Multiple sequence alignment - TraesCS1D01G274100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G274100 chr1D 100.000 3514 0 0 1 3514 368676616 368673103 0.000000e+00 6490.0
1 TraesCS1D01G274100 chr1D 85.830 494 27 17 3058 3514 28581783 28582270 5.270000e-133 484.0
2 TraesCS1D01G274100 chr1D 85.386 479 53 6 2124 2590 488607542 488608015 6.820000e-132 481.0
3 TraesCS1D01G274100 chr1D 85.885 418 48 7 185 597 28555272 28554861 5.390000e-118 435.0
4 TraesCS1D01G274100 chr1D 85.714 371 32 10 931 1283 489301726 489301359 4.280000e-99 372.0
5 TraesCS1D01G274100 chr1D 79.550 489 53 18 818 1283 489755854 489756318 4.410000e-79 305.0
6 TraesCS1D01G274100 chr1D 88.446 251 26 3 923 1172 488589468 488589716 2.050000e-77 300.0
7 TraesCS1D01G274100 chr1D 84.326 319 36 10 2280 2590 489782662 489782974 2.050000e-77 300.0
8 TraesCS1D01G274100 chr1D 78.455 246 42 6 2280 2520 488612009 488612248 2.190000e-32 150.0
9 TraesCS1D01G274100 chr1D 75.159 314 48 18 2295 2589 488513218 488512916 1.710000e-23 121.0
10 TraesCS1D01G274100 chr1D 87.129 101 11 2 2706 2805 489783107 489783206 2.870000e-21 113.0
11 TraesCS1D01G274100 chr1D 83.333 120 5 4 3049 3153 28586950 28586831 2.890000e-16 97.1
12 TraesCS1D01G274100 chr1D 89.474 76 8 0 635 710 488544173 488544098 2.890000e-16 97.1
13 TraesCS1D01G274100 chr1D 86.842 76 8 2 635 709 489302004 489301930 2.250000e-12 84.2
14 TraesCS1D01G274100 chr1D 88.571 70 5 1 1848 1914 460303366 460303297 8.080000e-12 82.4
15 TraesCS1D01G274100 chr1D 86.885 61 5 3 1927 1984 407673101 407673041 8.140000e-07 65.8
16 TraesCS1D01G274100 chr1D 86.207 58 5 3 1929 1983 379139915 379139972 3.790000e-05 60.2
17 TraesCS1D01G274100 chr1D 100.000 28 0 0 3 30 368402106 368402133 6.000000e-03 52.8
18 TraesCS1D01G274100 chr1A 94.906 1433 39 13 556 1984 468462627 468461225 0.000000e+00 2211.0
19 TraesCS1D01G274100 chr1A 94.836 1433 40 13 556 1984 468411456 468410054 0.000000e+00 2206.0
20 TraesCS1D01G274100 chr1A 92.751 676 29 8 2856 3514 468408404 468407732 0.000000e+00 959.0
21 TraesCS1D01G274100 chr1A 92.160 676 32 10 2856 3514 468459575 468458904 0.000000e+00 935.0
22 TraesCS1D01G274100 chr1A 97.601 542 10 3 2324 2864 468409614 468409075 0.000000e+00 926.0
23 TraesCS1D01G274100 chr1A 97.232 542 12 3 2324 2864 468460785 468460246 0.000000e+00 915.0
24 TraesCS1D01G274100 chr1A 95.963 322 13 0 1969 2290 468409943 468409622 1.120000e-144 523.0
25 TraesCS1D01G274100 chr1A 95.963 322 13 0 1969 2290 468461114 468460793 1.120000e-144 523.0
26 TraesCS1D01G274100 chr1A 81.818 451 45 22 929 1348 588664111 588664555 9.340000e-91 344.0
27 TraesCS1D01G274100 chr1A 86.920 237 29 2 938 1172 587846020 587846256 7.480000e-67 265.0
28 TraesCS1D01G274100 chr1A 94.578 166 7 2 36 201 468417439 468417276 4.500000e-64 255.0
29 TraesCS1D01G274100 chr1A 94.578 166 7 2 36 201 468477342 468477179 4.500000e-64 255.0
30 TraesCS1D01G274100 chr1A 94.000 50 2 1 667 715 587663666 587663617 1.350000e-09 75.0
31 TraesCS1D01G274100 chr1A 97.619 42 0 1 2766 2806 587673487 587673446 1.750000e-08 71.3
32 TraesCS1D01G274100 chr1A 75.419 179 23 12 1659 1816 588664354 588664532 2.260000e-07 67.6
33 TraesCS1D01G274100 chr5D 89.030 474 31 8 3059 3514 525581434 525580964 5.090000e-158 568.0
34 TraesCS1D01G274100 chr5D 87.775 409 38 9 194 596 434252234 434252636 5.310000e-128 468.0
35 TraesCS1D01G274100 chr5D 85.111 497 28 19 3058 3514 555466098 555466588 1.910000e-127 466.0
36 TraesCS1D01G274100 chr5D 84.909 497 28 21 3058 3514 485761913 485761424 3.200000e-125 459.0
37 TraesCS1D01G274100 chr5D 77.778 261 27 16 1659 1898 526595324 526595574 7.910000e-27 132.0
38 TraesCS1D01G274100 chr5D 84.034 119 3 5 3051 3153 485756746 485756864 2.230000e-17 100.0
39 TraesCS1D01G274100 chr5D 96.296 54 2 0 3056 3109 555471255 555471202 4.830000e-14 89.8
40 TraesCS1D01G274100 chr5D 83.529 85 7 1 1508 1592 41816896 41816819 4.870000e-09 73.1
41 TraesCS1D01G274100 chr5D 100.000 38 0 0 1922 1959 129913229 129913266 1.750000e-08 71.3
42 TraesCS1D01G274100 chr3A 88.632 475 33 8 3057 3514 729864333 729864803 3.060000e-155 558.0
43 TraesCS1D01G274100 chr3A 86.265 415 44 10 188 597 727187694 727187288 4.160000e-119 438.0
44 TraesCS1D01G274100 chr3A 81.188 101 5 6 2280 2379 150997386 150997299 6.290000e-08 69.4
45 TraesCS1D01G274100 chr3A 97.059 34 1 0 1473 1506 150998217 150998184 1.360000e-04 58.4
46 TraesCS1D01G274100 chr2A 85.686 503 29 12 3051 3514 83921525 83922023 1.130000e-134 490.0
47 TraesCS1D01G274100 chr6B 85.657 495 32 17 3057 3514 17945583 17946075 5.270000e-133 484.0
48 TraesCS1D01G274100 chr6B 77.947 263 28 18 1672 1920 125721474 125721228 1.700000e-28 137.0
49 TraesCS1D01G274100 chr6B 81.890 127 7 4 3046 3156 17950722 17950596 3.730000e-15 93.5
50 TraesCS1D01G274100 chr4B 85.714 497 28 13 3058 3514 16697107 16697600 5.270000e-133 484.0
51 TraesCS1D01G274100 chr4B 91.388 209 13 5 3309 3514 16702308 16702102 7.430000e-72 281.0
52 TraesCS1D01G274100 chr6A 85.628 494 31 13 3058 3514 53132665 53132175 1.900000e-132 483.0
53 TraesCS1D01G274100 chr4D 85.312 497 27 20 3058 3514 504098420 504097930 4.110000e-129 472.0
54 TraesCS1D01G274100 chr4D 82.353 85 8 5 1508 1592 307492699 307492622 2.260000e-07 67.6
55 TraesCS1D01G274100 chr4D 100.000 30 0 0 1 30 28087580 28087551 4.900000e-04 56.5
56 TraesCS1D01G274100 chr4D 100.000 30 0 0 1515 1544 465126561 465126590 4.900000e-04 56.5
57 TraesCS1D01G274100 chr7A 86.874 419 44 8 185 596 701199780 701199366 3.200000e-125 459.0
58 TraesCS1D01G274100 chr7A 86.353 425 50 5 184 603 604282545 604282966 1.150000e-124 457.0
59 TraesCS1D01G274100 chr3D 87.374 396 48 2 204 597 299556614 299557009 1.490000e-123 453.0
60 TraesCS1D01G274100 chr3D 83.168 101 3 6 2280 2379 135580495 135580408 2.910000e-11 80.5
61 TraesCS1D01G274100 chr3D 85.246 61 6 3 1927 1984 480844558 480844498 3.790000e-05 60.2
62 TraesCS1D01G274100 chr3D 85.000 60 6 3 1928 1984 23667592 23667533 1.360000e-04 58.4
63 TraesCS1D01G274100 chr7B 88.220 382 37 8 183 561 37103193 37102817 1.920000e-122 449.0
64 TraesCS1D01G274100 chr7B 94.340 53 2 1 1540 1592 641326198 641326249 2.910000e-11 80.5
65 TraesCS1D01G274100 chr7B 100.000 31 0 0 1 31 497601685 497601655 1.360000e-04 58.4
66 TraesCS1D01G274100 chr6D 86.429 420 43 9 187 597 36685709 36686123 6.920000e-122 448.0
67 TraesCS1D01G274100 chrUn 86.265 415 44 10 188 597 277307005 277307411 4.160000e-119 438.0
68 TraesCS1D01G274100 chrUn 80.190 525 57 25 635 1137 205602912 205602413 2.010000e-92 350.0
69 TraesCS1D01G274100 chrUn 88.525 244 11 5 3051 3279 414085773 414085532 2.670000e-71 279.0
70 TraesCS1D01G274100 chrUn 74.065 428 66 36 2295 2686 8748894 8748476 2.200000e-27 134.0
71 TraesCS1D01G274100 chrUn 82.955 88 8 1 1504 1591 111025288 111025368 4.870000e-09 73.1
72 TraesCS1D01G274100 chrUn 95.238 42 1 1 2766 2806 9170274 9170233 8.140000e-07 65.8
73 TraesCS1D01G274100 chrUn 95.238 42 1 1 2766 2806 205599906 205599865 8.140000e-07 65.8
74 TraesCS1D01G274100 chrUn 93.333 45 2 1 2763 2806 377538981 377539025 8.140000e-07 65.8
75 TraesCS1D01G274100 chrUn 100.000 28 0 0 1509 1536 30123197 30123170 6.000000e-03 52.8
76 TraesCS1D01G274100 chr1B 80.190 525 57 25 635 1137 682488140 682487641 2.010000e-92 350.0
77 TraesCS1D01G274100 chr1B 78.853 558 61 29 714 1233 680744591 680744053 1.220000e-84 324.0
78 TraesCS1D01G274100 chr1B 82.675 329 45 7 2270 2590 681067326 681067002 7.430000e-72 281.0
79 TraesCS1D01G274100 chr1B 90.780 141 13 0 2124 2264 681076275 681076135 4.630000e-44 189.0
80 TraesCS1D01G274100 chr1B 74.576 295 50 15 2295 2573 681928829 681929114 4.800000e-19 106.0
81 TraesCS1D01G274100 chr1B 97.826 46 1 0 667 712 681802533 681802578 2.910000e-11 80.5
82 TraesCS1D01G274100 chr1B 95.238 42 1 1 2766 2806 682485128 682485087 8.140000e-07 65.8
83 TraesCS1D01G274100 chr1B 89.796 49 3 2 650 696 682003088 682003136 1.050000e-05 62.1
84 TraesCS1D01G274100 chr1B 86.207 58 5 3 1929 1983 507850378 507850435 3.790000e-05 60.2
85 TraesCS1D01G274100 chr1B 100.000 30 0 0 1 30 347589439 347589410 4.900000e-04 56.5
86 TraesCS1D01G274100 chr2D 82.353 85 8 1 1508 1592 37236629 37236552 2.260000e-07 67.6
87 TraesCS1D01G274100 chr2D 81.176 85 9 5 1508 1592 534121428 534121351 1.050000e-05 62.1
88 TraesCS1D01G274100 chr2D 100.000 30 0 0 1 30 399508497 399508526 4.900000e-04 56.5
89 TraesCS1D01G274100 chr2D 100.000 30 0 0 1 30 430867038 430867009 4.900000e-04 56.5
90 TraesCS1D01G274100 chr5A 85.000 60 6 3 1928 1984 407937800 407937741 1.360000e-04 58.4
91 TraesCS1D01G274100 chr7D 100.000 30 0 0 1 30 10334462 10334491 4.900000e-04 56.5
92 TraesCS1D01G274100 chr7D 100.000 30 0 0 1 30 546587453 546587482 4.900000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G274100 chr1D 368673103 368676616 3513 True 6490.0 6490 100.00000 1 3514 1 chr1D.!!$R3 3513
1 TraesCS1D01G274100 chr1D 488607542 488612248 4706 False 315.5 481 81.92050 2124 2590 2 chr1D.!!$F6 466
2 TraesCS1D01G274100 chr1D 489301359 489302004 645 True 228.1 372 86.27800 635 1283 2 chr1D.!!$R8 648
3 TraesCS1D01G274100 chr1D 489782662 489783206 544 False 206.5 300 85.72750 2280 2805 2 chr1D.!!$F7 525
4 TraesCS1D01G274100 chr1A 468407732 468411456 3724 True 1153.5 2206 95.28775 556 3514 4 chr1A.!!$R5 2958
5 TraesCS1D01G274100 chr1A 468458904 468462627 3723 True 1146.0 2211 95.06525 556 3514 4 chr1A.!!$R6 2958
6 TraesCS1D01G274100 chrUn 205599865 205602912 3047 True 207.9 350 87.71400 635 2806 2 chrUn.!!$R5 2171
7 TraesCS1D01G274100 chr1B 680744053 680744591 538 True 324.0 324 78.85300 714 1233 1 chr1B.!!$R2 519
8 TraesCS1D01G274100 chr1B 682485087 682488140 3053 True 207.9 350 87.71400 635 2806 2 chr1B.!!$R5 2171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.106708 GGCTCATCCGCATCTGGTTA 59.893 55.0 0.0 0.0 0.0 2.85 F
897 942 0.167033 TTTGTGTGTGTGTGCGTGAC 59.833 50.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2350 0.543174 AGACGGCTCCAGTTCCTTCT 60.543 55.000 0.0 0.0 0.0 2.85 R
2805 8531 2.398498 CACAGTTTGACGACAGGAGAG 58.602 52.381 0.0 0.0 0.0 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.557207 GGCATGATTAGCCGCTTTG 57.443 52.632 0.00 0.00 43.15 2.77
21 22 0.740737 GGCATGATTAGCCGCTTTGT 59.259 50.000 0.00 0.00 43.15 2.83
22 23 1.268743 GGCATGATTAGCCGCTTTGTC 60.269 52.381 0.00 0.00 43.15 3.18
23 24 1.672881 GCATGATTAGCCGCTTTGTCT 59.327 47.619 0.00 0.00 0.00 3.41
24 25 2.286654 GCATGATTAGCCGCTTTGTCTC 60.287 50.000 0.00 0.00 0.00 3.36
25 26 1.640428 TGATTAGCCGCTTTGTCTCG 58.360 50.000 0.00 0.00 0.00 4.04
30 31 2.436646 CCGCTTTGTCTCGGCCAT 60.437 61.111 2.24 0.00 39.14 4.40
31 32 1.153449 CCGCTTTGTCTCGGCCATA 60.153 57.895 2.24 0.00 39.14 2.74
32 33 1.429148 CCGCTTTGTCTCGGCCATAC 61.429 60.000 2.24 0.00 39.14 2.39
33 34 1.429148 CGCTTTGTCTCGGCCATACC 61.429 60.000 2.24 0.00 0.00 2.73
44 45 4.676363 CCATACCGGCCATGGTTT 57.324 55.556 22.18 0.00 43.56 3.27
45 46 2.894858 CCATACCGGCCATGGTTTT 58.105 52.632 22.18 0.00 43.56 2.43
46 47 0.744281 CCATACCGGCCATGGTTTTC 59.256 55.000 22.18 0.00 43.56 2.29
47 48 1.468985 CATACCGGCCATGGTTTTCA 58.531 50.000 14.67 0.00 43.56 2.69
48 49 1.134175 CATACCGGCCATGGTTTTCAC 59.866 52.381 14.67 0.00 43.56 3.18
49 50 0.402504 TACCGGCCATGGTTTTCACT 59.597 50.000 14.67 0.00 43.56 3.41
50 51 0.469144 ACCGGCCATGGTTTTCACTT 60.469 50.000 14.67 0.00 39.99 3.16
51 52 1.202952 ACCGGCCATGGTTTTCACTTA 60.203 47.619 14.67 0.00 39.99 2.24
52 53 1.889829 CCGGCCATGGTTTTCACTTAA 59.110 47.619 14.67 0.00 0.00 1.85
53 54 2.297597 CCGGCCATGGTTTTCACTTAAA 59.702 45.455 14.67 0.00 0.00 1.52
54 55 3.056179 CCGGCCATGGTTTTCACTTAAAT 60.056 43.478 14.67 0.00 0.00 1.40
55 56 3.925913 CGGCCATGGTTTTCACTTAAATG 59.074 43.478 14.67 0.00 0.00 2.32
56 57 4.321601 CGGCCATGGTTTTCACTTAAATGA 60.322 41.667 14.67 0.00 0.00 2.57
57 58 5.624281 CGGCCATGGTTTTCACTTAAATGAT 60.624 40.000 14.67 0.00 0.00 2.45
58 59 6.172630 GGCCATGGTTTTCACTTAAATGATT 58.827 36.000 14.67 0.00 0.00 2.57
59 60 6.092533 GGCCATGGTTTTCACTTAAATGATTG 59.907 38.462 14.67 0.00 0.00 2.67
60 61 6.873076 GCCATGGTTTTCACTTAAATGATTGA 59.127 34.615 14.67 0.00 0.00 2.57
61 62 7.387397 GCCATGGTTTTCACTTAAATGATTGAA 59.613 33.333 14.67 0.00 0.00 2.69
62 63 9.439500 CCATGGTTTTCACTTAAATGATTGAAT 57.561 29.630 2.57 0.00 0.00 2.57
72 73 8.853345 CACTTAAATGATTGAATAGTTGTGTGC 58.147 33.333 0.00 0.00 0.00 4.57
73 74 8.796475 ACTTAAATGATTGAATAGTTGTGTGCT 58.204 29.630 0.00 0.00 0.00 4.40
74 75 9.282247 CTTAAATGATTGAATAGTTGTGTGCTC 57.718 33.333 0.00 0.00 0.00 4.26
75 76 6.822667 AATGATTGAATAGTTGTGTGCTCA 57.177 33.333 0.00 0.00 0.00 4.26
76 77 7.400599 AATGATTGAATAGTTGTGTGCTCAT 57.599 32.000 0.00 0.00 0.00 2.90
77 78 6.185852 TGATTGAATAGTTGTGTGCTCATG 57.814 37.500 0.00 0.00 0.00 3.07
78 79 5.706833 TGATTGAATAGTTGTGTGCTCATGT 59.293 36.000 0.00 0.00 0.00 3.21
79 80 6.878389 TGATTGAATAGTTGTGTGCTCATGTA 59.122 34.615 0.00 0.00 0.00 2.29
80 81 7.390162 TGATTGAATAGTTGTGTGCTCATGTAA 59.610 33.333 0.00 0.00 0.00 2.41
81 82 7.686438 TTGAATAGTTGTGTGCTCATGTAAT 57.314 32.000 0.00 0.00 0.00 1.89
82 83 7.686438 TGAATAGTTGTGTGCTCATGTAATT 57.314 32.000 0.00 0.00 0.00 1.40
83 84 8.785329 TGAATAGTTGTGTGCTCATGTAATTA 57.215 30.769 0.00 0.00 0.00 1.40
84 85 9.394767 TGAATAGTTGTGTGCTCATGTAATTAT 57.605 29.630 0.00 0.00 0.00 1.28
88 89 8.109705 AGTTGTGTGCTCATGTAATTATTTCA 57.890 30.769 0.00 0.00 0.00 2.69
89 90 8.575589 AGTTGTGTGCTCATGTAATTATTTCAA 58.424 29.630 0.00 0.00 0.00 2.69
90 91 9.357652 GTTGTGTGCTCATGTAATTATTTCAAT 57.642 29.630 0.00 0.00 0.00 2.57
91 92 8.914328 TGTGTGCTCATGTAATTATTTCAATG 57.086 30.769 0.00 0.00 0.00 2.82
92 93 7.488792 TGTGTGCTCATGTAATTATTTCAATGC 59.511 33.333 0.00 0.00 0.00 3.56
93 94 7.703621 GTGTGCTCATGTAATTATTTCAATGCT 59.296 33.333 0.00 0.00 0.00 3.79
94 95 8.901793 TGTGCTCATGTAATTATTTCAATGCTA 58.098 29.630 0.00 0.00 0.00 3.49
95 96 9.734620 GTGCTCATGTAATTATTTCAATGCTAA 57.265 29.630 0.00 0.00 0.00 3.09
96 97 9.955208 TGCTCATGTAATTATTTCAATGCTAAG 57.045 29.630 0.00 0.00 0.00 2.18
97 98 9.956720 GCTCATGTAATTATTTCAATGCTAAGT 57.043 29.630 0.00 0.00 0.00 2.24
107 108 7.736447 ATTTCAATGCTAAGTAGTAGATGCC 57.264 36.000 0.00 0.00 30.50 4.40
108 109 6.485830 TTCAATGCTAAGTAGTAGATGCCT 57.514 37.500 0.00 0.00 30.50 4.75
109 110 7.597288 TTCAATGCTAAGTAGTAGATGCCTA 57.403 36.000 0.00 0.00 30.50 3.93
110 111 7.782897 TCAATGCTAAGTAGTAGATGCCTAT 57.217 36.000 0.00 0.00 30.50 2.57
111 112 7.606349 TCAATGCTAAGTAGTAGATGCCTATG 58.394 38.462 0.00 0.00 30.50 2.23
112 113 7.233553 TCAATGCTAAGTAGTAGATGCCTATGT 59.766 37.037 0.00 0.00 30.50 2.29
113 114 6.332735 TGCTAAGTAGTAGATGCCTATGTG 57.667 41.667 0.00 0.00 30.50 3.21
114 115 5.833667 TGCTAAGTAGTAGATGCCTATGTGT 59.166 40.000 0.00 0.00 30.50 3.72
115 116 6.153067 GCTAAGTAGTAGATGCCTATGTGTG 58.847 44.000 0.00 0.00 30.50 3.82
116 117 6.239064 GCTAAGTAGTAGATGCCTATGTGTGT 60.239 42.308 0.00 0.00 30.50 3.72
117 118 5.776173 AGTAGTAGATGCCTATGTGTGTC 57.224 43.478 0.00 0.00 0.00 3.67
118 119 5.450453 AGTAGTAGATGCCTATGTGTGTCT 58.550 41.667 0.00 0.00 0.00 3.41
119 120 5.894393 AGTAGTAGATGCCTATGTGTGTCTT 59.106 40.000 0.00 0.00 0.00 3.01
120 121 5.683876 AGTAGATGCCTATGTGTGTCTTT 57.316 39.130 0.00 0.00 0.00 2.52
121 122 5.665459 AGTAGATGCCTATGTGTGTCTTTC 58.335 41.667 0.00 0.00 0.00 2.62
122 123 3.878778 AGATGCCTATGTGTGTCTTTCC 58.121 45.455 0.00 0.00 0.00 3.13
123 124 3.264193 AGATGCCTATGTGTGTCTTTCCA 59.736 43.478 0.00 0.00 0.00 3.53
124 125 3.500448 TGCCTATGTGTGTCTTTCCAA 57.500 42.857 0.00 0.00 0.00 3.53
125 126 3.826524 TGCCTATGTGTGTCTTTCCAAA 58.173 40.909 0.00 0.00 0.00 3.28
126 127 4.211125 TGCCTATGTGTGTCTTTCCAAAA 58.789 39.130 0.00 0.00 0.00 2.44
127 128 4.832266 TGCCTATGTGTGTCTTTCCAAAAT 59.168 37.500 0.00 0.00 0.00 1.82
128 129 6.007076 TGCCTATGTGTGTCTTTCCAAAATA 58.993 36.000 0.00 0.00 0.00 1.40
129 130 6.663093 TGCCTATGTGTGTCTTTCCAAAATAT 59.337 34.615 0.00 0.00 0.00 1.28
130 131 7.831690 TGCCTATGTGTGTCTTTCCAAAATATA 59.168 33.333 0.00 0.00 0.00 0.86
131 132 8.345565 GCCTATGTGTGTCTTTCCAAAATATAG 58.654 37.037 0.00 0.00 0.00 1.31
132 133 9.396022 CCTATGTGTGTCTTTCCAAAATATAGT 57.604 33.333 0.00 0.00 0.00 2.12
135 136 8.106247 TGTGTGTCTTTCCAAAATATAGTTCC 57.894 34.615 0.00 0.00 0.00 3.62
136 137 7.094975 TGTGTGTCTTTCCAAAATATAGTTCCG 60.095 37.037 0.00 0.00 0.00 4.30
137 138 6.128117 TGTGTCTTTCCAAAATATAGTTCCGC 60.128 38.462 0.00 0.00 0.00 5.54
138 139 5.355910 TGTCTTTCCAAAATATAGTTCCGCC 59.644 40.000 0.00 0.00 0.00 6.13
139 140 5.355910 GTCTTTCCAAAATATAGTTCCGCCA 59.644 40.000 0.00 0.00 0.00 5.69
140 141 5.946972 TCTTTCCAAAATATAGTTCCGCCAA 59.053 36.000 0.00 0.00 0.00 4.52
141 142 6.434652 TCTTTCCAAAATATAGTTCCGCCAAA 59.565 34.615 0.00 0.00 0.00 3.28
142 143 5.828299 TCCAAAATATAGTTCCGCCAAAG 57.172 39.130 0.00 0.00 0.00 2.77
143 144 4.642885 TCCAAAATATAGTTCCGCCAAAGG 59.357 41.667 0.00 0.00 0.00 3.11
144 145 4.202111 CCAAAATATAGTTCCGCCAAAGGG 60.202 45.833 0.00 0.00 37.18 3.95
155 156 0.976641 GCCAAAGGGGGAAAAAGAGG 59.023 55.000 0.00 0.00 37.04 3.69
156 157 1.644509 CCAAAGGGGGAAAAAGAGGG 58.355 55.000 0.00 0.00 0.00 4.30
157 158 1.149077 CCAAAGGGGGAAAAAGAGGGA 59.851 52.381 0.00 0.00 0.00 4.20
158 159 2.427150 CCAAAGGGGGAAAAAGAGGGAA 60.427 50.000 0.00 0.00 0.00 3.97
159 160 3.313791 CAAAGGGGGAAAAAGAGGGAAA 58.686 45.455 0.00 0.00 0.00 3.13
160 161 3.714280 CAAAGGGGGAAAAAGAGGGAAAA 59.286 43.478 0.00 0.00 0.00 2.29
161 162 3.717507 AGGGGGAAAAAGAGGGAAAAA 57.282 42.857 0.00 0.00 0.00 1.94
162 163 3.587498 AGGGGGAAAAAGAGGGAAAAAG 58.413 45.455 0.00 0.00 0.00 2.27
163 164 3.208922 AGGGGGAAAAAGAGGGAAAAAGA 59.791 43.478 0.00 0.00 0.00 2.52
164 165 3.578716 GGGGGAAAAAGAGGGAAAAAGAG 59.421 47.826 0.00 0.00 0.00 2.85
165 166 4.223953 GGGGAAAAAGAGGGAAAAAGAGT 58.776 43.478 0.00 0.00 0.00 3.24
166 167 4.654262 GGGGAAAAAGAGGGAAAAAGAGTT 59.346 41.667 0.00 0.00 0.00 3.01
167 168 5.453339 GGGGAAAAAGAGGGAAAAAGAGTTG 60.453 44.000 0.00 0.00 0.00 3.16
168 169 5.362717 GGGAAAAAGAGGGAAAAAGAGTTGA 59.637 40.000 0.00 0.00 0.00 3.18
169 170 6.127168 GGGAAAAAGAGGGAAAAAGAGTTGAA 60.127 38.462 0.00 0.00 0.00 2.69
170 171 7.327975 GGAAAAAGAGGGAAAAAGAGTTGAAA 58.672 34.615 0.00 0.00 0.00 2.69
171 172 7.492669 GGAAAAAGAGGGAAAAAGAGTTGAAAG 59.507 37.037 0.00 0.00 0.00 2.62
172 173 7.718334 AAAAGAGGGAAAAAGAGTTGAAAGA 57.282 32.000 0.00 0.00 0.00 2.52
173 174 7.718334 AAAGAGGGAAAAAGAGTTGAAAGAA 57.282 32.000 0.00 0.00 0.00 2.52
174 175 6.951062 AGAGGGAAAAAGAGTTGAAAGAAG 57.049 37.500 0.00 0.00 0.00 2.85
175 176 6.663734 AGAGGGAAAAAGAGTTGAAAGAAGA 58.336 36.000 0.00 0.00 0.00 2.87
176 177 7.119387 AGAGGGAAAAAGAGTTGAAAGAAGAA 58.881 34.615 0.00 0.00 0.00 2.52
177 178 7.615757 AGAGGGAAAAAGAGTTGAAAGAAGAAA 59.384 33.333 0.00 0.00 0.00 2.52
178 179 7.776107 AGGGAAAAAGAGTTGAAAGAAGAAAG 58.224 34.615 0.00 0.00 0.00 2.62
179 180 7.615757 AGGGAAAAAGAGTTGAAAGAAGAAAGA 59.384 33.333 0.00 0.00 0.00 2.52
180 181 8.251026 GGGAAAAAGAGTTGAAAGAAGAAAGAA 58.749 33.333 0.00 0.00 0.00 2.52
181 182 9.639601 GGAAAAAGAGTTGAAAGAAGAAAGAAA 57.360 29.630 0.00 0.00 0.00 2.52
201 202 2.365408 AAAGAGAGTAGGGCGTTTCG 57.635 50.000 0.00 0.00 0.00 3.46
202 203 0.531200 AAGAGAGTAGGGCGTTTCGG 59.469 55.000 0.00 0.00 0.00 4.30
203 204 0.611340 AGAGAGTAGGGCGTTTCGGT 60.611 55.000 0.00 0.00 0.00 4.69
204 205 0.458025 GAGAGTAGGGCGTTTCGGTG 60.458 60.000 0.00 0.00 0.00 4.94
205 206 2.047560 AGTAGGGCGTTTCGGTGC 60.048 61.111 0.00 0.00 0.00 5.01
213 214 3.056328 GTTTCGGTGCCCAGGCTC 61.056 66.667 10.58 6.18 42.51 4.70
214 215 3.565214 TTTCGGTGCCCAGGCTCA 61.565 61.111 10.58 0.00 42.51 4.26
215 216 2.905996 TTTCGGTGCCCAGGCTCAT 61.906 57.895 10.58 0.00 42.51 2.90
216 217 2.819984 TTTCGGTGCCCAGGCTCATC 62.820 60.000 10.58 0.00 42.51 2.92
217 218 4.864334 CGGTGCCCAGGCTCATCC 62.864 72.222 10.58 6.48 42.51 3.51
218 219 4.864334 GGTGCCCAGGCTCATCCG 62.864 72.222 10.58 0.00 42.51 4.18
221 222 4.575973 GCCCAGGCTCATCCGCAT 62.576 66.667 0.08 0.00 40.77 4.73
222 223 2.281345 CCCAGGCTCATCCGCATC 60.281 66.667 0.00 0.00 40.77 3.91
223 224 2.815945 CCCAGGCTCATCCGCATCT 61.816 63.158 0.00 0.00 40.77 2.90
224 225 1.597302 CCAGGCTCATCCGCATCTG 60.597 63.158 0.00 0.00 40.77 2.90
225 226 1.597302 CAGGCTCATCCGCATCTGG 60.597 63.158 0.00 0.00 40.77 3.86
226 227 2.068821 AGGCTCATCCGCATCTGGT 61.069 57.895 0.00 0.00 40.77 4.00
227 228 1.153086 GGCTCATCCGCATCTGGTT 60.153 57.895 0.00 0.00 0.00 3.67
228 229 0.106708 GGCTCATCCGCATCTGGTTA 59.893 55.000 0.00 0.00 0.00 2.85
229 230 1.506493 GCTCATCCGCATCTGGTTAG 58.494 55.000 0.00 0.00 0.00 2.34
230 231 1.069204 GCTCATCCGCATCTGGTTAGA 59.931 52.381 0.00 0.00 37.35 2.10
231 232 2.483714 GCTCATCCGCATCTGGTTAGAA 60.484 50.000 0.00 0.00 36.32 2.10
232 233 3.797039 CTCATCCGCATCTGGTTAGAAA 58.203 45.455 0.00 0.00 36.32 2.52
233 234 4.191544 CTCATCCGCATCTGGTTAGAAAA 58.808 43.478 0.00 0.00 36.32 2.29
234 235 4.584874 TCATCCGCATCTGGTTAGAAAAA 58.415 39.130 0.00 0.00 36.32 1.94
287 288 9.904647 CAGAAAATTCCAAATATTTATTGTGCG 57.095 29.630 0.00 0.00 0.00 5.34
288 289 9.651913 AGAAAATTCCAAATATTTATTGTGCGT 57.348 25.926 0.00 0.00 0.00 5.24
303 304 5.820926 TTGTGCGTTAGAAAATTTGATGC 57.179 34.783 0.00 0.00 0.00 3.91
304 305 3.911365 TGTGCGTTAGAAAATTTGATGCG 59.089 39.130 0.00 0.00 0.00 4.73
305 306 3.911964 GTGCGTTAGAAAATTTGATGCGT 59.088 39.130 0.00 0.00 0.00 5.24
306 307 3.911365 TGCGTTAGAAAATTTGATGCGTG 59.089 39.130 0.00 0.00 0.00 5.34
307 308 4.155449 GCGTTAGAAAATTTGATGCGTGA 58.845 39.130 0.00 0.00 0.00 4.35
308 309 4.260656 GCGTTAGAAAATTTGATGCGTGAG 59.739 41.667 0.00 0.00 0.00 3.51
309 310 4.788100 CGTTAGAAAATTTGATGCGTGAGG 59.212 41.667 0.00 0.00 0.00 3.86
310 311 3.221964 AGAAAATTTGATGCGTGAGGC 57.778 42.857 0.00 0.00 43.96 4.70
311 312 2.094545 AGAAAATTTGATGCGTGAGGCC 60.095 45.455 0.00 0.00 42.61 5.19
312 313 0.532115 AAATTTGATGCGTGAGGCCC 59.468 50.000 0.00 0.00 42.61 5.80
313 314 1.656818 AATTTGATGCGTGAGGCCCG 61.657 55.000 0.00 0.00 42.61 6.13
320 321 4.697756 CGTGAGGCCCGCTCCAAA 62.698 66.667 0.00 0.00 0.00 3.28
321 322 2.044946 GTGAGGCCCGCTCCAAAT 60.045 61.111 0.00 0.00 0.00 2.32
322 323 1.678970 GTGAGGCCCGCTCCAAATT 60.679 57.895 0.00 0.00 0.00 1.82
323 324 1.076549 TGAGGCCCGCTCCAAATTT 59.923 52.632 0.00 0.00 0.00 1.82
324 325 0.965363 TGAGGCCCGCTCCAAATTTC 60.965 55.000 0.00 0.00 0.00 2.17
325 326 0.965363 GAGGCCCGCTCCAAATTTCA 60.965 55.000 0.00 0.00 0.00 2.69
326 327 0.541764 AGGCCCGCTCCAAATTTCAA 60.542 50.000 0.00 0.00 0.00 2.69
327 328 0.389817 GGCCCGCTCCAAATTTCAAC 60.390 55.000 0.00 0.00 0.00 3.18
328 329 0.603065 GCCCGCTCCAAATTTCAACT 59.397 50.000 0.00 0.00 0.00 3.16
329 330 1.402852 GCCCGCTCCAAATTTCAACTC 60.403 52.381 0.00 0.00 0.00 3.01
330 331 1.885887 CCCGCTCCAAATTTCAACTCA 59.114 47.619 0.00 0.00 0.00 3.41
331 332 2.493278 CCCGCTCCAAATTTCAACTCAT 59.507 45.455 0.00 0.00 0.00 2.90
332 333 3.056607 CCCGCTCCAAATTTCAACTCATT 60.057 43.478 0.00 0.00 0.00 2.57
333 334 4.559153 CCGCTCCAAATTTCAACTCATTT 58.441 39.130 0.00 0.00 0.00 2.32
334 335 4.386652 CCGCTCCAAATTTCAACTCATTTG 59.613 41.667 0.00 0.00 39.25 2.32
350 351 6.665474 CTCATTTGGATATATGAGCAGCTC 57.335 41.667 16.21 16.21 40.74 4.09
351 352 6.370186 TCATTTGGATATATGAGCAGCTCT 57.630 37.500 23.15 11.20 0.00 4.09
352 353 6.404708 TCATTTGGATATATGAGCAGCTCTC 58.595 40.000 23.15 11.57 42.23 3.20
377 378 3.828875 AAAAAGACAAATCGGGCCAAA 57.171 38.095 4.39 0.00 0.00 3.28
378 379 3.828875 AAAAGACAAATCGGGCCAAAA 57.171 38.095 4.39 0.00 0.00 2.44
379 380 4.350368 AAAAGACAAATCGGGCCAAAAT 57.650 36.364 4.39 0.00 0.00 1.82
380 381 5.476091 AAAAGACAAATCGGGCCAAAATA 57.524 34.783 4.39 0.00 0.00 1.40
381 382 4.718940 AAGACAAATCGGGCCAAAATAG 57.281 40.909 4.39 0.00 0.00 1.73
382 383 3.697166 AGACAAATCGGGCCAAAATAGT 58.303 40.909 4.39 0.00 0.00 2.12
383 384 4.850680 AGACAAATCGGGCCAAAATAGTA 58.149 39.130 4.39 0.00 0.00 1.82
384 385 4.638865 AGACAAATCGGGCCAAAATAGTAC 59.361 41.667 4.39 0.00 0.00 2.73
385 386 4.337145 ACAAATCGGGCCAAAATAGTACA 58.663 39.130 4.39 0.00 0.00 2.90
386 387 4.953579 ACAAATCGGGCCAAAATAGTACAT 59.046 37.500 4.39 0.00 0.00 2.29
387 388 5.163561 ACAAATCGGGCCAAAATAGTACATG 60.164 40.000 4.39 0.00 0.00 3.21
388 389 3.916359 TCGGGCCAAAATAGTACATGA 57.084 42.857 4.39 0.00 0.00 3.07
389 390 4.223556 TCGGGCCAAAATAGTACATGAA 57.776 40.909 4.39 0.00 0.00 2.57
390 391 3.942748 TCGGGCCAAAATAGTACATGAAC 59.057 43.478 4.39 0.00 0.00 3.18
391 392 3.692101 CGGGCCAAAATAGTACATGAACA 59.308 43.478 4.39 0.00 0.00 3.18
392 393 4.201910 CGGGCCAAAATAGTACATGAACAG 60.202 45.833 4.39 0.00 0.00 3.16
393 394 4.705023 GGGCCAAAATAGTACATGAACAGT 59.295 41.667 4.39 0.00 0.00 3.55
394 395 5.883673 GGGCCAAAATAGTACATGAACAGTA 59.116 40.000 4.39 0.00 0.00 2.74
395 396 6.376018 GGGCCAAAATAGTACATGAACAGTAA 59.624 38.462 4.39 0.00 0.00 2.24
396 397 7.094118 GGGCCAAAATAGTACATGAACAGTAAA 60.094 37.037 4.39 0.00 0.00 2.01
397 398 7.753580 GGCCAAAATAGTACATGAACAGTAAAC 59.246 37.037 0.00 0.00 0.00 2.01
398 399 8.512138 GCCAAAATAGTACATGAACAGTAAACT 58.488 33.333 0.00 0.00 0.00 2.66
406 407 8.952278 AGTACATGAACAGTAAACTTTTTCACA 58.048 29.630 0.00 0.00 31.73 3.58
407 408 9.221775 GTACATGAACAGTAAACTTTTTCACAG 57.778 33.333 0.00 5.58 31.73 3.66
408 409 8.050778 ACATGAACAGTAAACTTTTTCACAGA 57.949 30.769 0.00 0.00 31.73 3.41
409 410 7.968405 ACATGAACAGTAAACTTTTTCACAGAC 59.032 33.333 0.00 0.00 31.73 3.51
410 411 6.848451 TGAACAGTAAACTTTTTCACAGACC 58.152 36.000 1.45 0.00 0.00 3.85
411 412 5.830000 ACAGTAAACTTTTTCACAGACCC 57.170 39.130 0.00 0.00 0.00 4.46
412 413 5.506708 ACAGTAAACTTTTTCACAGACCCT 58.493 37.500 0.00 0.00 0.00 4.34
413 414 5.589050 ACAGTAAACTTTTTCACAGACCCTC 59.411 40.000 0.00 0.00 0.00 4.30
414 415 5.588648 CAGTAAACTTTTTCACAGACCCTCA 59.411 40.000 0.00 0.00 0.00 3.86
415 416 6.094881 CAGTAAACTTTTTCACAGACCCTCAA 59.905 38.462 0.00 0.00 0.00 3.02
416 417 6.833933 AGTAAACTTTTTCACAGACCCTCAAT 59.166 34.615 0.00 0.00 0.00 2.57
417 418 6.544928 AAACTTTTTCACAGACCCTCAATT 57.455 33.333 0.00 0.00 0.00 2.32
418 419 6.544928 AACTTTTTCACAGACCCTCAATTT 57.455 33.333 0.00 0.00 0.00 1.82
419 420 5.906073 ACTTTTTCACAGACCCTCAATTTG 58.094 37.500 0.00 0.00 0.00 2.32
420 421 5.422012 ACTTTTTCACAGACCCTCAATTTGT 59.578 36.000 0.00 0.00 0.00 2.83
421 422 5.514274 TTTTCACAGACCCTCAATTTGTC 57.486 39.130 0.00 0.00 0.00 3.18
422 423 4.437682 TTCACAGACCCTCAATTTGTCT 57.562 40.909 0.00 0.00 39.86 3.41
423 424 4.437682 TCACAGACCCTCAATTTGTCTT 57.562 40.909 0.00 0.00 37.25 3.01
424 425 4.792068 TCACAGACCCTCAATTTGTCTTT 58.208 39.130 0.00 0.00 37.25 2.52
425 426 5.200483 TCACAGACCCTCAATTTGTCTTTT 58.800 37.500 0.00 0.00 37.25 2.27
426 427 5.656416 TCACAGACCCTCAATTTGTCTTTTT 59.344 36.000 0.00 0.00 37.25 1.94
449 450 1.774110 TGAGAGCTCCTCAGATGTCC 58.226 55.000 10.93 0.00 46.38 4.02
450 451 1.006400 TGAGAGCTCCTCAGATGTCCA 59.994 52.381 10.93 0.00 46.38 4.02
451 452 2.106566 GAGAGCTCCTCAGATGTCCAA 58.893 52.381 10.93 0.00 41.58 3.53
452 453 2.499289 GAGAGCTCCTCAGATGTCCAAA 59.501 50.000 10.93 0.00 41.58 3.28
453 454 3.113824 AGAGCTCCTCAGATGTCCAAAT 58.886 45.455 10.93 0.00 32.06 2.32
454 455 3.118334 AGAGCTCCTCAGATGTCCAAATG 60.118 47.826 10.93 0.00 32.06 2.32
455 456 2.842496 AGCTCCTCAGATGTCCAAATGA 59.158 45.455 0.00 0.00 0.00 2.57
456 457 3.458857 AGCTCCTCAGATGTCCAAATGAT 59.541 43.478 0.00 0.00 0.00 2.45
457 458 4.079901 AGCTCCTCAGATGTCCAAATGATT 60.080 41.667 0.00 0.00 0.00 2.57
458 459 4.643784 GCTCCTCAGATGTCCAAATGATTT 59.356 41.667 0.00 0.00 0.00 2.17
459 460 5.824624 GCTCCTCAGATGTCCAAATGATTTA 59.175 40.000 0.00 0.00 0.00 1.40
460 461 6.319658 GCTCCTCAGATGTCCAAATGATTTAA 59.680 38.462 0.00 0.00 0.00 1.52
461 462 7.148018 GCTCCTCAGATGTCCAAATGATTTAAA 60.148 37.037 0.00 0.00 0.00 1.52
462 463 8.648698 TCCTCAGATGTCCAAATGATTTAAAA 57.351 30.769 0.00 0.00 0.00 1.52
463 464 9.087871 TCCTCAGATGTCCAAATGATTTAAAAA 57.912 29.630 0.00 0.00 0.00 1.94
464 465 9.880157 CCTCAGATGTCCAAATGATTTAAAAAT 57.120 29.630 0.00 0.00 0.00 1.82
471 472 8.494347 TGTCCAAATGATTTAAAAATTGAAGCG 58.506 29.630 0.00 0.00 0.00 4.68
472 473 7.956943 GTCCAAATGATTTAAAAATTGAAGCGG 59.043 33.333 0.00 0.00 0.00 5.52
473 474 7.875041 TCCAAATGATTTAAAAATTGAAGCGGA 59.125 29.630 0.00 0.00 0.00 5.54
474 475 7.956943 CCAAATGATTTAAAAATTGAAGCGGAC 59.043 33.333 0.00 0.00 0.00 4.79
475 476 7.595311 AATGATTTAAAAATTGAAGCGGACC 57.405 32.000 0.00 0.00 0.00 4.46
476 477 6.339587 TGATTTAAAAATTGAAGCGGACCT 57.660 33.333 0.00 0.00 0.00 3.85
477 478 6.386654 TGATTTAAAAATTGAAGCGGACCTC 58.613 36.000 0.00 0.00 0.00 3.85
478 479 5.776173 TTTAAAAATTGAAGCGGACCTCA 57.224 34.783 0.00 0.00 0.00 3.86
479 480 3.643159 AAAAATTGAAGCGGACCTCAC 57.357 42.857 0.00 0.00 0.00 3.51
480 481 2.270352 AAATTGAAGCGGACCTCACA 57.730 45.000 0.00 0.00 0.00 3.58
481 482 1.523758 AATTGAAGCGGACCTCACAC 58.476 50.000 0.00 0.00 0.00 3.82
482 483 0.670546 ATTGAAGCGGACCTCACACG 60.671 55.000 0.00 0.00 0.00 4.49
483 484 2.023414 TTGAAGCGGACCTCACACGT 62.023 55.000 0.00 0.00 0.00 4.49
484 485 1.733399 GAAGCGGACCTCACACGTC 60.733 63.158 0.00 0.00 0.00 4.34
485 486 2.416244 GAAGCGGACCTCACACGTCA 62.416 60.000 0.00 0.00 31.55 4.35
486 487 2.023414 AAGCGGACCTCACACGTCAA 62.023 55.000 0.00 0.00 31.55 3.18
487 488 1.593209 GCGGACCTCACACGTCAAA 60.593 57.895 0.00 0.00 31.55 2.69
488 489 0.949105 GCGGACCTCACACGTCAAAT 60.949 55.000 0.00 0.00 31.55 2.32
489 490 1.508632 CGGACCTCACACGTCAAATT 58.491 50.000 0.00 0.00 31.55 1.82
490 491 1.194547 CGGACCTCACACGTCAAATTG 59.805 52.381 0.00 0.00 31.55 2.32
491 492 2.218603 GGACCTCACACGTCAAATTGT 58.781 47.619 0.00 0.00 31.55 2.71
492 493 3.395639 GGACCTCACACGTCAAATTGTA 58.604 45.455 0.00 0.00 31.55 2.41
493 494 4.000988 GGACCTCACACGTCAAATTGTAT 58.999 43.478 0.00 0.00 31.55 2.29
494 495 5.172934 GGACCTCACACGTCAAATTGTATA 58.827 41.667 0.00 0.00 31.55 1.47
495 496 5.063060 GGACCTCACACGTCAAATTGTATAC 59.937 44.000 0.00 0.00 31.55 1.47
496 497 4.933400 ACCTCACACGTCAAATTGTATACC 59.067 41.667 0.00 0.00 0.00 2.73
497 498 5.175859 CCTCACACGTCAAATTGTATACCT 58.824 41.667 0.00 0.00 0.00 3.08
498 499 5.291128 CCTCACACGTCAAATTGTATACCTC 59.709 44.000 0.00 0.00 0.00 3.85
499 500 5.785243 TCACACGTCAAATTGTATACCTCA 58.215 37.500 0.00 0.00 0.00 3.86
500 501 5.636121 TCACACGTCAAATTGTATACCTCAC 59.364 40.000 0.00 0.00 0.00 3.51
501 502 4.933400 ACACGTCAAATTGTATACCTCACC 59.067 41.667 0.00 0.00 0.00 4.02
502 503 4.932799 CACGTCAAATTGTATACCTCACCA 59.067 41.667 0.00 0.00 0.00 4.17
503 504 5.584649 CACGTCAAATTGTATACCTCACCAT 59.415 40.000 0.00 0.00 0.00 3.55
504 505 6.093495 CACGTCAAATTGTATACCTCACCATT 59.907 38.462 0.00 0.00 0.00 3.16
505 506 6.657541 ACGTCAAATTGTATACCTCACCATTT 59.342 34.615 0.00 0.00 0.00 2.32
506 507 6.966632 CGTCAAATTGTATACCTCACCATTTG 59.033 38.462 0.00 6.06 38.99 2.32
507 508 7.361713 CGTCAAATTGTATACCTCACCATTTGT 60.362 37.037 0.00 0.00 38.85 2.83
508 509 8.303876 GTCAAATTGTATACCTCACCATTTGTT 58.696 33.333 0.00 0.00 38.85 2.83
509 510 8.865090 TCAAATTGTATACCTCACCATTTGTTT 58.135 29.630 0.00 0.00 38.85 2.83
510 511 9.487790 CAAATTGTATACCTCACCATTTGTTTT 57.512 29.630 0.00 0.00 35.70 2.43
512 513 9.487790 AATTGTATACCTCACCATTTGTTTTTG 57.512 29.630 0.00 0.00 0.00 2.44
513 514 6.987386 TGTATACCTCACCATTTGTTTTTGG 58.013 36.000 0.00 0.00 39.02 3.28
514 515 6.778069 TGTATACCTCACCATTTGTTTTTGGA 59.222 34.615 0.00 0.00 36.79 3.53
515 516 6.933514 ATACCTCACCATTTGTTTTTGGAT 57.066 33.333 0.00 0.00 36.79 3.41
516 517 5.628797 ACCTCACCATTTGTTTTTGGATT 57.371 34.783 0.00 0.00 36.79 3.01
517 518 6.000246 ACCTCACCATTTGTTTTTGGATTT 58.000 33.333 0.00 0.00 36.79 2.17
518 519 6.422333 ACCTCACCATTTGTTTTTGGATTTT 58.578 32.000 0.00 0.00 36.79 1.82
519 520 6.889177 ACCTCACCATTTGTTTTTGGATTTTT 59.111 30.769 0.00 0.00 36.79 1.94
576 577 3.260483 GCACGCAGATGAGCTCGG 61.260 66.667 9.64 0.00 0.00 4.63
582 583 1.145598 CAGATGAGCTCGGGTGCAT 59.854 57.895 9.64 0.00 34.99 3.96
599 600 4.338118 GGTGCATAGATGGATTTTCGGAAA 59.662 41.667 0.00 0.00 0.00 3.13
633 634 1.611673 CGAAATCTCCACAGTTGGGCT 60.612 52.381 0.00 0.00 44.11 5.19
660 661 6.678568 AAAGAACTCTCCAAGATCAAGAGA 57.321 37.500 16.57 12.75 39.09 3.10
891 936 2.096657 TCGATGGTTTTGTGTGTGTGTG 59.903 45.455 0.00 0.00 0.00 3.82
892 937 2.192624 GATGGTTTTGTGTGTGTGTGC 58.807 47.619 0.00 0.00 0.00 4.57
895 940 0.981240 GTTTTGTGTGTGTGTGCGTG 59.019 50.000 0.00 0.00 0.00 5.34
896 941 0.875059 TTTTGTGTGTGTGTGCGTGA 59.125 45.000 0.00 0.00 0.00 4.35
897 942 0.167033 TTTGTGTGTGTGTGCGTGAC 59.833 50.000 0.00 0.00 0.00 3.67
900 945 2.583868 GTGTGTGTGCGTGACGGA 60.584 61.111 7.25 0.00 0.00 4.69
909 954 3.099732 GTGCGTGACGGACTTTTTATC 57.900 47.619 22.18 0.00 44.36 1.75
910 955 2.070783 TGCGTGACGGACTTTTTATCC 58.929 47.619 7.25 0.00 0.00 2.59
911 956 2.289195 TGCGTGACGGACTTTTTATCCT 60.289 45.455 7.25 0.00 33.70 3.24
912 957 3.056678 TGCGTGACGGACTTTTTATCCTA 60.057 43.478 7.25 0.00 33.70 2.94
913 958 3.928375 GCGTGACGGACTTTTTATCCTAA 59.072 43.478 7.25 0.00 33.70 2.69
916 961 5.501897 CGTGACGGACTTTTTATCCTAATGC 60.502 44.000 0.00 0.00 33.70 3.56
917 962 4.879545 TGACGGACTTTTTATCCTAATGCC 59.120 41.667 0.00 0.00 33.70 4.40
920 965 3.004419 GGACTTTTTATCCTAATGCCGGC 59.996 47.826 22.73 22.73 33.03 6.13
1305 1372 4.795268 ACTTAGCGTCATCATGTATACCG 58.205 43.478 0.00 0.00 0.00 4.02
1431 1498 8.397906 TCGGTTGATCTGATCATGAATTTTTAC 58.602 33.333 20.16 11.83 39.39 2.01
1500 1567 3.055240 ACCATCTCCTCTTCTTCTTGCTG 60.055 47.826 0.00 0.00 0.00 4.41
1537 1604 7.098074 AGTACTCCCTCTGTAAAGAAATACG 57.902 40.000 0.00 0.00 0.00 3.06
1639 1706 4.297891 CACACGCACACACTGCCG 62.298 66.667 0.00 0.00 43.84 5.69
1666 1733 3.355378 TCCACTAGCCCAACATGATTTG 58.645 45.455 0.00 0.00 0.00 2.32
1676 1743 5.786311 CCCAACATGATTTGTGTTTCTCAT 58.214 37.500 0.00 0.00 38.99 2.90
1701 1768 1.069204 TCAAGGATCGATGTAGCCTGC 59.931 52.381 0.54 0.00 0.00 4.85
1742 1809 2.206815 TGAAACAGCAACACACATGC 57.793 45.000 0.00 0.00 44.15 4.06
1803 1870 9.632638 AATTACTTGCTTATCATGGTCATACTT 57.367 29.630 0.00 0.00 0.00 2.24
1816 1883 4.836175 TGGTCATACTTGTCTAACCTGACA 59.164 41.667 0.00 0.00 44.17 3.58
1857 1924 7.982252 ACAGGACTACATTGGAATCATATCAT 58.018 34.615 0.00 0.00 0.00 2.45
2007 2203 1.463674 AATCGGGCAAGTGTGATTCC 58.536 50.000 0.00 0.00 0.00 3.01
2025 2221 3.339253 TCCGTGACTAGTAGCTACACA 57.661 47.619 25.28 15.64 0.00 3.72
2154 2350 1.035385 CAGCATGCTGGCAAGATCCA 61.035 55.000 35.39 0.00 40.17 3.41
2256 2452 2.641815 AGAAGGAACAGCCAGATGAGTT 59.358 45.455 0.00 0.00 40.02 3.01
2728 8430 8.025445 GTCTTGAAGTGATTGCAATCAACTTAT 58.975 33.333 36.90 22.71 46.13 1.73
2993 9398 3.384146 TGAAATTTGAGAGCAAACCAGCA 59.616 39.130 0.00 0.00 45.94 4.41
3099 9506 5.390613 CACGCCTTTAATTACACTTTGAGG 58.609 41.667 0.00 0.00 0.00 3.86
3110 9517 0.486879 ACTTTGAGGATTTGCCCCCA 59.513 50.000 0.00 0.00 37.37 4.96
3111 9518 1.188863 CTTTGAGGATTTGCCCCCAG 58.811 55.000 0.00 0.00 37.37 4.45
3153 9572 3.631250 TGTAATCTTGAGGATTTGCCCC 58.369 45.455 0.00 0.00 41.42 5.80
3187 9606 3.056304 CCACGGCAAAATAACCAACAAG 58.944 45.455 0.00 0.00 0.00 3.16
3249 9668 2.357952 TCGTTCTGTCCCAGATATCACG 59.642 50.000 5.32 8.96 40.39 4.35
3258 9677 1.604278 CCAGATATCACGCTCGTCTGA 59.396 52.381 5.32 0.00 38.81 3.27
3279 9698 2.098233 CGATTTACGTGGCAGCGGT 61.098 57.895 0.00 3.27 37.22 5.68
3292 9711 1.837051 AGCGGTGAAGGTGACCTCA 60.837 57.895 3.76 1.77 30.89 3.86
3312 9731 4.039357 CTCCACGACGACAGCGGT 62.039 66.667 0.00 0.00 43.17 5.68
3351 9770 2.236395 ACCTGGTAAGATGTGGCACTAC 59.764 50.000 19.83 12.23 0.00 2.73
3369 9788 1.815421 CATGCCCTTCCTTCGACCG 60.815 63.158 0.00 0.00 0.00 4.79
3380 9799 1.867919 CTTCGACCGTCACCTGCTCT 61.868 60.000 0.00 0.00 0.00 4.09
3423 9843 2.482336 TGCAACATGTCAATACGTCCAC 59.518 45.455 0.00 0.00 0.00 4.02
3439 9859 4.223477 ACGTCCACCTTTTGCCTTAGTATA 59.777 41.667 0.00 0.00 0.00 1.47
3465 9885 7.787028 AGTCTGAACCAACTCCTAGATTTATC 58.213 38.462 0.00 0.00 0.00 1.75
3490 9910 8.875168 TCCCCAAAACATAGTTAATCAACAAAT 58.125 29.630 0.00 0.00 37.10 2.32
3491 9911 8.934825 CCCCAAAACATAGTTAATCAACAAATG 58.065 33.333 0.00 0.00 37.10 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.740737 ACAAAGCGGCTAATCATGCC 59.259 50.000 1.35 0.00 46.42 4.40
3 4 1.672881 AGACAAAGCGGCTAATCATGC 59.327 47.619 1.35 0.00 0.00 4.06
5 6 2.205074 CGAGACAAAGCGGCTAATCAT 58.795 47.619 1.35 0.00 0.00 2.45
6 7 1.640428 CGAGACAAAGCGGCTAATCA 58.360 50.000 1.35 0.00 0.00 2.57
7 8 0.931005 CCGAGACAAAGCGGCTAATC 59.069 55.000 1.35 1.15 41.17 1.75
8 9 3.065575 CCGAGACAAAGCGGCTAAT 57.934 52.632 1.35 0.00 41.17 1.73
9 10 4.590487 CCGAGACAAAGCGGCTAA 57.410 55.556 1.35 0.00 41.17 3.09
14 15 1.429148 GGTATGGCCGAGACAAAGCG 61.429 60.000 0.00 0.00 0.00 4.68
15 16 2.394604 GGTATGGCCGAGACAAAGC 58.605 57.895 0.00 0.00 0.00 3.51
28 29 1.134175 GTGAAAACCATGGCCGGTATG 59.866 52.381 13.04 8.61 38.76 2.39
29 30 1.005450 AGTGAAAACCATGGCCGGTAT 59.995 47.619 13.04 0.00 38.76 2.73
30 31 0.402504 AGTGAAAACCATGGCCGGTA 59.597 50.000 13.04 0.00 38.76 4.02
31 32 0.469144 AAGTGAAAACCATGGCCGGT 60.469 50.000 13.04 0.00 42.71 5.28
32 33 1.540267 TAAGTGAAAACCATGGCCGG 58.460 50.000 13.04 0.00 0.00 6.13
33 34 3.651803 TTTAAGTGAAAACCATGGCCG 57.348 42.857 13.04 0.00 0.00 6.13
34 35 5.146010 TCATTTAAGTGAAAACCATGGCC 57.854 39.130 13.04 0.00 0.00 5.36
35 36 6.873076 TCAATCATTTAAGTGAAAACCATGGC 59.127 34.615 13.04 0.00 0.00 4.40
36 37 8.830201 TTCAATCATTTAAGTGAAAACCATGG 57.170 30.769 11.19 11.19 0.00 3.66
46 47 8.853345 GCACACAACTATTCAATCATTTAAGTG 58.147 33.333 0.00 0.00 0.00 3.16
47 48 8.796475 AGCACACAACTATTCAATCATTTAAGT 58.204 29.630 0.00 0.00 0.00 2.24
48 49 9.282247 GAGCACACAACTATTCAATCATTTAAG 57.718 33.333 0.00 0.00 0.00 1.85
49 50 8.791675 TGAGCACACAACTATTCAATCATTTAA 58.208 29.630 0.00 0.00 0.00 1.52
50 51 8.334263 TGAGCACACAACTATTCAATCATTTA 57.666 30.769 0.00 0.00 0.00 1.40
51 52 7.218228 TGAGCACACAACTATTCAATCATTT 57.782 32.000 0.00 0.00 0.00 2.32
52 53 6.822667 TGAGCACACAACTATTCAATCATT 57.177 33.333 0.00 0.00 0.00 2.57
53 54 6.376299 ACATGAGCACACAACTATTCAATCAT 59.624 34.615 0.00 0.00 0.00 2.45
54 55 5.706833 ACATGAGCACACAACTATTCAATCA 59.293 36.000 0.00 0.00 0.00 2.57
55 56 6.187125 ACATGAGCACACAACTATTCAATC 57.813 37.500 0.00 0.00 0.00 2.67
56 57 7.686438 TTACATGAGCACACAACTATTCAAT 57.314 32.000 0.00 0.00 0.00 2.57
57 58 7.686438 ATTACATGAGCACACAACTATTCAA 57.314 32.000 0.00 0.00 0.00 2.69
58 59 7.686438 AATTACATGAGCACACAACTATTCA 57.314 32.000 0.00 0.00 0.00 2.57
62 63 9.225436 TGAAATAATTACATGAGCACACAACTA 57.775 29.630 0.00 0.00 0.00 2.24
63 64 8.109705 TGAAATAATTACATGAGCACACAACT 57.890 30.769 0.00 0.00 0.00 3.16
64 65 8.741101 TTGAAATAATTACATGAGCACACAAC 57.259 30.769 0.00 0.00 0.00 3.32
65 66 9.356433 CATTGAAATAATTACATGAGCACACAA 57.644 29.630 0.00 0.00 0.00 3.33
66 67 7.488792 GCATTGAAATAATTACATGAGCACACA 59.511 33.333 0.00 0.00 0.00 3.72
67 68 7.703621 AGCATTGAAATAATTACATGAGCACAC 59.296 33.333 0.00 0.00 0.00 3.82
68 69 7.774134 AGCATTGAAATAATTACATGAGCACA 58.226 30.769 0.00 0.00 0.00 4.57
69 70 9.734620 TTAGCATTGAAATAATTACATGAGCAC 57.265 29.630 0.00 0.00 0.00 4.40
70 71 9.955208 CTTAGCATTGAAATAATTACATGAGCA 57.045 29.630 0.00 0.00 0.00 4.26
71 72 9.956720 ACTTAGCATTGAAATAATTACATGAGC 57.043 29.630 0.00 0.00 0.00 4.26
81 82 9.273016 GGCATCTACTACTTAGCATTGAAATAA 57.727 33.333 0.00 0.00 0.00 1.40
82 83 8.651389 AGGCATCTACTACTTAGCATTGAAATA 58.349 33.333 0.00 0.00 0.00 1.40
83 84 7.512992 AGGCATCTACTACTTAGCATTGAAAT 58.487 34.615 0.00 0.00 0.00 2.17
84 85 6.889198 AGGCATCTACTACTTAGCATTGAAA 58.111 36.000 0.00 0.00 0.00 2.69
85 86 6.485830 AGGCATCTACTACTTAGCATTGAA 57.514 37.500 0.00 0.00 0.00 2.69
86 87 7.233553 ACATAGGCATCTACTACTTAGCATTGA 59.766 37.037 0.00 0.00 0.00 2.57
87 88 7.330454 CACATAGGCATCTACTACTTAGCATTG 59.670 40.741 0.00 0.00 0.00 2.82
88 89 7.015682 ACACATAGGCATCTACTACTTAGCATT 59.984 37.037 0.00 0.00 0.00 3.56
89 90 6.495181 ACACATAGGCATCTACTACTTAGCAT 59.505 38.462 0.00 0.00 0.00 3.79
90 91 5.833667 ACACATAGGCATCTACTACTTAGCA 59.166 40.000 0.00 0.00 0.00 3.49
91 92 6.153067 CACACATAGGCATCTACTACTTAGC 58.847 44.000 0.00 0.00 0.00 3.09
92 93 7.229707 AGACACACATAGGCATCTACTACTTAG 59.770 40.741 0.00 0.00 0.00 2.18
93 94 7.061054 AGACACACATAGGCATCTACTACTTA 58.939 38.462 0.00 0.00 0.00 2.24
94 95 5.894393 AGACACACATAGGCATCTACTACTT 59.106 40.000 0.00 0.00 0.00 2.24
95 96 5.450453 AGACACACATAGGCATCTACTACT 58.550 41.667 0.00 0.00 0.00 2.57
96 97 5.776173 AGACACACATAGGCATCTACTAC 57.224 43.478 0.00 0.00 0.00 2.73
97 98 6.183360 GGAAAGACACACATAGGCATCTACTA 60.183 42.308 0.00 0.00 0.00 1.82
98 99 5.395768 GGAAAGACACACATAGGCATCTACT 60.396 44.000 0.00 0.00 0.00 2.57
99 100 4.811557 GGAAAGACACACATAGGCATCTAC 59.188 45.833 0.00 0.00 0.00 2.59
100 101 4.469586 TGGAAAGACACACATAGGCATCTA 59.530 41.667 0.00 0.00 0.00 1.98
101 102 3.264193 TGGAAAGACACACATAGGCATCT 59.736 43.478 0.00 0.00 0.00 2.90
102 103 3.609853 TGGAAAGACACACATAGGCATC 58.390 45.455 0.00 0.00 0.00 3.91
103 104 3.719268 TGGAAAGACACACATAGGCAT 57.281 42.857 0.00 0.00 0.00 4.40
104 105 3.500448 TTGGAAAGACACACATAGGCA 57.500 42.857 0.00 0.00 0.00 4.75
105 106 4.846779 TTTTGGAAAGACACACATAGGC 57.153 40.909 0.00 0.00 0.00 3.93
106 107 9.396022 ACTATATTTTGGAAAGACACACATAGG 57.604 33.333 0.00 0.00 0.00 2.57
109 110 8.739972 GGAACTATATTTTGGAAAGACACACAT 58.260 33.333 0.00 0.00 0.00 3.21
110 111 7.094975 CGGAACTATATTTTGGAAAGACACACA 60.095 37.037 0.00 0.00 0.00 3.72
111 112 7.241376 CGGAACTATATTTTGGAAAGACACAC 58.759 38.462 0.00 0.00 0.00 3.82
112 113 6.128117 GCGGAACTATATTTTGGAAAGACACA 60.128 38.462 0.00 0.00 0.00 3.72
113 114 6.255950 GCGGAACTATATTTTGGAAAGACAC 58.744 40.000 0.00 0.00 0.00 3.67
114 115 5.355910 GGCGGAACTATATTTTGGAAAGACA 59.644 40.000 0.00 0.00 0.00 3.41
115 116 5.355910 TGGCGGAACTATATTTTGGAAAGAC 59.644 40.000 0.00 0.00 0.00 3.01
116 117 5.502079 TGGCGGAACTATATTTTGGAAAGA 58.498 37.500 0.00 0.00 0.00 2.52
117 118 5.828299 TGGCGGAACTATATTTTGGAAAG 57.172 39.130 0.00 0.00 0.00 2.62
118 119 6.350612 CCTTTGGCGGAACTATATTTTGGAAA 60.351 38.462 0.00 0.00 0.00 3.13
119 120 5.126384 CCTTTGGCGGAACTATATTTTGGAA 59.874 40.000 0.00 0.00 0.00 3.53
120 121 4.642885 CCTTTGGCGGAACTATATTTTGGA 59.357 41.667 0.00 0.00 0.00 3.53
121 122 4.202111 CCCTTTGGCGGAACTATATTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
122 123 4.202111 CCCCTTTGGCGGAACTATATTTTG 60.202 45.833 0.00 0.00 0.00 2.44
123 124 3.958147 CCCCTTTGGCGGAACTATATTTT 59.042 43.478 0.00 0.00 0.00 1.82
124 125 3.562182 CCCCTTTGGCGGAACTATATTT 58.438 45.455 0.00 0.00 0.00 1.40
125 126 2.158519 CCCCCTTTGGCGGAACTATATT 60.159 50.000 0.00 0.00 0.00 1.28
126 127 1.423921 CCCCCTTTGGCGGAACTATAT 59.576 52.381 0.00 0.00 0.00 0.86
127 128 0.841289 CCCCCTTTGGCGGAACTATA 59.159 55.000 0.00 0.00 0.00 1.31
128 129 0.917333 TCCCCCTTTGGCGGAACTAT 60.917 55.000 0.00 0.00 30.64 2.12
129 130 1.135068 TTCCCCCTTTGGCGGAACTA 61.135 55.000 0.00 0.00 36.58 2.24
130 131 2.014033 TTTCCCCCTTTGGCGGAACT 62.014 55.000 2.50 0.00 39.35 3.01
131 132 1.116536 TTTTCCCCCTTTGGCGGAAC 61.117 55.000 2.50 0.00 39.35 3.62
132 133 0.398664 TTTTTCCCCCTTTGGCGGAA 60.399 50.000 0.00 0.00 38.47 4.30
133 134 0.830023 CTTTTTCCCCCTTTGGCGGA 60.830 55.000 0.00 0.00 31.41 5.54
134 135 0.830023 TCTTTTTCCCCCTTTGGCGG 60.830 55.000 0.00 0.00 0.00 6.13
135 136 0.603065 CTCTTTTTCCCCCTTTGGCG 59.397 55.000 0.00 0.00 0.00 5.69
136 137 0.976641 CCTCTTTTTCCCCCTTTGGC 59.023 55.000 0.00 0.00 0.00 4.52
137 138 1.149077 TCCCTCTTTTTCCCCCTTTGG 59.851 52.381 0.00 0.00 0.00 3.28
138 139 2.694616 TCCCTCTTTTTCCCCCTTTG 57.305 50.000 0.00 0.00 0.00 2.77
139 140 3.717507 TTTCCCTCTTTTTCCCCCTTT 57.282 42.857 0.00 0.00 0.00 3.11
140 141 3.717507 TTTTCCCTCTTTTTCCCCCTT 57.282 42.857 0.00 0.00 0.00 3.95
141 142 3.208922 TCTTTTTCCCTCTTTTTCCCCCT 59.791 43.478 0.00 0.00 0.00 4.79
142 143 3.578716 CTCTTTTTCCCTCTTTTTCCCCC 59.421 47.826 0.00 0.00 0.00 5.40
143 144 4.223953 ACTCTTTTTCCCTCTTTTTCCCC 58.776 43.478 0.00 0.00 0.00 4.81
144 145 5.362717 TCAACTCTTTTTCCCTCTTTTTCCC 59.637 40.000 0.00 0.00 0.00 3.97
145 146 6.465439 TCAACTCTTTTTCCCTCTTTTTCC 57.535 37.500 0.00 0.00 0.00 3.13
146 147 8.251026 TCTTTCAACTCTTTTTCCCTCTTTTTC 58.749 33.333 0.00 0.00 0.00 2.29
147 148 8.134202 TCTTTCAACTCTTTTTCCCTCTTTTT 57.866 30.769 0.00 0.00 0.00 1.94
148 149 7.718334 TCTTTCAACTCTTTTTCCCTCTTTT 57.282 32.000 0.00 0.00 0.00 2.27
149 150 7.615757 TCTTCTTTCAACTCTTTTTCCCTCTTT 59.384 33.333 0.00 0.00 0.00 2.52
150 151 7.119387 TCTTCTTTCAACTCTTTTTCCCTCTT 58.881 34.615 0.00 0.00 0.00 2.85
151 152 6.663734 TCTTCTTTCAACTCTTTTTCCCTCT 58.336 36.000 0.00 0.00 0.00 3.69
152 153 6.944234 TCTTCTTTCAACTCTTTTTCCCTC 57.056 37.500 0.00 0.00 0.00 4.30
153 154 7.615757 TCTTTCTTCTTTCAACTCTTTTTCCCT 59.384 33.333 0.00 0.00 0.00 4.20
154 155 7.772166 TCTTTCTTCTTTCAACTCTTTTTCCC 58.228 34.615 0.00 0.00 0.00 3.97
155 156 9.639601 TTTCTTTCTTCTTTCAACTCTTTTTCC 57.360 29.630 0.00 0.00 0.00 3.13
180 181 3.064931 CGAAACGCCCTACTCTCTTTTT 58.935 45.455 0.00 0.00 0.00 1.94
181 182 2.612221 CCGAAACGCCCTACTCTCTTTT 60.612 50.000 0.00 0.00 0.00 2.27
182 183 1.067071 CCGAAACGCCCTACTCTCTTT 60.067 52.381 0.00 0.00 0.00 2.52
183 184 0.531200 CCGAAACGCCCTACTCTCTT 59.469 55.000 0.00 0.00 0.00 2.85
184 185 0.611340 ACCGAAACGCCCTACTCTCT 60.611 55.000 0.00 0.00 0.00 3.10
185 186 0.458025 CACCGAAACGCCCTACTCTC 60.458 60.000 0.00 0.00 0.00 3.20
186 187 1.590147 CACCGAAACGCCCTACTCT 59.410 57.895 0.00 0.00 0.00 3.24
187 188 2.098831 GCACCGAAACGCCCTACTC 61.099 63.158 0.00 0.00 0.00 2.59
188 189 2.047560 GCACCGAAACGCCCTACT 60.048 61.111 0.00 0.00 0.00 2.57
189 190 3.122971 GGCACCGAAACGCCCTAC 61.123 66.667 0.00 0.00 42.82 3.18
204 205 4.575973 ATGCGGATGAGCCTGGGC 62.576 66.667 3.00 3.00 42.33 5.36
205 206 2.281345 GATGCGGATGAGCCTGGG 60.281 66.667 0.00 0.00 36.02 4.45
206 207 1.597302 CAGATGCGGATGAGCCTGG 60.597 63.158 0.00 0.00 36.02 4.45
207 208 1.597302 CCAGATGCGGATGAGCCTG 60.597 63.158 0.00 0.00 36.02 4.85
208 209 1.630126 AACCAGATGCGGATGAGCCT 61.630 55.000 0.00 0.00 36.02 4.58
209 210 0.106708 TAACCAGATGCGGATGAGCC 59.893 55.000 0.00 0.00 36.02 4.70
210 211 1.069204 TCTAACCAGATGCGGATGAGC 59.931 52.381 0.00 0.00 37.71 4.26
211 212 3.459232 TTCTAACCAGATGCGGATGAG 57.541 47.619 0.00 0.00 0.00 2.90
212 213 3.904800 TTTCTAACCAGATGCGGATGA 57.095 42.857 0.00 0.00 0.00 2.92
213 214 4.963276 TTTTTCTAACCAGATGCGGATG 57.037 40.909 0.00 0.00 0.00 3.51
261 262 9.904647 CGCACAATAAATATTTGGAATTTTCTG 57.095 29.630 11.05 0.72 0.00 3.02
262 263 9.651913 ACGCACAATAAATATTTGGAATTTTCT 57.348 25.926 11.05 0.00 0.00 2.52
277 278 8.431593 GCATCAAATTTTCTAACGCACAATAAA 58.568 29.630 0.00 0.00 0.00 1.40
278 279 7.201308 CGCATCAAATTTTCTAACGCACAATAA 60.201 33.333 0.00 0.00 0.00 1.40
279 280 6.250315 CGCATCAAATTTTCTAACGCACAATA 59.750 34.615 0.00 0.00 0.00 1.90
280 281 5.060816 CGCATCAAATTTTCTAACGCACAAT 59.939 36.000 0.00 0.00 0.00 2.71
281 282 4.381270 CGCATCAAATTTTCTAACGCACAA 59.619 37.500 0.00 0.00 0.00 3.33
282 283 3.911365 CGCATCAAATTTTCTAACGCACA 59.089 39.130 0.00 0.00 0.00 4.57
283 284 3.911964 ACGCATCAAATTTTCTAACGCAC 59.088 39.130 0.00 0.00 0.00 5.34
284 285 3.911365 CACGCATCAAATTTTCTAACGCA 59.089 39.130 0.00 0.00 0.00 5.24
285 286 4.155449 TCACGCATCAAATTTTCTAACGC 58.845 39.130 0.00 0.00 0.00 4.84
286 287 4.788100 CCTCACGCATCAAATTTTCTAACG 59.212 41.667 0.00 0.00 0.00 3.18
287 288 4.558860 GCCTCACGCATCAAATTTTCTAAC 59.441 41.667 0.00 0.00 37.47 2.34
288 289 4.380444 GGCCTCACGCATCAAATTTTCTAA 60.380 41.667 0.00 0.00 40.31 2.10
289 290 3.128589 GGCCTCACGCATCAAATTTTCTA 59.871 43.478 0.00 0.00 40.31 2.10
290 291 2.094545 GGCCTCACGCATCAAATTTTCT 60.095 45.455 0.00 0.00 40.31 2.52
291 292 2.262211 GGCCTCACGCATCAAATTTTC 58.738 47.619 0.00 0.00 40.31 2.29
292 293 1.066929 GGGCCTCACGCATCAAATTTT 60.067 47.619 0.84 0.00 40.31 1.82
293 294 0.532115 GGGCCTCACGCATCAAATTT 59.468 50.000 0.84 0.00 40.31 1.82
294 295 1.656818 CGGGCCTCACGCATCAAATT 61.657 55.000 0.84 0.00 40.31 1.82
295 296 2.114670 CGGGCCTCACGCATCAAAT 61.115 57.895 0.84 0.00 40.31 2.32
296 297 2.745884 CGGGCCTCACGCATCAAA 60.746 61.111 0.84 0.00 40.31 2.69
303 304 3.976701 ATTTGGAGCGGGCCTCACG 62.977 63.158 0.84 0.00 42.62 4.35
304 305 1.250840 AAATTTGGAGCGGGCCTCAC 61.251 55.000 0.84 0.00 42.62 3.51
305 306 0.965363 GAAATTTGGAGCGGGCCTCA 60.965 55.000 0.84 0.00 42.62 3.86
306 307 0.965363 TGAAATTTGGAGCGGGCCTC 60.965 55.000 0.84 0.00 39.98 4.70
307 308 0.541764 TTGAAATTTGGAGCGGGCCT 60.542 50.000 0.84 0.00 0.00 5.19
308 309 0.389817 GTTGAAATTTGGAGCGGGCC 60.390 55.000 0.00 0.00 0.00 5.80
309 310 0.603065 AGTTGAAATTTGGAGCGGGC 59.397 50.000 0.00 0.00 0.00 6.13
310 311 1.885887 TGAGTTGAAATTTGGAGCGGG 59.114 47.619 0.00 0.00 0.00 6.13
311 312 3.855689 ATGAGTTGAAATTTGGAGCGG 57.144 42.857 0.00 0.00 0.00 5.52
312 313 5.505165 CAAATGAGTTGAAATTTGGAGCG 57.495 39.130 0.00 0.00 39.87 5.03
328 329 6.370186 AGAGCTGCTCATATATCCAAATGA 57.630 37.500 29.49 0.00 32.06 2.57
329 330 6.665474 GAGAGCTGCTCATATATCCAAATG 57.335 41.667 29.49 0.00 43.38 2.32
357 358 3.828875 TTTGGCCCGATTTGTCTTTTT 57.171 38.095 0.00 0.00 0.00 1.94
358 359 3.828875 TTTTGGCCCGATTTGTCTTTT 57.171 38.095 0.00 0.00 0.00 2.27
359 360 4.526650 ACTATTTTGGCCCGATTTGTCTTT 59.473 37.500 0.00 0.00 0.00 2.52
360 361 4.086457 ACTATTTTGGCCCGATTTGTCTT 58.914 39.130 0.00 0.00 0.00 3.01
361 362 3.697166 ACTATTTTGGCCCGATTTGTCT 58.303 40.909 0.00 0.00 0.00 3.41
362 363 4.396790 TGTACTATTTTGGCCCGATTTGTC 59.603 41.667 0.00 0.00 0.00 3.18
363 364 4.337145 TGTACTATTTTGGCCCGATTTGT 58.663 39.130 0.00 0.00 0.00 2.83
364 365 4.974368 TGTACTATTTTGGCCCGATTTG 57.026 40.909 0.00 0.00 0.00 2.32
365 366 5.197451 TCATGTACTATTTTGGCCCGATTT 58.803 37.500 0.00 0.00 0.00 2.17
366 367 4.787551 TCATGTACTATTTTGGCCCGATT 58.212 39.130 0.00 0.00 0.00 3.34
367 368 4.431416 TCATGTACTATTTTGGCCCGAT 57.569 40.909 0.00 0.00 0.00 4.18
368 369 3.916359 TCATGTACTATTTTGGCCCGA 57.084 42.857 0.00 0.00 0.00 5.14
369 370 3.692101 TGTTCATGTACTATTTTGGCCCG 59.308 43.478 0.00 0.00 0.00 6.13
370 371 4.705023 ACTGTTCATGTACTATTTTGGCCC 59.295 41.667 0.00 0.00 0.00 5.80
371 372 5.897377 ACTGTTCATGTACTATTTTGGCC 57.103 39.130 0.00 0.00 0.00 5.36
372 373 8.512138 AGTTTACTGTTCATGTACTATTTTGGC 58.488 33.333 4.01 0.00 0.00 4.52
380 381 8.952278 TGTGAAAAAGTTTACTGTTCATGTACT 58.048 29.630 4.01 0.00 35.00 2.73
381 382 9.221775 CTGTGAAAAAGTTTACTGTTCATGTAC 57.778 33.333 10.62 0.00 35.00 2.90
382 383 9.168451 TCTGTGAAAAAGTTTACTGTTCATGTA 57.832 29.630 10.62 0.00 35.00 2.29
383 384 7.968405 GTCTGTGAAAAAGTTTACTGTTCATGT 59.032 33.333 10.62 0.00 35.00 3.21
384 385 7.432252 GGTCTGTGAAAAAGTTTACTGTTCATG 59.568 37.037 10.62 0.00 35.00 3.07
385 386 7.416326 GGGTCTGTGAAAAAGTTTACTGTTCAT 60.416 37.037 10.62 0.00 35.00 2.57
386 387 6.127842 GGGTCTGTGAAAAAGTTTACTGTTCA 60.128 38.462 5.58 5.58 32.00 3.18
387 388 6.095021 AGGGTCTGTGAAAAAGTTTACTGTTC 59.905 38.462 0.00 0.00 0.00 3.18
388 389 5.949952 AGGGTCTGTGAAAAAGTTTACTGTT 59.050 36.000 0.00 0.00 0.00 3.16
389 390 5.506708 AGGGTCTGTGAAAAAGTTTACTGT 58.493 37.500 0.00 0.00 0.00 3.55
390 391 5.588648 TGAGGGTCTGTGAAAAAGTTTACTG 59.411 40.000 0.00 0.00 0.00 2.74
391 392 5.751586 TGAGGGTCTGTGAAAAAGTTTACT 58.248 37.500 0.00 0.00 0.00 2.24
392 393 6.445357 TTGAGGGTCTGTGAAAAAGTTTAC 57.555 37.500 0.00 0.00 0.00 2.01
393 394 7.654022 AATTGAGGGTCTGTGAAAAAGTTTA 57.346 32.000 0.00 0.00 0.00 2.01
394 395 6.544928 AATTGAGGGTCTGTGAAAAAGTTT 57.455 33.333 0.00 0.00 0.00 2.66
395 396 6.070824 ACAAATTGAGGGTCTGTGAAAAAGTT 60.071 34.615 0.00 0.00 0.00 2.66
396 397 5.422012 ACAAATTGAGGGTCTGTGAAAAAGT 59.578 36.000 0.00 0.00 0.00 2.66
397 398 5.906073 ACAAATTGAGGGTCTGTGAAAAAG 58.094 37.500 0.00 0.00 0.00 2.27
398 399 5.656416 AGACAAATTGAGGGTCTGTGAAAAA 59.344 36.000 0.00 0.00 40.21 1.94
399 400 5.200483 AGACAAATTGAGGGTCTGTGAAAA 58.800 37.500 0.00 0.00 40.21 2.29
400 401 4.792068 AGACAAATTGAGGGTCTGTGAAA 58.208 39.130 0.00 0.00 40.21 2.69
401 402 4.437682 AGACAAATTGAGGGTCTGTGAA 57.562 40.909 0.00 0.00 40.21 3.18
402 403 4.437682 AAGACAAATTGAGGGTCTGTGA 57.562 40.909 0.00 0.00 40.80 3.58
403 404 5.520376 AAAAGACAAATTGAGGGTCTGTG 57.480 39.130 0.00 0.00 40.80 3.66
423 424 2.936919 TGAGGAGCTCTCAGCAAAAA 57.063 45.000 14.64 0.00 46.71 1.94
431 432 1.774110 TGGACATCTGAGGAGCTCTC 58.226 55.000 14.64 9.73 42.74 3.20
432 433 2.244486 TTGGACATCTGAGGAGCTCT 57.756 50.000 14.64 0.00 0.00 4.09
433 434 3.118482 TCATTTGGACATCTGAGGAGCTC 60.118 47.826 4.71 4.71 0.00 4.09
434 435 2.842496 TCATTTGGACATCTGAGGAGCT 59.158 45.455 0.00 0.00 0.00 4.09
435 436 3.272574 TCATTTGGACATCTGAGGAGC 57.727 47.619 0.00 0.00 0.00 4.70
436 437 7.870509 TTAAATCATTTGGACATCTGAGGAG 57.129 36.000 0.00 0.00 0.00 3.69
437 438 8.648698 TTTTAAATCATTTGGACATCTGAGGA 57.351 30.769 0.00 0.00 0.00 3.71
438 439 9.880157 ATTTTTAAATCATTTGGACATCTGAGG 57.120 29.630 0.00 0.00 0.00 3.86
445 446 8.494347 CGCTTCAATTTTTAAATCATTTGGACA 58.506 29.630 0.00 0.00 0.00 4.02
446 447 7.956943 CCGCTTCAATTTTTAAATCATTTGGAC 59.043 33.333 0.00 0.00 0.00 4.02
447 448 7.875041 TCCGCTTCAATTTTTAAATCATTTGGA 59.125 29.630 0.00 0.00 0.00 3.53
448 449 7.956943 GTCCGCTTCAATTTTTAAATCATTTGG 59.043 33.333 0.00 0.00 0.00 3.28
449 450 7.956943 GGTCCGCTTCAATTTTTAAATCATTTG 59.043 33.333 0.00 0.00 0.00 2.32
450 451 7.877612 AGGTCCGCTTCAATTTTTAAATCATTT 59.122 29.630 0.00 0.00 0.00 2.32
451 452 7.386059 AGGTCCGCTTCAATTTTTAAATCATT 58.614 30.769 0.00 0.00 0.00 2.57
452 453 6.935167 AGGTCCGCTTCAATTTTTAAATCAT 58.065 32.000 0.00 0.00 0.00 2.45
453 454 6.015856 TGAGGTCCGCTTCAATTTTTAAATCA 60.016 34.615 0.00 0.00 0.00 2.57
454 455 6.308041 GTGAGGTCCGCTTCAATTTTTAAATC 59.692 38.462 0.00 0.00 32.39 2.17
455 456 6.156519 GTGAGGTCCGCTTCAATTTTTAAAT 58.843 36.000 0.00 0.00 32.39 1.40
456 457 5.067936 TGTGAGGTCCGCTTCAATTTTTAAA 59.932 36.000 0.00 0.00 32.39 1.52
457 458 4.580995 TGTGAGGTCCGCTTCAATTTTTAA 59.419 37.500 0.00 0.00 32.39 1.52
458 459 4.023536 GTGTGAGGTCCGCTTCAATTTTTA 60.024 41.667 0.00 0.00 32.39 1.52
459 460 2.955660 TGTGAGGTCCGCTTCAATTTTT 59.044 40.909 0.00 0.00 32.39 1.94
460 461 2.293399 GTGTGAGGTCCGCTTCAATTTT 59.707 45.455 0.00 0.00 32.39 1.82
461 462 1.880027 GTGTGAGGTCCGCTTCAATTT 59.120 47.619 0.00 0.00 32.39 1.82
462 463 1.523758 GTGTGAGGTCCGCTTCAATT 58.476 50.000 0.00 0.00 32.39 2.32
463 464 0.670546 CGTGTGAGGTCCGCTTCAAT 60.671 55.000 0.00 0.00 32.39 2.57
464 465 1.300620 CGTGTGAGGTCCGCTTCAA 60.301 57.895 0.00 0.00 32.39 2.69
465 466 2.338620 CGTGTGAGGTCCGCTTCA 59.661 61.111 0.00 0.00 0.00 3.02
466 467 1.733399 GACGTGTGAGGTCCGCTTC 60.733 63.158 0.00 0.00 0.00 3.86
467 468 2.023414 TTGACGTGTGAGGTCCGCTT 62.023 55.000 0.00 0.00 32.42 4.68
468 469 2.023414 TTTGACGTGTGAGGTCCGCT 62.023 55.000 0.00 0.00 32.42 5.52
469 470 0.949105 ATTTGACGTGTGAGGTCCGC 60.949 55.000 0.00 0.00 32.42 5.54
470 471 1.194547 CAATTTGACGTGTGAGGTCCG 59.805 52.381 0.00 0.00 32.42 4.79
471 472 2.218603 ACAATTTGACGTGTGAGGTCC 58.781 47.619 2.79 0.00 32.42 4.46
472 473 5.063060 GGTATACAATTTGACGTGTGAGGTC 59.937 44.000 5.01 0.00 33.90 3.85
473 474 4.933400 GGTATACAATTTGACGTGTGAGGT 59.067 41.667 5.01 0.00 0.00 3.85
474 475 5.175859 AGGTATACAATTTGACGTGTGAGG 58.824 41.667 5.01 0.00 0.00 3.86
475 476 5.867174 TGAGGTATACAATTTGACGTGTGAG 59.133 40.000 5.01 0.00 0.00 3.51
476 477 5.636121 GTGAGGTATACAATTTGACGTGTGA 59.364 40.000 5.01 0.00 0.00 3.58
477 478 5.163893 GGTGAGGTATACAATTTGACGTGTG 60.164 44.000 5.01 0.00 0.00 3.82
478 479 4.933400 GGTGAGGTATACAATTTGACGTGT 59.067 41.667 5.01 0.00 0.00 4.49
479 480 4.932799 TGGTGAGGTATACAATTTGACGTG 59.067 41.667 5.01 0.00 0.00 4.49
480 481 5.155278 TGGTGAGGTATACAATTTGACGT 57.845 39.130 5.01 0.00 0.00 4.34
481 482 6.677781 AATGGTGAGGTATACAATTTGACG 57.322 37.500 5.01 0.00 0.00 4.35
482 483 7.826690 ACAAATGGTGAGGTATACAATTTGAC 58.173 34.615 19.34 0.00 45.72 3.18
483 484 8.415950 AACAAATGGTGAGGTATACAATTTGA 57.584 30.769 19.34 0.00 45.72 2.69
486 487 9.487790 CAAAAACAAATGGTGAGGTATACAATT 57.512 29.630 5.01 0.00 0.00 2.32
487 488 8.093927 CCAAAAACAAATGGTGAGGTATACAAT 58.906 33.333 5.01 0.00 31.84 2.71
488 489 7.287927 TCCAAAAACAAATGGTGAGGTATACAA 59.712 33.333 5.01 0.00 37.94 2.41
489 490 6.778069 TCCAAAAACAAATGGTGAGGTATACA 59.222 34.615 5.01 0.00 37.94 2.29
490 491 7.222000 TCCAAAAACAAATGGTGAGGTATAC 57.778 36.000 0.00 0.00 37.94 1.47
491 492 8.429237 AATCCAAAAACAAATGGTGAGGTATA 57.571 30.769 0.00 0.00 37.94 1.47
492 493 6.933514 ATCCAAAAACAAATGGTGAGGTAT 57.066 33.333 0.00 0.00 37.94 2.73
493 494 6.739331 AATCCAAAAACAAATGGTGAGGTA 57.261 33.333 0.00 0.00 37.94 3.08
494 495 5.628797 AATCCAAAAACAAATGGTGAGGT 57.371 34.783 0.00 0.00 37.94 3.85
495 496 6.940831 AAAATCCAAAAACAAATGGTGAGG 57.059 33.333 0.00 0.00 37.94 3.86
548 549 0.812014 TCTGCGTGCTGACGGAAAAA 60.812 50.000 0.00 0.00 46.04 1.94
549 550 0.602638 ATCTGCGTGCTGACGGAAAA 60.603 50.000 3.45 0.00 46.04 2.29
550 551 1.005037 ATCTGCGTGCTGACGGAAA 60.005 52.632 3.45 0.00 46.04 3.13
551 552 1.737735 CATCTGCGTGCTGACGGAA 60.738 57.895 3.45 0.00 46.04 4.30
552 553 2.125952 CATCTGCGTGCTGACGGA 60.126 61.111 3.45 0.00 46.20 4.69
553 554 2.125952 TCATCTGCGTGCTGACGG 60.126 61.111 3.45 0.50 46.20 4.79
558 559 2.202716 CGAGCTCATCTGCGTGCT 60.203 61.111 15.40 0.00 38.59 4.40
562 563 2.584418 CACCCGAGCTCATCTGCG 60.584 66.667 15.40 0.00 38.13 5.18
576 577 3.476552 TCCGAAAATCCATCTATGCACC 58.523 45.455 0.00 0.00 0.00 5.01
599 600 5.008331 GGAGATTTCGGTAGGTTCCTTTTT 58.992 41.667 0.00 0.00 0.00 1.94
633 634 7.282585 TCTTGATCTTGGAGAGTTCTTTTTCA 58.717 34.615 0.00 0.00 0.00 2.69
720 726 1.289109 GAGCGGTTTCTTGCGCTGTA 61.289 55.000 9.73 0.00 37.86 2.74
880 925 2.448705 CGTCACGCACACACACACA 61.449 57.895 0.00 0.00 0.00 3.72
881 926 2.319707 CGTCACGCACACACACAC 59.680 61.111 0.00 0.00 0.00 3.82
882 927 2.888051 CCGTCACGCACACACACA 60.888 61.111 0.00 0.00 0.00 3.72
883 928 2.583868 TCCGTCACGCACACACAC 60.584 61.111 0.00 0.00 0.00 3.82
884 929 2.566057 AAGTCCGTCACGCACACACA 62.566 55.000 0.00 0.00 0.00 3.72
885 930 1.426041 AAAGTCCGTCACGCACACAC 61.426 55.000 0.00 0.00 0.00 3.82
891 936 2.344025 AGGATAAAAAGTCCGTCACGC 58.656 47.619 0.00 0.00 40.76 5.34
892 937 5.501897 GCATTAGGATAAAAAGTCCGTCACG 60.502 44.000 0.00 0.00 40.76 4.35
895 940 4.025145 CGGCATTAGGATAAAAAGTCCGTC 60.025 45.833 0.00 0.00 40.76 4.79
896 941 3.875134 CGGCATTAGGATAAAAAGTCCGT 59.125 43.478 0.00 0.00 40.76 4.69
897 942 3.250040 CCGGCATTAGGATAAAAAGTCCG 59.750 47.826 0.00 0.00 40.76 4.79
900 945 2.616842 CGCCGGCATTAGGATAAAAAGT 59.383 45.455 28.98 0.00 0.00 2.66
901 946 2.031157 CCGCCGGCATTAGGATAAAAAG 60.031 50.000 28.98 4.03 0.00 2.27
902 947 1.950909 CCGCCGGCATTAGGATAAAAA 59.049 47.619 28.98 0.00 0.00 1.94
903 948 1.134037 ACCGCCGGCATTAGGATAAAA 60.134 47.619 28.98 0.00 0.00 1.52
904 949 0.470766 ACCGCCGGCATTAGGATAAA 59.529 50.000 28.98 0.00 0.00 1.40
905 950 0.250124 CACCGCCGGCATTAGGATAA 60.250 55.000 28.98 0.00 0.00 1.75
906 951 1.369692 CACCGCCGGCATTAGGATA 59.630 57.895 28.98 0.00 0.00 2.59
907 952 2.111043 CACCGCCGGCATTAGGAT 59.889 61.111 28.98 7.26 0.00 3.24
908 953 4.169696 CCACCGCCGGCATTAGGA 62.170 66.667 28.98 0.00 0.00 2.94
909 954 2.989055 CTACCACCGCCGGCATTAGG 62.989 65.000 28.98 23.25 0.00 2.69
910 955 1.594293 CTACCACCGCCGGCATTAG 60.594 63.158 28.98 14.66 0.00 1.73
911 956 2.502093 CTACCACCGCCGGCATTA 59.498 61.111 28.98 8.22 0.00 1.90
1159 1214 4.574599 TGACGTGAGATAGATCATGTGG 57.425 45.455 6.32 0.00 46.80 4.17
1305 1372 5.370679 TCAGGTCAGGTTAAAACAAGTACC 58.629 41.667 0.00 0.00 0.00 3.34
1431 1498 5.135330 CACAACATCAATCGATCTTATGCG 58.865 41.667 0.00 1.49 0.00 4.73
1500 1567 6.038492 CAGAGGGAGTACTAACTAGTAAGTGC 59.962 46.154 0.00 0.00 40.20 4.40
1639 1706 3.281727 TGTTGGGCTAGTGGATCAATC 57.718 47.619 0.00 0.00 0.00 2.67
1666 1733 5.220548 CGATCCTTGATGTCATGAGAAACAC 60.221 44.000 0.00 0.00 0.00 3.32
1742 1809 9.590451 TTTTTATGGTAGGTAATACAAGAGACG 57.410 33.333 0.00 0.00 35.96 4.18
1803 1870 1.611977 CGTCAGGTGTCAGGTTAGACA 59.388 52.381 0.00 0.00 45.64 3.41
1816 1883 1.000955 CCTGTTGCTAGTTCGTCAGGT 59.999 52.381 0.00 0.00 38.01 4.00
1857 1924 6.987403 AACCAGGAAAATAAGGTTGCTTAA 57.013 33.333 0.00 0.00 42.42 1.85
1885 1952 4.072131 GGGTGAGTAAAAAGTCATGCTCA 58.928 43.478 0.00 0.00 36.19 4.26
2007 2203 3.181500 TGCATGTGTAGCTACTAGTCACG 60.181 47.826 23.84 11.61 32.55 4.35
2154 2350 0.543174 AGACGGCTCCAGTTCCTTCT 60.543 55.000 0.00 0.00 0.00 2.85
2256 2452 7.833786 AGTTTGATCCTCTACGTACAACATAA 58.166 34.615 0.00 0.00 0.00 1.90
2606 8288 8.084073 ACAGTACTCGACTAGATAGACAGATAC 58.916 40.741 0.00 0.00 35.64 2.24
2623 8320 2.612672 TCGGATCAAGCTACAGTACTCG 59.387 50.000 0.00 0.00 0.00 4.18
2805 8531 2.398498 CACAGTTTGACGACAGGAGAG 58.602 52.381 0.00 0.00 0.00 3.20
2871 9276 6.759497 AAGTGAGTGCTAAATGAATAACCC 57.241 37.500 0.00 0.00 0.00 4.11
2955 9360 6.644592 TCAAATTTCATTTCTTTGTTAGGCGG 59.355 34.615 0.00 0.00 32.89 6.13
2983 9388 0.170561 CTGCAGAGATGCTGGTTTGC 59.829 55.000 8.42 0.00 45.03 3.68
2985 9390 3.261250 CCTGCAGAGATGCTGGTTT 57.739 52.632 17.39 0.00 45.22 3.27
3072 9479 3.352648 AGTGTAATTAAAGGCGTGGCAT 58.647 40.909 0.00 0.00 0.00 4.40
3099 9506 1.758862 CAAATCCTCTGGGGGCAAATC 59.241 52.381 0.00 0.00 35.33 2.17
3110 9517 2.419574 GCAAATGCATGGCAAATCCTCT 60.420 45.455 16.35 0.00 43.62 3.69
3111 9518 1.937899 GCAAATGCATGGCAAATCCTC 59.062 47.619 16.35 0.00 43.62 3.71
3153 9572 4.778415 CGTGGCCCGTCTCGTCAG 62.778 72.222 0.00 0.00 0.00 3.51
3187 9606 1.732259 CACGTAGATCAACACAAGGGC 59.268 52.381 0.00 0.00 0.00 5.19
3204 9623 1.576421 GTTTTGGCTGCCTCTCACG 59.424 57.895 21.03 0.00 0.00 4.35
3268 9687 4.988598 ACCTTCACCGCTGCCACG 62.989 66.667 0.00 0.00 0.00 4.94
3270 9689 3.555324 TCACCTTCACCGCTGCCA 61.555 61.111 0.00 0.00 0.00 4.92
3279 9698 2.303022 GTGGAGATTGAGGTCACCTTCA 59.697 50.000 0.00 0.00 31.76 3.02
3292 9711 1.154016 CGCTGTCGTCGTGGAGATT 60.154 57.895 0.00 0.00 0.00 2.40
3322 9741 0.034089 ATCTTACCAGGTTGCAGCCC 60.034 55.000 16.95 6.15 0.00 5.19
3351 9770 1.815421 CGGTCGAAGGAAGGGCATG 60.815 63.158 0.00 0.00 0.00 4.06
3369 9788 0.036858 GACCTTGGAGAGCAGGTGAC 60.037 60.000 0.00 0.00 43.94 3.67
3380 9799 1.420430 AGAGGAACAACGACCTTGGA 58.580 50.000 0.00 0.00 36.57 3.53
3423 9843 7.065923 GGTTCAGACTTATACTAAGGCAAAAGG 59.934 40.741 2.79 0.00 0.00 3.11
3439 9859 6.441088 AAATCTAGGAGTTGGTTCAGACTT 57.559 37.500 0.00 0.00 0.00 3.01
3465 9885 8.934825 CATTTGTTGATTAACTATGTTTTGGGG 58.065 33.333 1.75 0.00 37.68 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.