0.00 0.00 3.16
1624 3772 3.341823 ACACAGCACAGAATTCAGATCC 58.658 45.455 8.44 0.00 0.00 3.36
1635 3783 4.919206 TGACAAACAAATACACAGCACAG 58.081 39.130 0.00 0.00 0.00 3.66
1642 3790 6.959361 AGATCACACTGACAAACAAATACAC 58.041 36.000 0.00 0.00 0.00 2.90
1646 3794 5.284079 GCAAGATCACACTGACAAACAAAT 58.716 37.500 0.00 0.00 0.00 2.32
1657 3811 0.773644 AGTTGGGGCAAGATCACACT 59.226 50.000 0.00 0.00 0.00 3.55
1658 3812 1.620822 AAGTTGGGGCAAGATCACAC 58.379 50.000 0.00 0.00 0.00 3.82
1659 3813 1.962807 CAAAGTTGGGGCAAGATCACA 59.037 47.619 0.00 0.00 0.00 3.58
1675 3829 5.334879 CCAGTAATCCAACTTCCGTTCAAAG 60.335 44.000 0.00 0.00 0.00 2.77
1680 3834 3.782656 ACCAGTAATCCAACTTCCGTT 57.217 42.857 0.00 0.00 0.00 4.44
1682 3836 3.118738 AGCTACCAGTAATCCAACTTCCG 60.119 47.826 0.00 0.00 0.00 4.30
1699 3854 3.284323 TCAGTTGACACTCGAAGCTAC 57.716 47.619 0.00 0.00 0.00 3.58
1700 3855 4.299155 CTTTCAGTTGACACTCGAAGCTA 58.701 43.478 0.00 0.00 0.00 3.32
1702 3857 2.348966 GCTTTCAGTTGACACTCGAAGC 60.349 50.000 0.00 0.00 39.21 3.86
1703 3858 2.221981 GGCTTTCAGTTGACACTCGAAG 59.778 50.000 0.00 0.00 0.00 3.79
1706 3861 0.868406 GGGCTTTCAGTTGACACTCG 59.132 55.000 0.00 0.00 0.00 4.18
1709 3864 1.398692 TTGGGGCTTTCAGTTGACAC 58.601 50.000 0.00 0.00 0.00 3.67
1731 3886 3.316071 CACAAAGGTGGCATGCAATTA 57.684 42.857 21.36 0.00 41.45 1.40
1754 3909 5.059161 TGGTTTGTCTGTGAGATTCAGAAG 58.941 41.667 0.00 0.00 42.42 2.85
1765 3920 5.403166 CAGTAATGCAATTGGTTTGTCTGTG 59.597 40.000 7.72 0.00 36.99 3.66
1767 3922 4.925054 CCAGTAATGCAATTGGTTTGTCTG 59.075 41.667 7.72 0.00 36.99 3.51
1768 3923 4.588528 ACCAGTAATGCAATTGGTTTGTCT 59.411 37.500 7.72 0.00 40.94 3.41
1769 3924 4.881920 ACCAGTAATGCAATTGGTTTGTC 58.118 39.130 7.72 0.00 40.94 3.18
1770 3925 4.953940 ACCAGTAATGCAATTGGTTTGT 57.046 36.364 7.72 0.00 40.94 2.83
1772 3927 7.330700 CGAAAATACCAGTAATGCAATTGGTTT 59.669 33.333 10.47 1.21 40.94 3.27
1773 3928 6.811170 CGAAAATACCAGTAATGCAATTGGTT 59.189 34.615 10.47 0.00 40.94 3.67
1774 3929 6.151985 TCGAAAATACCAGTAATGCAATTGGT 59.848 34.615 10.12 10.12 45.42 3.67
1775 3930 6.559810 TCGAAAATACCAGTAATGCAATTGG 58.440 36.000 7.72 0.00 36.99 3.16
1776 3931 8.533965 CAATCGAAAATACCAGTAATGCAATTG 58.466 33.333 0.00 0.00 36.99 2.32
1777 3932 8.250332 ACAATCGAAAATACCAGTAATGCAATT 58.750 29.630 0.00 0.00 41.28 2.32
1778 3933 7.771183 ACAATCGAAAATACCAGTAATGCAAT 58.229 30.769 0.00 0.00 0.00 3.56
1779 3934 7.094592 TGACAATCGAAAATACCAGTAATGCAA 60.095 33.333 0.00 0.00 0.00 4.08
1780 3935 6.372937 TGACAATCGAAAATACCAGTAATGCA 59.627 34.615 0.00 0.00 0.00 3.96
1781 3936 6.781138 TGACAATCGAAAATACCAGTAATGC 58.219 36.000 0.00 0.00 0.00 3.56
1782 3937 9.787532 AATTGACAATCGAAAATACCAGTAATG 57.212 29.630 0.05 0.00 0.00 1.90
1783 3938 9.787532 CAATTGACAATCGAAAATACCAGTAAT 57.212 29.630 0.00 0.00 0.00 1.89
1784 3939 9.004717 TCAATTGACAATCGAAAATACCAGTAA 57.995 29.630 3.38 0.00 0.00 2.24
1785 3940 8.554835 TCAATTGACAATCGAAAATACCAGTA 57.445 30.769 3.38 0.00 0.00 2.74
1786 3941 7.447374 TCAATTGACAATCGAAAATACCAGT 57.553 32.000 3.38 0.00 0.00 4.00
1787 3942 8.741101 TTTCAATTGACAATCGAAAATACCAG 57.259 30.769 11.07 0.00 0.00 4.00
1792 3947 9.912634 ACACTATTTCAATTGACAATCGAAAAT 57.087 25.926 16.15 15.24 0.00 1.82
1793 3948 9.179552 CACACTATTTCAATTGACAATCGAAAA 57.820 29.630 16.15 10.38 0.00 2.29
1794 3949 8.349245 ACACACTATTTCAATTGACAATCGAAA 58.651 29.630 14.89 14.89 0.00 3.46
1795 3950 7.870826 ACACACTATTTCAATTGACAATCGAA 58.129 30.769 7.89 0.00 0.00 3.71
1796 3951 7.433708 ACACACTATTTCAATTGACAATCGA 57.566 32.000 7.89 0.00 0.00 3.59
1797 3952 6.462636 CGACACACTATTTCAATTGACAATCG 59.537 38.462 7.89 9.67 0.00 3.34
1798 3953 6.742718 CCGACACACTATTTCAATTGACAATC 59.257 38.462 7.89 0.00 0.00 2.67
1799 3954 6.206634 ACCGACACACTATTTCAATTGACAAT 59.793 34.615 7.89 12.95 0.00 2.71
1800 3955 5.529430 ACCGACACACTATTTCAATTGACAA 59.471 36.000 7.89 6.58 0.00 3.18
1801 3956 5.060506 ACCGACACACTATTTCAATTGACA 58.939 37.500 7.89 1.31 0.00 3.58
1802 3957 5.607119 ACCGACACACTATTTCAATTGAC 57.393 39.130 7.89 0.00 0.00 3.18
1803 3958 7.915293 AATACCGACACACTATTTCAATTGA 57.085 32.000 3.38 3.38 0.00 2.57
1806 3961 9.052759 GGAATAATACCGACACACTATTTCAAT 57.947 33.333 0.00 0.00 0.00 2.57
1807 3962 8.262227 AGGAATAATACCGACACACTATTTCAA 58.738 33.333 0.00 0.00 0.00 2.69
1808 3963 7.709182 CAGGAATAATACCGACACACTATTTCA 59.291 37.037 0.00 0.00 0.00 2.69
1809 3964 7.307219 GCAGGAATAATACCGACACACTATTTC 60.307 40.741 0.00 0.00 0.00 2.17
1810 3965 6.482308 GCAGGAATAATACCGACACACTATTT 59.518 38.462 0.00 0.00 0.00 1.40
1811 3966 5.989777 GCAGGAATAATACCGACACACTATT 59.010 40.000 0.00 0.00 0.00 1.73
1812 3967 5.510861 GGCAGGAATAATACCGACACACTAT 60.511 44.000 0.00 0.00 0.00 2.12
1813 3968 4.202182 GGCAGGAATAATACCGACACACTA 60.202 45.833 0.00 0.00 0.00 2.74
1814 3969 3.431766 GGCAGGAATAATACCGACACACT 60.432 47.826 0.00 0.00 0.00 3.55
1815 3970 2.870411 GGCAGGAATAATACCGACACAC 59.130 50.000 0.00 0.00 0.00 3.82
1816 3971 2.769663 AGGCAGGAATAATACCGACACA 59.230 45.455 0.00 0.00 0.00 3.72
1817 3972 3.131396 CAGGCAGGAATAATACCGACAC 58.869 50.000 0.00 0.00 0.00 3.67
1818 3973 2.769663 ACAGGCAGGAATAATACCGACA 59.230 45.455 0.00 0.00 0.00 4.35
1819 3974 3.470645 ACAGGCAGGAATAATACCGAC 57.529 47.619 0.00 0.00 0.00 4.79
1820 3975 4.196193 CAAACAGGCAGGAATAATACCGA 58.804 43.478 0.00 0.00 0.00 4.69
1821 3976 3.945285 ACAAACAGGCAGGAATAATACCG 59.055 43.478 0.00 0.00 0.00 4.02
1822 3977 5.417580 TCAACAAACAGGCAGGAATAATACC 59.582 40.000 0.00 0.00 0.00 2.73
1823 3978 6.509418 TCAACAAACAGGCAGGAATAATAC 57.491 37.500 0.00 0.00 0.00 1.89
1824 3979 8.815565 TTATCAACAAACAGGCAGGAATAATA 57.184 30.769 0.00 0.00 0.00 0.98
1825 3980 7.716799 TTATCAACAAACAGGCAGGAATAAT 57.283 32.000 0.00 0.00 0.00 1.28
1829 3984 8.815565 TTATATTATCAACAAACAGGCAGGAA 57.184 30.769 0.00 0.00 0.00 3.36
1835 3990 8.999431 AGCCGTATTATATTATCAACAAACAGG 58.001 33.333 0.00 0.00 0.00 4.00
1853 4008 6.759827 ACAACGAGAAATGTATTAGCCGTATT 59.240 34.615 0.00 0.00 0.00 1.89
1854 4009 6.278363 ACAACGAGAAATGTATTAGCCGTAT 58.722 36.000 0.00 0.00 0.00 3.06
1855 4010 5.653507 ACAACGAGAAATGTATTAGCCGTA 58.346 37.500 0.00 0.00 0.00 4.02
1856 4011 4.501071 ACAACGAGAAATGTATTAGCCGT 58.499 39.130 0.00 0.00 0.00 5.68
1857 4012 6.764877 ATACAACGAGAAATGTATTAGCCG 57.235 37.500 0.00 0.00 39.14 5.52
1858 4013 8.827677 AGAAATACAACGAGAAATGTATTAGCC 58.172 33.333 10.53 5.20 46.59 3.93
1864 4019 9.917129 TCTGTAAGAAATACAACGAGAAATGTA 57.083 29.630 0.00 0.00 42.31 2.29
1902 4123 0.520404 CAGGACAGCAGCAACACATC 59.480 55.000 0.00 0.00 0.00 3.06
1905 4126 0.308993 GTTCAGGACAGCAGCAACAC 59.691 55.000 0.00 0.00 0.00 3.32
1906 4127 0.819259 GGTTCAGGACAGCAGCAACA 60.819 55.000 0.00 0.00 0.00 3.33
1907 4128 0.819259 TGGTTCAGGACAGCAGCAAC 60.819 55.000 0.00 0.00 0.00 4.17
1908 4129 0.111061 ATGGTTCAGGACAGCAGCAA 59.889 50.000 0.00 0.00 0.00 3.91
1909 4130 0.607217 CATGGTTCAGGACAGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1910 4131 0.321919 TCATGGTTCAGGACAGCAGC 60.322 55.000 0.00 0.00 0.00 5.25
1911 4132 2.414994 ATCATGGTTCAGGACAGCAG 57.585 50.000 0.00 0.00 0.00 4.24
1912 4133 4.508551 AATATCATGGTTCAGGACAGCA 57.491 40.909 0.00 0.00 0.00 4.41
1913 4134 5.591877 AGAAAATATCATGGTTCAGGACAGC 59.408 40.000 0.00 0.00 0.00 4.40
1914 4135 8.915057 ATAGAAAATATCATGGTTCAGGACAG 57.085 34.615 0.00 0.00 0.00 3.51
1915 4136 8.717717 AGATAGAAAATATCATGGTTCAGGACA 58.282 33.333 0.00 0.00 0.00 4.02
1937 4158 9.391006 GGTCATTTTGAACAGGTGTTATAGATA 57.609 33.333 0.00 0.00 38.56 1.98
1938 4159 8.109634 AGGTCATTTTGAACAGGTGTTATAGAT 58.890 33.333 0.00 0.00 36.30 1.98
1939 4160 7.390440 CAGGTCATTTTGAACAGGTGTTATAGA 59.610 37.037 0.00 0.00 36.30 1.98
1940 4161 7.390440 TCAGGTCATTTTGAACAGGTGTTATAG 59.610 37.037 0.00 0.00 36.30 1.31
1941 4162 7.227873 TCAGGTCATTTTGAACAGGTGTTATA 58.772 34.615 0.00 0.00 36.30 0.98
1942 4163 6.068010 TCAGGTCATTTTGAACAGGTGTTAT 58.932 36.000 0.00 0.00 36.30 1.89
1971 4192 9.971922 GGCAAAAGCATATTCAGAGTAAATATT 57.028 29.630 0.00 0.00 29.00 1.28
1972 4193 9.135189 TGGCAAAAGCATATTCAGAGTAAATAT 57.865 29.630 0.00 0.00 31.08 1.28
1973 4194 8.518430 TGGCAAAAGCATATTCAGAGTAAATA 57.482 30.769 0.00 0.00 0.00 1.40
1974 4195 7.408756 TGGCAAAAGCATATTCAGAGTAAAT 57.591 32.000 0.00 0.00 0.00 1.40
1977 4198 5.532406 GGATGGCAAAAGCATATTCAGAGTA 59.468 40.000 0.00 0.00 0.00 2.59
2019 4485 8.379457 ACAGTACTTTTATTTGTTCAGGAGAC 57.621 34.615 0.00 0.00 0.00 3.36
2041 4507 7.011482 CGGGAAAAAGGAAGTTATGATCTACAG 59.989 40.741 0.00 0.00 0.00 2.74
2042 4508 6.821665 CGGGAAAAAGGAAGTTATGATCTACA 59.178 38.462 0.00 0.00 0.00 2.74
2043 4509 7.046033 TCGGGAAAAAGGAAGTTATGATCTAC 58.954 38.462 0.00 0.00 0.00 2.59
2044 4510 7.190335 TCGGGAAAAAGGAAGTTATGATCTA 57.810 36.000 0.00 0.00 0.00 1.98
2045 4511 6.062258 TCGGGAAAAAGGAAGTTATGATCT 57.938 37.500 0.00 0.00 0.00 2.75
2118 4584 5.314529 CAGGCTTGAGGATTATCATCACAT 58.685 41.667 9.17 0.00 36.87 3.21
2201 4668 0.177604 CCCATCAGACACCTCAGAGC 59.822 60.000 0.00 0.00 0.00 4.09
2220 4687 1.063806 CAGTGACGAGTAGCAGCAAC 58.936 55.000 0.00 0.00 0.00 4.17
2250 4717 1.203523 AGTCCTGCTCAGAATGACGAC 59.796 52.381 0.00 0.00 42.56 4.34
2273 4740 5.441718 TCTTTCATGGAGCCATTACTCTT 57.558 39.130 0.00 0.00 36.87 2.85
2274 4741 5.643421 ATCTTTCATGGAGCCATTACTCT 57.357 39.130 0.00 0.00 36.87 3.24
2287 4754 9.388506 ACCTGATTCAACTTACTATCTTTCATG 57.611 33.333 0.00 0.00 0.00 3.07
2296 4767 6.923508 CGCATGATACCTGATTCAACTTACTA 59.076 38.462 0.00 0.00 0.00 1.82
2315 4786 3.625764 GCTATTAGTTTTCCCACGCATGA 59.374 43.478 0.00 0.00 0.00 3.07
2350 4827 2.818921 TGGATGGATTTTTCCAGTGGG 58.181 47.619 9.92 0.00 43.86 4.61
2414 4895 3.930229 TGTGTATTTAGGCTTGTACTGCG 59.070 43.478 0.00 0.00 0.00 5.18
2478 4959 3.745975 TGCCTAGAAAACAAGATGACACG 59.254 43.478 0.00 0.00 0.00 4.49
2486 4967 6.992063 ATACATGACTGCCTAGAAAACAAG 57.008 37.500 0.00 0.00 0.00 3.16
2532 5013 4.846779 TTTGACTGCCTGGATAACAAAC 57.153 40.909 0.00 0.00 0.00 2.93
2557 5038 2.991250 ACAAGTGTGCAGACTGAACTT 58.009 42.857 18.37 12.59 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.