Multiple sequence alignment - TraesCS1D01G273800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G273800 chr1D 100.000 4631 0 0 1 4631 368282075 368277445 0.000000e+00 8552.0
1 TraesCS1D01G273800 chr1D 85.107 3129 263 114 837 3882 367918337 367915329 0.000000e+00 3009.0
2 TraesCS1D01G273800 chr1D 85.391 1369 165 21 841 2190 368126839 368125487 0.000000e+00 1387.0
3 TraesCS1D01G273800 chr1D 90.273 915 48 16 2738 3630 368117763 368116868 0.000000e+00 1158.0
4 TraesCS1D01G273800 chr1D 84.444 495 50 13 2174 2666 368118456 368117987 3.260000e-126 462.0
5 TraesCS1D01G273800 chr1A 92.198 3089 147 37 727 3794 467194357 467191342 0.000000e+00 4283.0
6 TraesCS1D01G273800 chr1B 90.000 1150 59 23 2738 3864 492329015 492327899 0.000000e+00 1435.0
7 TraesCS1D01G273800 chr1B 87.395 1190 133 13 718 1896 492331179 492329996 0.000000e+00 1351.0
8 TraesCS1D01G273800 chr1B 83.180 761 83 24 1914 2663 492329856 492329130 0.000000e+00 654.0
9 TraesCS1D01G273800 chr1B 83.333 78 10 2 3869 3946 174087302 174087228 8.310000e-08 69.4
10 TraesCS1D01G273800 chr1B 82.278 79 10 3 3882 3957 432607805 432607882 1.080000e-06 65.8
11 TraesCS1D01G273800 chr1B 100.000 29 0 0 1888 1916 492329990 492329962 2.000000e-03 54.7
12 TraesCS1D01G273800 chr7D 84.177 1106 84 37 1808 2836 521904049 521905140 0.000000e+00 989.0
13 TraesCS1D01G273800 chr7D 84.328 804 108 12 944 1738 521903253 521904047 0.000000e+00 771.0
14 TraesCS1D01G273800 chr7D 86.784 681 78 12 3956 4631 575239405 575240078 0.000000e+00 749.0
15 TraesCS1D01G273800 chr7D 86.804 682 75 12 3954 4631 522030345 522029675 0.000000e+00 747.0
16 TraesCS1D01G273800 chr7D 87.338 308 37 2 1 307 6764995 6765301 7.370000e-93 351.0
17 TraesCS1D01G273800 chr5A 85.270 964 89 23 1912 2836 549974104 549975053 0.000000e+00 944.0
18 TraesCS1D01G273800 chr5A 82.679 739 111 9 944 1669 549973368 549974102 1.400000e-179 640.0
19 TraesCS1D01G273800 chr3D 88.807 679 64 9 3954 4631 411606271 411606938 0.000000e+00 822.0
20 TraesCS1D01G273800 chr3D 86.039 308 34 7 1 307 589709284 589709583 5.780000e-84 322.0
21 TraesCS1D01G273800 chr3D 86.039 308 32 6 1 307 589665620 589665917 2.080000e-83 320.0
22 TraesCS1D01G273800 chr3D 85.570 298 35 6 1 295 615107083 615106791 5.820000e-79 305.0
23 TraesCS1D01G273800 chr3D 85.507 69 10 0 3882 3950 230713677 230713745 6.430000e-09 73.1
24 TraesCS1D01G273800 chr6D 87.500 680 73 12 3955 4631 413404230 413404900 0.000000e+00 774.0
25 TraesCS1D01G273800 chr6D 86.550 684 83 9 3954 4631 302154583 302155263 0.000000e+00 745.0
26 TraesCS1D01G273800 chr2B 87.116 683 76 10 3954 4631 607742963 607742288 0.000000e+00 763.0
27 TraesCS1D01G273800 chr2B 86.931 681 76 10 3954 4631 679308834 679308164 0.000000e+00 752.0
28 TraesCS1D01G273800 chr2B 85.417 192 24 4 1049 1237 753659367 753659557 3.660000e-46 196.0
29 TraesCS1D01G273800 chr2B 86.957 115 15 0 2804 2918 752854117 752854003 3.760000e-26 130.0
30 TraesCS1D01G273800 chr2A 86.823 683 81 8 3954 4631 752741988 752742666 0.000000e+00 754.0
31 TraesCS1D01G273800 chr2A 87.296 307 38 1 1 307 165547204 165547509 2.650000e-92 350.0
32 TraesCS1D01G273800 chr2A 77.033 492 97 13 1180 1664 747378099 747378581 7.640000e-68 268.0
33 TraesCS1D01G273800 chr2A 83.267 251 40 2 3296 3545 747382179 747382428 3.600000e-56 230.0
34 TraesCS1D01G273800 chr2A 81.295 139 26 0 2803 2941 196504550 196504688 3.790000e-21 113.0
35 TraesCS1D01G273800 chr7A 86.510 682 83 9 3954 4631 230980898 230980222 0.000000e+00 741.0
36 TraesCS1D01G273800 chr7A 91.608 286 24 0 367 652 101393627 101393342 3.360000e-106 396.0
37 TraesCS1D01G273800 chr7A 93.902 246 14 1 1 246 101407158 101406914 2.040000e-98 370.0
38 TraesCS1D01G273800 chr7A 91.603 131 8 1 244 371 101406654 101406524 1.320000e-40 178.0
39 TraesCS1D01G273800 chr3B 91.260 492 39 2 160 647 709486728 709486237 0.000000e+00 667.0
40 TraesCS1D01G273800 chr3B 84.211 76 10 2 3882 3955 475253743 475253668 6.430000e-09 73.1
41 TraesCS1D01G273800 chr6A 83.220 733 110 7 944 1669 93887318 93888044 0.000000e+00 660.0
42 TraesCS1D01G273800 chr6A 83.879 397 33 9 1912 2283 93888046 93888436 2.650000e-92 350.0
43 TraesCS1D01G273800 chr6A 93.878 98 6 0 2738 2835 93888522 93888619 1.040000e-31 148.0
44 TraesCS1D01G273800 chr2D 87.013 308 40 0 1 308 71921662 71921969 9.540000e-92 348.0
45 TraesCS1D01G273800 chr2D 86.039 308 34 7 1 307 19564331 19564032 5.780000e-84 322.0
46 TraesCS1D01G273800 chr2D 82.645 121 21 0 2803 2923 181261667 181261787 1.760000e-19 108.0
47 TraesCS1D01G273800 chr2D 83.750 80 8 5 3880 3956 194713957 194713880 2.310000e-08 71.3
48 TraesCS1D01G273800 chr7B 86.218 312 39 4 1 310 712790288 712790597 7.420000e-88 335.0
49 TraesCS1D01G273800 chr4A 87.372 293 35 2 1 293 139873994 139873704 7.420000e-88 335.0
50 TraesCS1D01G273800 chr4A 85.915 71 8 2 3882 3951 629309577 629309508 1.790000e-09 75.0
51 TraesCS1D01G273800 chr4B 85.993 307 42 1 2 307 480917844 480917538 1.240000e-85 327.0
52 TraesCS1D01G273800 chr4B 86.486 296 34 6 4 298 110284605 110284315 2.080000e-83 320.0
53 TraesCS1D01G273800 chrUn 83.465 127 21 0 2815 2941 322853239 322853113 8.140000e-23 119.0
54 TraesCS1D01G273800 chrUn 84.298 121 19 0 2803 2923 341785322 341785442 8.140000e-23 119.0
55 TraesCS1D01G273800 chr5D 86.957 69 9 0 3882 3950 558966909 558966841 1.380000e-10 78.7
56 TraesCS1D01G273800 chr5B 85.526 76 9 2 3882 3956 34582055 34581981 1.380000e-10 78.7
57 TraesCS1D01G273800 chr3A 86.957 69 9 0 3882 3950 177112391 177112459 1.380000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G273800 chr1D 368277445 368282075 4630 True 8552.000 8552 100.000000 1 4631 1 chr1D.!!$R3 4630
1 TraesCS1D01G273800 chr1D 367915329 367918337 3008 True 3009.000 3009 85.107000 837 3882 1 chr1D.!!$R1 3045
2 TraesCS1D01G273800 chr1D 368125487 368126839 1352 True 1387.000 1387 85.391000 841 2190 1 chr1D.!!$R2 1349
3 TraesCS1D01G273800 chr1D 368116868 368118456 1588 True 810.000 1158 87.358500 2174 3630 2 chr1D.!!$R4 1456
4 TraesCS1D01G273800 chr1A 467191342 467194357 3015 True 4283.000 4283 92.198000 727 3794 1 chr1A.!!$R1 3067
5 TraesCS1D01G273800 chr1B 492327899 492331179 3280 True 873.675 1435 90.143750 718 3864 4 chr1B.!!$R2 3146
6 TraesCS1D01G273800 chr7D 521903253 521905140 1887 False 880.000 989 84.252500 944 2836 2 chr7D.!!$F3 1892
7 TraesCS1D01G273800 chr7D 575239405 575240078 673 False 749.000 749 86.784000 3956 4631 1 chr7D.!!$F2 675
8 TraesCS1D01G273800 chr7D 522029675 522030345 670 True 747.000 747 86.804000 3954 4631 1 chr7D.!!$R1 677
9 TraesCS1D01G273800 chr5A 549973368 549975053 1685 False 792.000 944 83.974500 944 2836 2 chr5A.!!$F1 1892
10 TraesCS1D01G273800 chr3D 411606271 411606938 667 False 822.000 822 88.807000 3954 4631 1 chr3D.!!$F2 677
11 TraesCS1D01G273800 chr6D 413404230 413404900 670 False 774.000 774 87.500000 3955 4631 1 chr6D.!!$F2 676
12 TraesCS1D01G273800 chr6D 302154583 302155263 680 False 745.000 745 86.550000 3954 4631 1 chr6D.!!$F1 677
13 TraesCS1D01G273800 chr2B 607742288 607742963 675 True 763.000 763 87.116000 3954 4631 1 chr2B.!!$R1 677
14 TraesCS1D01G273800 chr2B 679308164 679308834 670 True 752.000 752 86.931000 3954 4631 1 chr2B.!!$R2 677
15 TraesCS1D01G273800 chr2A 752741988 752742666 678 False 754.000 754 86.823000 3954 4631 1 chr2A.!!$F3 677
16 TraesCS1D01G273800 chr2A 747378099 747382428 4329 False 249.000 268 80.150000 1180 3545 2 chr2A.!!$F4 2365
17 TraesCS1D01G273800 chr7A 230980222 230980898 676 True 741.000 741 86.510000 3954 4631 1 chr7A.!!$R2 677
18 TraesCS1D01G273800 chr7A 101406524 101407158 634 True 274.000 370 92.752500 1 371 2 chr7A.!!$R3 370
19 TraesCS1D01G273800 chr6A 93887318 93888619 1301 False 386.000 660 86.992333 944 2835 3 chr6A.!!$F1 1891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 985 0.032615 CAGGCCCCTGTACTCTCTCT 60.033 60.0 0.00 0.0 39.1 3.10 F
1978 3888 0.396435 ATCTTCGTTGTGGGTGCAGA 59.604 50.0 0.00 0.0 0.0 4.26 F
3140 5393 1.097547 GCTACGGCGTCCTGGTACTA 61.098 60.0 19.21 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 4286 1.761784 AGCCCTTAGAGTGCTCAGATG 59.238 52.381 1.82 0.0 0.00 2.90 R
3224 5477 0.037326 TCATGAGCAAGGTCGGTCAC 60.037 55.000 0.00 0.0 45.44 3.67 R
3975 6347 0.685097 TGGGCTACTGCTTCGTCTTT 59.315 50.000 0.00 0.0 39.59 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 5.295950 TGGGTCAAAACATAAAACATGCAG 58.704 37.500 0.00 0.00 0.00 4.41
143 144 1.896220 TTTCTGATGGGAGTGTGTGC 58.104 50.000 0.00 0.00 0.00 4.57
150 151 1.302033 GGGAGTGTGTGCTGTGGAG 60.302 63.158 0.00 0.00 0.00 3.86
173 174 9.169592 GGAGTGCAGGTTAATTTATACAAAGTA 57.830 33.333 0.00 0.00 0.00 2.24
179 180 8.403236 CAGGTTAATTTATACAAAGTACAGGGC 58.597 37.037 0.00 0.00 0.00 5.19
257 258 6.367374 TTTTTATCCAAGGGTCCAAAATCC 57.633 37.500 0.00 0.00 0.00 3.01
258 259 4.683766 TTATCCAAGGGTCCAAAATCCA 57.316 40.909 0.00 0.00 0.00 3.41
259 260 2.302587 TCCAAGGGTCCAAAATCCAC 57.697 50.000 0.00 0.00 0.00 4.02
260 261 1.203125 TCCAAGGGTCCAAAATCCACC 60.203 52.381 0.00 0.00 0.00 4.61
261 262 0.887933 CAAGGGTCCAAAATCCACCG 59.112 55.000 0.00 0.00 0.00 4.94
262 263 0.251608 AAGGGTCCAAAATCCACCGG 60.252 55.000 0.00 0.00 0.00 5.28
263 264 1.076014 GGGTCCAAAATCCACCGGT 59.924 57.895 0.00 0.00 0.00 5.28
264 265 1.248101 GGGTCCAAAATCCACCGGTG 61.248 60.000 28.26 28.26 0.00 4.94
265 266 1.584495 GTCCAAAATCCACCGGTGC 59.416 57.895 29.75 8.23 0.00 5.01
267 268 0.251564 TCCAAAATCCACCGGTGCAT 60.252 50.000 29.75 18.66 0.00 3.96
269 270 1.672441 CCAAAATCCACCGGTGCATTG 60.672 52.381 29.75 25.14 0.00 2.82
271 272 0.251564 AAATCCACCGGTGCATTGGA 60.252 50.000 29.75 20.78 43.60 3.53
272 273 1.614711 ATCCACCGGTGCATTGGAT 59.385 52.632 29.75 22.12 43.47 3.41
290 291 4.557942 GCACAAATTGCCTCGGTG 57.442 55.556 0.00 0.00 46.63 4.94
291 292 1.734117 GCACAAATTGCCTCGGTGC 60.734 57.895 0.00 0.00 46.63 5.01
294 295 1.106351 ACAAATTGCCTCGGTGCACA 61.106 50.000 20.43 0.00 41.88 4.57
295 296 0.244450 CAAATTGCCTCGGTGCACAT 59.756 50.000 20.43 0.00 41.88 3.21
296 297 0.244450 AAATTGCCTCGGTGCACATG 59.756 50.000 20.43 10.71 41.88 3.21
297 298 1.597797 AATTGCCTCGGTGCACATGG 61.598 55.000 20.43 17.21 41.88 3.66
315 316 1.001641 GCACATTCTCTGGTGGCCT 60.002 57.895 3.32 0.00 35.58 5.19
316 317 1.310933 GCACATTCTCTGGTGGCCTG 61.311 60.000 3.32 0.00 35.58 4.85
317 318 1.001641 ACATTCTCTGGTGGCCTGC 60.002 57.895 3.32 0.00 0.00 4.85
318 319 2.110967 CATTCTCTGGTGGCCTGCG 61.111 63.158 3.32 0.00 0.00 5.18
333 334 3.407657 GCGGCAAGCTGAGAGATG 58.592 61.111 4.81 0.00 44.04 2.90
334 335 2.178890 GCGGCAAGCTGAGAGATGG 61.179 63.158 4.81 0.00 44.04 3.51
335 336 1.519246 CGGCAAGCTGAGAGATGGA 59.481 57.895 0.00 0.00 0.00 3.41
336 337 0.530211 CGGCAAGCTGAGAGATGGAG 60.530 60.000 0.00 0.00 0.00 3.86
337 338 0.829333 GGCAAGCTGAGAGATGGAGA 59.171 55.000 0.00 0.00 0.00 3.71
338 339 1.473080 GGCAAGCTGAGAGATGGAGAC 60.473 57.143 0.00 0.00 0.00 3.36
339 340 1.473080 GCAAGCTGAGAGATGGAGACC 60.473 57.143 0.00 0.00 0.00 3.85
340 341 2.109774 CAAGCTGAGAGATGGAGACCT 58.890 52.381 0.00 0.00 0.00 3.85
341 342 1.779221 AGCTGAGAGATGGAGACCTG 58.221 55.000 0.00 0.00 0.00 4.00
342 343 0.752054 GCTGAGAGATGGAGACCTGG 59.248 60.000 0.00 0.00 0.00 4.45
343 344 1.412079 CTGAGAGATGGAGACCTGGG 58.588 60.000 0.00 0.00 0.00 4.45
344 345 1.010795 TGAGAGATGGAGACCTGGGA 58.989 55.000 0.00 0.00 0.00 4.37
346 347 2.038659 GAGAGATGGAGACCTGGGAAG 58.961 57.143 0.00 0.00 0.00 3.46
347 348 1.648568 AGAGATGGAGACCTGGGAAGA 59.351 52.381 0.00 0.00 0.00 2.87
349 350 3.044894 GAGATGGAGACCTGGGAAGAAT 58.955 50.000 0.00 0.00 0.00 2.40
351 352 1.289160 TGGAGACCTGGGAAGAATGG 58.711 55.000 0.00 0.00 0.00 3.16
353 354 1.636003 GGAGACCTGGGAAGAATGGTT 59.364 52.381 0.00 0.00 32.30 3.67
354 355 2.356227 GGAGACCTGGGAAGAATGGTTC 60.356 54.545 0.00 0.00 32.30 3.62
355 356 1.279271 AGACCTGGGAAGAATGGTTCG 59.721 52.381 0.00 0.00 32.30 3.95
356 357 1.003233 GACCTGGGAAGAATGGTTCGT 59.997 52.381 0.00 0.00 32.30 3.85
357 358 1.003233 ACCTGGGAAGAATGGTTCGTC 59.997 52.381 0.00 0.00 37.43 4.20
358 359 1.359848 CTGGGAAGAATGGTTCGTCG 58.640 55.000 0.00 0.00 38.77 5.12
359 360 0.036765 TGGGAAGAATGGTTCGTCGG 60.037 55.000 0.00 0.00 38.77 4.79
363 364 1.062587 GAAGAATGGTTCGTCGGCATG 59.937 52.381 0.00 0.00 34.02 4.06
365 366 0.652592 GAATGGTTCGTCGGCATGAG 59.347 55.000 0.00 0.00 0.00 2.90
366 367 1.369091 AATGGTTCGTCGGCATGAGC 61.369 55.000 0.00 0.00 41.10 4.26
367 368 2.434185 GGTTCGTCGGCATGAGCA 60.434 61.111 0.00 0.00 44.61 4.26
368 369 1.815421 GGTTCGTCGGCATGAGCAT 60.815 57.895 0.00 0.00 44.61 3.79
371 372 1.663643 GTTCGTCGGCATGAGCATTTA 59.336 47.619 0.00 0.00 44.61 1.40
372 373 2.238942 TCGTCGGCATGAGCATTTAT 57.761 45.000 0.00 0.00 44.61 1.40
375 376 3.740832 TCGTCGGCATGAGCATTTATAAG 59.259 43.478 0.00 0.00 44.61 1.73
376 377 3.665323 CGTCGGCATGAGCATTTATAAGC 60.665 47.826 0.00 0.00 44.61 3.09
377 378 2.813754 TCGGCATGAGCATTTATAAGCC 59.186 45.455 0.00 0.00 44.61 4.35
378 379 2.553602 CGGCATGAGCATTTATAAGCCA 59.446 45.455 0.00 1.44 44.61 4.75
379 380 3.365666 CGGCATGAGCATTTATAAGCCAG 60.366 47.826 0.00 0.00 44.61 4.85
380 381 3.572584 GCATGAGCATTTATAAGCCAGC 58.427 45.455 0.00 0.00 41.58 4.85
381 382 3.613432 GCATGAGCATTTATAAGCCAGCC 60.613 47.826 0.00 0.00 41.58 4.85
382 383 3.295585 TGAGCATTTATAAGCCAGCCA 57.704 42.857 0.00 0.00 0.00 4.75
383 384 3.216800 TGAGCATTTATAAGCCAGCCAG 58.783 45.455 0.00 0.00 0.00 4.85
384 385 1.959282 AGCATTTATAAGCCAGCCAGC 59.041 47.619 0.00 0.00 0.00 4.85
386 387 3.149196 GCATTTATAAGCCAGCCAGCTA 58.851 45.455 0.00 0.00 44.11 3.32
387 388 3.760684 GCATTTATAAGCCAGCCAGCTAT 59.239 43.478 0.00 0.00 44.11 2.97
388 389 4.219288 GCATTTATAAGCCAGCCAGCTATT 59.781 41.667 0.00 0.00 44.11 1.73
389 390 5.279156 GCATTTATAAGCCAGCCAGCTATTT 60.279 40.000 0.00 0.00 44.11 1.40
390 391 5.772825 TTTATAAGCCAGCCAGCTATTTG 57.227 39.130 0.00 0.00 44.11 2.32
391 392 3.582998 ATAAGCCAGCCAGCTATTTGA 57.417 42.857 0.00 0.00 44.11 2.69
392 393 2.220653 AAGCCAGCCAGCTATTTGAA 57.779 45.000 0.00 0.00 44.11 2.69
393 394 2.220653 AGCCAGCCAGCTATTTGAAA 57.779 45.000 0.00 0.00 42.70 2.69
394 395 2.528564 AGCCAGCCAGCTATTTGAAAA 58.471 42.857 0.00 0.00 42.70 2.29
395 396 3.102204 AGCCAGCCAGCTATTTGAAAAT 58.898 40.909 0.00 0.00 42.70 1.82
396 397 4.280819 AGCCAGCCAGCTATTTGAAAATA 58.719 39.130 0.00 0.00 42.70 1.40
397 398 4.098501 AGCCAGCCAGCTATTTGAAAATAC 59.901 41.667 0.00 0.00 42.70 1.89
398 399 4.142182 GCCAGCCAGCTATTTGAAAATACA 60.142 41.667 0.00 0.00 0.00 2.29
399 400 5.624281 GCCAGCCAGCTATTTGAAAATACAA 60.624 40.000 0.00 0.00 0.00 2.41
400 401 5.807011 CCAGCCAGCTATTTGAAAATACAAC 59.193 40.000 0.00 0.00 0.00 3.32
401 402 5.512788 CAGCCAGCTATTTGAAAATACAACG 59.487 40.000 0.00 0.00 0.00 4.10
402 403 5.414454 AGCCAGCTATTTGAAAATACAACGA 59.586 36.000 0.00 0.00 0.00 3.85
403 404 5.739161 GCCAGCTATTTGAAAATACAACGAG 59.261 40.000 0.00 0.00 0.00 4.18
404 405 6.258160 CCAGCTATTTGAAAATACAACGAGG 58.742 40.000 0.00 0.00 0.00 4.63
405 406 6.093495 CCAGCTATTTGAAAATACAACGAGGA 59.907 38.462 0.00 0.00 0.00 3.71
406 407 7.182761 CAGCTATTTGAAAATACAACGAGGAG 58.817 38.462 0.00 0.00 0.00 3.69
407 408 5.965918 GCTATTTGAAAATACAACGAGGAGC 59.034 40.000 0.00 0.00 0.00 4.70
408 409 6.183360 GCTATTTGAAAATACAACGAGGAGCT 60.183 38.462 0.00 0.00 0.00 4.09
409 410 5.356882 TTTGAAAATACAACGAGGAGCTG 57.643 39.130 0.00 0.00 0.00 4.24
410 411 4.002906 TGAAAATACAACGAGGAGCTGT 57.997 40.909 0.00 0.00 0.00 4.40
411 412 3.994392 TGAAAATACAACGAGGAGCTGTC 59.006 43.478 0.00 0.00 0.00 3.51
412 413 2.674796 AATACAACGAGGAGCTGTCC 57.325 50.000 0.00 0.00 44.33 4.02
424 425 2.202851 CTGTCCTGCAGCTAGCCG 60.203 66.667 12.13 1.20 44.83 5.52
425 426 2.997315 TGTCCTGCAGCTAGCCGT 60.997 61.111 12.13 0.00 44.83 5.68
426 427 2.266055 GTCCTGCAGCTAGCCGTT 59.734 61.111 12.13 0.00 44.83 4.44
427 428 2.103042 GTCCTGCAGCTAGCCGTTG 61.103 63.158 12.13 4.41 44.83 4.10
428 429 2.821366 CCTGCAGCTAGCCGTTGG 60.821 66.667 12.13 5.56 44.83 3.77
429 430 2.821366 CTGCAGCTAGCCGTTGGG 60.821 66.667 12.13 0.00 44.83 4.12
430 431 4.408821 TGCAGCTAGCCGTTGGGG 62.409 66.667 12.13 0.00 44.83 4.96
441 442 3.909651 GTTGGGGCTGGGTTGGGA 61.910 66.667 0.00 0.00 0.00 4.37
442 443 3.589542 TTGGGGCTGGGTTGGGAG 61.590 66.667 0.00 0.00 0.00 4.30
465 466 3.093278 CGAGGCTCGGTTGAATGC 58.907 61.111 28.52 0.00 36.00 3.56
466 467 2.464459 CGAGGCTCGGTTGAATGCC 61.464 63.158 28.52 0.00 45.21 4.40
467 468 2.044946 AGGCTCGGTTGAATGCCC 60.045 61.111 0.00 0.00 45.94 5.36
468 469 2.361104 GGCTCGGTTGAATGCCCA 60.361 61.111 0.00 0.00 39.49 5.36
469 470 2.409870 GGCTCGGTTGAATGCCCAG 61.410 63.158 0.00 0.00 39.49 4.45
470 471 1.377202 GCTCGGTTGAATGCCCAGA 60.377 57.895 0.00 0.00 0.00 3.86
471 472 1.372087 GCTCGGTTGAATGCCCAGAG 61.372 60.000 0.00 0.00 0.00 3.35
472 473 1.372087 CTCGGTTGAATGCCCAGAGC 61.372 60.000 0.00 0.00 44.14 4.09
473 474 1.377725 CGGTTGAATGCCCAGAGCT 60.378 57.895 0.00 0.00 44.23 4.09
474 475 1.651240 CGGTTGAATGCCCAGAGCTG 61.651 60.000 0.00 0.00 44.23 4.24
475 476 1.509923 GTTGAATGCCCAGAGCTGC 59.490 57.895 0.00 0.00 44.23 5.25
476 477 1.679977 TTGAATGCCCAGAGCTGCC 60.680 57.895 0.00 0.00 44.23 4.85
477 478 2.146146 TTGAATGCCCAGAGCTGCCT 62.146 55.000 0.00 0.00 44.23 4.75
478 479 1.379576 GAATGCCCAGAGCTGCCTT 60.380 57.895 0.00 0.00 44.23 4.35
479 480 1.664321 GAATGCCCAGAGCTGCCTTG 61.664 60.000 0.00 0.00 44.23 3.61
492 493 2.357836 CCTTGCAGGCCAGGTGAT 59.642 61.111 5.01 0.00 0.00 3.06
493 494 1.609239 CCTTGCAGGCCAGGTGATA 59.391 57.895 5.01 0.00 0.00 2.15
494 495 0.749454 CCTTGCAGGCCAGGTGATAC 60.749 60.000 5.01 0.00 0.00 2.24
495 496 1.078497 TTGCAGGCCAGGTGATACG 60.078 57.895 5.01 0.00 0.00 3.06
496 497 2.897350 GCAGGCCAGGTGATACGC 60.897 66.667 5.01 0.00 0.00 4.42
497 498 2.584064 CAGGCCAGGTGATACGCA 59.416 61.111 5.01 0.00 0.00 5.24
498 499 1.146930 CAGGCCAGGTGATACGCAT 59.853 57.895 5.01 0.00 0.00 4.73
499 500 1.146930 AGGCCAGGTGATACGCATG 59.853 57.895 5.01 0.00 0.00 4.06
500 501 1.153168 GGCCAGGTGATACGCATGT 60.153 57.895 0.00 0.00 0.00 3.21
501 502 1.160329 GGCCAGGTGATACGCATGTC 61.160 60.000 0.00 0.00 0.00 3.06
502 503 0.461870 GCCAGGTGATACGCATGTCA 60.462 55.000 0.00 0.00 0.00 3.58
503 504 1.575244 CCAGGTGATACGCATGTCAG 58.425 55.000 0.00 0.00 0.00 3.51
504 505 1.575244 CAGGTGATACGCATGTCAGG 58.425 55.000 0.00 0.00 0.00 3.86
505 506 1.134699 CAGGTGATACGCATGTCAGGT 60.135 52.381 0.00 0.00 0.00 4.00
506 507 1.555075 AGGTGATACGCATGTCAGGTT 59.445 47.619 0.00 0.00 0.00 3.50
507 508 1.933853 GGTGATACGCATGTCAGGTTC 59.066 52.381 0.00 0.00 0.00 3.62
508 509 1.588404 GTGATACGCATGTCAGGTTCG 59.412 52.381 0.00 0.00 0.00 3.95
509 510 0.577269 GATACGCATGTCAGGTTCGC 59.423 55.000 0.00 0.00 0.00 4.70
510 511 0.108377 ATACGCATGTCAGGTTCGCA 60.108 50.000 0.00 0.00 0.00 5.10
511 512 0.319986 TACGCATGTCAGGTTCGCAA 60.320 50.000 0.00 0.00 0.00 4.85
512 513 1.163420 ACGCATGTCAGGTTCGCAAA 61.163 50.000 0.00 0.00 0.00 3.68
513 514 0.168788 CGCATGTCAGGTTCGCAAAT 59.831 50.000 0.00 0.00 0.00 2.32
514 515 1.396648 CGCATGTCAGGTTCGCAAATA 59.603 47.619 0.00 0.00 0.00 1.40
515 516 2.785679 GCATGTCAGGTTCGCAAATAC 58.214 47.619 0.00 0.00 0.00 1.89
516 517 2.787723 GCATGTCAGGTTCGCAAATACG 60.788 50.000 0.00 0.00 0.00 3.06
517 518 0.793861 TGTCAGGTTCGCAAATACGC 59.206 50.000 0.00 0.00 0.00 4.42
527 528 1.504359 GCAAATACGCGCCTATACCA 58.496 50.000 5.73 0.00 0.00 3.25
528 529 1.868498 GCAAATACGCGCCTATACCAA 59.132 47.619 5.73 0.00 0.00 3.67
529 530 2.349155 GCAAATACGCGCCTATACCAAC 60.349 50.000 5.73 0.00 0.00 3.77
530 531 3.128349 CAAATACGCGCCTATACCAACT 58.872 45.455 5.73 0.00 0.00 3.16
531 532 2.433868 ATACGCGCCTATACCAACTG 57.566 50.000 5.73 0.00 0.00 3.16
532 533 1.105457 TACGCGCCTATACCAACTGT 58.895 50.000 5.73 0.00 0.00 3.55
533 534 0.459585 ACGCGCCTATACCAACTGTG 60.460 55.000 5.73 0.00 0.00 3.66
534 535 0.179121 CGCGCCTATACCAACTGTGA 60.179 55.000 0.00 0.00 0.00 3.58
535 536 1.538204 CGCGCCTATACCAACTGTGAT 60.538 52.381 0.00 0.00 0.00 3.06
536 537 2.287970 CGCGCCTATACCAACTGTGATA 60.288 50.000 0.00 0.00 0.00 2.15
537 538 3.057734 GCGCCTATACCAACTGTGATAC 58.942 50.000 0.00 0.00 0.00 2.24
538 539 3.491964 GCGCCTATACCAACTGTGATACA 60.492 47.826 0.00 0.00 0.00 2.29
549 550 3.652057 CTGTGATACAGGGGTTGGAAT 57.348 47.619 1.08 0.00 42.35 3.01
550 551 3.968265 CTGTGATACAGGGGTTGGAATT 58.032 45.455 1.08 0.00 42.35 2.17
551 552 5.110814 CTGTGATACAGGGGTTGGAATTA 57.889 43.478 1.08 0.00 42.35 1.40
552 553 5.505780 CTGTGATACAGGGGTTGGAATTAA 58.494 41.667 1.08 0.00 42.35 1.40
553 554 6.086011 TGTGATACAGGGGTTGGAATTAAT 57.914 37.500 0.00 0.00 0.00 1.40
554 555 6.498538 TGTGATACAGGGGTTGGAATTAATT 58.501 36.000 0.00 0.00 0.00 1.40
555 556 7.644062 TGTGATACAGGGGTTGGAATTAATTA 58.356 34.615 0.00 0.00 0.00 1.40
556 557 8.285891 TGTGATACAGGGGTTGGAATTAATTAT 58.714 33.333 0.00 0.00 0.00 1.28
557 558 9.802039 GTGATACAGGGGTTGGAATTAATTATA 57.198 33.333 0.00 0.00 0.00 0.98
558 559 9.802039 TGATACAGGGGTTGGAATTAATTATAC 57.198 33.333 0.00 0.06 0.00 1.47
559 560 8.857694 ATACAGGGGTTGGAATTAATTATACG 57.142 34.615 0.00 0.00 0.00 3.06
560 561 6.066032 ACAGGGGTTGGAATTAATTATACGG 58.934 40.000 0.00 0.00 0.00 4.02
561 562 5.048294 CAGGGGTTGGAATTAATTATACGGC 60.048 44.000 0.00 0.00 0.00 5.68
562 563 5.074804 GGGGTTGGAATTAATTATACGGCT 58.925 41.667 0.00 0.00 0.00 5.52
563 564 6.044637 AGGGGTTGGAATTAATTATACGGCTA 59.955 38.462 0.00 0.00 0.00 3.93
564 565 6.373495 GGGGTTGGAATTAATTATACGGCTAG 59.627 42.308 0.00 0.00 0.00 3.42
565 566 6.128090 GGGTTGGAATTAATTATACGGCTAGC 60.128 42.308 6.04 6.04 0.00 3.42
566 567 6.401796 GGTTGGAATTAATTATACGGCTAGCG 60.402 42.308 9.00 6.83 0.00 4.26
567 568 5.786311 TGGAATTAATTATACGGCTAGCGT 58.214 37.500 9.00 12.55 0.00 5.07
568 569 5.636121 TGGAATTAATTATACGGCTAGCGTG 59.364 40.000 18.37 12.11 0.00 5.34
569 570 5.636543 GGAATTAATTATACGGCTAGCGTGT 59.363 40.000 18.37 16.58 0.00 4.49
570 571 6.808212 GGAATTAATTATACGGCTAGCGTGTA 59.192 38.462 17.51 17.51 0.00 2.90
571 572 7.490402 GGAATTAATTATACGGCTAGCGTGTAT 59.510 37.037 25.33 25.33 33.62 2.29
572 573 8.767478 AATTAATTATACGGCTAGCGTGTATT 57.233 30.769 26.48 17.57 31.63 1.89
573 574 7.571089 TTAATTATACGGCTAGCGTGTATTG 57.429 36.000 26.48 8.00 31.63 1.90
574 575 4.834357 TTATACGGCTAGCGTGTATTGA 57.166 40.909 26.48 17.18 31.63 2.57
575 576 3.720949 ATACGGCTAGCGTGTATTGAA 57.279 42.857 19.81 3.77 0.00 2.69
576 577 1.922570 ACGGCTAGCGTGTATTGAAG 58.077 50.000 9.00 0.00 0.00 3.02
577 578 1.203994 ACGGCTAGCGTGTATTGAAGT 59.796 47.619 9.00 0.00 0.00 3.01
578 579 2.268298 CGGCTAGCGTGTATTGAAGTT 58.732 47.619 9.00 0.00 0.00 2.66
579 580 2.029244 CGGCTAGCGTGTATTGAAGTTG 59.971 50.000 9.00 0.00 0.00 3.16
580 581 2.223044 GGCTAGCGTGTATTGAAGTTGC 60.223 50.000 9.00 0.00 0.00 4.17
581 582 2.415168 GCTAGCGTGTATTGAAGTTGCA 59.585 45.455 0.00 0.00 0.00 4.08
582 583 2.969443 AGCGTGTATTGAAGTTGCAC 57.031 45.000 0.00 0.00 0.00 4.57
588 589 4.081761 GTGTATTGAAGTTGCACGAATCG 58.918 43.478 0.00 0.00 0.00 3.34
589 590 2.247311 ATTGAAGTTGCACGAATCGC 57.753 45.000 1.15 0.00 0.00 4.58
600 601 3.508840 GAATCGCGTGGGGGCAAG 61.509 66.667 5.77 0.00 0.00 4.01
610 611 4.740822 GGGGCAAGCGGTGTGGAT 62.741 66.667 0.00 0.00 0.00 3.41
611 612 2.270850 GGGCAAGCGGTGTGGATA 59.729 61.111 0.00 0.00 0.00 2.59
612 613 1.152963 GGGCAAGCGGTGTGGATAT 60.153 57.895 0.00 0.00 0.00 1.63
613 614 1.166531 GGGCAAGCGGTGTGGATATC 61.167 60.000 0.00 0.00 0.00 1.63
614 615 0.463654 GGCAAGCGGTGTGGATATCA 60.464 55.000 4.83 0.00 0.00 2.15
615 616 1.378531 GCAAGCGGTGTGGATATCAA 58.621 50.000 4.83 0.00 0.00 2.57
616 617 1.064060 GCAAGCGGTGTGGATATCAAC 59.936 52.381 2.99 2.99 0.00 3.18
617 618 1.670811 CAAGCGGTGTGGATATCAACC 59.329 52.381 7.81 9.15 0.00 3.77
618 619 0.179084 AGCGGTGTGGATATCAACCG 60.179 55.000 26.94 26.94 42.86 4.44
619 620 2.307363 CGGTGTGGATATCAACCGC 58.693 57.895 22.82 10.71 38.27 5.68
620 621 1.487452 CGGTGTGGATATCAACCGCG 61.487 60.000 22.82 0.00 40.35 6.46
621 622 1.641677 GTGTGGATATCAACCGCGC 59.358 57.895 7.81 0.00 40.35 6.86
622 623 1.880796 TGTGGATATCAACCGCGCG 60.881 57.895 25.67 25.67 40.35 6.86
623 624 1.881252 GTGGATATCAACCGCGCGT 60.881 57.895 29.95 14.24 0.00 6.01
624 625 0.595567 GTGGATATCAACCGCGCGTA 60.596 55.000 29.95 14.55 0.00 4.42
625 626 0.318360 TGGATATCAACCGCGCGTAG 60.318 55.000 29.95 17.12 0.00 3.51
638 639 4.919653 CGTAGCTGCATGTCCACT 57.080 55.556 1.02 0.00 0.00 4.00
639 640 2.670635 CGTAGCTGCATGTCCACTC 58.329 57.895 1.02 0.00 0.00 3.51
640 641 0.108662 CGTAGCTGCATGTCCACTCA 60.109 55.000 1.02 0.00 0.00 3.41
641 642 1.363744 GTAGCTGCATGTCCACTCAC 58.636 55.000 1.02 0.00 0.00 3.51
642 643 0.108662 TAGCTGCATGTCCACTCACG 60.109 55.000 1.02 0.00 0.00 4.35
643 644 1.374631 GCTGCATGTCCACTCACGA 60.375 57.895 0.00 0.00 0.00 4.35
644 645 0.742281 GCTGCATGTCCACTCACGAT 60.742 55.000 0.00 0.00 0.00 3.73
645 646 1.730501 CTGCATGTCCACTCACGATT 58.269 50.000 0.00 0.00 0.00 3.34
646 647 2.892374 CTGCATGTCCACTCACGATTA 58.108 47.619 0.00 0.00 0.00 1.75
647 648 2.604914 CTGCATGTCCACTCACGATTAC 59.395 50.000 0.00 0.00 0.00 1.89
648 649 2.233676 TGCATGTCCACTCACGATTACT 59.766 45.455 0.00 0.00 0.00 2.24
649 650 2.860735 GCATGTCCACTCACGATTACTC 59.139 50.000 0.00 0.00 0.00 2.59
663 664 5.054780 CGATTACTCGTTCTTGTACATGC 57.945 43.478 0.00 0.00 40.07 4.06
664 665 4.798907 CGATTACTCGTTCTTGTACATGCT 59.201 41.667 0.00 0.00 40.07 3.79
665 666 5.288712 CGATTACTCGTTCTTGTACATGCTT 59.711 40.000 0.00 0.00 40.07 3.91
666 667 6.183360 CGATTACTCGTTCTTGTACATGCTTT 60.183 38.462 0.00 0.00 40.07 3.51
667 668 4.992381 ACTCGTTCTTGTACATGCTTTC 57.008 40.909 0.00 0.00 0.00 2.62
668 669 4.632153 ACTCGTTCTTGTACATGCTTTCT 58.368 39.130 0.00 0.00 0.00 2.52
669 670 4.449068 ACTCGTTCTTGTACATGCTTTCTG 59.551 41.667 0.00 0.00 0.00 3.02
670 671 3.186409 TCGTTCTTGTACATGCTTTCTGC 59.814 43.478 0.00 0.00 43.25 4.26
671 672 3.667960 CGTTCTTGTACATGCTTTCTGCC 60.668 47.826 0.00 0.00 42.00 4.85
672 673 3.423539 TCTTGTACATGCTTTCTGCCT 57.576 42.857 0.00 0.00 42.00 4.75
673 674 3.754965 TCTTGTACATGCTTTCTGCCTT 58.245 40.909 0.00 0.00 42.00 4.35
674 675 3.503363 TCTTGTACATGCTTTCTGCCTTG 59.497 43.478 0.00 0.00 42.00 3.61
675 676 2.862541 TGTACATGCTTTCTGCCTTGT 58.137 42.857 0.00 0.00 42.00 3.16
676 677 4.014569 TGTACATGCTTTCTGCCTTGTA 57.985 40.909 0.00 0.00 42.00 2.41
677 678 4.588899 TGTACATGCTTTCTGCCTTGTAT 58.411 39.130 0.00 0.00 39.63 2.29
678 679 5.739959 TGTACATGCTTTCTGCCTTGTATA 58.260 37.500 0.00 0.00 39.63 1.47
679 680 6.176896 TGTACATGCTTTCTGCCTTGTATAA 58.823 36.000 0.00 0.00 39.63 0.98
680 681 6.657117 TGTACATGCTTTCTGCCTTGTATAAA 59.343 34.615 0.00 0.00 39.63 1.40
681 682 6.199937 ACATGCTTTCTGCCTTGTATAAAG 57.800 37.500 0.00 0.00 42.00 1.85
682 683 5.945784 ACATGCTTTCTGCCTTGTATAAAGA 59.054 36.000 0.00 0.00 42.00 2.52
683 684 6.604795 ACATGCTTTCTGCCTTGTATAAAGAT 59.395 34.615 0.00 0.00 42.00 2.40
684 685 7.775093 ACATGCTTTCTGCCTTGTATAAAGATA 59.225 33.333 0.00 0.00 42.00 1.98
685 686 8.790718 CATGCTTTCTGCCTTGTATAAAGATAT 58.209 33.333 0.00 0.00 42.00 1.63
686 687 8.158169 TGCTTTCTGCCTTGTATAAAGATATG 57.842 34.615 0.00 0.00 42.00 1.78
687 688 7.229306 TGCTTTCTGCCTTGTATAAAGATATGG 59.771 37.037 0.00 0.00 42.00 2.74
688 689 7.229506 GCTTTCTGCCTTGTATAAAGATATGGT 59.770 37.037 0.00 0.00 35.15 3.55
689 690 9.778741 CTTTCTGCCTTGTATAAAGATATGGTA 57.221 33.333 0.00 0.00 30.44 3.25
690 691 9.555727 TTTCTGCCTTGTATAAAGATATGGTAC 57.444 33.333 0.00 0.00 0.00 3.34
691 692 7.375834 TCTGCCTTGTATAAAGATATGGTACG 58.624 38.462 0.00 0.00 0.00 3.67
692 693 5.929992 TGCCTTGTATAAAGATATGGTACGC 59.070 40.000 0.00 0.00 0.00 4.42
693 694 5.350640 GCCTTGTATAAAGATATGGTACGCC 59.649 44.000 0.00 0.00 0.00 5.68
708 709 1.065358 ACGCCATTGACGTACTTTCG 58.935 50.000 0.00 0.00 43.02 3.46
709 710 1.336148 ACGCCATTGACGTACTTTCGA 60.336 47.619 0.00 0.00 43.02 3.71
710 711 1.722464 CGCCATTGACGTACTTTCGAA 59.278 47.619 0.00 0.00 34.70 3.71
711 712 2.156117 CGCCATTGACGTACTTTCGAAA 59.844 45.455 10.71 10.71 34.70 3.46
712 713 3.363182 CGCCATTGACGTACTTTCGAAAA 60.363 43.478 12.41 0.00 34.70 2.29
713 714 4.529446 GCCATTGACGTACTTTCGAAAAA 58.471 39.130 12.41 1.72 34.70 1.94
819 826 2.270352 TGGTCCACAACTCAATCCAC 57.730 50.000 0.00 0.00 0.00 4.02
839 846 1.795170 CGTCCTTTTGTGCACCCCAG 61.795 60.000 15.69 6.83 0.00 4.45
974 985 0.032615 CAGGCCCCTGTACTCTCTCT 60.033 60.000 0.00 0.00 39.10 3.10
1091 1114 3.213402 CGACGCCCTCCTCTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
1266 1289 4.986708 TGCCCCGGCCAGAAAACC 62.987 66.667 2.24 0.00 41.09 3.27
1309 1332 1.658686 CCTCCTGCGCTACTCGAACT 61.659 60.000 9.73 0.00 41.67 3.01
1486 1513 4.429212 CGGCCGACATCACGTCCA 62.429 66.667 24.07 0.00 42.07 4.02
1582 1609 1.433879 GTCTCGTCCATCCTGACCG 59.566 63.158 0.00 0.00 31.35 4.79
1590 1617 3.157252 ATCCTGACCGCCTGCGAT 61.157 61.111 13.94 0.00 42.83 4.58
1602 1629 4.113815 TGCGATGGGAAGCAGGGG 62.114 66.667 0.00 0.00 38.59 4.79
1740 1782 4.899239 GATCAGTCCGGCCCTGCG 62.899 72.222 14.21 0.00 0.00 5.18
1777 1834 1.126846 CAATGTCTCCGTCAACTTCGC 59.873 52.381 0.00 0.00 0.00 4.70
1789 1848 2.879462 CTTCGCTGTCCGTACGCC 60.879 66.667 10.49 2.76 38.35 5.68
1813 1872 2.009042 GCGTTTCTAGCTGGCTGACAT 61.009 52.381 5.25 0.00 0.00 3.06
1978 3888 0.396435 ATCTTCGTTGTGGGTGCAGA 59.604 50.000 0.00 0.00 0.00 4.26
2119 4107 5.049828 CGAACATGTGCAGATATCCAACTA 58.950 41.667 4.29 0.00 0.00 2.24
2140 4128 1.444553 GTGAGTGCTTCTCGGTCGG 60.445 63.158 5.36 0.00 45.46 4.79
2190 4197 4.018415 AGAAGACCAGCCAGGCTTAATTTA 60.018 41.667 12.86 0.00 43.14 1.40
2263 4286 2.823154 AGCTCAGAGTCTCTGTTGTACC 59.177 50.000 25.68 11.19 44.58 3.34
2380 4403 1.742761 ACTTGGAACATGAGCATCCG 58.257 50.000 0.00 0.00 39.30 4.18
2388 4412 1.293924 CATGAGCATCCGTCTCCAAC 58.706 55.000 0.00 0.00 0.00 3.77
2394 4418 2.766263 AGCATCCGTCTCCAACTGATTA 59.234 45.455 0.00 0.00 30.22 1.75
2395 4419 3.389329 AGCATCCGTCTCCAACTGATTAT 59.611 43.478 0.00 0.00 30.22 1.28
2396 4420 3.496130 GCATCCGTCTCCAACTGATTATG 59.504 47.826 0.00 0.00 30.22 1.90
2398 4422 2.766263 TCCGTCTCCAACTGATTATGCT 59.234 45.455 0.00 0.00 0.00 3.79
2399 4423 3.197766 TCCGTCTCCAACTGATTATGCTT 59.802 43.478 0.00 0.00 0.00 3.91
2401 4425 3.557595 CGTCTCCAACTGATTATGCTTCC 59.442 47.826 0.00 0.00 0.00 3.46
2403 4427 5.128919 GTCTCCAACTGATTATGCTTCCAT 58.871 41.667 0.00 0.00 35.44 3.41
2450 4498 3.047877 GTTTGGTCGGTCAGGGCG 61.048 66.667 0.00 0.00 0.00 6.13
2715 4913 9.935241 AACTGTTATATCCAGCTGACATATAAG 57.065 33.333 24.47 19.57 33.09 1.73
2719 4917 9.504710 GTTATATCCAGCTGACATATAAGTACG 57.495 37.037 24.47 5.31 29.53 3.67
2724 4922 5.048013 CCAGCTGACATATAAGTACGATGGA 60.048 44.000 17.39 0.00 32.36 3.41
2725 4923 6.350528 CCAGCTGACATATAAGTACGATGGAT 60.351 42.308 17.39 0.00 32.36 3.41
2736 4953 4.009675 AGTACGATGGATTTGCACATGTT 58.990 39.130 0.00 0.00 0.00 2.71
2936 5153 2.558313 GCCAAGCTGTTCAGCGTC 59.442 61.111 17.28 6.15 40.27 5.19
3000 5241 8.041323 CCTAGTGAGTTTGTTATAACAGGTCAT 58.959 37.037 17.36 12.75 40.50 3.06
3001 5242 7.672983 AGTGAGTTTGTTATAACAGGTCATG 57.327 36.000 17.36 0.00 40.50 3.07
3002 5243 6.655003 AGTGAGTTTGTTATAACAGGTCATGG 59.345 38.462 17.36 0.00 40.50 3.66
3003 5244 5.414454 TGAGTTTGTTATAACAGGTCATGGC 59.586 40.000 17.36 0.00 40.50 4.40
3134 5387 1.226603 GTACAGCTACGGCGTCCTG 60.227 63.158 28.02 28.02 44.37 3.86
3140 5393 1.097547 GCTACGGCGTCCTGGTACTA 61.098 60.000 19.21 0.00 0.00 1.82
3216 5469 3.487711 CGAAGATCTTCTGACCACGGTAG 60.488 52.174 28.28 8.62 37.44 3.18
3226 5479 2.345991 CACGGTAGGGGTGGTGTG 59.654 66.667 0.00 0.00 0.00 3.82
3227 5480 2.202053 ACGGTAGGGGTGGTGTGA 59.798 61.111 0.00 0.00 0.00 3.58
3228 5481 2.212110 ACGGTAGGGGTGGTGTGAC 61.212 63.158 0.00 0.00 0.00 3.67
3229 5482 2.951101 CGGTAGGGGTGGTGTGACC 61.951 68.421 0.00 0.00 39.22 4.02
3262 5523 3.238108 GACGGATCAGTCAGTCAATGT 57.762 47.619 19.49 0.00 45.33 2.71
3264 5525 4.938080 GACGGATCAGTCAGTCAATGTAT 58.062 43.478 19.49 0.00 45.33 2.29
3265 5526 6.073327 GACGGATCAGTCAGTCAATGTATA 57.927 41.667 19.49 0.00 45.33 1.47
3267 5528 7.055667 ACGGATCAGTCAGTCAATGTATAAT 57.944 36.000 0.00 0.00 0.00 1.28
3268 5529 7.500992 ACGGATCAGTCAGTCAATGTATAATT 58.499 34.615 0.00 0.00 0.00 1.40
3269 5530 7.439356 ACGGATCAGTCAGTCAATGTATAATTG 59.561 37.037 0.00 0.00 0.00 2.32
3270 5531 7.095481 CGGATCAGTCAGTCAATGTATAATTGG 60.095 40.741 0.00 0.00 0.00 3.16
3271 5532 7.716998 GGATCAGTCAGTCAATGTATAATTGGT 59.283 37.037 0.00 0.00 0.00 3.67
3272 5533 9.113838 GATCAGTCAGTCAATGTATAATTGGTT 57.886 33.333 0.00 0.00 0.00 3.67
3274 5535 9.952030 TCAGTCAGTCAATGTATAATTGGTTAA 57.048 29.630 0.00 0.00 0.00 2.01
3314 5684 1.152030 AGGTCTGGAGGCACTGGAA 60.152 57.895 0.00 0.00 41.55 3.53
3330 5700 4.309950 AACCGTGGGAGCGTGTCC 62.310 66.667 0.00 0.00 46.10 4.02
3342 5712 2.264794 GTGTCCGGGTTGCTCGAT 59.735 61.111 0.00 0.00 0.00 3.59
3700 6070 2.497107 CCAAACTTTCAGCAGTGTGG 57.503 50.000 0.00 0.00 44.30 4.17
3795 6167 7.754069 TTAATTTTTCCGCAGAAATGCTATG 57.246 32.000 0.00 0.00 41.55 2.23
3815 6187 4.519191 TGTTTTAGTCGACCGAAAACAC 57.481 40.909 33.61 21.66 44.14 3.32
3819 6191 0.748450 AGTCGACCGAAAACACCTCA 59.252 50.000 13.01 0.00 0.00 3.86
3869 6241 6.530019 AGTCACTCATTGTTTTTCCTTGTT 57.470 33.333 0.00 0.00 0.00 2.83
3875 6247 8.720562 CACTCATTGTTTTTCCTTGTTTTTCTT 58.279 29.630 0.00 0.00 0.00 2.52
3882 6254 8.769891 TGTTTTTCCTTGTTTTTCTTCAAGTTC 58.230 29.630 0.00 0.00 39.25 3.01
3883 6255 8.988934 GTTTTTCCTTGTTTTTCTTCAAGTTCT 58.011 29.630 0.00 0.00 39.25 3.01
3884 6256 8.757164 TTTTCCTTGTTTTTCTTCAAGTTCTC 57.243 30.769 0.00 0.00 39.25 2.87
3885 6257 7.461182 TTCCTTGTTTTTCTTCAAGTTCTCA 57.539 32.000 0.00 0.00 39.25 3.27
3886 6258 7.461182 TCCTTGTTTTTCTTCAAGTTCTCAA 57.539 32.000 0.00 0.00 39.25 3.02
3887 6259 7.891561 TCCTTGTTTTTCTTCAAGTTCTCAAA 58.108 30.769 0.00 0.00 39.25 2.69
3888 6260 8.364142 TCCTTGTTTTTCTTCAAGTTCTCAAAA 58.636 29.630 0.00 0.00 39.25 2.44
3889 6261 9.154847 CCTTGTTTTTCTTCAAGTTCTCAAAAT 57.845 29.630 0.00 0.00 39.25 1.82
3892 6264 9.801873 TGTTTTTCTTCAAGTTCTCAAAATAGG 57.198 29.630 0.00 0.00 0.00 2.57
3893 6265 8.755941 GTTTTTCTTCAAGTTCTCAAAATAGGC 58.244 33.333 0.00 0.00 0.00 3.93
3894 6266 7.823745 TTTCTTCAAGTTCTCAAAATAGGCT 57.176 32.000 0.00 0.00 0.00 4.58
3895 6267 7.823745 TTCTTCAAGTTCTCAAAATAGGCTT 57.176 32.000 0.00 0.00 0.00 4.35
3896 6268 7.823745 TCTTCAAGTTCTCAAAATAGGCTTT 57.176 32.000 0.00 0.00 0.00 3.51
3897 6269 7.875971 TCTTCAAGTTCTCAAAATAGGCTTTC 58.124 34.615 0.00 0.00 0.00 2.62
3898 6270 6.241207 TCAAGTTCTCAAAATAGGCTTTCG 57.759 37.500 0.00 0.00 0.00 3.46
3899 6271 4.686839 AGTTCTCAAAATAGGCTTTCGC 57.313 40.909 0.00 0.00 0.00 4.70
3909 6281 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
3910 6282 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
3911 6283 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
3912 6284 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
3913 6285 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
3914 6286 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
3915 6287 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
3916 6288 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
3918 6290 4.453751 TCGCCCCGCTTTATAAATAAAGT 58.546 39.130 18.85 0.00 46.78 2.66
3919 6291 5.609423 TCGCCCCGCTTTATAAATAAAGTA 58.391 37.500 18.85 0.90 46.78 2.24
3920 6292 6.054295 TCGCCCCGCTTTATAAATAAAGTAA 58.946 36.000 18.85 1.43 46.78 2.24
3921 6293 6.018016 TCGCCCCGCTTTATAAATAAAGTAAC 60.018 38.462 18.85 6.47 46.78 2.50
3922 6294 6.238429 CGCCCCGCTTTATAAATAAAGTAACA 60.238 38.462 18.85 0.00 46.78 2.41
3923 6295 7.520937 CGCCCCGCTTTATAAATAAAGTAACAT 60.521 37.037 18.85 0.00 46.78 2.71
3924 6296 7.806487 GCCCCGCTTTATAAATAAAGTAACATC 59.194 37.037 18.85 5.41 46.78 3.06
3925 6297 8.842280 CCCCGCTTTATAAATAAAGTAACATCA 58.158 33.333 18.85 0.00 46.78 3.07
3926 6298 9.659830 CCCGCTTTATAAATAAAGTAACATCAC 57.340 33.333 18.85 4.35 46.78 3.06
3938 6310 9.751542 ATAAAGTAACATCACAGAGTACATAGC 57.248 33.333 0.00 0.00 0.00 2.97
3939 6311 7.411486 AAGTAACATCACAGAGTACATAGCT 57.589 36.000 0.00 0.00 0.00 3.32
3940 6312 6.800543 AGTAACATCACAGAGTACATAGCTG 58.199 40.000 0.00 0.00 35.81 4.24
3941 6313 5.921962 AACATCACAGAGTACATAGCTGA 57.078 39.130 0.00 0.00 33.94 4.26
3942 6314 5.921962 ACATCACAGAGTACATAGCTGAA 57.078 39.130 0.00 0.00 33.94 3.02
3943 6315 5.655488 ACATCACAGAGTACATAGCTGAAC 58.345 41.667 0.00 0.00 33.94 3.18
3944 6316 5.185828 ACATCACAGAGTACATAGCTGAACA 59.814 40.000 0.00 0.00 33.94 3.18
3945 6317 5.722021 TCACAGAGTACATAGCTGAACAA 57.278 39.130 0.00 0.00 33.94 2.83
3946 6318 6.286240 TCACAGAGTACATAGCTGAACAAT 57.714 37.500 0.00 0.00 33.94 2.71
3947 6319 7.404671 TCACAGAGTACATAGCTGAACAATA 57.595 36.000 0.00 0.00 33.94 1.90
3948 6320 7.258441 TCACAGAGTACATAGCTGAACAATAC 58.742 38.462 0.00 0.00 33.94 1.89
3949 6321 7.035612 CACAGAGTACATAGCTGAACAATACA 58.964 38.462 0.00 0.00 33.94 2.29
3950 6322 7.708322 CACAGAGTACATAGCTGAACAATACAT 59.292 37.037 0.00 0.00 33.94 2.29
3951 6323 8.914011 ACAGAGTACATAGCTGAACAATACATA 58.086 33.333 0.00 0.00 33.94 2.29
3952 6324 9.404348 CAGAGTACATAGCTGAACAATACATAG 57.596 37.037 0.00 0.00 0.00 2.23
3975 6347 3.387947 GCTTCGGGAGGGGACGAA 61.388 66.667 0.00 0.00 45.61 3.85
4078 6453 2.236395 CCTCCGTTTGACCTAACTCCAT 59.764 50.000 0.00 0.00 0.00 3.41
4091 6467 8.577296 TGACCTAACTCCATCTCTATAAATTCG 58.423 37.037 0.00 0.00 0.00 3.34
4111 6487 6.385649 TTCGCAAAAATCAGAAAACCTACT 57.614 33.333 0.00 0.00 0.00 2.57
4167 6543 2.092429 AGCCTCTGTTCTCGAGAGATCT 60.092 50.000 15.94 0.00 39.58 2.75
4199 6576 3.876589 TTTCTGGCACTCCGTCGGC 62.877 63.158 6.34 0.00 34.14 5.54
4257 6635 0.676466 TGCCCTTTCGATGATGCGTT 60.676 50.000 0.00 0.00 0.00 4.84
4299 6677 4.995536 ACGGGTCCATAGTTAGTAGCTAT 58.004 43.478 0.00 0.93 0.00 2.97
4306 6684 7.201839 GGTCCATAGTTAGTAGCTATATGGCTC 60.202 44.444 17.77 15.30 41.68 4.70
4309 6687 7.201866 CCATAGTTAGTAGCTATATGGCTCCTG 60.202 44.444 17.77 0.00 42.97 3.86
4338 6716 7.489435 TCTCTCGATGTTCTTCAATACAATGTC 59.511 37.037 0.00 0.00 0.00 3.06
4342 6720 6.536582 CGATGTTCTTCAATACAATGTCCTCT 59.463 38.462 0.00 0.00 0.00 3.69
4364 6742 7.609532 CCTCTTTGATGTTCTTGGAGTTCTATT 59.390 37.037 0.00 0.00 0.00 1.73
4400 6781 2.106566 TGCAGTGTGTTTGTTGGGATT 58.893 42.857 0.00 0.00 0.00 3.01
4405 6786 3.888930 AGTGTGTTTGTTGGGATTCGATT 59.111 39.130 0.00 0.00 0.00 3.34
4407 6788 5.181245 AGTGTGTTTGTTGGGATTCGATTAG 59.819 40.000 0.00 0.00 0.00 1.73
4409 6790 5.180492 TGTGTTTGTTGGGATTCGATTAGTC 59.820 40.000 0.00 0.00 0.00 2.59
4437 6818 8.537858 TGAGTTTATGATCAGATCTATCCATGG 58.462 37.037 4.97 4.97 0.00 3.66
4519 6901 7.570132 TCTTTCCCGATCTATTGATTTGGTTA 58.430 34.615 8.00 0.00 32.19 2.85
4550 6932 8.985315 ACTAGATTGATTTATCTTGCAATGGA 57.015 30.769 0.00 0.00 36.34 3.41
4569 6953 2.229784 GGAAAGAGGTGCTTTGTGATGG 59.770 50.000 0.00 0.00 46.52 3.51
4588 6972 1.066430 GGGTTCGATCTTGTGGTGCTA 60.066 52.381 0.00 0.00 0.00 3.49
4589 6973 2.420129 GGGTTCGATCTTGTGGTGCTAT 60.420 50.000 0.00 0.00 0.00 2.97
4610 6994 1.352083 TCCCAGTGACAGAAAGGGAG 58.648 55.000 0.00 0.00 43.39 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.146837 CGATTTCAGATCTGTTTTGACTGTCT 59.853 38.462 21.92 0.00 0.00 3.41
80 81 7.905265 TGACCCAAACACAAAATGATTCATAT 58.095 30.769 0.00 0.00 0.00 1.78
86 87 6.176183 TGTTTTGACCCAAACACAAAATGAT 58.824 32.000 0.00 0.00 42.53 2.45
122 123 2.421424 GCACACACTCCCATCAGAAATC 59.579 50.000 0.00 0.00 0.00 2.17
143 144 6.597672 TGTATAAATTAACCTGCACTCCACAG 59.402 38.462 0.00 0.00 34.82 3.66
150 151 9.769093 CTGTACTTTGTATAAATTAACCTGCAC 57.231 33.333 0.00 0.00 0.00 4.57
242 243 0.887933 CGGTGGATTTTGGACCCTTG 59.112 55.000 0.00 0.00 0.00 3.61
246 247 1.873270 GCACCGGTGGATTTTGGACC 61.873 60.000 34.58 11.10 0.00 4.46
247 248 1.175983 TGCACCGGTGGATTTTGGAC 61.176 55.000 34.58 15.63 0.00 4.02
249 250 2.275880 ATGCACCGGTGGATTTTGG 58.724 52.632 33.31 7.89 38.53 3.28
254 255 1.614711 ATCCAATGCACCGGTGGAT 59.385 52.632 33.31 33.31 45.04 3.41
255 256 1.378382 CATCCAATGCACCGGTGGA 60.378 57.895 34.58 33.26 45.29 4.02
256 257 3.199551 CATCCAATGCACCGGTGG 58.800 61.111 34.58 18.91 0.00 4.61
274 275 0.664166 GTGCACCGAGGCAATTTGTG 60.664 55.000 5.22 0.00 46.93 3.33
275 276 1.106351 TGTGCACCGAGGCAATTTGT 61.106 50.000 15.69 0.00 46.93 2.83
276 277 0.244450 ATGTGCACCGAGGCAATTTG 59.756 50.000 15.69 0.00 46.93 2.32
277 278 0.244450 CATGTGCACCGAGGCAATTT 59.756 50.000 15.69 0.00 46.93 1.82
278 279 1.597797 CCATGTGCACCGAGGCAATT 61.598 55.000 15.69 0.00 46.93 2.32
280 281 2.672651 CCATGTGCACCGAGGCAA 60.673 61.111 15.69 0.00 46.93 4.52
290 291 0.454600 CCAGAGAATGTGCCATGTGC 59.545 55.000 0.00 0.00 41.77 4.57
291 292 1.471287 CACCAGAGAATGTGCCATGTG 59.529 52.381 0.00 0.00 0.00 3.21
294 295 0.682209 GCCACCAGAGAATGTGCCAT 60.682 55.000 0.00 0.00 0.00 4.40
295 296 1.303561 GCCACCAGAGAATGTGCCA 60.304 57.895 0.00 0.00 0.00 4.92
296 297 2.048603 GGCCACCAGAGAATGTGCC 61.049 63.158 0.00 0.00 0.00 5.01
297 298 1.001641 AGGCCACCAGAGAATGTGC 60.002 57.895 5.01 0.00 0.00 4.57
298 299 1.310933 GCAGGCCACCAGAGAATGTG 61.311 60.000 5.01 0.00 0.00 3.21
299 300 1.001641 GCAGGCCACCAGAGAATGT 60.002 57.895 5.01 0.00 0.00 2.71
315 316 1.449070 CATCTCTCAGCTTGCCGCA 60.449 57.895 0.00 0.00 42.61 5.69
316 317 2.178890 CCATCTCTCAGCTTGCCGC 61.179 63.158 0.00 0.00 39.57 6.53
317 318 0.530211 CTCCATCTCTCAGCTTGCCG 60.530 60.000 0.00 0.00 0.00 5.69
318 319 0.829333 TCTCCATCTCTCAGCTTGCC 59.171 55.000 0.00 0.00 0.00 4.52
320 321 2.109774 AGGTCTCCATCTCTCAGCTTG 58.890 52.381 0.00 0.00 0.00 4.01
321 322 2.109774 CAGGTCTCCATCTCTCAGCTT 58.890 52.381 0.00 0.00 0.00 3.74
322 323 1.688942 CCAGGTCTCCATCTCTCAGCT 60.689 57.143 0.00 0.00 0.00 4.24
324 325 1.063341 TCCCAGGTCTCCATCTCTCAG 60.063 57.143 0.00 0.00 0.00 3.35
326 327 2.038659 CTTCCCAGGTCTCCATCTCTC 58.961 57.143 0.00 0.00 0.00 3.20
327 328 1.648568 TCTTCCCAGGTCTCCATCTCT 59.351 52.381 0.00 0.00 0.00 3.10
328 329 2.166907 TCTTCCCAGGTCTCCATCTC 57.833 55.000 0.00 0.00 0.00 2.75
330 331 2.158696 CCATTCTTCCCAGGTCTCCATC 60.159 54.545 0.00 0.00 0.00 3.51
331 332 1.849039 CCATTCTTCCCAGGTCTCCAT 59.151 52.381 0.00 0.00 0.00 3.41
332 333 1.289160 CCATTCTTCCCAGGTCTCCA 58.711 55.000 0.00 0.00 0.00 3.86
333 334 1.290134 ACCATTCTTCCCAGGTCTCC 58.710 55.000 0.00 0.00 0.00 3.71
334 335 2.678190 CGAACCATTCTTCCCAGGTCTC 60.678 54.545 0.00 0.00 32.05 3.36
335 336 1.279271 CGAACCATTCTTCCCAGGTCT 59.721 52.381 0.00 0.00 32.05 3.85
336 337 1.003233 ACGAACCATTCTTCCCAGGTC 59.997 52.381 0.00 0.00 32.05 3.85
337 338 1.003233 GACGAACCATTCTTCCCAGGT 59.997 52.381 0.00 0.00 35.47 4.00
338 339 1.739067 GACGAACCATTCTTCCCAGG 58.261 55.000 0.00 0.00 0.00 4.45
339 340 1.359848 CGACGAACCATTCTTCCCAG 58.640 55.000 0.00 0.00 0.00 4.45
340 341 0.036765 CCGACGAACCATTCTTCCCA 60.037 55.000 0.00 0.00 0.00 4.37
341 342 1.366854 GCCGACGAACCATTCTTCCC 61.367 60.000 0.00 0.00 0.00 3.97
342 343 0.672401 TGCCGACGAACCATTCTTCC 60.672 55.000 0.00 0.00 0.00 3.46
343 344 1.062587 CATGCCGACGAACCATTCTTC 59.937 52.381 0.00 0.00 0.00 2.87
344 345 1.086696 CATGCCGACGAACCATTCTT 58.913 50.000 0.00 0.00 0.00 2.52
346 347 0.652592 CTCATGCCGACGAACCATTC 59.347 55.000 0.00 0.00 0.00 2.67
347 348 1.369091 GCTCATGCCGACGAACCATT 61.369 55.000 0.00 0.00 0.00 3.16
349 350 2.434185 GCTCATGCCGACGAACCA 60.434 61.111 0.00 0.00 0.00 3.67
351 352 0.447801 AAATGCTCATGCCGACGAAC 59.552 50.000 0.00 0.00 38.71 3.95
353 354 2.238942 ATAAATGCTCATGCCGACGA 57.761 45.000 0.00 0.00 38.71 4.20
354 355 3.665323 GCTTATAAATGCTCATGCCGACG 60.665 47.826 0.00 0.00 38.71 5.12
355 356 3.365364 GGCTTATAAATGCTCATGCCGAC 60.365 47.826 0.00 0.00 38.71 4.79
356 357 2.813754 GGCTTATAAATGCTCATGCCGA 59.186 45.455 0.00 0.00 38.71 5.54
357 358 2.553602 TGGCTTATAAATGCTCATGCCG 59.446 45.455 0.00 0.00 41.73 5.69
358 359 3.613432 GCTGGCTTATAAATGCTCATGCC 60.613 47.826 0.00 0.00 38.71 4.40
359 360 3.572584 GCTGGCTTATAAATGCTCATGC 58.427 45.455 0.00 0.00 40.20 4.06
363 364 2.030451 GCTGGCTGGCTTATAAATGCTC 60.030 50.000 2.00 0.00 0.00 4.26
365 366 1.959282 AGCTGGCTGGCTTATAAATGC 59.041 47.619 2.00 0.00 39.86 3.56
366 367 5.972107 AATAGCTGGCTGGCTTATAAATG 57.028 39.130 10.35 0.00 42.97 2.32
367 368 6.070656 TCAAATAGCTGGCTGGCTTATAAAT 58.929 36.000 10.35 0.00 42.97 1.40
368 369 5.445069 TCAAATAGCTGGCTGGCTTATAAA 58.555 37.500 10.35 0.00 42.97 1.40
371 372 3.582998 TCAAATAGCTGGCTGGCTTAT 57.417 42.857 10.35 0.00 42.97 1.73
372 373 3.364460 TTCAAATAGCTGGCTGGCTTA 57.636 42.857 10.35 0.00 42.97 3.09
375 376 3.531934 ATTTTCAAATAGCTGGCTGGC 57.468 42.857 5.25 0.00 0.00 4.85
376 377 5.581126 TGTATTTTCAAATAGCTGGCTGG 57.419 39.130 5.25 0.00 31.94 4.85
377 378 5.512788 CGTTGTATTTTCAAATAGCTGGCTG 59.487 40.000 5.25 0.00 31.94 4.85
378 379 5.414454 TCGTTGTATTTTCAAATAGCTGGCT 59.586 36.000 0.00 0.00 31.94 4.75
379 380 5.636837 TCGTTGTATTTTCAAATAGCTGGC 58.363 37.500 0.00 0.00 31.94 4.85
380 381 6.093495 TCCTCGTTGTATTTTCAAATAGCTGG 59.907 38.462 0.00 0.00 31.94 4.85
381 382 7.072177 TCCTCGTTGTATTTTCAAATAGCTG 57.928 36.000 0.00 0.00 31.94 4.24
382 383 6.183360 GCTCCTCGTTGTATTTTCAAATAGCT 60.183 38.462 0.00 0.00 31.94 3.32
383 384 5.965918 GCTCCTCGTTGTATTTTCAAATAGC 59.034 40.000 0.00 0.00 31.94 2.97
384 385 7.148407 ACAGCTCCTCGTTGTATTTTCAAATAG 60.148 37.037 0.00 0.00 35.12 1.73
385 386 6.653320 ACAGCTCCTCGTTGTATTTTCAAATA 59.347 34.615 0.00 0.00 35.12 1.40
386 387 5.473504 ACAGCTCCTCGTTGTATTTTCAAAT 59.526 36.000 0.00 0.00 35.12 2.32
387 388 4.819630 ACAGCTCCTCGTTGTATTTTCAAA 59.180 37.500 0.00 0.00 35.12 2.69
388 389 4.385825 ACAGCTCCTCGTTGTATTTTCAA 58.614 39.130 0.00 0.00 35.12 2.69
389 390 3.994392 GACAGCTCCTCGTTGTATTTTCA 59.006 43.478 0.00 0.00 37.18 2.69
390 391 3.371285 GGACAGCTCCTCGTTGTATTTTC 59.629 47.826 0.00 0.00 37.18 2.29
391 392 3.008049 AGGACAGCTCCTCGTTGTATTTT 59.992 43.478 0.00 0.00 44.59 1.82
392 393 2.567615 AGGACAGCTCCTCGTTGTATTT 59.432 45.455 0.00 0.00 44.59 1.40
393 394 2.093973 CAGGACAGCTCCTCGTTGTATT 60.094 50.000 0.00 0.00 44.59 1.89
394 395 1.478510 CAGGACAGCTCCTCGTTGTAT 59.521 52.381 0.00 0.00 44.59 2.29
395 396 0.888619 CAGGACAGCTCCTCGTTGTA 59.111 55.000 0.00 0.00 44.59 2.41
396 397 1.668294 CAGGACAGCTCCTCGTTGT 59.332 57.895 0.00 0.00 44.59 3.32
397 398 1.739562 GCAGGACAGCTCCTCGTTG 60.740 63.158 0.00 0.00 44.59 4.10
398 399 2.164865 CTGCAGGACAGCTCCTCGTT 62.165 60.000 5.57 0.00 44.59 3.85
399 400 2.601666 TGCAGGACAGCTCCTCGT 60.602 61.111 0.00 0.00 44.59 4.18
400 401 2.183811 CTGCAGGACAGCTCCTCG 59.816 66.667 5.57 0.00 44.59 4.63
408 409 2.583441 AACGGCTAGCTGCAGGACA 61.583 57.895 23.72 0.00 45.15 4.02
409 410 2.103042 CAACGGCTAGCTGCAGGAC 61.103 63.158 23.72 0.00 45.15 3.85
410 411 2.265739 CAACGGCTAGCTGCAGGA 59.734 61.111 23.72 0.00 45.15 3.86
411 412 2.821366 CCAACGGCTAGCTGCAGG 60.821 66.667 23.72 20.25 45.15 4.85
412 413 2.821366 CCCAACGGCTAGCTGCAG 60.821 66.667 23.72 15.35 45.15 4.41
413 414 4.408821 CCCCAACGGCTAGCTGCA 62.409 66.667 23.72 0.00 45.15 4.41
424 425 3.886550 CTCCCAACCCAGCCCCAAC 62.887 68.421 0.00 0.00 0.00 3.77
425 426 3.589542 CTCCCAACCCAGCCCCAA 61.590 66.667 0.00 0.00 0.00 4.12
448 449 2.464459 GGCATTCAACCGAGCCTCG 61.464 63.158 7.25 7.25 43.70 4.63
449 450 2.115291 GGGCATTCAACCGAGCCTC 61.115 63.158 0.00 0.00 46.23 4.70
450 451 2.044946 GGGCATTCAACCGAGCCT 60.045 61.111 0.00 0.00 46.23 4.58
451 452 2.361104 TGGGCATTCAACCGAGCC 60.361 61.111 0.00 0.00 46.28 4.70
452 453 1.372087 CTCTGGGCATTCAACCGAGC 61.372 60.000 0.00 0.00 33.37 5.03
453 454 1.372087 GCTCTGGGCATTCAACCGAG 61.372 60.000 0.00 0.00 41.35 4.63
454 455 1.377202 GCTCTGGGCATTCAACCGA 60.377 57.895 0.00 0.00 41.35 4.69
455 456 1.377725 AGCTCTGGGCATTCAACCG 60.378 57.895 0.74 0.00 44.79 4.44
456 457 1.941999 GCAGCTCTGGGCATTCAACC 61.942 60.000 0.74 0.00 44.79 3.77
457 458 1.509923 GCAGCTCTGGGCATTCAAC 59.490 57.895 0.74 0.00 44.79 3.18
458 459 1.679977 GGCAGCTCTGGGCATTCAA 60.680 57.895 0.74 0.00 44.79 2.69
459 460 2.044650 GGCAGCTCTGGGCATTCA 60.045 61.111 0.74 0.00 44.79 2.57
460 461 1.379576 AAGGCAGCTCTGGGCATTC 60.380 57.895 0.74 0.00 44.79 2.67
461 462 1.681327 CAAGGCAGCTCTGGGCATT 60.681 57.895 0.74 0.00 44.79 3.56
462 463 2.044252 CAAGGCAGCTCTGGGCAT 60.044 61.111 0.74 0.00 44.79 4.40
476 477 1.091771 CGTATCACCTGGCCTGCAAG 61.092 60.000 3.32 0.00 0.00 4.01
477 478 1.078497 CGTATCACCTGGCCTGCAA 60.078 57.895 3.32 0.00 0.00 4.08
478 479 2.584064 CGTATCACCTGGCCTGCA 59.416 61.111 3.32 0.00 0.00 4.41
479 480 2.897350 GCGTATCACCTGGCCTGC 60.897 66.667 3.32 0.00 0.00 4.85
480 481 1.146930 ATGCGTATCACCTGGCCTG 59.853 57.895 3.32 2.54 0.00 4.85
481 482 1.146930 CATGCGTATCACCTGGCCT 59.853 57.895 3.32 0.00 0.00 5.19
482 483 1.153168 ACATGCGTATCACCTGGCC 60.153 57.895 0.00 0.00 0.00 5.36
483 484 0.461870 TGACATGCGTATCACCTGGC 60.462 55.000 0.00 0.00 0.00 4.85
484 485 1.575244 CTGACATGCGTATCACCTGG 58.425 55.000 0.00 0.00 0.00 4.45
485 486 1.134699 ACCTGACATGCGTATCACCTG 60.135 52.381 0.00 0.00 0.00 4.00
486 487 1.195115 ACCTGACATGCGTATCACCT 58.805 50.000 0.00 0.00 0.00 4.00
487 488 1.933853 GAACCTGACATGCGTATCACC 59.066 52.381 0.00 0.00 0.00 4.02
488 489 1.588404 CGAACCTGACATGCGTATCAC 59.412 52.381 0.00 0.00 0.00 3.06
489 490 1.921243 CGAACCTGACATGCGTATCA 58.079 50.000 0.00 0.00 0.00 2.15
490 491 0.577269 GCGAACCTGACATGCGTATC 59.423 55.000 0.00 0.00 0.00 2.24
491 492 0.108377 TGCGAACCTGACATGCGTAT 60.108 50.000 0.00 0.00 0.00 3.06
492 493 0.319986 TTGCGAACCTGACATGCGTA 60.320 50.000 0.00 0.00 0.00 4.42
493 494 1.163420 TTTGCGAACCTGACATGCGT 61.163 50.000 0.00 0.00 0.00 5.24
494 495 0.168788 ATTTGCGAACCTGACATGCG 59.831 50.000 0.00 0.00 0.00 4.73
495 496 2.785679 GTATTTGCGAACCTGACATGC 58.214 47.619 0.00 0.00 0.00 4.06
496 497 2.787723 GCGTATTTGCGAACCTGACATG 60.788 50.000 0.00 0.00 0.00 3.21
497 498 1.396996 GCGTATTTGCGAACCTGACAT 59.603 47.619 0.00 0.00 0.00 3.06
498 499 0.793861 GCGTATTTGCGAACCTGACA 59.206 50.000 0.00 0.00 0.00 3.58
499 500 3.580658 GCGTATTTGCGAACCTGAC 57.419 52.632 0.00 0.00 0.00 3.51
508 509 1.504359 TGGTATAGGCGCGTATTTGC 58.496 50.000 25.80 16.21 0.00 3.68
509 510 3.059868 CAGTTGGTATAGGCGCGTATTTG 60.060 47.826 25.80 12.03 0.00 2.32
510 511 3.128349 CAGTTGGTATAGGCGCGTATTT 58.872 45.455 25.80 8.12 0.00 1.40
511 512 2.101917 ACAGTTGGTATAGGCGCGTATT 59.898 45.455 25.80 11.57 0.00 1.89
512 513 1.684983 ACAGTTGGTATAGGCGCGTAT 59.315 47.619 24.32 24.32 0.00 3.06
513 514 1.105457 ACAGTTGGTATAGGCGCGTA 58.895 50.000 12.80 12.80 0.00 4.42
514 515 0.459585 CACAGTTGGTATAGGCGCGT 60.460 55.000 8.43 8.08 0.00 6.01
515 516 0.179121 TCACAGTTGGTATAGGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
516 517 2.240493 ATCACAGTTGGTATAGGCGC 57.760 50.000 0.00 0.00 0.00 6.53
517 518 4.299155 CTGTATCACAGTTGGTATAGGCG 58.701 47.826 0.00 0.00 41.19 5.52
518 519 4.503296 CCCTGTATCACAGTTGGTATAGGC 60.503 50.000 5.65 0.00 43.36 3.93
519 520 4.040461 CCCCTGTATCACAGTTGGTATAGG 59.960 50.000 5.65 1.67 44.00 2.57
520 521 4.654262 ACCCCTGTATCACAGTTGGTATAG 59.346 45.833 13.20 0.00 43.36 1.31
521 522 4.627015 ACCCCTGTATCACAGTTGGTATA 58.373 43.478 13.20 0.00 43.36 1.47
522 523 3.460825 ACCCCTGTATCACAGTTGGTAT 58.539 45.455 13.20 0.00 43.36 2.73
523 524 2.910544 ACCCCTGTATCACAGTTGGTA 58.089 47.619 13.20 0.00 43.36 3.25
524 525 1.742308 ACCCCTGTATCACAGTTGGT 58.258 50.000 10.38 10.38 44.50 3.67
525 526 2.436417 CAACCCCTGTATCACAGTTGG 58.564 52.381 5.65 7.77 44.50 3.77
526 527 2.039746 TCCAACCCCTGTATCACAGTTG 59.960 50.000 5.65 4.71 44.50 3.16
527 528 2.344592 TCCAACCCCTGTATCACAGTT 58.655 47.619 5.65 0.00 44.50 3.16
528 529 2.038863 TCCAACCCCTGTATCACAGT 57.961 50.000 5.65 0.00 44.50 3.55
529 530 3.652057 ATTCCAACCCCTGTATCACAG 57.348 47.619 0.00 0.00 45.53 3.66
530 531 5.522315 TTAATTCCAACCCCTGTATCACA 57.478 39.130 0.00 0.00 0.00 3.58
531 532 8.706322 ATAATTAATTCCAACCCCTGTATCAC 57.294 34.615 3.39 0.00 0.00 3.06
532 533 9.802039 GTATAATTAATTCCAACCCCTGTATCA 57.198 33.333 3.39 0.00 0.00 2.15
533 534 8.943002 CGTATAATTAATTCCAACCCCTGTATC 58.057 37.037 3.39 0.00 0.00 2.24
534 535 7.886446 CCGTATAATTAATTCCAACCCCTGTAT 59.114 37.037 3.39 0.00 0.00 2.29
535 536 7.225725 CCGTATAATTAATTCCAACCCCTGTA 58.774 38.462 3.39 0.00 0.00 2.74
536 537 6.066032 CCGTATAATTAATTCCAACCCCTGT 58.934 40.000 3.39 0.00 0.00 4.00
537 538 5.048294 GCCGTATAATTAATTCCAACCCCTG 60.048 44.000 3.39 0.00 0.00 4.45
538 539 5.074804 GCCGTATAATTAATTCCAACCCCT 58.925 41.667 3.39 0.00 0.00 4.79
539 540 5.074804 AGCCGTATAATTAATTCCAACCCC 58.925 41.667 3.39 0.00 0.00 4.95
540 541 6.128090 GCTAGCCGTATAATTAATTCCAACCC 60.128 42.308 2.29 0.00 0.00 4.11
541 542 6.401796 CGCTAGCCGTATAATTAATTCCAACC 60.402 42.308 9.66 0.00 0.00 3.77
542 543 6.531439 CGCTAGCCGTATAATTAATTCCAAC 58.469 40.000 9.66 1.19 0.00 3.77
543 544 6.715344 CGCTAGCCGTATAATTAATTCCAA 57.285 37.500 9.66 0.00 0.00 3.53
558 559 1.922570 ACTTCAATACACGCTAGCCG 58.077 50.000 9.66 7.08 44.21 5.52
559 560 2.223044 GCAACTTCAATACACGCTAGCC 60.223 50.000 9.66 0.00 0.00 3.93
560 561 2.415168 TGCAACTTCAATACACGCTAGC 59.585 45.455 4.06 4.06 0.00 3.42
561 562 3.481951 CGTGCAACTTCAATACACGCTAG 60.482 47.826 0.63 0.00 46.11 3.42
562 563 2.410392 CGTGCAACTTCAATACACGCTA 59.590 45.455 0.63 0.00 46.11 4.26
563 564 1.194547 CGTGCAACTTCAATACACGCT 59.805 47.619 0.63 0.00 46.11 5.07
564 565 1.591248 CGTGCAACTTCAATACACGC 58.409 50.000 0.63 0.00 46.11 5.34
566 567 4.081761 CGATTCGTGCAACTTCAATACAC 58.918 43.478 0.00 0.00 31.75 2.90
567 568 3.424302 GCGATTCGTGCAACTTCAATACA 60.424 43.478 8.03 0.00 31.75 2.29
568 569 3.091417 GCGATTCGTGCAACTTCAATAC 58.909 45.455 8.03 0.00 31.75 1.89
569 570 2.222707 CGCGATTCGTGCAACTTCAATA 60.223 45.455 0.00 0.00 31.75 1.90
570 571 1.464023 CGCGATTCGTGCAACTTCAAT 60.464 47.619 0.00 0.00 31.75 2.57
571 572 0.110867 CGCGATTCGTGCAACTTCAA 60.111 50.000 0.00 0.00 31.75 2.69
572 573 1.491127 CGCGATTCGTGCAACTTCA 59.509 52.632 0.00 0.00 31.75 3.02
573 574 4.326058 CGCGATTCGTGCAACTTC 57.674 55.556 0.00 0.00 31.75 3.01
583 584 3.508840 CTTGCCCCCACGCGATTC 61.509 66.667 15.93 0.00 0.00 2.52
593 594 2.624674 ATATCCACACCGCTTGCCCC 62.625 60.000 0.00 0.00 0.00 5.80
594 595 1.152963 ATATCCACACCGCTTGCCC 60.153 57.895 0.00 0.00 0.00 5.36
595 596 0.463654 TGATATCCACACCGCTTGCC 60.464 55.000 0.00 0.00 0.00 4.52
596 597 1.064060 GTTGATATCCACACCGCTTGC 59.936 52.381 0.00 0.00 0.00 4.01
597 598 1.670811 GGTTGATATCCACACCGCTTG 59.329 52.381 9.01 0.00 0.00 4.01
598 599 1.742411 CGGTTGATATCCACACCGCTT 60.742 52.381 19.52 0.00 40.08 4.68
599 600 0.179084 CGGTTGATATCCACACCGCT 60.179 55.000 19.52 0.00 40.08 5.52
600 601 2.307363 CGGTTGATATCCACACCGC 58.693 57.895 19.52 0.00 40.08 5.68
601 602 1.487452 CGCGGTTGATATCCACACCG 61.487 60.000 24.02 24.02 44.56 4.94
602 603 1.772063 GCGCGGTTGATATCCACACC 61.772 60.000 8.83 7.36 0.00 4.16
603 604 1.641677 GCGCGGTTGATATCCACAC 59.358 57.895 8.83 0.00 0.00 3.82
604 605 1.880796 CGCGCGGTTGATATCCACA 60.881 57.895 24.84 0.00 0.00 4.17
605 606 0.595567 TACGCGCGGTTGATATCCAC 60.596 55.000 35.22 0.00 0.00 4.02
606 607 0.318360 CTACGCGCGGTTGATATCCA 60.318 55.000 35.22 4.41 0.00 3.41
607 608 1.615107 GCTACGCGCGGTTGATATCC 61.615 60.000 35.22 7.05 0.00 2.59
608 609 0.663568 AGCTACGCGCGGTTGATATC 60.664 55.000 35.22 12.30 45.59 1.63
609 610 0.939577 CAGCTACGCGCGGTTGATAT 60.940 55.000 35.22 13.81 45.59 1.63
610 611 1.587876 CAGCTACGCGCGGTTGATA 60.588 57.895 35.22 15.81 45.59 2.15
611 612 2.885644 CAGCTACGCGCGGTTGAT 60.886 61.111 35.22 18.92 45.59 2.57
617 618 4.271170 GACATGCAGCTACGCGCG 62.271 66.667 30.96 30.96 45.59 6.86
618 619 3.929948 GGACATGCAGCTACGCGC 61.930 66.667 5.73 0.00 39.57 6.86
619 620 2.509111 TGGACATGCAGCTACGCG 60.509 61.111 3.53 3.53 33.35 6.01
620 621 1.424493 GAGTGGACATGCAGCTACGC 61.424 60.000 0.00 0.00 0.00 4.42
621 622 0.108662 TGAGTGGACATGCAGCTACG 60.109 55.000 0.00 0.00 0.00 3.51
622 623 1.363744 GTGAGTGGACATGCAGCTAC 58.636 55.000 0.00 0.00 0.00 3.58
623 624 0.108662 CGTGAGTGGACATGCAGCTA 60.109 55.000 0.00 0.00 0.00 3.32
624 625 1.375140 CGTGAGTGGACATGCAGCT 60.375 57.895 0.00 0.00 0.00 4.24
625 626 0.742281 ATCGTGAGTGGACATGCAGC 60.742 55.000 0.00 0.00 0.00 5.25
626 627 1.730501 AATCGTGAGTGGACATGCAG 58.269 50.000 0.00 0.00 0.00 4.41
627 628 2.233676 AGTAATCGTGAGTGGACATGCA 59.766 45.455 0.00 0.00 0.00 3.96
628 629 2.860735 GAGTAATCGTGAGTGGACATGC 59.139 50.000 0.00 0.00 0.00 4.06
629 630 3.108881 CGAGTAATCGTGAGTGGACATG 58.891 50.000 4.05 0.00 0.00 3.21
630 631 2.753452 ACGAGTAATCGTGAGTGGACAT 59.247 45.455 18.46 0.00 45.30 3.06
631 632 2.156917 ACGAGTAATCGTGAGTGGACA 58.843 47.619 18.46 0.00 45.30 4.02
632 633 2.915738 ACGAGTAATCGTGAGTGGAC 57.084 50.000 18.46 0.00 45.30 4.02
633 634 3.079578 AGAACGAGTAATCGTGAGTGGA 58.920 45.455 19.91 0.00 46.41 4.02
634 635 3.489180 AGAACGAGTAATCGTGAGTGG 57.511 47.619 19.91 0.00 46.41 4.00
635 636 4.227538 ACAAGAACGAGTAATCGTGAGTG 58.772 43.478 19.91 17.74 46.41 3.51
636 637 4.500603 ACAAGAACGAGTAATCGTGAGT 57.499 40.909 19.91 12.09 46.41 3.41
637 638 5.388111 TGTACAAGAACGAGTAATCGTGAG 58.612 41.667 19.91 11.48 46.41 3.51
638 639 5.361135 TGTACAAGAACGAGTAATCGTGA 57.639 39.130 19.91 0.00 46.41 4.35
639 640 5.498700 GCATGTACAAGAACGAGTAATCGTG 60.499 44.000 19.91 9.11 46.41 4.35
641 642 4.798907 AGCATGTACAAGAACGAGTAATCG 59.201 41.667 11.58 11.58 39.31 3.34
642 643 6.648725 AAGCATGTACAAGAACGAGTAATC 57.351 37.500 0.00 0.00 0.00 1.75
643 644 6.874134 AGAAAGCATGTACAAGAACGAGTAAT 59.126 34.615 0.00 0.00 0.00 1.89
644 645 6.145534 CAGAAAGCATGTACAAGAACGAGTAA 59.854 38.462 0.00 0.00 0.00 2.24
645 646 5.633601 CAGAAAGCATGTACAAGAACGAGTA 59.366 40.000 0.00 0.00 0.00 2.59
646 647 4.449068 CAGAAAGCATGTACAAGAACGAGT 59.551 41.667 0.00 0.00 0.00 4.18
647 648 4.667668 GCAGAAAGCATGTACAAGAACGAG 60.668 45.833 0.00 0.00 44.79 4.18
648 649 3.186409 GCAGAAAGCATGTACAAGAACGA 59.814 43.478 0.00 0.00 44.79 3.85
649 650 3.482786 GCAGAAAGCATGTACAAGAACG 58.517 45.455 0.00 0.00 44.79 3.95
662 663 7.229506 ACCATATCTTTATACAAGGCAGAAAGC 59.770 37.037 0.00 0.00 44.65 3.51
663 664 8.682936 ACCATATCTTTATACAAGGCAGAAAG 57.317 34.615 0.00 0.00 0.00 2.62
664 665 9.555727 GTACCATATCTTTATACAAGGCAGAAA 57.444 33.333 0.00 0.00 0.00 2.52
665 666 7.870954 CGTACCATATCTTTATACAAGGCAGAA 59.129 37.037 0.00 0.00 0.00 3.02
666 667 7.375834 CGTACCATATCTTTATACAAGGCAGA 58.624 38.462 0.00 0.00 0.00 4.26
667 668 6.090898 GCGTACCATATCTTTATACAAGGCAG 59.909 42.308 0.00 0.00 0.00 4.85
668 669 5.929992 GCGTACCATATCTTTATACAAGGCA 59.070 40.000 0.00 0.00 0.00 4.75
669 670 5.350640 GGCGTACCATATCTTTATACAAGGC 59.649 44.000 0.00 0.00 35.26 4.35
670 671 6.460781 TGGCGTACCATATCTTTATACAAGG 58.539 40.000 0.00 0.00 42.67 3.61
688 689 2.095314 TCGAAAGTACGTCAATGGCGTA 60.095 45.455 16.56 16.56 42.85 4.42
689 690 1.065358 CGAAAGTACGTCAATGGCGT 58.935 50.000 19.02 19.02 45.11 5.68
690 691 1.342555 TCGAAAGTACGTCAATGGCG 58.657 50.000 5.42 5.42 34.70 5.69
691 692 3.799137 TTTCGAAAGTACGTCAATGGC 57.201 42.857 6.47 0.00 34.70 4.40
714 715 4.278419 CCCTCTCACCGAACATTTCTTTTT 59.722 41.667 0.00 0.00 0.00 1.94
715 716 3.821033 CCCTCTCACCGAACATTTCTTTT 59.179 43.478 0.00 0.00 0.00 2.27
716 717 3.181443 ACCCTCTCACCGAACATTTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
819 826 2.561037 GGGGTGCACAAAAGGACGG 61.561 63.158 20.43 0.00 0.00 4.79
839 846 1.072852 GGAGAGGAGATGCATGGCC 59.927 63.158 2.46 4.94 0.00 5.36
958 969 1.116308 GGAAGAGAGAGTACAGGGGC 58.884 60.000 0.00 0.00 0.00 5.80
974 985 1.441729 CTGCGCCGATAAGGAGGAA 59.558 57.895 4.18 0.00 45.00 3.36
998 1012 2.186160 TGCACCAAAGTGTCCGCAG 61.186 57.895 0.00 0.00 46.35 5.18
999 1013 2.124529 TGCACCAAAGTGTCCGCA 60.125 55.556 0.00 0.00 46.35 5.69
1266 1289 3.119291 GTTGTCGTAGATGAGCATGGAG 58.881 50.000 0.00 0.00 40.67 3.86
1309 1332 2.742372 GGCGCCGAAGAAGCTTGA 60.742 61.111 12.58 0.00 0.00 3.02
1342 1365 2.437359 GTTGCAGAGGCCGAGCAT 60.437 61.111 18.20 0.00 40.13 3.79
1346 1369 4.680237 CCGTGTTGCAGAGGCCGA 62.680 66.667 0.00 0.00 40.13 5.54
1486 1513 1.112113 ATGCCGTAGACCTTCGTGAT 58.888 50.000 0.00 0.00 0.00 3.06
1533 1560 3.970721 CAGCGGTTGCAGTCATCA 58.029 55.556 0.00 0.00 46.23 3.07
1561 1588 1.753078 TCAGGATGGACGAGACGGG 60.753 63.158 0.00 0.00 36.16 5.28
1789 1848 2.740714 GCCAGCTAGAAACGCGTGG 61.741 63.158 14.98 8.34 0.00 4.94
1813 1872 4.404073 ACAAGAAAACTGTATGGCCACAAA 59.596 37.500 8.16 0.00 0.00 2.83
1978 3888 2.877974 GCTGTGGCGTCGTCGTTTT 61.878 57.895 3.66 0.00 39.49 2.43
2119 4107 2.143594 GACCGAGAAGCACTCACCGT 62.144 60.000 10.61 4.21 45.14 4.83
2190 4197 4.689345 GCTCACAAAGACAAACGGTATAGT 59.311 41.667 0.00 0.00 0.00 2.12
2263 4286 1.761784 AGCCCTTAGAGTGCTCAGATG 59.238 52.381 1.82 0.00 0.00 2.90
2380 4403 4.517285 TGGAAGCATAATCAGTTGGAGAC 58.483 43.478 0.00 0.00 0.00 3.36
2388 4412 7.701078 CAGTTCAGAAAATGGAAGCATAATCAG 59.299 37.037 0.00 0.00 0.00 2.90
2394 4418 5.302568 TGTTCAGTTCAGAAAATGGAAGCAT 59.697 36.000 0.00 0.00 31.48 3.79
2395 4419 4.644234 TGTTCAGTTCAGAAAATGGAAGCA 59.356 37.500 0.00 0.00 31.48 3.91
2396 4420 5.186996 TGTTCAGTTCAGAAAATGGAAGC 57.813 39.130 0.00 0.00 31.48 3.86
2398 4422 6.262049 TCGATTGTTCAGTTCAGAAAATGGAA 59.738 34.615 0.00 0.00 31.48 3.53
2399 4423 5.762711 TCGATTGTTCAGTTCAGAAAATGGA 59.237 36.000 0.00 0.00 31.48 3.41
2401 4425 6.662616 AGTCGATTGTTCAGTTCAGAAAATG 58.337 36.000 0.00 0.00 0.00 2.32
2403 4427 6.458206 CCAAGTCGATTGTTCAGTTCAGAAAA 60.458 38.462 0.00 0.00 37.17 2.29
2715 4913 4.142708 TGAACATGTGCAAATCCATCGTAC 60.143 41.667 3.25 0.00 0.00 3.67
2718 4916 3.127376 TCTGAACATGTGCAAATCCATCG 59.873 43.478 8.18 0.00 0.00 3.84
2719 4917 4.707030 TCTGAACATGTGCAAATCCATC 57.293 40.909 8.18 0.00 0.00 3.51
2724 4922 3.119245 GCAGGATCTGAACATGTGCAAAT 60.119 43.478 8.18 0.00 32.44 2.32
2725 4923 2.229543 GCAGGATCTGAACATGTGCAAA 59.770 45.455 8.18 0.00 32.44 3.68
3134 5387 1.469308 CCCGCGATGATCTCTAGTACC 59.531 57.143 8.23 0.00 0.00 3.34
3140 5393 3.034878 CGACCCGCGATGATCTCT 58.965 61.111 8.23 0.00 44.57 3.10
3216 5469 4.324991 GGTCGGTCACACCACCCC 62.325 72.222 0.00 0.00 38.47 4.95
3223 5476 0.320683 CATGAGCAAGGTCGGTCACA 60.321 55.000 0.00 0.00 45.44 3.58
3224 5477 0.037326 TCATGAGCAAGGTCGGTCAC 60.037 55.000 0.00 0.00 45.44 3.67
3225 5478 0.037326 GTCATGAGCAAGGTCGGTCA 60.037 55.000 0.00 0.00 46.56 4.02
3226 5479 1.078759 CGTCATGAGCAAGGTCGGTC 61.079 60.000 0.00 0.00 0.00 4.79
3227 5480 1.079819 CGTCATGAGCAAGGTCGGT 60.080 57.895 0.00 0.00 0.00 4.69
3228 5481 1.811266 CCGTCATGAGCAAGGTCGG 60.811 63.158 0.00 0.00 0.00 4.79
3229 5482 0.179100 ATCCGTCATGAGCAAGGTCG 60.179 55.000 0.00 0.00 0.00 4.79
3264 5525 7.309499 CGCAGGGGCATAATTATTAACCAATTA 60.309 37.037 0.00 6.56 41.24 1.40
3265 5526 6.518200 CGCAGGGGCATAATTATTAACCAATT 60.518 38.462 0.00 3.21 41.24 2.32
3267 5528 4.279671 CGCAGGGGCATAATTATTAACCAA 59.720 41.667 0.00 0.00 41.24 3.67
3268 5529 3.823873 CGCAGGGGCATAATTATTAACCA 59.176 43.478 0.00 0.00 41.24 3.67
3269 5530 3.824443 ACGCAGGGGCATAATTATTAACC 59.176 43.478 0.00 0.00 41.24 2.85
3270 5531 4.277423 ACACGCAGGGGCATAATTATTAAC 59.723 41.667 0.00 0.00 41.24 2.01
3271 5532 4.465886 ACACGCAGGGGCATAATTATTAA 58.534 39.130 0.00 0.00 41.24 1.40
3272 5533 4.093472 ACACGCAGGGGCATAATTATTA 57.907 40.909 0.00 0.00 41.24 0.98
3273 5534 2.944129 ACACGCAGGGGCATAATTATT 58.056 42.857 0.00 0.00 41.24 1.40
3274 5535 2.656947 ACACGCAGGGGCATAATTAT 57.343 45.000 0.00 0.00 41.24 1.28
3330 5700 3.197790 CAGCCATCGAGCAACCCG 61.198 66.667 0.00 0.00 34.23 5.28
3642 6012 2.378547 AGCCCAGAACACCCTATTTTCA 59.621 45.455 0.00 0.00 0.00 2.69
3700 6070 2.110420 GCCTACATACGGCCCACC 59.890 66.667 0.00 0.00 41.73 4.61
3766 6136 6.346199 GCATTTCTGCGGAAAAATTAAACGAA 60.346 34.615 23.89 0.00 43.51 3.85
3795 6167 3.557185 AGGTGTTTTCGGTCGACTAAAAC 59.443 43.478 31.06 31.06 41.35 2.43
3819 6191 9.857656 ATATCAATGATTACACCAACTCAAGAT 57.142 29.630 0.00 0.00 0.00 2.40
3857 6229 8.988934 AGAACTTGAAGAAAAACAAGGAAAAAC 58.011 29.630 0.00 0.00 45.03 2.43
3869 6241 8.237811 AGCCTATTTTGAGAACTTGAAGAAAA 57.762 30.769 0.00 0.00 0.00 2.29
3875 6247 6.241207 CGAAAGCCTATTTTGAGAACTTGA 57.759 37.500 0.00 0.00 0.00 3.02
3893 6265 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
3894 6266 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
3895 6267 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
3912 6284 9.751542 GCTATGTACTCTGTGATGTTACTTTAT 57.248 33.333 0.00 0.00 0.00 1.40
3913 6285 8.967918 AGCTATGTACTCTGTGATGTTACTTTA 58.032 33.333 0.00 0.00 0.00 1.85
3914 6286 7.761704 CAGCTATGTACTCTGTGATGTTACTTT 59.238 37.037 0.00 0.00 0.00 2.66
3915 6287 7.122799 TCAGCTATGTACTCTGTGATGTTACTT 59.877 37.037 0.00 0.00 0.00 2.24
3916 6288 6.603599 TCAGCTATGTACTCTGTGATGTTACT 59.396 38.462 0.00 0.00 0.00 2.24
3917 6289 6.796426 TCAGCTATGTACTCTGTGATGTTAC 58.204 40.000 0.00 0.00 0.00 2.50
3918 6290 7.093945 TGTTCAGCTATGTACTCTGTGATGTTA 60.094 37.037 0.00 0.00 0.00 2.41
3919 6291 5.921962 TCAGCTATGTACTCTGTGATGTT 57.078 39.130 0.00 0.00 0.00 2.71
3920 6292 5.185828 TGTTCAGCTATGTACTCTGTGATGT 59.814 40.000 0.00 0.00 0.00 3.06
3921 6293 5.654497 TGTTCAGCTATGTACTCTGTGATG 58.346 41.667 0.00 0.00 0.00 3.07
3922 6294 5.921962 TGTTCAGCTATGTACTCTGTGAT 57.078 39.130 0.00 0.00 0.00 3.06
3923 6295 5.722021 TTGTTCAGCTATGTACTCTGTGA 57.278 39.130 0.00 0.00 0.00 3.58
3924 6296 7.035612 TGTATTGTTCAGCTATGTACTCTGTG 58.964 38.462 0.00 0.00 0.00 3.66
3925 6297 7.170393 TGTATTGTTCAGCTATGTACTCTGT 57.830 36.000 0.00 0.00 0.00 3.41
3926 6298 9.404348 CTATGTATTGTTCAGCTATGTACTCTG 57.596 37.037 0.00 0.00 0.00 3.35
3927 6299 9.137459 ACTATGTATTGTTCAGCTATGTACTCT 57.863 33.333 0.00 0.00 0.00 3.24
3928 6300 9.186323 CACTATGTATTGTTCAGCTATGTACTC 57.814 37.037 0.00 0.00 0.00 2.59
3929 6301 8.144478 CCACTATGTATTGTTCAGCTATGTACT 58.856 37.037 0.00 0.00 0.00 2.73
3930 6302 8.141909 TCCACTATGTATTGTTCAGCTATGTAC 58.858 37.037 0.00 0.00 0.00 2.90
3931 6303 8.245195 TCCACTATGTATTGTTCAGCTATGTA 57.755 34.615 0.00 0.00 0.00 2.29
3932 6304 7.124573 TCCACTATGTATTGTTCAGCTATGT 57.875 36.000 0.00 0.00 0.00 2.29
3933 6305 7.307632 GCTTCCACTATGTATTGTTCAGCTATG 60.308 40.741 0.00 0.00 0.00 2.23
3934 6306 6.708054 GCTTCCACTATGTATTGTTCAGCTAT 59.292 38.462 0.00 0.00 0.00 2.97
3935 6307 6.049149 GCTTCCACTATGTATTGTTCAGCTA 58.951 40.000 0.00 0.00 0.00 3.32
3936 6308 4.878397 GCTTCCACTATGTATTGTTCAGCT 59.122 41.667 0.00 0.00 0.00 4.24
3937 6309 4.878397 AGCTTCCACTATGTATTGTTCAGC 59.122 41.667 0.00 0.00 0.00 4.26
3938 6310 6.237942 CGAAGCTTCCACTATGTATTGTTCAG 60.238 42.308 20.62 0.00 0.00 3.02
3939 6311 5.580691 CGAAGCTTCCACTATGTATTGTTCA 59.419 40.000 20.62 0.00 0.00 3.18
3940 6312 5.006746 CCGAAGCTTCCACTATGTATTGTTC 59.993 44.000 20.62 0.00 0.00 3.18
3941 6313 4.876107 CCGAAGCTTCCACTATGTATTGTT 59.124 41.667 20.62 0.00 0.00 2.83
3942 6314 4.442706 CCGAAGCTTCCACTATGTATTGT 58.557 43.478 20.62 0.00 0.00 2.71
3943 6315 3.809832 CCCGAAGCTTCCACTATGTATTG 59.190 47.826 20.62 1.98 0.00 1.90
3944 6316 3.709653 TCCCGAAGCTTCCACTATGTATT 59.290 43.478 20.62 0.00 0.00 1.89
3945 6317 3.305720 TCCCGAAGCTTCCACTATGTAT 58.694 45.455 20.62 0.00 0.00 2.29
3946 6318 2.693591 CTCCCGAAGCTTCCACTATGTA 59.306 50.000 20.62 0.00 0.00 2.29
3947 6319 1.482593 CTCCCGAAGCTTCCACTATGT 59.517 52.381 20.62 0.00 0.00 2.29
3948 6320 1.202580 CCTCCCGAAGCTTCCACTATG 60.203 57.143 20.62 5.39 0.00 2.23
3949 6321 1.123928 CCTCCCGAAGCTTCCACTAT 58.876 55.000 20.62 0.00 0.00 2.12
3950 6322 0.976073 CCCTCCCGAAGCTTCCACTA 60.976 60.000 20.62 3.34 0.00 2.74
3951 6323 2.294078 CCCTCCCGAAGCTTCCACT 61.294 63.158 20.62 0.00 0.00 4.00
3952 6324 2.269241 CCCTCCCGAAGCTTCCAC 59.731 66.667 20.62 0.00 0.00 4.02
3975 6347 0.685097 TGGGCTACTGCTTCGTCTTT 59.315 50.000 0.00 0.00 39.59 2.52
4021 6396 2.520982 TACCAGAGCGCGCCCTAT 60.521 61.111 30.33 15.73 0.00 2.57
4032 6407 2.228480 GGCCCCACAAGGTACCAGA 61.228 63.158 15.94 0.00 0.00 3.86
4091 6467 6.433093 TCCCTAGTAGGTTTTCTGATTTTTGC 59.567 38.462 15.26 0.00 31.93 3.68
4102 6478 4.695606 TCATGGACTCCCTAGTAGGTTTT 58.304 43.478 15.26 0.00 35.56 2.43
4167 6543 1.635487 CCAGAAAAGGTCCCCAGATGA 59.365 52.381 0.00 0.00 0.00 2.92
4199 6576 1.475751 CCTCTGTGATTGAATCCCCCG 60.476 57.143 2.26 0.00 0.00 5.73
4299 6677 1.490910 TCGAGAGAGACAGGAGCCATA 59.509 52.381 0.00 0.00 34.84 2.74
4338 6716 5.312079 AGAACTCCAAGAACATCAAAGAGG 58.688 41.667 0.00 0.00 0.00 3.69
4342 6720 8.690203 TCAAATAGAACTCCAAGAACATCAAA 57.310 30.769 0.00 0.00 0.00 2.69
4364 6742 6.815641 ACACACTGCAAAAACAATTACATCAA 59.184 30.769 0.00 0.00 0.00 2.57
4375 6753 3.120373 CCCAACAAACACACTGCAAAAAC 60.120 43.478 0.00 0.00 0.00 2.43
4400 6781 8.850156 TCTGATCATAAACTCATGACTAATCGA 58.150 33.333 0.00 0.00 37.74 3.59
4407 6788 9.585099 GGATAGATCTGATCATAAACTCATGAC 57.415 37.037 19.12 0.00 37.74 3.06
4498 6880 5.744887 GCCTAACCAAATCAATAGATCGGGA 60.745 44.000 0.00 0.00 33.72 5.14
4499 6881 4.455877 GCCTAACCAAATCAATAGATCGGG 59.544 45.833 0.00 0.00 34.95 5.14
4519 6901 6.264067 GCAAGATAAATCAATCTAGTTGGCCT 59.736 38.462 3.32 0.00 38.39 5.19
4550 6932 2.242043 CCCATCACAAAGCACCTCTTT 58.758 47.619 0.00 0.00 45.43 2.52
4569 6953 2.380084 TAGCACCACAAGATCGAACC 57.620 50.000 0.00 0.00 0.00 3.62
4588 6972 3.713764 CTCCCTTTCTGTCACTGGGATAT 59.286 47.826 0.00 0.00 44.88 1.63
4589 6973 3.107601 CTCCCTTTCTGTCACTGGGATA 58.892 50.000 0.00 0.00 44.88 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.