Multiple sequence alignment - TraesCS1D01G273400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G273400 chr1D 100.000 3987 0 0 1 3987 367843723 367847709 0.000000e+00 7363.0
1 TraesCS1D01G273400 chr1D 83.127 403 50 11 350 737 454448 454847 6.340000e-93 351.0
2 TraesCS1D01G273400 chr1D 82.339 419 44 20 350 747 217293445 217293854 1.780000e-88 337.0
3 TraesCS1D01G273400 chr1D 81.043 422 44 14 350 739 249746218 249746635 1.800000e-78 303.0
4 TraesCS1D01G273400 chr1D 80.864 324 42 9 4 310 412285431 412285111 1.850000e-58 237.0
5 TraesCS1D01G273400 chr1D 95.238 42 2 0 2986 3027 367846668 367846709 2.570000e-07 67.6
6 TraesCS1D01G273400 chr1D 95.238 42 2 0 2946 2987 367846708 367846749 2.570000e-07 67.6
7 TraesCS1D01G273400 chr1A 87.137 1034 91 16 1399 2403 467182263 467183283 0.000000e+00 1134.0
8 TraesCS1D01G273400 chr1A 82.278 711 58 33 846 1505 467181368 467182061 1.620000e-153 553.0
9 TraesCS1D01G273400 chr1A 87.593 403 24 10 2700 3101 467183301 467183678 1.020000e-120 444.0
10 TraesCS1D01G273400 chr1A 82.021 584 33 23 3431 3987 467184007 467184545 7.920000e-117 431.0
11 TraesCS1D01G273400 chr1A 92.391 92 4 1 758 846 467163740 467163831 1.160000e-25 128.0
12 TraesCS1D01G273400 chr1A 95.238 42 2 0 2986 3027 467183523 467183564 2.570000e-07 67.6
13 TraesCS1D01G273400 chr1B 88.795 589 28 21 3418 3987 492305699 492306268 0.000000e+00 688.0
14 TraesCS1D01G273400 chr1B 90.173 519 31 6 806 1318 492302143 492302647 0.000000e+00 658.0
15 TraesCS1D01G273400 chr1B 85.312 640 55 20 1506 2140 492304027 492304632 3.380000e-175 625.0
16 TraesCS1D01G273400 chr1B 88.372 344 21 7 2986 3321 492305336 492305668 2.890000e-106 396.0
17 TraesCS1D01G273400 chr1B 79.612 412 62 13 4 396 330837090 330836682 3.920000e-70 276.0
18 TraesCS1D01G273400 chr1B 84.436 257 34 6 487 740 395979558 395979811 8.560000e-62 248.0
19 TraesCS1D01G273400 chr1B 80.597 335 44 12 2659 2987 492305058 492305377 5.150000e-59 239.0
20 TraesCS1D01G273400 chr1B 80.247 324 45 14 1 310 22716568 22716250 4.010000e-55 226.0
21 TraesCS1D01G273400 chr1B 80.150 267 41 9 1 257 313485536 313485272 5.260000e-44 189.0
22 TraesCS1D01G273400 chr1B 94.048 84 2 1 1390 1470 492303791 492303874 1.500000e-24 124.0
23 TraesCS1D01G273400 chrUn 78.984 728 86 26 60 739 35731989 35731281 6.120000e-118 435.0
24 TraesCS1D01G273400 chrUn 78.984 728 86 26 60 739 242150322 242151030 6.120000e-118 435.0
25 TraesCS1D01G273400 chr2D 82.751 458 53 21 293 737 645008691 645008247 6.250000e-103 385.0
26 TraesCS1D01G273400 chr2D 79.938 324 41 10 7 310 575943122 575942803 2.410000e-52 217.0
27 TraesCS1D01G273400 chr5D 82.468 462 54 18 293 737 475241637 475241186 2.910000e-101 379.0
28 TraesCS1D01G273400 chr5D 82.064 407 51 13 3 390 495198988 495199391 1.070000e-85 327.0
29 TraesCS1D01G273400 chr2B 81.092 476 59 17 293 739 26958785 26958312 6.340000e-93 351.0
30 TraesCS1D01G273400 chr2B 87.444 223 20 5 293 512 642447999 642448216 2.380000e-62 250.0
31 TraesCS1D01G273400 chr2B 80.062 321 53 8 1 314 10223131 10222815 1.110000e-55 228.0
32 TraesCS1D01G273400 chr7D 82.512 406 49 12 350 736 80510941 80511343 1.780000e-88 337.0
33 TraesCS1D01G273400 chr7D 85.714 266 33 3 2398 2662 436499204 436498943 3.920000e-70 276.0
34 TraesCS1D01G273400 chr7D 85.714 259 34 3 2405 2662 204871003 204870747 1.830000e-68 270.0
35 TraesCS1D01G273400 chr7D 84.672 274 37 5 2392 2663 388720274 388720004 6.570000e-68 268.0
36 TraesCS1D01G273400 chr7D 87.719 228 22 4 516 743 25328987 25328766 1.100000e-65 261.0
37 TraesCS1D01G273400 chr7D 89.950 199 16 4 293 487 484369207 484369009 1.840000e-63 254.0
38 TraesCS1D01G273400 chr7D 84.375 224 28 5 293 511 406326755 406326976 3.120000e-51 213.0
39 TraesCS1D01G273400 chr3D 89.098 266 23 4 2402 2662 168185649 168185913 3.840000e-85 326.0
40 TraesCS1D01G273400 chr3D 83.628 226 28 9 293 512 406399441 406399663 1.880000e-48 204.0
41 TraesCS1D01G273400 chr3D 81.743 241 31 7 2 230 34693297 34693058 5.260000e-44 189.0
42 TraesCS1D01G273400 chr3D 90.076 131 10 1 993 1120 484811317 484811187 2.460000e-37 167.0
43 TraesCS1D01G273400 chr3A 87.218 266 26 4 2402 2662 200812847 200812585 3.010000e-76 296.0
44 TraesCS1D01G273400 chr3A 86.034 179 12 8 950 1120 627826876 627826703 3.170000e-41 180.0
45 TraesCS1D01G273400 chr2A 79.545 440 70 9 1 421 78589576 78590014 3.010000e-76 296.0
46 TraesCS1D01G273400 chr2A 80.097 206 36 4 24 225 14571800 14571596 8.930000e-32 148.0
47 TraesCS1D01G273400 chr6D 86.364 264 34 2 2402 2664 123159231 123158969 1.810000e-73 287.0
48 TraesCS1D01G273400 chr6B 87.755 245 29 1 2419 2662 583282602 583282358 6.520000e-73 285.0
49 TraesCS1D01G273400 chr6B 85.714 266 34 3 2402 2664 217169259 217168995 1.090000e-70 278.0
50 TraesCS1D01G273400 chr6B 79.177 413 56 15 350 739 688887914 688888319 3.950000e-65 259.0
51 TraesCS1D01G273400 chr6B 83.929 224 27 7 293 512 188677578 188677796 5.220000e-49 206.0
52 TraesCS1D01G273400 chr3B 88.235 238 24 4 2424 2659 243239350 243239585 8.440000e-72 281.0
53 TraesCS1D01G273400 chr3B 90.076 131 10 1 993 1120 647548608 647548478 2.460000e-37 167.0
54 TraesCS1D01G273400 chr4D 79.714 419 59 12 1 396 69219886 69219471 3.030000e-71 279.0
55 TraesCS1D01G273400 chr4D 87.892 223 16 7 293 510 400889050 400888834 6.610000e-63 252.0
56 TraesCS1D01G273400 chr4B 79.665 418 48 13 350 737 658965464 658965874 2.360000e-67 267.0
57 TraesCS1D01G273400 chr7B 81.150 313 37 17 6 303 592626427 592626732 8.620000e-57 231.0
58 TraesCS1D01G273400 chr7A 86.301 219 23 5 293 511 70750533 70750744 8.620000e-57 231.0
59 TraesCS1D01G273400 chr5B 84.583 240 30 6 151 389 670027197 670026964 8.620000e-57 231.0
60 TraesCS1D01G273400 chr6A 79.876 323 54 7 1 315 468255914 468256233 4.010000e-55 226.0
61 TraesCS1D01G273400 chr5A 85.586 222 18 8 293 511 558237833 558237623 1.870000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G273400 chr1D 367843723 367847709 3986 False 2499.40 7363 96.825333 1 3987 3 chr1D.!!$F4 3986
1 TraesCS1D01G273400 chr1A 467181368 467184545 3177 False 525.92 1134 86.853400 846 3987 5 chr1A.!!$F2 3141
2 TraesCS1D01G273400 chr1B 492302143 492306268 4125 False 455.00 688 87.882833 806 3987 6 chr1B.!!$F2 3181
3 TraesCS1D01G273400 chrUn 35731281 35731989 708 True 435.00 435 78.984000 60 739 1 chrUn.!!$R1 679
4 TraesCS1D01G273400 chrUn 242150322 242151030 708 False 435.00 435 78.984000 60 739 1 chrUn.!!$F1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 530 0.034896 GTGCCTCTCACGGAAGGAAA 59.965 55.0 0.00 0.0 35.76 3.13 F
746 794 0.108138 CTAGTTGCTCCCCCGAACAG 60.108 60.0 0.00 0.0 0.00 3.16 F
1356 2467 0.250901 GTGCGGGGCCTCATATGATT 60.251 55.0 1.96 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 3899 0.869730 CGGAGTAAACACAAACGGGG 59.130 55.000 0.00 0.0 0.0 5.73 R
2646 4335 4.543689 TCGTGTATACTCCCTCCATTTCT 58.456 43.478 4.17 0.0 0.0 2.52 R
3350 5185 0.103572 TGTTTATACTCCCCGCTCGC 59.896 55.000 0.00 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.185413 GTGCCTCTCGCGAAATCA 57.815 55.556 11.33 2.93 42.08 2.57
20 21 1.710339 GTGCCTCTCGCGAAATCAC 59.290 57.895 11.33 12.02 42.08 3.06
21 22 1.014044 GTGCCTCTCGCGAAATCACA 61.014 55.000 11.33 2.03 42.08 3.58
22 23 0.320334 TGCCTCTCGCGAAATCACAA 60.320 50.000 11.33 0.00 42.08 3.33
23 24 0.095417 GCCTCTCGCGAAATCACAAC 59.905 55.000 11.33 0.00 0.00 3.32
24 25 0.721718 CCTCTCGCGAAATCACAACC 59.278 55.000 11.33 0.00 0.00 3.77
25 26 1.428448 CTCTCGCGAAATCACAACCA 58.572 50.000 11.33 0.00 0.00 3.67
26 27 2.002586 CTCTCGCGAAATCACAACCAT 58.997 47.619 11.33 0.00 0.00 3.55
27 28 1.731709 TCTCGCGAAATCACAACCATG 59.268 47.619 11.33 0.00 0.00 3.66
28 29 0.167908 TCGCGAAATCACAACCATGC 59.832 50.000 6.20 0.00 0.00 4.06
29 30 0.798009 CGCGAAATCACAACCATGCC 60.798 55.000 0.00 0.00 0.00 4.40
30 31 0.527565 GCGAAATCACAACCATGCCT 59.472 50.000 0.00 0.00 0.00 4.75
31 32 1.468054 GCGAAATCACAACCATGCCTC 60.468 52.381 0.00 0.00 0.00 4.70
32 33 2.086869 CGAAATCACAACCATGCCTCT 58.913 47.619 0.00 0.00 0.00 3.69
33 34 2.096496 CGAAATCACAACCATGCCTCTC 59.904 50.000 0.00 0.00 0.00 3.20
34 35 1.742761 AATCACAACCATGCCTCTCG 58.257 50.000 0.00 0.00 0.00 4.04
35 36 0.745845 ATCACAACCATGCCTCTCGC 60.746 55.000 0.00 0.00 38.31 5.03
36 37 2.434884 ACAACCATGCCTCTCGCG 60.435 61.111 0.00 0.00 42.08 5.87
37 38 3.197790 CAACCATGCCTCTCGCGG 61.198 66.667 6.13 0.00 42.08 6.46
38 39 3.390521 AACCATGCCTCTCGCGGA 61.391 61.111 6.13 1.01 42.08 5.54
39 40 2.954684 AACCATGCCTCTCGCGGAA 61.955 57.895 6.13 0.00 42.08 4.30
40 41 2.587194 CCATGCCTCTCGCGGAAG 60.587 66.667 6.13 3.71 42.08 3.46
41 42 2.587194 CATGCCTCTCGCGGAAGG 60.587 66.667 19.53 19.53 42.08 3.46
42 43 2.759973 ATGCCTCTCGCGGAAGGA 60.760 61.111 25.65 14.06 42.08 3.36
43 44 2.359169 ATGCCTCTCGCGGAAGGAA 61.359 57.895 25.65 18.60 42.08 3.36
44 45 1.899437 ATGCCTCTCGCGGAAGGAAA 61.899 55.000 25.65 15.56 42.08 3.13
45 46 1.375523 GCCTCTCGCGGAAGGAAAA 60.376 57.895 25.65 0.00 0.00 2.29
46 47 0.953960 GCCTCTCGCGGAAGGAAAAA 60.954 55.000 25.65 0.00 0.00 1.94
85 87 2.113860 TCTTTTTCGAGGAGGCATGG 57.886 50.000 0.00 0.00 0.00 3.66
103 105 3.181967 CCGCGCCTCTCACGAAAG 61.182 66.667 0.00 0.00 0.00 2.62
111 113 1.581934 CTCTCACGAAAGCACAACCA 58.418 50.000 0.00 0.00 0.00 3.67
112 114 1.528586 CTCTCACGAAAGCACAACCAG 59.471 52.381 0.00 0.00 0.00 4.00
122 124 4.379243 ACAACCAGGCCTCTCGCG 62.379 66.667 0.00 0.00 38.94 5.87
143 145 2.210116 GAAGCAAAACCGTGTCTCTCA 58.790 47.619 0.00 0.00 0.00 3.27
160 174 3.264104 TCTCACGGAAGAAACACGTTTT 58.736 40.909 0.00 0.00 39.02 2.43
161 175 3.062909 TCTCACGGAAGAAACACGTTTTG 59.937 43.478 0.00 0.00 39.02 2.44
176 192 6.615566 ACACGTTTTGTTTTCGTTTTCGAGG 61.616 40.000 0.00 0.00 44.59 4.63
218 234 0.249911 AAGCACAACCGTGTCTCTCC 60.250 55.000 0.00 0.00 45.50 3.71
220 236 1.372997 CACAACCGTGTCTCTCCCG 60.373 63.158 0.00 0.00 38.41 5.14
230 246 1.351017 TGTCTCTCCCGGAAGCAAAAT 59.649 47.619 0.73 0.00 0.00 1.82
243 259 2.686558 GCAAAATCGTGCTTCTCACA 57.313 45.000 0.00 0.00 45.92 3.58
244 260 2.578495 GCAAAATCGTGCTTCTCACAG 58.422 47.619 0.00 0.00 45.92 3.66
390 411 2.251642 GCAAAACCGTGCCTCTCGT 61.252 57.895 0.00 0.00 38.66 4.18
392 413 0.878523 CAAAACCGTGCCTCTCGTGA 60.879 55.000 0.00 0.00 0.00 4.35
396 417 1.738099 CCGTGCCTCTCGTGAAAGG 60.738 63.158 0.00 0.00 35.65 3.11
397 418 1.738099 CGTGCCTCTCGTGAAAGGG 60.738 63.158 0.00 0.00 32.98 3.95
458 503 0.741221 GGCCTTGACTCTCGCGAAAT 60.741 55.000 11.33 0.00 0.00 2.17
469 514 0.384974 TCGCGAAATCAAAACCGTGC 60.385 50.000 6.20 0.00 33.21 5.34
475 520 2.270352 AATCAAAACCGTGCCTCTCA 57.730 45.000 0.00 0.00 0.00 3.27
484 529 1.671742 GTGCCTCTCACGGAAGGAA 59.328 57.895 0.00 0.00 35.76 3.36
485 530 0.034896 GTGCCTCTCACGGAAGGAAA 59.965 55.000 0.00 0.00 35.76 3.13
486 531 0.762418 TGCCTCTCACGGAAGGAAAA 59.238 50.000 0.00 0.00 0.00 2.29
487 532 1.142060 TGCCTCTCACGGAAGGAAAAA 59.858 47.619 0.00 0.00 0.00 1.94
549 596 4.419522 TTCAAAAGCTAATGAAGACCGC 57.580 40.909 9.40 0.00 32.14 5.68
551 598 3.436704 TCAAAAGCTAATGAAGACCGCTG 59.563 43.478 0.00 0.00 0.00 5.18
552 599 3.334583 AAAGCTAATGAAGACCGCTGA 57.665 42.857 0.00 0.00 0.00 4.26
557 604 4.083271 AGCTAATGAAGACCGCTGAAAAAC 60.083 41.667 0.00 0.00 0.00 2.43
559 606 0.941542 TGAAGACCGCTGAAAAACCG 59.058 50.000 0.00 0.00 0.00 4.44
563 610 2.227194 AGACCGCTGAAAAACCGAAAT 58.773 42.857 0.00 0.00 0.00 2.17
564 611 2.621526 AGACCGCTGAAAAACCGAAATT 59.378 40.909 0.00 0.00 0.00 1.82
601 649 2.512485 AAACCGTTTAAAAAGCCGGG 57.488 45.000 16.53 0.00 44.57 5.73
624 672 5.176039 GGAACGCGTGTGGAAAAATAAAAAT 59.824 36.000 14.98 0.00 0.00 1.82
625 673 6.362820 GGAACGCGTGTGGAAAAATAAAAATA 59.637 34.615 14.98 0.00 0.00 1.40
626 674 7.062488 GGAACGCGTGTGGAAAAATAAAAATAT 59.938 33.333 14.98 0.00 0.00 1.28
687 735 1.446099 CTTAGAGCGCGCCAAGTGA 60.446 57.895 30.33 8.44 0.00 3.41
696 744 1.737735 CGCCAAGTGACGCTGATCA 60.738 57.895 0.00 0.00 0.00 2.92
700 748 2.079158 CCAAGTGACGCTGATCATTGT 58.921 47.619 0.00 0.00 0.00 2.71
707 755 0.935898 CGCTGATCATTGTGAGGCTC 59.064 55.000 7.79 7.79 0.00 4.70
727 775 1.446272 CGAAGGAGCCCTCGTCAAC 60.446 63.158 0.00 0.00 30.89 3.18
739 787 0.606604 TCGTCAACTAGTTGCTCCCC 59.393 55.000 27.49 12.87 40.24 4.81
740 788 0.391263 CGTCAACTAGTTGCTCCCCC 60.391 60.000 27.49 11.39 40.24 5.40
741 789 0.391263 GTCAACTAGTTGCTCCCCCG 60.391 60.000 27.49 4.98 40.24 5.73
742 790 0.543410 TCAACTAGTTGCTCCCCCGA 60.543 55.000 27.49 7.88 40.24 5.14
743 791 0.323629 CAACTAGTTGCTCCCCCGAA 59.676 55.000 22.03 0.00 33.45 4.30
744 792 0.323957 AACTAGTTGCTCCCCCGAAC 59.676 55.000 7.48 0.00 0.00 3.95
745 793 0.834687 ACTAGTTGCTCCCCCGAACA 60.835 55.000 0.00 0.00 0.00 3.18
746 794 0.108138 CTAGTTGCTCCCCCGAACAG 60.108 60.000 0.00 0.00 0.00 3.16
747 795 1.550130 TAGTTGCTCCCCCGAACAGG 61.550 60.000 0.00 0.00 40.63 4.00
748 796 2.528127 TTGCTCCCCCGAACAGGA 60.528 61.111 0.00 0.00 45.00 3.86
751 799 2.685380 CTCCCCCGAACAGGAGCT 60.685 66.667 0.00 0.00 43.11 4.09
752 800 2.683933 TCCCCCGAACAGGAGCTC 60.684 66.667 4.71 4.71 45.00 4.09
753 801 3.787001 CCCCCGAACAGGAGCTCC 61.787 72.222 26.22 26.22 45.00 4.70
754 802 3.787001 CCCCGAACAGGAGCTCCC 61.787 72.222 29.54 12.87 45.00 4.30
755 803 3.787001 CCCGAACAGGAGCTCCCC 61.787 72.222 29.54 14.65 45.00 4.81
756 804 3.787001 CCGAACAGGAGCTCCCCC 61.787 72.222 29.54 14.30 45.00 5.40
781 829 1.378531 CGGGGAGCATCGATTTTTCA 58.621 50.000 0.00 0.00 34.37 2.69
782 830 1.331756 CGGGGAGCATCGATTTTTCAG 59.668 52.381 0.00 0.00 34.37 3.02
783 831 2.369394 GGGGAGCATCGATTTTTCAGT 58.631 47.619 0.00 0.00 34.37 3.41
784 832 2.755103 GGGGAGCATCGATTTTTCAGTT 59.245 45.455 0.00 0.00 34.37 3.16
785 833 3.193479 GGGGAGCATCGATTTTTCAGTTT 59.807 43.478 0.00 0.00 34.37 2.66
786 834 4.168760 GGGAGCATCGATTTTTCAGTTTG 58.831 43.478 0.00 0.00 34.37 2.93
787 835 3.609807 GGAGCATCGATTTTTCAGTTTGC 59.390 43.478 0.00 0.00 34.37 3.68
788 836 4.229096 GAGCATCGATTTTTCAGTTTGCA 58.771 39.130 0.00 0.00 0.00 4.08
789 837 3.983344 AGCATCGATTTTTCAGTTTGCAC 59.017 39.130 0.00 0.00 0.00 4.57
790 838 3.735240 GCATCGATTTTTCAGTTTGCACA 59.265 39.130 0.00 0.00 0.00 4.57
791 839 4.208873 GCATCGATTTTTCAGTTTGCACAA 59.791 37.500 0.00 0.00 0.00 3.33
792 840 5.610982 GCATCGATTTTTCAGTTTGCACAAG 60.611 40.000 0.00 0.00 0.00 3.16
793 841 4.358851 TCGATTTTTCAGTTTGCACAAGG 58.641 39.130 0.00 0.00 0.00 3.61
794 842 4.097135 TCGATTTTTCAGTTTGCACAAGGA 59.903 37.500 0.00 0.00 0.00 3.36
795 843 4.803088 CGATTTTTCAGTTTGCACAAGGAA 59.197 37.500 0.00 0.00 0.00 3.36
796 844 5.051508 CGATTTTTCAGTTTGCACAAGGAAG 60.052 40.000 0.00 0.00 0.00 3.46
797 845 4.799564 TTTTCAGTTTGCACAAGGAAGT 57.200 36.364 0.00 0.00 0.00 3.01
798 846 5.906113 TTTTCAGTTTGCACAAGGAAGTA 57.094 34.783 0.00 0.00 0.00 2.24
799 847 5.906113 TTTCAGTTTGCACAAGGAAGTAA 57.094 34.783 0.00 0.00 0.00 2.24
800 848 6.463995 TTTCAGTTTGCACAAGGAAGTAAT 57.536 33.333 0.00 0.00 0.00 1.89
801 849 7.575414 TTTCAGTTTGCACAAGGAAGTAATA 57.425 32.000 0.00 0.00 0.00 0.98
802 850 7.759489 TTCAGTTTGCACAAGGAAGTAATAT 57.241 32.000 0.00 0.00 0.00 1.28
803 851 7.144722 TCAGTTTGCACAAGGAAGTAATATG 57.855 36.000 0.00 0.00 0.00 1.78
804 852 6.150976 TCAGTTTGCACAAGGAAGTAATATGG 59.849 38.462 0.00 0.00 0.00 2.74
807 855 3.053693 TGCACAAGGAAGTAATATGGGCT 60.054 43.478 0.00 0.00 40.96 5.19
835 886 7.340743 ACATATTAGCTGAGTAGTAGCCCATAG 59.659 40.741 0.00 0.00 42.07 2.23
888 939 5.683249 GCCCAAGTAGGTTGTATACTGTACC 60.683 48.000 4.17 8.96 33.78 3.34
940 993 1.355066 CCGCGGAAGTGAAAGAGCTC 61.355 60.000 24.07 5.27 46.66 4.09
941 994 1.678269 CGCGGAAGTGAAAGAGCTCG 61.678 60.000 8.37 0.00 46.66 5.03
970 1023 2.590092 CTAGGGTTTGGGGAGCGG 59.410 66.667 0.00 0.00 0.00 5.52
1125 1178 2.164219 CGGCAAGCTCCATGTATGTTTT 59.836 45.455 0.00 0.00 0.00 2.43
1135 1188 2.871096 TGTATGTTTTCTCGCCCCTT 57.129 45.000 0.00 0.00 0.00 3.95
1146 1199 2.745281 TCTCGCCCCTTTTCGTAATTTG 59.255 45.455 0.00 0.00 0.00 2.32
1187 1257 1.250328 TGCATCAGGGCTCTTGTTTG 58.750 50.000 0.00 0.00 34.04 2.93
1203 1273 2.616376 TGTTTGTGTGTCCAGTATGTGC 59.384 45.455 0.00 0.00 0.00 4.57
1206 1276 4.344359 TTGTGTGTCCAGTATGTGCTTA 57.656 40.909 0.00 0.00 0.00 3.09
1220 1290 0.548031 TGCTTAGGCTGGCTTATGCT 59.452 50.000 9.68 0.47 38.15 3.79
1260 1333 0.603975 GCCTGGAGAAACGAGTTGCT 60.604 55.000 0.00 0.00 0.00 3.91
1340 2451 3.938963 TCAGAACCCGAATTTATCTGTGC 59.061 43.478 0.00 0.00 38.83 4.57
1341 2452 2.936498 AGAACCCGAATTTATCTGTGCG 59.064 45.455 0.00 0.00 0.00 5.34
1355 2466 1.376466 GTGCGGGGCCTCATATGAT 59.624 57.895 1.96 0.00 0.00 2.45
1356 2467 0.250901 GTGCGGGGCCTCATATGATT 60.251 55.000 1.96 0.00 0.00 2.57
1360 2471 2.154462 CGGGGCCTCATATGATTTGTC 58.846 52.381 1.96 0.00 0.00 3.18
1362 2473 2.108952 GGGGCCTCATATGATTTGTCCT 59.891 50.000 5.72 0.00 0.00 3.85
1363 2474 3.437052 GGGGCCTCATATGATTTGTCCTT 60.437 47.826 5.72 0.00 0.00 3.36
1416 2564 7.932120 ATAACTGCTTACTGTAGATAAAGCG 57.068 36.000 7.50 5.59 45.72 4.68
1523 2998 4.406648 TGTAGTCATCTCGGCATTTCAT 57.593 40.909 0.00 0.00 0.00 2.57
1535 3010 5.000591 TCGGCATTTCATTGTAAGACTTCA 58.999 37.500 0.00 0.00 0.00 3.02
1547 3027 5.305585 TGTAAGACTTCAGGTTGCTTAAGG 58.694 41.667 4.29 0.00 0.00 2.69
1595 3075 6.800408 GGCATTATGATCATTTCACTGATTCG 59.200 38.462 14.65 0.00 37.11 3.34
1613 3093 9.647797 ACTGATTCGTTACAATTGTATACTTGA 57.352 29.630 18.69 9.64 0.00 3.02
1683 3163 7.012327 ACGCTGTATTTATGCACTGTTATTCAT 59.988 33.333 0.00 0.00 0.00 2.57
1715 3196 1.162505 TGGGAAATTTGACCCTGGGA 58.837 50.000 22.23 0.00 45.74 4.37
1722 3203 1.444933 TTTGACCCTGGGACATCAGT 58.555 50.000 22.23 0.00 38.20 3.41
1723 3204 0.692476 TTGACCCTGGGACATCAGTG 59.308 55.000 22.23 0.00 38.20 3.66
1849 3330 8.273780 AGATAGTGACTTCCATTGAAATTGAC 57.726 34.615 0.00 0.00 0.00 3.18
1861 3342 7.770433 TCCATTGAAATTGACGATGAGACTTAT 59.230 33.333 12.12 0.00 32.62 1.73
1883 3364 4.556233 TGAGGAGATTGTTCGTGTAAGTG 58.444 43.478 0.00 0.00 0.00 3.16
1890 3371 5.527582 AGATTGTTCGTGTAAGTGCTTTCTT 59.472 36.000 0.00 0.00 0.00 2.52
1945 3427 3.730715 CAGTTTGTTCAAATTCGGACTGC 59.269 43.478 1.33 0.00 0.00 4.40
1947 3429 2.270352 TGTTCAAATTCGGACTGCCT 57.730 45.000 0.00 0.00 0.00 4.75
2028 3516 4.098654 TGCTAAAGATGTGTAGAGCCTCTC 59.901 45.833 0.00 0.00 0.00 3.20
2029 3517 4.340950 GCTAAAGATGTGTAGAGCCTCTCT 59.659 45.833 0.00 0.24 43.83 3.10
2038 3526 0.998928 AGAGCCTCTCTGGAGTGAGA 59.001 55.000 7.20 0.00 39.62 3.27
2103 3591 5.964477 TGGTTCATACTATCCTCAGTTCCTT 59.036 40.000 0.00 0.00 0.00 3.36
2163 3653 2.608090 GCTGCTTAACGATAACCCAGTC 59.392 50.000 0.00 0.00 0.00 3.51
2212 3702 4.265320 GCTTTGTGTTTATAAATGAGCCGC 59.735 41.667 0.31 0.00 0.00 6.53
2325 3817 6.993079 AGCCAGGGTTTTTGAACTTATTTAG 58.007 36.000 0.00 0.00 0.00 1.85
2332 3824 9.589111 GGGTTTTTGAACTTATTTAGTGAAACA 57.411 29.630 0.00 0.00 41.43 2.83
2365 3857 7.907389 ACATATTACTAGATGTACCATGTGGG 58.093 38.462 3.77 0.00 34.57 4.61
2382 3874 2.501723 GTGGGTCATGTCACTATGGTCT 59.498 50.000 0.00 0.00 0.00 3.85
2386 3878 5.163311 TGGGTCATGTCACTATGGTCTATTG 60.163 44.000 0.00 0.00 0.00 1.90
2387 3879 5.300752 GGTCATGTCACTATGGTCTATTGG 58.699 45.833 0.00 0.00 0.00 3.16
2390 3882 5.660864 TCATGTCACTATGGTCTATTGGTCA 59.339 40.000 0.00 0.00 0.00 4.02
2393 3885 5.483937 TGTCACTATGGTCTATTGGTCACTT 59.516 40.000 0.00 0.00 0.00 3.16
2394 3886 6.013725 TGTCACTATGGTCTATTGGTCACTTT 60.014 38.462 0.00 0.00 0.00 2.66
2395 3887 7.179516 TGTCACTATGGTCTATTGGTCACTTTA 59.820 37.037 0.00 0.00 0.00 1.85
2396 3888 7.491696 GTCACTATGGTCTATTGGTCACTTTAC 59.508 40.741 0.00 0.00 0.00 2.01
2397 3889 7.179516 TCACTATGGTCTATTGGTCACTTTACA 59.820 37.037 0.00 0.00 0.00 2.41
2399 3891 8.548877 ACTATGGTCTATTGGTCACTTTACAAT 58.451 33.333 0.00 0.00 38.31 2.71
2400 3892 7.630242 ATGGTCTATTGGTCACTTTACAATG 57.370 36.000 0.00 0.00 36.36 2.82
2401 3893 6.539173 TGGTCTATTGGTCACTTTACAATGT 58.461 36.000 0.00 0.00 36.36 2.71
2402 3894 7.681679 TGGTCTATTGGTCACTTTACAATGTA 58.318 34.615 0.00 0.00 36.36 2.29
2405 3897 8.870879 GTCTATTGGTCACTTTACAATGTACTC 58.129 37.037 0.00 0.00 36.36 2.59
2407 3899 4.901868 TGGTCACTTTACAATGTACTCCC 58.098 43.478 0.00 0.00 0.00 4.30
2425 4114 1.241165 CCCCCGTTTGTGTTTACTCC 58.759 55.000 0.00 0.00 0.00 3.85
2426 4115 0.869730 CCCCGTTTGTGTTTACTCCG 59.130 55.000 0.00 0.00 0.00 4.63
2428 4117 0.938713 CCGTTTGTGTTTACTCCGCA 59.061 50.000 0.00 0.00 0.00 5.69
2429 4118 1.533731 CCGTTTGTGTTTACTCCGCAT 59.466 47.619 0.00 0.00 0.00 4.73
2430 4119 2.737783 CCGTTTGTGTTTACTCCGCATA 59.262 45.455 0.00 0.00 0.00 3.14
2431 4120 3.372822 CCGTTTGTGTTTACTCCGCATAT 59.627 43.478 0.00 0.00 0.00 1.78
2432 4121 4.567558 CCGTTTGTGTTTACTCCGCATATA 59.432 41.667 0.00 0.00 0.00 0.86
2433 4122 5.063691 CCGTTTGTGTTTACTCCGCATATAA 59.936 40.000 0.00 0.00 0.00 0.98
2434 4123 6.182634 CGTTTGTGTTTACTCCGCATATAAG 58.817 40.000 0.00 0.00 0.00 1.73
2435 4124 6.035220 CGTTTGTGTTTACTCCGCATATAAGA 59.965 38.462 0.00 0.00 0.00 2.10
2436 4125 7.254319 CGTTTGTGTTTACTCCGCATATAAGAT 60.254 37.037 0.00 0.00 0.00 2.40
2437 4126 8.395633 GTTTGTGTTTACTCCGCATATAAGATT 58.604 33.333 0.00 0.00 0.00 2.40
2438 4127 8.500753 TTGTGTTTACTCCGCATATAAGATTT 57.499 30.769 0.00 0.00 0.00 2.17
2439 4128 7.915508 TGTGTTTACTCCGCATATAAGATTTG 58.084 34.615 0.00 0.00 0.00 2.32
2440 4129 7.551262 TGTGTTTACTCCGCATATAAGATTTGT 59.449 33.333 0.00 0.00 0.00 2.83
2441 4130 8.395633 GTGTTTACTCCGCATATAAGATTTGTT 58.604 33.333 0.00 0.00 0.00 2.83
2442 4131 8.952278 TGTTTACTCCGCATATAAGATTTGTTT 58.048 29.630 0.00 0.00 0.00 2.83
2443 4132 9.221775 GTTTACTCCGCATATAAGATTTGTTTG 57.778 33.333 0.00 0.00 0.00 2.93
2444 4133 8.725405 TTACTCCGCATATAAGATTTGTTTGA 57.275 30.769 0.00 0.00 0.00 2.69
2445 4134 7.624360 ACTCCGCATATAAGATTTGTTTGAA 57.376 32.000 0.00 0.00 0.00 2.69
2446 4135 7.697691 ACTCCGCATATAAGATTTGTTTGAAG 58.302 34.615 0.00 0.00 0.00 3.02
2447 4136 7.336931 ACTCCGCATATAAGATTTGTTTGAAGT 59.663 33.333 0.00 0.00 0.00 3.01
2448 4137 7.693952 TCCGCATATAAGATTTGTTTGAAGTC 58.306 34.615 0.00 0.00 0.00 3.01
2449 4138 7.335673 TCCGCATATAAGATTTGTTTGAAGTCA 59.664 33.333 0.00 0.00 0.00 3.41
2450 4139 7.967854 CCGCATATAAGATTTGTTTGAAGTCAA 59.032 33.333 0.00 0.00 0.00 3.18
2451 4140 9.340695 CGCATATAAGATTTGTTTGAAGTCAAA 57.659 29.630 2.32 2.32 42.90 2.69
2474 4163 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
2475 4164 7.826260 ACTACACAAAGTTTGACCAAATTTG 57.174 32.000 22.23 11.40 36.30 2.32
2476 4165 7.382898 ACTACACAAAGTTTGACCAAATTTGT 58.617 30.769 22.23 14.37 39.54 2.83
2477 4166 8.524487 ACTACACAAAGTTTGACCAAATTTGTA 58.476 29.630 22.23 14.69 38.44 2.41
2478 4167 9.528018 CTACACAAAGTTTGACCAAATTTGTAT 57.472 29.630 22.23 8.81 38.44 2.29
2479 4168 8.785329 ACACAAAGTTTGACCAAATTTGTATT 57.215 26.923 22.23 5.55 38.44 1.89
2480 4169 9.877178 ACACAAAGTTTGACCAAATTTGTATTA 57.123 25.926 22.23 0.00 38.44 0.98
2563 4252 9.577110 ACATCTAATGCTATTGATTTTGTGTTG 57.423 29.630 0.00 0.00 0.00 3.33
2564 4253 9.577110 CATCTAATGCTATTGATTTTGTGTTGT 57.423 29.630 0.00 0.00 0.00 3.32
2565 4254 8.969121 TCTAATGCTATTGATTTTGTGTTGTG 57.031 30.769 0.00 0.00 0.00 3.33
2566 4255 8.791675 TCTAATGCTATTGATTTTGTGTTGTGA 58.208 29.630 0.00 0.00 0.00 3.58
2567 4256 9.409312 CTAATGCTATTGATTTTGTGTTGTGAA 57.591 29.630 0.00 0.00 0.00 3.18
2568 4257 8.836268 AATGCTATTGATTTTGTGTTGTGAAT 57.164 26.923 0.00 0.00 0.00 2.57
2569 4258 7.640616 TGCTATTGATTTTGTGTTGTGAATG 57.359 32.000 0.00 0.00 0.00 2.67
2570 4259 7.208777 TGCTATTGATTTTGTGTTGTGAATGT 58.791 30.769 0.00 0.00 0.00 2.71
2571 4260 7.710044 TGCTATTGATTTTGTGTTGTGAATGTT 59.290 29.630 0.00 0.00 0.00 2.71
2572 4261 8.005466 GCTATTGATTTTGTGTTGTGAATGTTG 58.995 33.333 0.00 0.00 0.00 3.33
2573 4262 9.247126 CTATTGATTTTGTGTTGTGAATGTTGA 57.753 29.630 0.00 0.00 0.00 3.18
2574 4263 6.884096 TGATTTTGTGTTGTGAATGTTGAC 57.116 33.333 0.00 0.00 0.00 3.18
2575 4264 6.393171 TGATTTTGTGTTGTGAATGTTGACA 58.607 32.000 0.00 0.00 0.00 3.58
2576 4265 7.040494 TGATTTTGTGTTGTGAATGTTGACAT 58.960 30.769 0.00 0.00 38.41 3.06
2578 4267 7.664082 TTTTGTGTTGTGAATGTTGACATTT 57.336 28.000 10.42 0.00 45.72 2.32
2579 4268 7.664082 TTTGTGTTGTGAATGTTGACATTTT 57.336 28.000 10.42 0.00 45.72 1.82
2580 4269 7.664082 TTGTGTTGTGAATGTTGACATTTTT 57.336 28.000 10.42 0.00 45.72 1.94
2638 4327 9.844790 TTGACTTCAGACAAATTTTATATGCAG 57.155 29.630 0.00 0.00 0.00 4.41
2639 4328 9.230122 TGACTTCAGACAAATTTTATATGCAGA 57.770 29.630 0.00 0.00 0.00 4.26
2640 4329 9.495754 GACTTCAGACAAATTTTATATGCAGAC 57.504 33.333 0.00 0.00 0.00 3.51
2641 4330 9.236006 ACTTCAGACAAATTTTATATGCAGACT 57.764 29.630 0.00 0.00 0.00 3.24
2656 4345 5.964958 TGCAGACTAAAAAGAAATGGAGG 57.035 39.130 0.00 0.00 0.00 4.30
2657 4346 4.766891 TGCAGACTAAAAAGAAATGGAGGG 59.233 41.667 0.00 0.00 0.00 4.30
2661 4350 7.394816 CAGACTAAAAAGAAATGGAGGGAGTA 58.605 38.462 0.00 0.00 0.00 2.59
2664 4353 9.327628 GACTAAAAAGAAATGGAGGGAGTATAC 57.672 37.037 0.00 0.00 0.00 1.47
2736 4425 7.847096 ACCTGGTTACTTGTTTTCTTCATTTT 58.153 30.769 0.00 0.00 0.00 1.82
2740 4429 9.495572 TGGTTACTTGTTTTCTTCATTTTGTTT 57.504 25.926 0.00 0.00 0.00 2.83
2776 4466 2.484264 GTGTGGTCACAGTTTCCATAGC 59.516 50.000 3.80 0.00 42.74 2.97
2786 4476 3.947834 CAGTTTCCATAGCTTGGGGTAAG 59.052 47.826 12.99 0.00 46.45 2.34
2823 4517 7.161404 ACACAAAATGCTGTCAGATACTTCTA 58.839 34.615 3.32 0.00 0.00 2.10
2832 4527 6.239008 GCTGTCAGATACTTCTAGCTCTGATT 60.239 42.308 3.32 0.00 44.18 2.57
2847 4542 7.870509 AGCTCTGATTTGCAATAGATTTACA 57.129 32.000 0.00 0.00 0.00 2.41
2849 4544 8.910944 AGCTCTGATTTGCAATAGATTTACAAT 58.089 29.630 0.00 0.00 0.00 2.71
2858 4553 5.446709 CAATAGATTTACAATCTGGCTGCG 58.553 41.667 8.92 0.00 0.00 5.18
2861 4556 2.418368 TTTACAATCTGGCTGCGGAT 57.582 45.000 0.00 0.00 0.00 4.18
2862 4557 3.552132 TTTACAATCTGGCTGCGGATA 57.448 42.857 0.00 0.00 0.00 2.59
2863 4558 2.820059 TACAATCTGGCTGCGGATAG 57.180 50.000 0.00 0.00 0.00 2.08
2865 4560 1.072159 AATCTGGCTGCGGATAGGC 59.928 57.895 0.00 0.00 43.03 3.93
2871 4566 1.587054 GCTGCGGATAGGCGATAGT 59.413 57.895 0.00 0.00 39.35 2.12
2872 4567 0.456995 GCTGCGGATAGGCGATAGTC 60.457 60.000 0.00 0.00 44.84 2.59
2896 4591 7.066284 GTCTTACTGATGTGTTTGCTATTCCAT 59.934 37.037 0.00 0.00 0.00 3.41
2908 4603 5.378230 TGCTATTCCATTGATTCCAGACT 57.622 39.130 0.00 0.00 0.00 3.24
2987 4722 2.579201 CCTTGCGGACCGTCTGAT 59.421 61.111 16.73 0.00 0.00 2.90
2988 4723 1.811266 CCTTGCGGACCGTCTGATG 60.811 63.158 16.73 0.50 0.00 3.07
2989 4724 1.811266 CTTGCGGACCGTCTGATGG 60.811 63.158 16.73 14.35 0.00 3.51
2990 4725 3.950794 TTGCGGACCGTCTGATGGC 62.951 63.158 16.73 8.54 0.00 4.40
2992 4727 4.129737 CGGACCGTCTGATGGCGT 62.130 66.667 15.80 0.00 0.00 5.68
2993 4728 2.509336 GGACCGTCTGATGGCGTG 60.509 66.667 15.80 0.00 0.00 5.34
2994 4729 2.571757 GACCGTCTGATGGCGTGA 59.428 61.111 15.80 0.00 0.00 4.35
2995 4730 1.141881 GACCGTCTGATGGCGTGAT 59.858 57.895 15.80 0.00 0.00 3.06
2996 4731 0.384309 GACCGTCTGATGGCGTGATA 59.616 55.000 15.80 0.00 0.00 2.15
2997 4732 0.102481 ACCGTCTGATGGCGTGATAC 59.898 55.000 15.80 0.00 0.00 2.24
2998 4733 0.385751 CCGTCTGATGGCGTGATACT 59.614 55.000 2.38 0.00 0.00 2.12
2999 4734 1.481240 CGTCTGATGGCGTGATACTG 58.519 55.000 0.00 0.00 0.00 2.74
3000 4735 1.858091 GTCTGATGGCGTGATACTGG 58.142 55.000 0.00 0.00 0.00 4.00
3001 4736 1.137086 GTCTGATGGCGTGATACTGGT 59.863 52.381 0.00 0.00 0.00 4.00
3002 4737 1.831106 TCTGATGGCGTGATACTGGTT 59.169 47.619 0.00 0.00 0.00 3.67
3003 4738 2.236146 TCTGATGGCGTGATACTGGTTT 59.764 45.455 0.00 0.00 0.00 3.27
3004 4739 2.609459 CTGATGGCGTGATACTGGTTTC 59.391 50.000 0.00 0.00 0.00 2.78
3005 4740 1.593006 GATGGCGTGATACTGGTTTCG 59.407 52.381 0.00 0.00 0.00 3.46
3006 4741 1.017177 TGGCGTGATACTGGTTTCGC 61.017 55.000 0.00 0.00 42.32 4.70
3007 4742 1.713830 GCGTGATACTGGTTTCGCC 59.286 57.895 0.00 0.00 38.16 5.54
3008 4743 1.995991 CGTGATACTGGTTTCGCCG 59.004 57.895 0.69 0.00 41.21 6.46
3009 4744 1.713830 GTGATACTGGTTTCGCCGC 59.286 57.895 0.00 0.00 41.21 6.53
3010 4745 1.448893 TGATACTGGTTTCGCCGCC 60.449 57.895 0.00 0.00 41.21 6.13
3011 4746 2.124860 ATACTGGTTTCGCCGCCC 60.125 61.111 0.00 0.00 41.21 6.13
3012 4747 2.588856 GATACTGGTTTCGCCGCCCT 62.589 60.000 0.00 0.00 41.21 5.19
3013 4748 2.193087 ATACTGGTTTCGCCGCCCTT 62.193 55.000 0.00 0.00 41.21 3.95
3014 4749 3.737172 CTGGTTTCGCCGCCCTTG 61.737 66.667 0.00 0.00 41.21 3.61
3017 4752 3.431725 GTTTCGCCGCCCTTGGAG 61.432 66.667 0.00 0.00 0.00 3.86
3018 4753 3.632080 TTTCGCCGCCCTTGGAGA 61.632 61.111 0.00 0.00 35.93 3.71
3019 4754 3.894547 TTTCGCCGCCCTTGGAGAC 62.895 63.158 0.00 0.00 37.57 3.36
3023 4758 4.452733 CCGCCCTTGGAGACCGTC 62.453 72.222 0.00 0.00 0.00 4.79
3024 4759 3.382832 CGCCCTTGGAGACCGTCT 61.383 66.667 0.00 0.00 0.00 4.18
3025 4760 2.266055 GCCCTTGGAGACCGTCTG 59.734 66.667 5.57 0.00 0.00 3.51
3026 4761 2.283529 GCCCTTGGAGACCGTCTGA 61.284 63.158 5.57 0.00 0.00 3.27
3070 4805 2.363975 AATGGGCATTGGCAGCAGG 61.364 57.895 12.70 0.00 43.71 4.85
3085 4820 1.476007 GCAGGGCTATCCGGATGACT 61.476 60.000 27.55 15.47 41.52 3.41
3103 4838 5.996669 TGACTTGCATCAGCTTATACATG 57.003 39.130 0.00 0.00 42.74 3.21
3118 4937 6.349115 GCTTATACATGATTCCTGGAGCATTG 60.349 42.308 0.00 9.13 0.00 2.82
3120 4939 2.307768 CATGATTCCTGGAGCATTGCT 58.692 47.619 11.79 11.79 43.88 3.91
3189 5015 7.032580 CCTGATACAAAGAACAAACAAACACA 58.967 34.615 0.00 0.00 0.00 3.72
3215 5041 5.892568 ACTCGACTTGTGTTATGTAGATCC 58.107 41.667 0.00 0.00 0.00 3.36
3246 5072 1.066430 GGCACCTGTTCGTCCATTAGA 60.066 52.381 0.00 0.00 0.00 2.10
3247 5073 2.000447 GCACCTGTTCGTCCATTAGAC 59.000 52.381 0.00 0.00 42.54 2.59
3248 5074 2.618053 CACCTGTTCGTCCATTAGACC 58.382 52.381 0.00 0.00 43.08 3.85
3250 5076 2.838202 ACCTGTTCGTCCATTAGACCAT 59.162 45.455 0.00 0.00 43.08 3.55
3251 5077 4.028131 ACCTGTTCGTCCATTAGACCATA 58.972 43.478 0.00 0.00 43.08 2.74
3252 5078 4.654262 ACCTGTTCGTCCATTAGACCATAT 59.346 41.667 0.00 0.00 43.08 1.78
3258 5088 4.038763 TCGTCCATTAGACCATATCACCAC 59.961 45.833 0.00 0.00 43.08 4.16
3274 5104 0.322008 CCACAGTGGAGGGAAGCTTC 60.322 60.000 18.54 18.54 40.96 3.86
3300 5135 2.044793 TCATCCTCTCCCAACACCTT 57.955 50.000 0.00 0.00 0.00 3.50
3301 5136 2.348472 TCATCCTCTCCCAACACCTTT 58.652 47.619 0.00 0.00 0.00 3.11
3309 5144 1.566703 TCCCAACACCTTTTGACTGGA 59.433 47.619 0.00 0.00 35.10 3.86
3313 5148 3.005791 CCAACACCTTTTGACTGGAATCC 59.994 47.826 0.00 0.00 35.10 3.01
3334 5169 0.378610 GTACAGTACGTACTCCGGGC 59.621 60.000 25.10 10.24 46.01 6.13
3335 5170 0.748005 TACAGTACGTACTCCGGGCC 60.748 60.000 25.10 0.00 42.24 5.80
3336 5171 2.048023 CAGTACGTACTCCGGGCCA 61.048 63.158 25.10 0.00 42.24 5.36
3337 5172 2.048603 AGTACGTACTCCGGGCCAC 61.049 63.158 22.45 0.00 42.24 5.01
3338 5173 3.133464 TACGTACTCCGGGCCACG 61.133 66.667 17.28 17.28 42.24 4.94
3365 5200 2.599578 GGGCGAGCGGGGAGTATA 60.600 66.667 0.00 0.00 0.00 1.47
3384 5219 0.660488 AAACATTCACTGCGCGTTCA 59.340 45.000 8.43 0.00 0.00 3.18
3395 5230 1.591594 CGCGTTCACAGTCCACAGT 60.592 57.895 0.00 0.00 0.00 3.55
3397 5232 0.529773 GCGTTCACAGTCCACAGTCA 60.530 55.000 0.00 0.00 0.00 3.41
3398 5233 1.491670 CGTTCACAGTCCACAGTCAG 58.508 55.000 0.00 0.00 0.00 3.51
3399 5234 1.067060 CGTTCACAGTCCACAGTCAGA 59.933 52.381 0.00 0.00 0.00 3.27
3400 5235 2.288457 CGTTCACAGTCCACAGTCAGAT 60.288 50.000 0.00 0.00 0.00 2.90
3401 5236 3.733337 GTTCACAGTCCACAGTCAGATT 58.267 45.455 0.00 0.00 0.00 2.40
3402 5237 4.130118 GTTCACAGTCCACAGTCAGATTT 58.870 43.478 0.00 0.00 0.00 2.17
3403 5238 4.422073 TCACAGTCCACAGTCAGATTTT 57.578 40.909 0.00 0.00 0.00 1.82
3404 5239 4.780815 TCACAGTCCACAGTCAGATTTTT 58.219 39.130 0.00 0.00 0.00 1.94
3476 5313 8.461222 TGCTTCGATGTGAAATGAAATAAATCT 58.539 29.630 0.00 0.00 35.79 2.40
3485 5322 8.883168 GTGAAATGAAATAAATCTATTCGTCGC 58.117 33.333 0.00 0.00 0.00 5.19
3655 5494 3.764885 CCAGTGGCAGCTTTTATGTAC 57.235 47.619 0.00 0.00 0.00 2.90
3660 5499 6.095440 CCAGTGGCAGCTTTTATGTACTTTAT 59.905 38.462 0.00 0.00 0.00 1.40
3662 5501 8.028938 CAGTGGCAGCTTTTATGTACTTTATTT 58.971 33.333 0.00 0.00 0.00 1.40
3663 5502 9.238368 AGTGGCAGCTTTTATGTACTTTATTTA 57.762 29.630 0.00 0.00 0.00 1.40
3664 5503 9.849166 GTGGCAGCTTTTATGTACTTTATTTAA 57.151 29.630 0.00 0.00 0.00 1.52
3666 5505 9.516314 GGCAGCTTTTATGTACTTTATTTAAGG 57.484 33.333 0.00 0.00 38.23 2.69
3682 5542 1.895020 AAGGTATGAACGAGGGCGCA 61.895 55.000 10.83 0.00 42.48 6.09
3711 5571 1.462283 CGTGAGTGACTGGATGCTTTG 59.538 52.381 0.00 0.00 0.00 2.77
3712 5572 2.771089 GTGAGTGACTGGATGCTTTGA 58.229 47.619 0.00 0.00 0.00 2.69
3713 5573 3.341823 GTGAGTGACTGGATGCTTTGAT 58.658 45.455 0.00 0.00 0.00 2.57
3714 5574 3.373439 GTGAGTGACTGGATGCTTTGATC 59.627 47.826 0.00 0.00 0.00 2.92
3780 5641 5.529800 AGTTGCCGAGTTTGTTTATACTGTT 59.470 36.000 0.00 0.00 0.00 3.16
3781 5642 6.707161 AGTTGCCGAGTTTGTTTATACTGTTA 59.293 34.615 0.00 0.00 0.00 2.41
3919 5795 3.655211 CCCCCTGCCAACTGCTCT 61.655 66.667 0.00 0.00 42.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.509336 ATTTCGCGAGAGGCACGG 60.509 61.111 9.59 0.00 43.84 4.94
1 2 1.805539 TGATTTCGCGAGAGGCACG 60.806 57.895 9.59 0.00 43.84 5.34
2 3 1.014044 TGTGATTTCGCGAGAGGCAC 61.014 55.000 21.07 21.07 43.84 5.01
3 4 0.320334 TTGTGATTTCGCGAGAGGCA 60.320 50.000 9.59 4.82 43.84 4.75
4 5 0.095417 GTTGTGATTTCGCGAGAGGC 59.905 55.000 9.59 1.86 43.69 4.70
5 6 0.721718 GGTTGTGATTTCGCGAGAGG 59.278 55.000 9.59 0.00 43.69 3.69
6 7 1.428448 TGGTTGTGATTTCGCGAGAG 58.572 50.000 9.59 0.00 43.69 3.20
7 8 1.731709 CATGGTTGTGATTTCGCGAGA 59.268 47.619 9.59 4.97 39.20 4.04
8 9 1.791555 GCATGGTTGTGATTTCGCGAG 60.792 52.381 9.59 0.00 0.00 5.03
9 10 0.167908 GCATGGTTGTGATTTCGCGA 59.832 50.000 3.71 3.71 0.00 5.87
10 11 0.798009 GGCATGGTTGTGATTTCGCG 60.798 55.000 0.00 0.00 0.00 5.87
11 12 0.527565 AGGCATGGTTGTGATTTCGC 59.472 50.000 0.00 0.00 0.00 4.70
12 13 2.086869 AGAGGCATGGTTGTGATTTCG 58.913 47.619 0.00 0.00 0.00 3.46
13 14 2.096496 CGAGAGGCATGGTTGTGATTTC 59.904 50.000 0.00 0.00 0.00 2.17
14 15 2.086869 CGAGAGGCATGGTTGTGATTT 58.913 47.619 0.00 0.00 0.00 2.17
15 16 1.742761 CGAGAGGCATGGTTGTGATT 58.257 50.000 0.00 0.00 0.00 2.57
16 17 0.745845 GCGAGAGGCATGGTTGTGAT 60.746 55.000 0.00 0.00 42.87 3.06
17 18 1.375908 GCGAGAGGCATGGTTGTGA 60.376 57.895 0.00 0.00 42.87 3.58
18 19 2.743752 CGCGAGAGGCATGGTTGTG 61.744 63.158 0.00 0.00 43.84 3.33
19 20 2.434884 CGCGAGAGGCATGGTTGT 60.435 61.111 0.00 0.00 43.84 3.32
20 21 3.197790 CCGCGAGAGGCATGGTTG 61.198 66.667 8.23 0.00 43.84 3.77
21 22 2.859273 CTTCCGCGAGAGGCATGGTT 62.859 60.000 8.23 0.00 43.84 3.67
22 23 3.376935 CTTCCGCGAGAGGCATGGT 62.377 63.158 8.23 0.00 43.84 3.55
23 24 2.587194 CTTCCGCGAGAGGCATGG 60.587 66.667 8.23 0.00 43.84 3.66
24 25 2.578163 TTCCTTCCGCGAGAGGCATG 62.578 60.000 19.15 0.00 43.84 4.06
25 26 1.899437 TTTCCTTCCGCGAGAGGCAT 61.899 55.000 19.15 0.00 43.84 4.40
26 27 2.107041 TTTTCCTTCCGCGAGAGGCA 62.107 55.000 19.15 8.97 43.84 4.75
27 28 0.953960 TTTTTCCTTCCGCGAGAGGC 60.954 55.000 19.15 0.00 38.69 4.70
28 29 3.226884 TTTTTCCTTCCGCGAGAGG 57.773 52.632 18.22 18.22 0.00 3.69
66 67 1.950484 GCCATGCCTCCTCGAAAAAGA 60.950 52.381 0.00 0.00 0.00 2.52
68 69 0.965363 GGCCATGCCTCCTCGAAAAA 60.965 55.000 0.00 0.00 46.69 1.94
89 91 1.221466 TTGTGCTTTCGTGAGAGGCG 61.221 55.000 0.00 0.00 43.69 5.52
96 98 1.008538 GCCTGGTTGTGCTTTCGTG 60.009 57.895 0.00 0.00 0.00 4.35
103 105 2.743928 CGAGAGGCCTGGTTGTGC 60.744 66.667 12.00 0.00 0.00 4.57
112 114 4.760047 TTGCTTCCGCGAGAGGCC 62.760 66.667 22.16 0.00 46.75 5.19
122 124 1.531578 GAGAGACACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
137 139 1.679680 ACGTGTTTCTTCCGTGAGAGA 59.320 47.619 0.00 0.00 32.86 3.10
160 174 0.664224 GCCCCTCGAAAACGAAAACA 59.336 50.000 0.00 0.00 0.00 2.83
161 175 0.664224 TGCCCCTCGAAAACGAAAAC 59.336 50.000 0.00 0.00 0.00 2.43
165 179 2.356553 CGTGCCCCTCGAAAACGA 60.357 61.111 0.00 0.00 36.38 3.85
167 181 3.733960 GCCGTGCCCCTCGAAAAC 61.734 66.667 0.00 0.00 0.00 2.43
194 210 2.712539 CACGGTTGTGCTTTCGCA 59.287 55.556 0.00 0.00 45.60 5.10
212 228 1.405526 CGATTTTGCTTCCGGGAGAGA 60.406 52.381 16.16 0.00 0.00 3.10
218 234 4.458164 GCACGATTTTGCTTCCGG 57.542 55.556 0.00 0.00 39.59 5.14
275 291 1.802365 ACGGCCGTACATCTCAAAAAC 59.198 47.619 33.34 0.00 0.00 2.43
276 292 1.801771 CACGGCCGTACATCTCAAAAA 59.198 47.619 33.70 0.00 0.00 1.94
277 293 1.434555 CACGGCCGTACATCTCAAAA 58.565 50.000 33.70 0.00 0.00 2.44
281 297 2.585247 GGCACGGCCGTACATCTC 60.585 66.667 33.70 15.04 39.62 2.75
335 355 0.031043 TCGTGCCTCTCGAAAACGAA 59.969 50.000 0.00 0.00 40.03 3.85
336 356 0.662374 GTCGTGCCTCTCGAAAACGA 60.662 55.000 0.00 4.29 40.63 3.85
338 358 1.615107 CGGTCGTGCCTCTCGAAAAC 61.615 60.000 0.00 0.00 39.01 2.43
341 361 2.981909 ACGGTCGTGCCTCTCGAA 60.982 61.111 0.00 0.00 39.01 3.71
342 362 3.733960 CACGGTCGTGCCTCTCGA 61.734 66.667 10.59 0.00 39.39 4.04
343 363 3.733960 TCACGGTCGTGCCTCTCG 61.734 66.667 17.46 0.00 45.04 4.04
344 364 2.126424 GTCACGGTCGTGCCTCTC 60.126 66.667 17.46 3.53 45.04 3.20
354 375 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
360 381 0.586802 GGTTTTGCTTTCGCGAGAGT 59.413 50.000 25.34 0.00 43.69 3.24
375 396 0.179067 TTTCACGAGAGGCACGGTTT 60.179 50.000 0.00 0.00 34.93 3.27
443 488 3.059188 GGTTTTGATTTCGCGAGAGTCAA 60.059 43.478 21.24 21.24 43.69 3.18
446 491 1.459592 CGGTTTTGATTTCGCGAGAGT 59.540 47.619 9.59 0.00 43.69 3.24
458 503 3.000815 GTGAGAGGCACGGTTTTGA 57.999 52.632 0.00 0.00 37.83 2.69
524 569 6.205784 CGGTCTTCATTAGCTTTTGAAACAA 58.794 36.000 10.96 0.00 31.85 2.83
526 571 4.617223 GCGGTCTTCATTAGCTTTTGAAAC 59.383 41.667 10.96 11.06 31.85 2.78
529 574 3.436704 CAGCGGTCTTCATTAGCTTTTGA 59.563 43.478 0.00 0.00 35.82 2.69
530 575 3.436704 TCAGCGGTCTTCATTAGCTTTTG 59.563 43.478 0.00 0.00 35.82 2.44
539 586 1.535462 CGGTTTTTCAGCGGTCTTCAT 59.465 47.619 0.00 0.00 42.96 2.57
540 587 0.941542 CGGTTTTTCAGCGGTCTTCA 59.058 50.000 0.00 0.00 42.96 3.02
585 632 1.663730 CGTTCCCGGCTTTTTAAACGG 60.664 52.381 0.00 7.76 45.57 4.44
586 633 1.677208 CGTTCCCGGCTTTTTAAACG 58.323 50.000 0.00 0.00 0.00 3.60
587 634 1.411394 GCGTTCCCGGCTTTTTAAAC 58.589 50.000 0.00 0.00 33.68 2.01
600 648 2.973419 TATTTTTCCACACGCGTTCC 57.027 45.000 10.22 0.00 0.00 3.62
601 649 5.623174 TTTTTATTTTTCCACACGCGTTC 57.377 34.783 10.22 0.00 0.00 3.95
624 672 0.606604 GCGCTCCCTCCGGATTTATA 59.393 55.000 3.57 0.00 37.60 0.98
625 673 1.371558 GCGCTCCCTCCGGATTTAT 59.628 57.895 3.57 0.00 37.60 1.40
626 674 2.803817 GGCGCTCCCTCCGGATTTA 61.804 63.158 3.57 0.00 37.60 1.40
661 709 3.914733 GCGCTCTAAGCCGTTCGC 61.915 66.667 0.00 0.00 38.18 4.70
671 719 2.126071 GTCACTTGGCGCGCTCTA 60.126 61.111 32.29 16.45 0.00 2.43
687 735 0.251354 AGCCTCACAATGATCAGCGT 59.749 50.000 0.09 0.00 0.00 5.07
696 744 0.909610 TCCTTCGGGAGCCTCACAAT 60.910 55.000 0.00 0.00 39.58 2.71
707 755 3.839432 GACGAGGGCTCCTTCGGG 61.839 72.222 21.59 0.00 31.76 5.14
718 766 1.404315 GGGAGCAACTAGTTGACGAGG 60.404 57.143 34.43 11.43 42.93 4.63
724 772 0.323629 TTCGGGGGAGCAACTAGTTG 59.676 55.000 27.85 27.85 43.14 3.16
727 775 0.108138 CTGTTCGGGGGAGCAACTAG 60.108 60.000 0.00 0.00 0.00 2.57
739 787 3.787001 GGGGGAGCTCCTGTTCGG 61.787 72.222 31.36 0.00 35.95 4.30
759 807 3.774599 AAATCGATGCTCCCCGCCC 62.775 63.158 0.00 0.00 38.05 6.13
760 808 1.384222 AAAAATCGATGCTCCCCGCC 61.384 55.000 0.00 0.00 38.05 6.13
761 809 0.029433 GAAAAATCGATGCTCCCCGC 59.971 55.000 0.00 0.00 39.77 6.13
762 810 1.331756 CTGAAAAATCGATGCTCCCCG 59.668 52.381 0.00 0.00 0.00 5.73
763 811 2.369394 ACTGAAAAATCGATGCTCCCC 58.631 47.619 0.00 0.00 0.00 4.81
764 812 4.168760 CAAACTGAAAAATCGATGCTCCC 58.831 43.478 0.00 0.00 0.00 4.30
765 813 3.609807 GCAAACTGAAAAATCGATGCTCC 59.390 43.478 0.00 0.00 0.00 4.70
766 814 4.089065 GTGCAAACTGAAAAATCGATGCTC 59.911 41.667 0.00 0.00 33.87 4.26
767 815 3.983344 GTGCAAACTGAAAAATCGATGCT 59.017 39.130 0.00 0.00 33.87 3.79
768 816 3.735240 TGTGCAAACTGAAAAATCGATGC 59.265 39.130 0.00 0.00 0.00 3.91
769 817 5.107760 CCTTGTGCAAACTGAAAAATCGATG 60.108 40.000 0.00 0.00 0.00 3.84
770 818 4.984161 CCTTGTGCAAACTGAAAAATCGAT 59.016 37.500 0.00 0.00 0.00 3.59
771 819 4.097135 TCCTTGTGCAAACTGAAAAATCGA 59.903 37.500 0.00 0.00 0.00 3.59
772 820 4.358851 TCCTTGTGCAAACTGAAAAATCG 58.641 39.130 0.00 0.00 0.00 3.34
773 821 5.812127 ACTTCCTTGTGCAAACTGAAAAATC 59.188 36.000 0.00 0.00 0.00 2.17
774 822 5.733676 ACTTCCTTGTGCAAACTGAAAAAT 58.266 33.333 0.00 0.00 0.00 1.82
775 823 5.146010 ACTTCCTTGTGCAAACTGAAAAA 57.854 34.783 0.00 0.00 0.00 1.94
776 824 4.799564 ACTTCCTTGTGCAAACTGAAAA 57.200 36.364 0.00 0.00 0.00 2.29
777 825 5.906113 TTACTTCCTTGTGCAAACTGAAA 57.094 34.783 0.00 0.00 0.00 2.69
778 826 7.309133 CCATATTACTTCCTTGTGCAAACTGAA 60.309 37.037 0.00 0.00 0.00 3.02
779 827 6.150976 CCATATTACTTCCTTGTGCAAACTGA 59.849 38.462 0.00 0.00 0.00 3.41
780 828 6.324819 CCATATTACTTCCTTGTGCAAACTG 58.675 40.000 0.00 0.00 0.00 3.16
781 829 5.418840 CCCATATTACTTCCTTGTGCAAACT 59.581 40.000 0.00 0.00 0.00 2.66
782 830 5.650543 CCCATATTACTTCCTTGTGCAAAC 58.349 41.667 0.00 0.00 0.00 2.93
783 831 4.159506 GCCCATATTACTTCCTTGTGCAAA 59.840 41.667 0.00 0.00 0.00 3.68
784 832 3.699038 GCCCATATTACTTCCTTGTGCAA 59.301 43.478 0.00 0.00 0.00 4.08
785 833 3.053693 AGCCCATATTACTTCCTTGTGCA 60.054 43.478 0.00 0.00 0.00 4.57
786 834 3.555966 AGCCCATATTACTTCCTTGTGC 58.444 45.455 0.00 0.00 0.00 4.57
787 835 6.119536 TGTTAGCCCATATTACTTCCTTGTG 58.880 40.000 0.00 0.00 0.00 3.33
788 836 6.321821 TGTTAGCCCATATTACTTCCTTGT 57.678 37.500 0.00 0.00 0.00 3.16
789 837 9.520515 AATATGTTAGCCCATATTACTTCCTTG 57.479 33.333 10.51 0.00 43.06 3.61
807 855 7.008332 TGGGCTACTACTCAGCTAATATGTTA 58.992 38.462 0.00 0.00 39.09 2.41
820 868 6.912951 TTGGTAATCTATGGGCTACTACTC 57.087 41.667 0.00 0.00 0.00 2.59
823 871 8.319057 CCATATTGGTAATCTATGGGCTACTA 57.681 38.462 0.00 0.00 38.71 1.82
835 886 3.806949 TCTGGGCCCATATTGGTAATC 57.193 47.619 28.82 0.00 35.17 1.75
940 993 0.103208 ACCCTAGCTTCTGAATCGCG 59.897 55.000 0.00 0.00 0.00 5.87
941 994 2.317530 AACCCTAGCTTCTGAATCGC 57.682 50.000 0.00 0.00 0.00 4.58
1005 1058 2.721167 CGCCACATCCTCCTCCGAA 61.721 63.158 0.00 0.00 0.00 4.30
1125 1178 2.745281 CAAATTACGAAAAGGGGCGAGA 59.255 45.455 0.00 0.00 0.00 4.04
1135 1188 4.688879 AGATCGACAGCACAAATTACGAAA 59.311 37.500 0.00 0.00 32.48 3.46
1146 1199 1.078848 AAGCCCAGATCGACAGCAC 60.079 57.895 0.00 0.00 0.00 4.40
1187 1257 3.262420 CCTAAGCACATACTGGACACAC 58.738 50.000 0.00 0.00 0.00 3.82
1203 1273 7.693969 ATTAAATAGCATAAGCCAGCCTAAG 57.306 36.000 0.00 0.00 43.56 2.18
1206 1276 7.175641 CAGTTATTAAATAGCATAAGCCAGCCT 59.824 37.037 0.00 0.00 43.56 4.58
1260 1333 3.011119 GTTTACACACCACAACTCCACA 58.989 45.455 0.00 0.00 0.00 4.17
1340 2451 2.154462 GACAAATCATATGAGGCCCCG 58.846 52.381 11.78 0.00 0.00 5.73
1341 2452 2.108952 AGGACAAATCATATGAGGCCCC 59.891 50.000 11.78 8.37 0.00 5.80
1382 2493 7.545362 ACAGTAAGCAGTTATTCATGATGTC 57.455 36.000 0.00 0.00 0.00 3.06
1384 2495 8.877808 TCTACAGTAAGCAGTTATTCATGATG 57.122 34.615 0.00 0.00 0.00 3.07
1416 2564 8.351495 TCAAAACTTTCAAATCAGCATGTTAC 57.649 30.769 0.00 0.00 37.40 2.50
1494 2953 5.532557 TGCCGAGATGACTACATATTTCTG 58.467 41.667 0.00 0.00 36.82 3.02
1523 2998 5.763204 CCTTAAGCAACCTGAAGTCTTACAA 59.237 40.000 0.00 0.00 28.74 2.41
1535 3010 5.791303 AGTTATAACCCCTTAAGCAACCT 57.209 39.130 12.05 0.00 0.00 3.50
1547 3027 4.037089 CCAACGGGCAATAAGTTATAACCC 59.963 45.833 17.68 17.68 32.65 4.11
1621 3101 4.487948 CAGCATCATACAACCCACAAAAG 58.512 43.478 0.00 0.00 0.00 2.27
1624 3104 1.818060 GCAGCATCATACAACCCACAA 59.182 47.619 0.00 0.00 0.00 3.33
1683 3163 7.201839 GGTCAAATTTCCCAACTGTAGTACAAA 60.202 37.037 4.21 0.00 0.00 2.83
1722 3203 2.375174 AGAACCTCAAATAGTGGCCACA 59.625 45.455 36.39 22.64 34.14 4.17
1723 3204 3.010420 GAGAACCTCAAATAGTGGCCAC 58.990 50.000 29.22 29.22 34.14 5.01
1773 3254 2.061773 GTTGATCATACGCCTGGATCG 58.938 52.381 0.00 0.00 40.17 3.69
1849 3330 6.083098 ACAATCTCCTCATAAGTCTCATCG 57.917 41.667 0.00 0.00 0.00 3.84
1861 3342 4.556233 CACTTACACGAACAATCTCCTCA 58.444 43.478 0.00 0.00 0.00 3.86
1883 3364 7.538303 TCAAAATTTTGAGGAACAAGAAAGC 57.462 32.000 26.01 0.00 41.88 3.51
1890 3371 9.638239 GCATATAGTTCAAAATTTTGAGGAACA 57.362 29.630 27.52 17.15 46.68 3.18
1921 3403 5.207768 CAGTCCGAATTTGAACAAACTGAG 58.792 41.667 2.03 0.00 32.51 3.35
2007 3491 5.221224 CCAGAGAGGCTCTACACATCTTTAG 60.221 48.000 18.75 0.00 38.99 1.85
2028 3516 2.229062 TCGTGCTAAACTCTCACTCCAG 59.771 50.000 0.00 0.00 0.00 3.86
2029 3517 2.235891 TCGTGCTAAACTCTCACTCCA 58.764 47.619 0.00 0.00 0.00 3.86
2038 3526 6.701841 CAGTATCATGGTAATCGTGCTAAACT 59.298 38.462 0.00 0.00 32.54 2.66
2043 3531 3.070159 AGCAGTATCATGGTAATCGTGCT 59.930 43.478 7.32 7.32 33.97 4.40
2082 3570 8.059461 TGAGTAAGGAACTGAGGATAGTATGAA 58.941 37.037 0.00 0.00 40.86 2.57
2086 3574 6.728411 TGTGAGTAAGGAACTGAGGATAGTA 58.272 40.000 0.00 0.00 40.86 1.82
2089 3577 5.958380 ACATGTGAGTAAGGAACTGAGGATA 59.042 40.000 0.00 0.00 40.86 2.59
2103 3591 5.496556 CACCTCCCAAATTACATGTGAGTA 58.503 41.667 9.11 0.00 0.00 2.59
2163 3653 6.699895 TTTACACGTTACTATGCAACTGAG 57.300 37.500 0.00 0.00 0.00 3.35
2212 3702 4.095483 CCAGCAGAATACAAGCAGTTAAGG 59.905 45.833 0.00 0.00 0.00 2.69
2283 3775 6.281405 CCTGGCTACCTACAATAACTGTAAG 58.719 44.000 0.00 0.00 40.06 2.34
2299 3791 5.977489 ATAAGTTCAAAAACCCTGGCTAC 57.023 39.130 0.00 0.00 35.92 3.58
2300 3792 6.987403 AAATAAGTTCAAAAACCCTGGCTA 57.013 33.333 0.00 0.00 35.92 3.93
2365 3857 5.918608 ACCAATAGACCATAGTGACATGAC 58.081 41.667 0.00 0.00 0.00 3.06
2382 3874 7.107542 GGGAGTACATTGTAAAGTGACCAATA 58.892 38.462 0.00 0.00 0.00 1.90
2386 3878 4.259356 GGGGAGTACATTGTAAAGTGACC 58.741 47.826 0.00 0.00 0.00 4.02
2387 3879 4.259356 GGGGGAGTACATTGTAAAGTGAC 58.741 47.826 0.00 0.00 0.00 3.67
2407 3899 0.869730 CGGAGTAAACACAAACGGGG 59.130 55.000 0.00 0.00 0.00 5.73
2412 4101 8.500753 AATCTTATATGCGGAGTAAACACAAA 57.499 30.769 0.00 0.00 0.00 2.83
2418 4107 9.168451 TCAAACAAATCTTATATGCGGAGTAAA 57.832 29.630 0.00 0.00 0.00 2.01
2424 4113 7.471721 TGACTTCAAACAAATCTTATATGCGG 58.528 34.615 0.00 0.00 0.00 5.69
2425 4114 8.894409 TTGACTTCAAACAAATCTTATATGCG 57.106 30.769 0.00 0.00 32.11 4.73
2449 4138 8.716909 CAAATTTGGTCAAACTTTGTGTAGTTT 58.283 29.630 10.49 0.00 46.42 2.66
2450 4139 7.875554 ACAAATTTGGTCAAACTTTGTGTAGTT 59.124 29.630 21.74 0.00 38.70 2.24
2451 4140 7.382898 ACAAATTTGGTCAAACTTTGTGTAGT 58.617 30.769 21.74 4.45 38.70 2.73
2452 4141 7.826260 ACAAATTTGGTCAAACTTTGTGTAG 57.174 32.000 21.74 4.02 38.70 2.74
2453 4142 9.877178 AATACAAATTTGGTCAAACTTTGTGTA 57.123 25.926 25.42 16.26 39.43 2.90
2454 4143 8.785329 AATACAAATTTGGTCAAACTTTGTGT 57.215 26.923 25.42 21.32 39.43 3.72
2537 4226 9.577110 CAACACAAAATCAATAGCATTAGATGT 57.423 29.630 0.00 0.00 0.00 3.06
2538 4227 9.577110 ACAACACAAAATCAATAGCATTAGATG 57.423 29.630 0.00 0.00 0.00 2.90
2539 4228 9.577110 CACAACACAAAATCAATAGCATTAGAT 57.423 29.630 0.00 0.00 0.00 1.98
2540 4229 8.791675 TCACAACACAAAATCAATAGCATTAGA 58.208 29.630 0.00 0.00 0.00 2.10
2541 4230 8.969121 TCACAACACAAAATCAATAGCATTAG 57.031 30.769 0.00 0.00 0.00 1.73
2542 4231 9.926158 ATTCACAACACAAAATCAATAGCATTA 57.074 25.926 0.00 0.00 0.00 1.90
2543 4232 8.714179 CATTCACAACACAAAATCAATAGCATT 58.286 29.630 0.00 0.00 0.00 3.56
2544 4233 7.874016 ACATTCACAACACAAAATCAATAGCAT 59.126 29.630 0.00 0.00 0.00 3.79
2545 4234 7.208777 ACATTCACAACACAAAATCAATAGCA 58.791 30.769 0.00 0.00 0.00 3.49
2546 4235 7.642071 ACATTCACAACACAAAATCAATAGC 57.358 32.000 0.00 0.00 0.00 2.97
2547 4236 9.247126 TCAACATTCACAACACAAAATCAATAG 57.753 29.630 0.00 0.00 0.00 1.73
2548 4237 9.029243 GTCAACATTCACAACACAAAATCAATA 57.971 29.630 0.00 0.00 0.00 1.90
2549 4238 7.548427 TGTCAACATTCACAACACAAAATCAAT 59.452 29.630 0.00 0.00 0.00 2.57
2550 4239 6.870439 TGTCAACATTCACAACACAAAATCAA 59.130 30.769 0.00 0.00 0.00 2.57
2551 4240 6.393171 TGTCAACATTCACAACACAAAATCA 58.607 32.000 0.00 0.00 0.00 2.57
2552 4241 6.884096 TGTCAACATTCACAACACAAAATC 57.116 33.333 0.00 0.00 0.00 2.17
2553 4242 7.846644 AATGTCAACATTCACAACACAAAAT 57.153 28.000 2.53 0.00 42.45 1.82
2554 4243 7.664082 AAATGTCAACATTCACAACACAAAA 57.336 28.000 8.72 0.00 45.06 2.44
2555 4244 7.664082 AAAATGTCAACATTCACAACACAAA 57.336 28.000 8.72 0.00 45.06 2.83
2556 4245 7.664082 AAAAATGTCAACATTCACAACACAA 57.336 28.000 8.72 0.00 45.06 3.33
2612 4301 9.844790 CTGCATATAAAATTTGTCTGAAGTCAA 57.155 29.630 0.00 0.00 0.00 3.18
2613 4302 9.230122 TCTGCATATAAAATTTGTCTGAAGTCA 57.770 29.630 0.00 0.00 0.00 3.41
2614 4303 9.495754 GTCTGCATATAAAATTTGTCTGAAGTC 57.504 33.333 0.00 0.00 0.00 3.01
2615 4304 9.236006 AGTCTGCATATAAAATTTGTCTGAAGT 57.764 29.630 0.00 0.00 0.00 3.01
2630 4319 9.342308 CCTCCATTTCTTTTTAGTCTGCATATA 57.658 33.333 0.00 0.00 0.00 0.86
2631 4320 7.286316 CCCTCCATTTCTTTTTAGTCTGCATAT 59.714 37.037 0.00 0.00 0.00 1.78
2632 4321 6.603201 CCCTCCATTTCTTTTTAGTCTGCATA 59.397 38.462 0.00 0.00 0.00 3.14
2633 4322 5.420104 CCCTCCATTTCTTTTTAGTCTGCAT 59.580 40.000 0.00 0.00 0.00 3.96
2634 4323 4.766891 CCCTCCATTTCTTTTTAGTCTGCA 59.233 41.667 0.00 0.00 0.00 4.41
2635 4324 5.010282 TCCCTCCATTTCTTTTTAGTCTGC 58.990 41.667 0.00 0.00 0.00 4.26
2636 4325 6.241645 ACTCCCTCCATTTCTTTTTAGTCTG 58.758 40.000 0.00 0.00 0.00 3.51
2637 4326 6.455690 ACTCCCTCCATTTCTTTTTAGTCT 57.544 37.500 0.00 0.00 0.00 3.24
2638 4327 9.327628 GTATACTCCCTCCATTTCTTTTTAGTC 57.672 37.037 0.00 0.00 0.00 2.59
2639 4328 8.832735 TGTATACTCCCTCCATTTCTTTTTAGT 58.167 33.333 4.17 0.00 0.00 2.24
2640 4329 9.110502 GTGTATACTCCCTCCATTTCTTTTTAG 57.889 37.037 4.17 0.00 0.00 1.85
2641 4330 7.767198 CGTGTATACTCCCTCCATTTCTTTTTA 59.233 37.037 4.17 0.00 0.00 1.52
2642 4331 6.598064 CGTGTATACTCCCTCCATTTCTTTTT 59.402 38.462 4.17 0.00 0.00 1.94
2643 4332 6.070424 TCGTGTATACTCCCTCCATTTCTTTT 60.070 38.462 4.17 0.00 0.00 2.27
2644 4333 5.424252 TCGTGTATACTCCCTCCATTTCTTT 59.576 40.000 4.17 0.00 0.00 2.52
2645 4334 4.960469 TCGTGTATACTCCCTCCATTTCTT 59.040 41.667 4.17 0.00 0.00 2.52
2646 4335 4.543689 TCGTGTATACTCCCTCCATTTCT 58.456 43.478 4.17 0.00 0.00 2.52
2647 4336 4.931661 TCGTGTATACTCCCTCCATTTC 57.068 45.455 4.17 0.00 0.00 2.17
2648 4337 6.989155 TTATCGTGTATACTCCCTCCATTT 57.011 37.500 4.17 0.00 0.00 2.32
2649 4338 7.234782 TGAATTATCGTGTATACTCCCTCCATT 59.765 37.037 4.17 0.00 0.00 3.16
2650 4339 6.724441 TGAATTATCGTGTATACTCCCTCCAT 59.276 38.462 4.17 0.00 0.00 3.41
2651 4340 6.072649 TGAATTATCGTGTATACTCCCTCCA 58.927 40.000 4.17 0.00 0.00 3.86
2652 4341 6.585695 TGAATTATCGTGTATACTCCCTCC 57.414 41.667 4.17 0.00 0.00 4.30
2653 4342 8.057536 AGATGAATTATCGTGTATACTCCCTC 57.942 38.462 4.17 0.00 40.86 4.30
2654 4343 8.423906 AAGATGAATTATCGTGTATACTCCCT 57.576 34.615 4.17 0.00 40.86 4.20
2701 4390 4.951094 ACAAGTAACCAGGTTTAACAGCAA 59.049 37.500 11.02 0.00 0.00 3.91
2703 4392 5.509716 AACAAGTAACCAGGTTTAACAGC 57.490 39.130 11.02 0.00 0.00 4.40
2736 4425 8.911918 ACCACACAGATTTGTATAAGTAAACA 57.088 30.769 0.00 0.00 35.25 2.83
2776 4466 4.196626 TGTTGTATCGACTTACCCCAAG 57.803 45.455 0.00 0.00 40.38 3.61
2786 4476 5.115472 CAGCATTTTGTGTTGTTGTATCGAC 59.885 40.000 0.00 0.00 34.67 4.20
2823 4517 7.870509 TGTAAATCTATTGCAAATCAGAGCT 57.129 32.000 1.71 0.00 0.00 4.09
2832 4527 6.681120 GCAGCCAGATTGTAAATCTATTGCAA 60.681 38.462 0.00 0.00 32.78 4.08
2847 4542 1.072159 GCCTATCCGCAGCCAGATT 59.928 57.895 0.00 0.00 0.00 2.40
2849 4544 3.916544 CGCCTATCCGCAGCCAGA 61.917 66.667 0.00 0.00 0.00 3.86
2858 4553 5.416326 ACATCAGTAAGACTATCGCCTATCC 59.584 44.000 0.00 0.00 0.00 2.59
2861 4556 5.131067 ACACATCAGTAAGACTATCGCCTA 58.869 41.667 0.00 0.00 0.00 3.93
2862 4557 3.954904 ACACATCAGTAAGACTATCGCCT 59.045 43.478 0.00 0.00 0.00 5.52
2863 4558 4.308899 ACACATCAGTAAGACTATCGCC 57.691 45.455 0.00 0.00 0.00 5.54
2865 4560 5.807520 AGCAAACACATCAGTAAGACTATCG 59.192 40.000 0.00 0.00 0.00 2.92
2871 4566 6.472016 TGGAATAGCAAACACATCAGTAAGA 58.528 36.000 0.00 0.00 0.00 2.10
2872 4567 6.741992 TGGAATAGCAAACACATCAGTAAG 57.258 37.500 0.00 0.00 0.00 2.34
2878 4573 6.698766 GGAATCAATGGAATAGCAAACACATC 59.301 38.462 0.00 0.00 0.00 3.06
2883 4578 6.096001 AGTCTGGAATCAATGGAATAGCAAAC 59.904 38.462 0.00 0.00 0.00 2.93
2896 4591 2.621338 CGCTTGCTAGTCTGGAATCAA 58.379 47.619 0.00 0.00 0.00 2.57
2908 4603 2.124736 GGGATGGTGCGCTTGCTA 60.125 61.111 9.73 0.00 40.12 3.49
2987 4722 1.017177 GCGAAACCAGTATCACGCCA 61.017 55.000 0.00 0.00 40.14 5.69
2988 4723 1.713830 GCGAAACCAGTATCACGCC 59.286 57.895 0.00 0.00 40.14 5.68
2989 4724 1.713830 GGCGAAACCAGTATCACGC 59.286 57.895 0.00 0.00 44.18 5.34
2990 4725 1.995991 CGGCGAAACCAGTATCACG 59.004 57.895 0.00 0.00 39.03 4.35
2991 4726 1.702491 GGCGGCGAAACCAGTATCAC 61.702 60.000 12.98 0.00 39.03 3.06
2992 4727 1.448893 GGCGGCGAAACCAGTATCA 60.449 57.895 12.98 0.00 39.03 2.15
2993 4728 2.178235 GGGCGGCGAAACCAGTATC 61.178 63.158 12.98 0.00 39.03 2.24
2994 4729 2.124860 GGGCGGCGAAACCAGTAT 60.125 61.111 12.98 0.00 39.03 2.12
2995 4730 2.886134 AAGGGCGGCGAAACCAGTA 61.886 57.895 12.98 0.00 39.03 2.74
2996 4731 4.265056 AAGGGCGGCGAAACCAGT 62.265 61.111 12.98 0.00 39.03 4.00
2997 4732 3.737172 CAAGGGCGGCGAAACCAG 61.737 66.667 12.98 2.47 39.03 4.00
3000 4735 3.431725 CTCCAAGGGCGGCGAAAC 61.432 66.667 12.98 0.00 0.00 2.78
3001 4736 3.632080 TCTCCAAGGGCGGCGAAA 61.632 61.111 12.98 0.00 0.00 3.46
3002 4737 4.388499 GTCTCCAAGGGCGGCGAA 62.388 66.667 12.98 0.00 0.00 4.70
3006 4741 4.452733 GACGGTCTCCAAGGGCGG 62.453 72.222 0.00 0.00 0.00 6.13
3007 4742 3.382832 AGACGGTCTCCAAGGGCG 61.383 66.667 4.45 0.00 0.00 6.13
3008 4743 1.827399 TTCAGACGGTCTCCAAGGGC 61.827 60.000 7.89 0.00 0.00 5.19
3009 4744 0.247736 CTTCAGACGGTCTCCAAGGG 59.752 60.000 7.89 0.00 0.00 3.95
3010 4745 0.969894 ACTTCAGACGGTCTCCAAGG 59.030 55.000 21.84 8.20 0.00 3.61
3011 4746 1.613925 TGACTTCAGACGGTCTCCAAG 59.386 52.381 18.53 18.53 34.01 3.61
3012 4747 1.613925 CTGACTTCAGACGGTCTCCAA 59.386 52.381 7.89 3.42 46.59 3.53
3013 4748 1.248486 CTGACTTCAGACGGTCTCCA 58.752 55.000 7.89 0.00 46.59 3.86
3014 4749 0.528470 CCTGACTTCAGACGGTCTCC 59.472 60.000 7.89 0.00 46.59 3.71
3015 4750 0.528470 CCCTGACTTCAGACGGTCTC 59.472 60.000 7.89 0.00 46.59 3.36
3016 4751 1.536943 GCCCTGACTTCAGACGGTCT 61.537 60.000 4.45 4.45 46.59 3.85
3017 4752 1.079750 GCCCTGACTTCAGACGGTC 60.080 63.158 7.87 0.00 46.59 4.79
3018 4753 2.932234 CGCCCTGACTTCAGACGGT 61.932 63.158 7.87 0.00 46.59 4.83
3019 4754 2.125912 CGCCCTGACTTCAGACGG 60.126 66.667 7.87 2.79 46.59 4.79
3020 4755 2.125912 CCGCCCTGACTTCAGACG 60.126 66.667 7.87 10.46 46.59 4.18
3021 4756 0.670854 GTTCCGCCCTGACTTCAGAC 60.671 60.000 7.87 0.00 46.59 3.51
3022 4757 1.118965 TGTTCCGCCCTGACTTCAGA 61.119 55.000 7.87 0.00 46.59 3.27
3023 4758 0.250295 TTGTTCCGCCCTGACTTCAG 60.250 55.000 0.00 0.00 43.40 3.02
3024 4759 0.534203 GTTGTTCCGCCCTGACTTCA 60.534 55.000 0.00 0.00 0.00 3.02
3025 4760 0.250338 AGTTGTTCCGCCCTGACTTC 60.250 55.000 0.00 0.00 0.00 3.01
3026 4761 1.053424 TAGTTGTTCCGCCCTGACTT 58.947 50.000 0.00 0.00 0.00 3.01
3070 4805 0.106708 TGCAAGTCATCCGGATAGCC 59.893 55.000 18.63 7.85 0.00 3.93
3085 4820 6.206048 CAGGAATCATGTATAAGCTGATGCAA 59.794 38.462 5.88 0.00 42.74 4.08
3103 4838 1.030457 CCAGCAATGCTCCAGGAATC 58.970 55.000 4.03 0.00 36.40 2.52
3138 4957 5.186198 ACATGGGTGATTAACTCAAGCTAC 58.814 41.667 0.00 0.00 44.40 3.58
3189 5015 6.570672 TCTACATAACACAAGTCGAGTTCT 57.429 37.500 1.51 0.00 30.49 3.01
3215 5041 0.107508 ACAGGTGCCGGATTCAGATG 60.108 55.000 5.05 0.00 0.00 2.90
3246 5072 1.839994 CCTCCACTGTGGTGATATGGT 59.160 52.381 25.97 0.00 45.61 3.55
3247 5073 1.141657 CCCTCCACTGTGGTGATATGG 59.858 57.143 25.97 16.17 45.61 2.74
3248 5074 2.118679 TCCCTCCACTGTGGTGATATG 58.881 52.381 25.97 11.82 45.61 1.78
3250 5076 2.187958 CTTCCCTCCACTGTGGTGATA 58.812 52.381 25.97 13.02 45.61 2.15
3251 5077 0.987294 CTTCCCTCCACTGTGGTGAT 59.013 55.000 25.97 0.00 45.61 3.06
3252 5078 1.768684 GCTTCCCTCCACTGTGGTGA 61.769 60.000 25.97 17.93 45.61 4.02
3258 5088 0.689623 ACTGAAGCTTCCCTCCACTG 59.310 55.000 23.42 4.38 0.00 3.66
3274 5104 4.878397 GTGTTGGGAGAGGATGATTAACTG 59.122 45.833 0.00 0.00 0.00 3.16
3321 5156 3.133464 CGTGGCCCGGAGTACGTA 61.133 66.667 0.73 0.00 42.24 3.57
3348 5183 1.751349 TTTATACTCCCCGCTCGCCC 61.751 60.000 0.00 0.00 0.00 6.13
3349 5184 0.599466 GTTTATACTCCCCGCTCGCC 60.599 60.000 0.00 0.00 0.00 5.54
3350 5185 0.103572 TGTTTATACTCCCCGCTCGC 59.896 55.000 0.00 0.00 0.00 5.03
3351 5186 2.814280 ATGTTTATACTCCCCGCTCG 57.186 50.000 0.00 0.00 0.00 5.03
3352 5187 3.808174 GTGAATGTTTATACTCCCCGCTC 59.192 47.826 0.00 0.00 0.00 5.03
3353 5188 3.454812 AGTGAATGTTTATACTCCCCGCT 59.545 43.478 0.00 0.00 0.00 5.52
3354 5189 3.560068 CAGTGAATGTTTATACTCCCCGC 59.440 47.826 0.00 0.00 0.00 6.13
3365 5200 0.660488 TGAACGCGCAGTGAATGTTT 59.340 45.000 5.73 0.00 43.07 2.83
3405 5240 4.340617 ACTGTGGACTGTTTCCTCAAAAA 58.659 39.130 0.00 0.00 45.34 1.94
3406 5241 3.945285 GACTGTGGACTGTTTCCTCAAAA 59.055 43.478 0.00 0.00 45.34 2.44
3407 5242 3.054728 TGACTGTGGACTGTTTCCTCAAA 60.055 43.478 0.00 0.00 45.34 2.69
3408 5243 2.503765 TGACTGTGGACTGTTTCCTCAA 59.496 45.455 0.00 0.00 45.34 3.02
3409 5244 2.103094 CTGACTGTGGACTGTTTCCTCA 59.897 50.000 0.00 0.00 46.10 3.86
3410 5245 2.103263 ACTGACTGTGGACTGTTTCCTC 59.897 50.000 0.00 0.00 46.10 3.71
3411 5246 2.119495 ACTGACTGTGGACTGTTTCCT 58.881 47.619 0.00 0.00 46.10 3.36
3412 5247 2.622064 ACTGACTGTGGACTGTTTCC 57.378 50.000 0.00 0.00 46.13 3.13
3413 5248 3.309954 GTGAACTGACTGTGGACTGTTTC 59.690 47.826 0.00 0.00 32.19 2.78
3414 5249 3.270877 GTGAACTGACTGTGGACTGTTT 58.729 45.455 0.00 0.00 32.19 2.83
3415 5250 2.738643 CGTGAACTGACTGTGGACTGTT 60.739 50.000 0.00 0.00 33.85 3.16
3416 5251 1.202417 CGTGAACTGACTGTGGACTGT 60.202 52.381 0.00 0.00 0.00 3.55
3417 5252 1.491670 CGTGAACTGACTGTGGACTG 58.508 55.000 0.00 0.00 0.00 3.51
3418 5253 0.389391 CCGTGAACTGACTGTGGACT 59.611 55.000 0.00 0.00 0.00 3.85
3419 5254 1.222115 GCCGTGAACTGACTGTGGAC 61.222 60.000 0.00 0.00 0.00 4.02
3420 5255 1.069090 GCCGTGAACTGACTGTGGA 59.931 57.895 0.00 0.00 0.00 4.02
3421 5256 2.310233 CGCCGTGAACTGACTGTGG 61.310 63.158 0.00 0.00 0.00 4.17
3422 5257 1.278172 CTCGCCGTGAACTGACTGTG 61.278 60.000 0.00 0.00 0.00 3.66
3423 5258 1.007271 CTCGCCGTGAACTGACTGT 60.007 57.895 0.00 0.00 0.00 3.55
3424 5259 2.375766 GCTCGCCGTGAACTGACTG 61.376 63.158 0.00 0.00 0.00 3.51
3425 5260 2.049063 GCTCGCCGTGAACTGACT 60.049 61.111 0.00 0.00 0.00 3.41
3426 5261 2.049063 AGCTCGCCGTGAACTGAC 60.049 61.111 0.00 0.00 0.00 3.51
3427 5262 2.049156 CAGCTCGCCGTGAACTGA 60.049 61.111 6.51 0.00 42.28 3.41
3428 5263 1.016130 AATCAGCTCGCCGTGAACTG 61.016 55.000 6.08 6.08 41.28 3.16
3429 5264 0.320771 AAATCAGCTCGCCGTGAACT 60.321 50.000 0.00 0.00 0.00 3.01
3476 5313 3.173599 CAGGTTAGTTTCGCGACGAATA 58.826 45.455 9.15 0.81 45.28 1.75
3478 5315 1.269206 ACAGGTTAGTTTCGCGACGAA 60.269 47.619 9.15 9.97 44.28 3.85
3480 5317 0.433492 CACAGGTTAGTTTCGCGACG 59.567 55.000 9.15 0.00 0.00 5.12
3481 5318 0.788391 CCACAGGTTAGTTTCGCGAC 59.212 55.000 9.15 0.00 0.00 5.19
3482 5319 0.390124 ACCACAGGTTAGTTTCGCGA 59.610 50.000 3.71 3.71 27.29 5.87
3485 5322 1.871039 CACCACCACAGGTTAGTTTCG 59.129 52.381 0.00 0.00 40.77 3.46
3488 5325 0.476771 CCCACCACCACAGGTTAGTT 59.523 55.000 0.00 0.00 40.77 2.24
3490 5327 0.250727 CACCCACCACCACAGGTTAG 60.251 60.000 0.00 0.00 40.77 2.34
3491 5328 1.710996 CCACCCACCACCACAGGTTA 61.711 60.000 0.00 0.00 40.77 2.85
3533 5370 1.099689 CGTGTCAACTTTGTGGGGTT 58.900 50.000 0.00 0.00 0.00 4.11
3539 5376 3.184379 CGTGATCATCGTGTCAACTTTGT 59.816 43.478 0.00 0.00 0.00 2.83
3652 5491 9.038803 CCCTCGTTCATACCTTAAATAAAGTAC 57.961 37.037 0.00 0.00 32.89 2.73
3653 5492 7.712205 GCCCTCGTTCATACCTTAAATAAAGTA 59.288 37.037 0.00 0.00 32.89 2.24
3655 5494 6.292703 CGCCCTCGTTCATACCTTAAATAAAG 60.293 42.308 0.00 0.00 34.73 1.85
3660 5499 2.896168 CGCCCTCGTTCATACCTTAAA 58.104 47.619 0.00 0.00 0.00 1.52
3662 5501 0.103572 GCGCCCTCGTTCATACCTTA 59.896 55.000 0.00 0.00 38.14 2.69
3663 5502 1.153429 GCGCCCTCGTTCATACCTT 60.153 57.895 0.00 0.00 38.14 3.50
3664 5503 1.686325 ATGCGCCCTCGTTCATACCT 61.686 55.000 4.18 0.00 38.14 3.08
3665 5504 0.032952 TATGCGCCCTCGTTCATACC 59.967 55.000 4.18 0.00 38.14 2.73
3666 5505 1.269621 ACTATGCGCCCTCGTTCATAC 60.270 52.381 4.18 0.00 38.14 2.39
3682 5542 1.135660 CAGTCACTCACGACGCACTAT 60.136 52.381 0.00 0.00 40.98 2.12
3691 5551 1.462283 CAAAGCATCCAGTCACTCACG 59.538 52.381 0.00 0.00 0.00 4.35
3711 5571 0.041839 GCAACGTGCATGGATCGATC 60.042 55.000 17.36 17.36 44.26 3.69
3712 5572 1.765161 CGCAACGTGCATGGATCGAT 61.765 55.000 11.36 0.00 45.36 3.59
3713 5573 2.451990 CGCAACGTGCATGGATCGA 61.452 57.895 11.36 0.00 45.36 3.59
3714 5574 2.021793 CGCAACGTGCATGGATCG 59.978 61.111 11.36 6.24 45.36 3.69
3803 5664 0.878523 ACCGATCACACCAACACGTG 60.879 55.000 15.48 15.48 39.75 4.49
3804 5665 0.599204 GACCGATCACACCAACACGT 60.599 55.000 0.00 0.00 0.00 4.49
3805 5666 0.319555 AGACCGATCACACCAACACG 60.320 55.000 0.00 0.00 0.00 4.49
3806 5667 1.148310 CAGACCGATCACACCAACAC 58.852 55.000 0.00 0.00 0.00 3.32
3807 5668 0.034756 CCAGACCGATCACACCAACA 59.965 55.000 0.00 0.00 0.00 3.33
3808 5669 0.320374 TCCAGACCGATCACACCAAC 59.680 55.000 0.00 0.00 0.00 3.77
3865 5726 4.806481 CGCGTCGTCGTCGGATGT 62.806 66.667 13.43 0.00 39.49 3.06
3908 5784 0.392327 GGGAGAGAAGAGCAGTTGGC 60.392 60.000 0.00 0.00 45.30 4.52
3909 5785 0.251634 GGGGAGAGAAGAGCAGTTGG 59.748 60.000 0.00 0.00 0.00 3.77
3910 5786 1.274712 AGGGGAGAGAAGAGCAGTTG 58.725 55.000 0.00 0.00 0.00 3.16
3911 5787 2.930109 TAGGGGAGAGAAGAGCAGTT 57.070 50.000 0.00 0.00 0.00 3.16
3912 5788 4.757997 ATATAGGGGAGAGAAGAGCAGT 57.242 45.455 0.00 0.00 0.00 4.40
3914 5790 4.959210 GCATATATAGGGGAGAGAAGAGCA 59.041 45.833 0.00 0.00 0.00 4.26
3915 5791 4.959210 TGCATATATAGGGGAGAGAAGAGC 59.041 45.833 0.00 0.00 0.00 4.09
3917 5793 4.950475 CGTGCATATATAGGGGAGAGAAGA 59.050 45.833 0.00 0.00 0.00 2.87
3918 5794 4.440802 GCGTGCATATATAGGGGAGAGAAG 60.441 50.000 0.00 0.00 0.00 2.85
3919 5795 3.447586 GCGTGCATATATAGGGGAGAGAA 59.552 47.826 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.