Multiple sequence alignment - TraesCS1D01G272800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G272800 chr1D 100.000 4801 0 0 1 4801 366722326 366727126 0.000000e+00 8866
1 TraesCS1D01G272800 chr1D 86.029 136 19 0 2552 2687 267385359 267385224 3.870000e-31 147
2 TraesCS1D01G272800 chr1B 90.729 4131 218 84 247 4313 491042080 491038051 0.000000e+00 5354
3 TraesCS1D01G272800 chr1B 90.960 177 11 4 71 246 491042373 491042201 2.890000e-57 233
4 TraesCS1D01G272800 chr1B 85.294 136 20 0 2552 2687 346167528 346167663 1.800000e-29 141
5 TraesCS1D01G272800 chr1B 95.714 70 3 0 4732 4801 429819674 429819605 3.930000e-21 113
6 TraesCS1D01G272800 chr1A 90.499 1642 92 30 1941 3532 465454250 465452623 0.000000e+00 2109
7 TraesCS1D01G272800 chr1A 88.731 1686 89 47 247 1899 465455865 465454248 0.000000e+00 1967
8 TraesCS1D01G272800 chr1A 92.138 636 35 9 3537 4160 465452524 465451892 0.000000e+00 883
9 TraesCS1D01G272800 chr1A 88.312 231 20 3 22 246 465456192 465455963 2.200000e-68 270
10 TraesCS1D01G272800 chr1A 86.730 211 20 4 4244 4449 465451694 465451487 1.340000e-55 228
11 TraesCS1D01G272800 chr1A 86.029 136 19 0 2552 2687 335828259 335828394 3.870000e-31 147
12 TraesCS1D01G272800 chr4B 89.171 591 51 12 3831 4417 267355983 267355402 0.000000e+00 725
13 TraesCS1D01G272800 chr4B 83.065 124 21 0 1501 1624 608967279 608967402 3.930000e-21 113
14 TraesCS1D01G272800 chr5B 89.049 347 27 9 4074 4417 444455682 444455344 2.070000e-113 420
15 TraesCS1D01G272800 chr5B 92.593 81 4 2 4721 4800 635532146 635532225 1.090000e-21 115
16 TraesCS1D01G272800 chr5B 97.015 67 2 0 4732 4798 686848413 686848479 3.930000e-21 113
17 TraesCS1D01G272800 chr4A 83.158 190 32 0 2260 2449 78160742 78160553 1.780000e-39 174
18 TraesCS1D01G272800 chr4D 84.940 166 25 0 2278 2443 396433673 396433508 8.260000e-38 169
19 TraesCS1D01G272800 chr2B 79.891 184 33 4 1501 1682 154234144 154234325 1.080000e-26 132
20 TraesCS1D01G272800 chr2A 80.000 185 31 6 1501 1682 101887665 101887846 1.080000e-26 132
21 TraesCS1D01G272800 chr2A 97.015 67 2 0 4732 4798 718831084 718831150 3.930000e-21 113
22 TraesCS1D01G272800 chr7B 97.143 70 2 0 4732 4801 65313222 65313153 8.440000e-23 119
23 TraesCS1D01G272800 chr7B 95.714 70 3 0 4732 4801 710144165 710144096 3.930000e-21 113
24 TraesCS1D01G272800 chr6A 98.507 67 1 0 4732 4798 255188378 255188444 8.440000e-23 119
25 TraesCS1D01G272800 chr2D 98.507 67 1 0 4732 4798 32767388 32767454 8.440000e-23 119
26 TraesCS1D01G272800 chr2D 97.015 67 2 0 4732 4798 534516133 534516199 3.930000e-21 113
27 TraesCS1D01G272800 chr5A 83.471 121 20 0 1504 1624 662530790 662530670 3.930000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G272800 chr1D 366722326 366727126 4800 False 8866.0 8866 100.0000 1 4801 1 chr1D.!!$F1 4800
1 TraesCS1D01G272800 chr1B 491038051 491042373 4322 True 2793.5 5354 90.8445 71 4313 2 chr1B.!!$R2 4242
2 TraesCS1D01G272800 chr1A 465451487 465456192 4705 True 1091.4 2109 89.2820 22 4449 5 chr1A.!!$R1 4427
3 TraesCS1D01G272800 chr4B 267355402 267355983 581 True 725.0 725 89.1710 3831 4417 1 chr4B.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 1002 0.315251 CTTGCTCACACTCACTCCGA 59.685 55.0 0.0 0.0 0.00 4.55 F
1701 1887 0.740868 GCGTGCCAATAGAGCAGACA 60.741 55.0 0.0 0.0 41.87 3.41 F
2240 2459 0.244450 TCGGTTCGTTAATGGCGAGT 59.756 50.0 0.0 0.0 39.61 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2193 0.249120 TGCGTGGTAGGTGAGATTGG 59.751 55.0 0.00 0.00 0.00 3.16 R
3103 3344 0.248215 CCGGCAATTGCGTCAATCTC 60.248 55.0 23.48 6.66 43.26 2.75 R
3855 4224 0.390340 TGCCTAGAGCTGAACGCAAG 60.390 55.0 0.00 0.00 44.23 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.125106 GAAGTGGGGGCGCTACTG 60.125 66.667 20.76 0.00 0.00 2.74
18 19 3.682292 GAAGTGGGGGCGCTACTGG 62.682 68.421 20.76 0.00 0.00 4.00
19 20 4.715130 AGTGGGGGCGCTACTGGA 62.715 66.667 19.49 0.00 0.00 3.86
20 21 4.162690 GTGGGGGCGCTACTGGAG 62.163 72.222 7.64 0.00 0.00 3.86
21 22 4.715130 TGGGGGCGCTACTGGAGT 62.715 66.667 7.64 0.00 0.00 3.85
22 23 4.162690 GGGGGCGCTACTGGAGTG 62.163 72.222 7.64 0.00 38.83 3.51
27 28 2.261671 CGCTACTGGAGTGCCGTT 59.738 61.111 0.00 0.00 36.79 4.44
28 29 1.374252 CGCTACTGGAGTGCCGTTT 60.374 57.895 0.00 0.00 36.79 3.60
29 30 0.949105 CGCTACTGGAGTGCCGTTTT 60.949 55.000 0.00 0.00 36.79 2.43
30 31 1.670674 CGCTACTGGAGTGCCGTTTTA 60.671 52.381 0.00 0.00 36.79 1.52
31 32 2.629051 GCTACTGGAGTGCCGTTTTAT 58.371 47.619 0.00 0.00 36.79 1.40
38 39 2.093341 GGAGTGCCGTTTTATACTGGGA 60.093 50.000 0.00 0.00 0.00 4.37
40 41 2.570302 AGTGCCGTTTTATACTGGGAGT 59.430 45.455 0.00 0.00 0.00 3.85
48 49 5.699458 CGTTTTATACTGGGAGTGTCAACTT 59.301 40.000 0.00 0.00 36.52 2.66
54 55 1.340502 TGGGAGTGTCAACTTTGTGCA 60.341 47.619 0.00 0.00 36.52 4.57
115 116 6.713792 TTGACTTTTGTTTTGTTTACTGGC 57.286 33.333 0.00 0.00 0.00 4.85
168 173 5.238583 GGCAGCGGAATACTGTAGATTATT 58.761 41.667 0.00 0.00 37.47 1.40
222 230 0.467106 TGCGGAGATGAGAGAGGAGG 60.467 60.000 0.00 0.00 0.00 4.30
225 233 1.545428 CGGAGATGAGAGAGGAGGAGG 60.545 61.905 0.00 0.00 0.00 4.30
265 394 3.989817 CAGTGAAACCTTTTGCTAATGGC 59.010 43.478 11.79 0.00 37.80 4.40
280 409 1.901591 ATGGCAAACACCAGAGACAG 58.098 50.000 0.00 0.00 44.71 3.51
284 413 2.033424 GGCAAACACCAGAGACAGTTTC 59.967 50.000 0.00 0.00 32.34 2.78
286 415 2.618709 CAAACACCAGAGACAGTTTCCC 59.381 50.000 0.00 0.00 32.34 3.97
305 438 1.351017 CCCCCTACTCAAGCAGTGAAA 59.649 52.381 0.00 0.00 36.43 2.69
364 497 2.619074 CCAGAGATTCCCCTCAACAACC 60.619 54.545 0.00 0.00 35.68 3.77
443 576 0.613853 ACCCGATCTCCTCAACCGAA 60.614 55.000 0.00 0.00 0.00 4.30
460 593 0.529555 GAAGGTCCAGATCGAGCTGC 60.530 60.000 24.94 12.20 40.40 5.25
502 635 0.658244 GTGTTCGTCGAGTACACGCA 60.658 55.000 12.94 0.00 40.40 5.24
503 636 0.385098 TGTTCGTCGAGTACACGCAG 60.385 55.000 7.90 4.58 37.18 5.18
527 668 2.553172 AGATAATGCCGAGGAGACGTAC 59.447 50.000 0.00 0.00 0.00 3.67
612 753 5.906772 TTATTTACTCCCAGATCCCTTCC 57.093 43.478 0.00 0.00 0.00 3.46
625 766 1.699634 TCCCTTCCCTTCTGACTTGTG 59.300 52.381 0.00 0.00 0.00 3.33
626 767 1.421646 CCCTTCCCTTCTGACTTGTGT 59.578 52.381 0.00 0.00 0.00 3.72
629 770 3.397482 CTTCCCTTCTGACTTGTGTGAG 58.603 50.000 0.00 0.00 0.00 3.51
642 791 4.700213 ACTTGTGTGAGCTTTTGTTACACT 59.300 37.500 0.00 0.00 41.50 3.55
644 793 5.984233 TGTGTGAGCTTTTGTTACACTAG 57.016 39.130 0.00 0.00 41.50 2.57
647 796 6.700081 TGTGTGAGCTTTTGTTACACTAGTAG 59.300 38.462 0.00 0.00 41.50 2.57
648 797 6.700520 GTGTGAGCTTTTGTTACACTAGTAGT 59.299 38.462 0.00 0.00 38.76 2.73
649 798 7.864379 GTGTGAGCTTTTGTTACACTAGTAGTA 59.136 37.037 1.57 0.00 38.76 1.82
650 799 8.582437 TGTGAGCTTTTGTTACACTAGTAGTAT 58.418 33.333 1.57 0.00 33.41 2.12
804 955 1.297664 CTACCTACACTCTCGTCCCG 58.702 60.000 0.00 0.00 0.00 5.14
848 1002 0.315251 CTTGCTCACACTCACTCCGA 59.685 55.000 0.00 0.00 0.00 4.55
854 1008 0.896019 CACACTCACTCCGACCTCCT 60.896 60.000 0.00 0.00 0.00 3.69
856 1010 1.000646 ACTCACTCCGACCTCCTCC 60.001 63.158 0.00 0.00 0.00 4.30
857 1011 2.045242 TCACTCCGACCTCCTCCG 60.045 66.667 0.00 0.00 0.00 4.63
858 1012 3.141488 CACTCCGACCTCCTCCGG 61.141 72.222 0.00 0.00 46.57 5.14
929 1089 0.809636 CAGTACGATTGGCATGCGGA 60.810 55.000 12.44 2.45 0.00 5.54
1443 1610 3.395702 AAGGACCGGCGCATGGTA 61.396 61.111 21.76 0.00 40.63 3.25
1691 1877 1.391157 AACAACAGGTGCGTGCCAAT 61.391 50.000 0.00 0.00 0.00 3.16
1701 1887 0.740868 GCGTGCCAATAGAGCAGACA 60.741 55.000 0.00 0.00 41.87 3.41
1774 1972 2.015736 TTGTGTTTTTGGCGCATGTT 57.984 40.000 10.83 0.00 0.00 2.71
1913 2111 1.071814 TACGGCACCCAACTCAACC 59.928 57.895 0.00 0.00 0.00 3.77
1914 2112 2.400269 TACGGCACCCAACTCAACCC 62.400 60.000 0.00 0.00 0.00 4.11
1915 2113 2.197324 GGCACCCAACTCAACCCA 59.803 61.111 0.00 0.00 0.00 4.51
1916 2114 1.903404 GGCACCCAACTCAACCCAG 60.903 63.158 0.00 0.00 0.00 4.45
1917 2115 2.564721 GCACCCAACTCAACCCAGC 61.565 63.158 0.00 0.00 0.00 4.85
1922 2120 1.239968 CCAACTCAACCCAGCTGAGC 61.240 60.000 17.39 0.00 43.48 4.26
1923 2121 1.073897 AACTCAACCCAGCTGAGCC 59.926 57.895 17.39 0.00 43.48 4.70
1995 2193 1.237533 GCCTAGCTACGTACTCCTCC 58.762 60.000 0.00 0.00 0.00 4.30
2206 2425 1.463674 ATCTGGTTTGATTGCCGGAC 58.536 50.000 5.05 0.00 42.32 4.79
2227 2446 2.705220 GGCGGCGTTAATCGGTTC 59.295 61.111 9.37 0.00 40.26 3.62
2240 2459 0.244450 TCGGTTCGTTAATGGCGAGT 59.756 50.000 0.00 0.00 39.61 4.18
2249 2468 3.445857 GTTAATGGCGAGTCTGAGTACC 58.554 50.000 0.00 0.00 0.00 3.34
2474 2698 1.338579 CCTCCTTCTCAGCACCTGAAC 60.339 57.143 0.00 0.00 40.18 3.18
2486 2710 0.615331 ACCTGAACTGCATCCATCGT 59.385 50.000 0.00 0.00 0.00 3.73
2489 2713 0.804364 TGAACTGCATCCATCGTTGC 59.196 50.000 0.00 0.00 39.33 4.17
2493 2717 2.173433 TGCATCCATCGTTGCAGTG 58.827 52.632 0.00 0.00 43.54 3.66
2522 2748 5.004726 GCAAAAATGTGAGTTGTGTCTGAAC 59.995 40.000 0.00 0.00 0.00 3.18
2529 2755 5.294306 TGTGAGTTGTGTCTGAACTTGAATC 59.706 40.000 0.00 0.00 33.71 2.52
2543 2769 0.976641 TGAATCGTGTCCCTCTGCTT 59.023 50.000 0.00 0.00 0.00 3.91
2547 2773 1.878953 TCGTGTCCCTCTGCTTTTTC 58.121 50.000 0.00 0.00 0.00 2.29
2624 2850 1.445582 CGTGTACAGCTTCGGGGTC 60.446 63.158 0.00 0.00 0.00 4.46
2705 2932 6.151312 CGGAGGTTATTAGCTAGCTCTGAATA 59.849 42.308 23.26 16.63 44.24 1.75
2783 3020 1.280421 GGGTGCATCTCTCTTCAGGTT 59.720 52.381 0.00 0.00 0.00 3.50
2990 3227 0.258194 ACGACTTCCCCTACCGAGAT 59.742 55.000 0.00 0.00 0.00 2.75
3017 3254 2.003301 CTCGCTGCTTCTTTTACCTCC 58.997 52.381 0.00 0.00 0.00 4.30
3035 3275 5.605534 ACCTCCTTATCATCAAGTCAATCG 58.394 41.667 0.00 0.00 0.00 3.34
3099 3340 8.650143 AACCAAGTCAATTCCAAGTTACATAT 57.350 30.769 0.00 0.00 0.00 1.78
3100 3341 8.055279 ACCAAGTCAATTCCAAGTTACATATG 57.945 34.615 0.00 0.00 0.00 1.78
3101 3342 7.122650 ACCAAGTCAATTCCAAGTTACATATGG 59.877 37.037 7.80 0.00 35.49 2.74
3102 3343 6.699575 AGTCAATTCCAAGTTACATATGGC 57.300 37.500 7.80 0.00 34.13 4.40
3103 3344 5.296780 AGTCAATTCCAAGTTACATATGGCG 59.703 40.000 7.80 0.00 34.13 5.69
3105 3346 5.527214 TCAATTCCAAGTTACATATGGCGAG 59.473 40.000 7.80 0.00 34.13 5.03
3106 3347 4.746535 TTCCAAGTTACATATGGCGAGA 57.253 40.909 7.80 0.00 34.13 4.04
3108 3349 5.290493 TCCAAGTTACATATGGCGAGATT 57.710 39.130 7.80 0.00 34.13 2.40
3109 3350 5.056480 TCCAAGTTACATATGGCGAGATTG 58.944 41.667 7.80 4.51 34.13 2.67
3161 3409 7.568199 AAATGTGTGCCAGTTATACTAATCC 57.432 36.000 0.00 0.00 27.62 3.01
3185 3433 6.404184 CCGTGTGTAAATGCCTGATGATTTTA 60.404 38.462 0.00 0.00 0.00 1.52
3206 3454 0.326264 AAGTGGACACCTCTGCATCC 59.674 55.000 0.00 0.00 0.00 3.51
3351 3608 5.978814 AGTTATCACCATGTTACCTGACTC 58.021 41.667 0.00 0.00 0.00 3.36
3378 3637 0.402504 AACTGCCGTTGGGGATGTTA 59.597 50.000 0.00 0.00 38.47 2.41
3518 3782 1.267806 CGATGCTGTTTTGGCAACTCT 59.732 47.619 0.00 0.00 43.14 3.24
3523 3787 2.351157 GCTGTTTTGGCAACTCTAGCAG 60.351 50.000 15.68 12.38 37.61 4.24
3532 3796 2.759191 CAACTCTAGCAGAAGCACACA 58.241 47.619 0.00 0.00 45.49 3.72
3533 3797 3.332919 CAACTCTAGCAGAAGCACACAT 58.667 45.455 0.00 0.00 45.49 3.21
3535 3799 5.114780 CAACTCTAGCAGAAGCACACATAT 58.885 41.667 0.00 0.00 45.49 1.78
3536 3800 6.276091 CAACTCTAGCAGAAGCACACATATA 58.724 40.000 0.00 0.00 45.49 0.86
3537 3801 6.083098 ACTCTAGCAGAAGCACACATATAG 57.917 41.667 0.00 0.00 45.49 1.31
3538 3802 5.596361 ACTCTAGCAGAAGCACACATATAGT 59.404 40.000 0.00 0.00 45.49 2.12
3540 3804 6.971602 TCTAGCAGAAGCACACATATAGTAC 58.028 40.000 0.00 0.00 45.49 2.73
3559 3916 5.230942 AGTACTATATGTTTCTGCCATCGC 58.769 41.667 0.00 0.00 0.00 4.58
3617 3977 5.799213 ACCAGGACTTGACTCTGAAATTAG 58.201 41.667 0.00 0.00 0.00 1.73
3632 3992 8.337118 TCTGAAATTAGATTTATCCACCCTCT 57.663 34.615 0.00 0.00 31.47 3.69
3633 3993 8.432805 TCTGAAATTAGATTTATCCACCCTCTC 58.567 37.037 0.00 0.00 31.47 3.20
3637 3997 9.942526 AAATTAGATTTATCCACCCTCTCAAAT 57.057 29.630 0.00 0.00 0.00 2.32
3643 4003 3.423539 TCCACCCTCTCAAATTCACAG 57.576 47.619 0.00 0.00 0.00 3.66
3718 4080 2.092699 GTCCCCTGGAGAAATCAAGGAG 60.093 54.545 0.00 0.00 29.39 3.69
3855 4224 2.855180 CGTTGTCAATCACAATGCCTC 58.145 47.619 0.00 0.00 46.90 4.70
3891 4260 1.370900 CAGCTTGGAAACGCAGTGC 60.371 57.895 4.58 4.58 45.00 4.40
3968 4338 0.032615 TTTGTGGAAGCCCTGGTTGT 60.033 50.000 0.00 0.00 0.00 3.32
4039 4409 3.883489 GGTTTGTCTGCTCTTTGTAGGTT 59.117 43.478 0.00 0.00 0.00 3.50
4044 4414 2.548057 TCTGCTCTTTGTAGGTTTTGCG 59.452 45.455 0.00 0.00 0.00 4.85
4098 4468 1.206132 TGCCGGACTGTTGTATAGTGG 59.794 52.381 5.05 0.00 0.00 4.00
4114 4484 9.787435 TTGTATAGTGGATTTTACTCTTGTGTT 57.213 29.630 0.00 0.00 0.00 3.32
4126 4496 8.483307 TTTACTCTTGTGTTAGAACGTTTCTT 57.517 30.769 0.46 0.00 41.14 2.52
4129 4499 3.955771 TGTGTTAGAACGTTTCTTGCC 57.044 42.857 0.46 0.00 41.14 4.52
4130 4500 3.537580 TGTGTTAGAACGTTTCTTGCCT 58.462 40.909 0.46 0.00 41.14 4.75
4132 4502 2.875933 TGTTAGAACGTTTCTTGCCTGG 59.124 45.455 0.46 0.00 41.14 4.45
4234 4760 5.412594 ACAGTACAATCGAAATTGCTCACAT 59.587 36.000 0.00 0.00 45.16 3.21
4237 4763 7.585210 CAGTACAATCGAAATTGCTCACATATG 59.415 37.037 0.00 0.00 45.16 1.78
4242 4768 6.976636 TCGAAATTGCTCACATATGTTACA 57.023 33.333 5.37 1.79 0.00 2.41
4283 4809 1.003003 TGCATGACCGATTGACCTTCA 59.997 47.619 0.00 0.00 0.00 3.02
4284 4810 1.398390 GCATGACCGATTGACCTTCAC 59.602 52.381 0.00 0.00 0.00 3.18
4285 4811 2.698803 CATGACCGATTGACCTTCACA 58.301 47.619 0.00 0.00 0.00 3.58
4391 4922 6.830324 TCATATCTTGGTCTGCAATAGCTTTT 59.170 34.615 0.00 0.00 42.74 2.27
4415 4946 7.953005 TTAAAGATGCTCCCAAATTGATACA 57.047 32.000 0.00 0.00 0.00 2.29
4417 4948 6.461110 AAGATGCTCCCAAATTGATACAAG 57.539 37.500 0.00 0.00 0.00 3.16
4419 4950 2.760092 TGCTCCCAAATTGATACAAGCC 59.240 45.455 0.00 0.00 0.00 4.35
4446 4977 2.902705 TTTGACGTGACTACTGGCTT 57.097 45.000 0.00 0.00 0.00 4.35
4449 4980 3.503827 TGACGTGACTACTGGCTTATG 57.496 47.619 0.00 0.00 0.00 1.90
4450 4981 2.823747 TGACGTGACTACTGGCTTATGT 59.176 45.455 0.00 0.00 0.00 2.29
4451 4982 4.011698 TGACGTGACTACTGGCTTATGTA 58.988 43.478 0.00 0.00 0.00 2.29
4452 4983 4.095932 TGACGTGACTACTGGCTTATGTAG 59.904 45.833 0.00 0.00 41.18 2.74
4454 4985 5.188434 ACGTGACTACTGGCTTATGTAGTA 58.812 41.667 5.88 0.00 46.23 1.82
4455 4986 5.649395 ACGTGACTACTGGCTTATGTAGTAA 59.351 40.000 5.88 0.00 46.23 2.24
4456 4987 6.320672 ACGTGACTACTGGCTTATGTAGTAAT 59.679 38.462 5.88 0.00 46.23 1.89
4457 4988 7.500227 ACGTGACTACTGGCTTATGTAGTAATA 59.500 37.037 5.88 0.00 46.23 0.98
4458 4989 8.512956 CGTGACTACTGGCTTATGTAGTAATAT 58.487 37.037 5.88 0.00 46.23 1.28
4521 5052 9.610104 TTCTATAGGGCTAATATGGACTTTACA 57.390 33.333 0.00 0.00 0.00 2.41
4522 5053 9.784376 TCTATAGGGCTAATATGGACTTTACAT 57.216 33.333 0.00 0.00 0.00 2.29
4524 5055 8.686739 ATAGGGCTAATATGGACTTTACATCT 57.313 34.615 0.00 0.00 0.00 2.90
4525 5056 9.784376 ATAGGGCTAATATGGACTTTACATCTA 57.216 33.333 0.00 0.00 0.00 1.98
4526 5057 7.908453 AGGGCTAATATGGACTTTACATCTAC 58.092 38.462 0.00 0.00 0.00 2.59
4527 5058 7.735321 AGGGCTAATATGGACTTTACATCTACT 59.265 37.037 0.00 0.00 0.00 2.57
4528 5059 9.032624 GGGCTAATATGGACTTTACATCTACTA 57.967 37.037 0.00 0.00 0.00 1.82
4529 5060 9.857957 GGCTAATATGGACTTTACATCTACTAC 57.142 37.037 0.00 0.00 0.00 2.73
4536 5067 9.877178 ATGGACTTTACATCTACTACAAAGAAG 57.123 33.333 0.00 0.00 32.02 2.85
4537 5068 8.311836 TGGACTTTACATCTACTACAAAGAAGG 58.688 37.037 0.00 0.00 32.02 3.46
4538 5069 8.312564 GGACTTTACATCTACTACAAAGAAGGT 58.687 37.037 0.00 0.00 32.02 3.50
4543 5074 9.537852 TTACATCTACTACAAAGAAGGTAAGGA 57.462 33.333 0.00 0.00 30.17 3.36
4544 5075 8.431910 ACATCTACTACAAAGAAGGTAAGGAA 57.568 34.615 0.00 0.00 0.00 3.36
4545 5076 8.532819 ACATCTACTACAAAGAAGGTAAGGAAG 58.467 37.037 0.00 0.00 0.00 3.46
4546 5077 6.932947 TCTACTACAAAGAAGGTAAGGAAGC 58.067 40.000 0.00 0.00 0.00 3.86
4547 5078 5.827326 ACTACAAAGAAGGTAAGGAAGCT 57.173 39.130 0.00 0.00 37.60 3.74
4548 5079 6.930068 ACTACAAAGAAGGTAAGGAAGCTA 57.070 37.500 0.00 0.00 33.87 3.32
4549 5080 6.937392 ACTACAAAGAAGGTAAGGAAGCTAG 58.063 40.000 0.00 0.00 33.87 3.42
4550 5081 5.167303 ACAAAGAAGGTAAGGAAGCTAGG 57.833 43.478 0.00 0.00 33.87 3.02
4551 5082 4.597940 ACAAAGAAGGTAAGGAAGCTAGGT 59.402 41.667 0.00 0.00 33.87 3.08
4552 5083 5.073280 ACAAAGAAGGTAAGGAAGCTAGGTT 59.927 40.000 6.94 6.94 33.87 3.50
4553 5084 5.423704 AAGAAGGTAAGGAAGCTAGGTTC 57.576 43.478 23.52 23.52 33.87 3.62
4554 5085 4.426704 AGAAGGTAAGGAAGCTAGGTTCA 58.573 43.478 30.11 12.14 33.87 3.18
4555 5086 4.468153 AGAAGGTAAGGAAGCTAGGTTCAG 59.532 45.833 30.11 0.00 33.87 3.02
4556 5087 2.502130 AGGTAAGGAAGCTAGGTTCAGC 59.498 50.000 30.11 20.86 42.12 4.26
4563 5094 3.259832 GCTAGGTTCAGCTAGTCGC 57.740 57.895 13.29 0.00 38.57 5.19
4579 5110 7.521509 GCTAGTCGCTAAATCAAGAAAGTAA 57.478 36.000 0.00 0.00 35.14 2.24
4580 5111 7.614026 GCTAGTCGCTAAATCAAGAAAGTAAG 58.386 38.462 0.00 0.00 35.14 2.34
4581 5112 7.275999 GCTAGTCGCTAAATCAAGAAAGTAAGT 59.724 37.037 0.00 0.00 35.14 2.24
4582 5113 9.784680 CTAGTCGCTAAATCAAGAAAGTAAGTA 57.215 33.333 0.00 0.00 0.00 2.24
4584 5115 9.141400 AGTCGCTAAATCAAGAAAGTAAGTAAG 57.859 33.333 0.00 0.00 0.00 2.34
4585 5116 9.136952 GTCGCTAAATCAAGAAAGTAAGTAAGA 57.863 33.333 0.00 0.00 0.00 2.10
4586 5117 9.701098 TCGCTAAATCAAGAAAGTAAGTAAGAA 57.299 29.630 0.00 0.00 0.00 2.52
4610 5141 9.696917 GAAAAGCAAAATATATTACCCTCATGG 57.303 33.333 0.00 0.00 41.37 3.66
4611 5142 9.432982 AAAAGCAAAATATATTACCCTCATGGA 57.567 29.630 0.00 0.00 38.00 3.41
4612 5143 9.605951 AAAGCAAAATATATTACCCTCATGGAT 57.394 29.630 0.00 0.00 38.00 3.41
4613 5144 8.585471 AGCAAAATATATTACCCTCATGGATG 57.415 34.615 0.00 0.00 38.00 3.51
4614 5145 8.172741 AGCAAAATATATTACCCTCATGGATGT 58.827 33.333 0.00 0.00 38.00 3.06
4615 5146 8.806146 GCAAAATATATTACCCTCATGGATGTT 58.194 33.333 0.00 0.00 38.00 2.71
4618 5149 9.881773 AAATATATTACCCTCATGGATGTTTGT 57.118 29.630 0.00 0.00 38.00 2.83
4619 5150 9.881773 AATATATTACCCTCATGGATGTTTGTT 57.118 29.630 0.00 0.00 38.00 2.83
4621 5152 8.924511 ATATTACCCTCATGGATGTTTGTTAG 57.075 34.615 0.00 0.00 38.00 2.34
4622 5153 4.927267 ACCCTCATGGATGTTTGTTAGA 57.073 40.909 0.00 0.00 38.00 2.10
4623 5154 5.456921 ACCCTCATGGATGTTTGTTAGAT 57.543 39.130 0.00 0.00 38.00 1.98
4624 5155 6.575244 ACCCTCATGGATGTTTGTTAGATA 57.425 37.500 0.00 0.00 38.00 1.98
4625 5156 6.357367 ACCCTCATGGATGTTTGTTAGATAC 58.643 40.000 0.00 0.00 38.00 2.24
4626 5157 5.466728 CCCTCATGGATGTTTGTTAGATACG 59.533 44.000 0.00 0.00 35.39 3.06
4627 5158 6.280643 CCTCATGGATGTTTGTTAGATACGA 58.719 40.000 0.00 0.00 34.57 3.43
4628 5159 6.201044 CCTCATGGATGTTTGTTAGATACGAC 59.799 42.308 0.00 0.00 34.57 4.34
4629 5160 5.746721 TCATGGATGTTTGTTAGATACGACG 59.253 40.000 0.00 0.00 0.00 5.12
4630 5161 5.063180 TGGATGTTTGTTAGATACGACGT 57.937 39.130 5.52 5.52 0.00 4.34
4631 5162 5.472148 TGGATGTTTGTTAGATACGACGTT 58.528 37.500 5.50 0.00 0.00 3.99
4632 5163 5.574055 TGGATGTTTGTTAGATACGACGTTC 59.426 40.000 5.50 3.93 0.00 3.95
4633 5164 5.005107 GGATGTTTGTTAGATACGACGTTCC 59.995 44.000 5.50 0.00 0.00 3.62
4634 5165 4.869215 TGTTTGTTAGATACGACGTTCCA 58.131 39.130 5.50 0.00 0.00 3.53
4635 5166 5.288015 TGTTTGTTAGATACGACGTTCCAA 58.712 37.500 5.50 1.82 0.00 3.53
4636 5167 5.752472 TGTTTGTTAGATACGACGTTCCAAA 59.248 36.000 5.50 7.23 0.00 3.28
4637 5168 6.074195 TGTTTGTTAGATACGACGTTCCAAAG 60.074 38.462 5.50 0.00 0.00 2.77
4638 5169 5.375417 TGTTAGATACGACGTTCCAAAGA 57.625 39.130 5.50 0.00 0.00 2.52
4639 5170 5.957798 TGTTAGATACGACGTTCCAAAGAT 58.042 37.500 5.50 0.00 0.00 2.40
4640 5171 6.032094 TGTTAGATACGACGTTCCAAAGATC 58.968 40.000 5.50 0.77 0.00 2.75
4641 5172 4.713824 AGATACGACGTTCCAAAGATCA 57.286 40.909 5.50 0.00 0.00 2.92
4642 5173 5.068234 AGATACGACGTTCCAAAGATCAA 57.932 39.130 5.50 0.00 0.00 2.57
4643 5174 5.103000 AGATACGACGTTCCAAAGATCAAG 58.897 41.667 5.50 0.00 0.00 3.02
4644 5175 3.380479 ACGACGTTCCAAAGATCAAGA 57.620 42.857 0.00 0.00 0.00 3.02
4645 5176 3.318017 ACGACGTTCCAAAGATCAAGAG 58.682 45.455 0.00 0.00 0.00 2.85
4646 5177 2.668457 CGACGTTCCAAAGATCAAGAGG 59.332 50.000 0.00 0.00 0.00 3.69
4647 5178 2.416893 GACGTTCCAAAGATCAAGAGGC 59.583 50.000 0.00 0.00 0.00 4.70
4648 5179 2.039084 ACGTTCCAAAGATCAAGAGGCT 59.961 45.455 0.00 0.00 0.00 4.58
4649 5180 2.417933 CGTTCCAAAGATCAAGAGGCTG 59.582 50.000 0.00 0.00 0.00 4.85
4650 5181 3.679389 GTTCCAAAGATCAAGAGGCTGA 58.321 45.455 0.00 0.00 0.00 4.26
4651 5182 4.268359 GTTCCAAAGATCAAGAGGCTGAT 58.732 43.478 0.00 0.00 38.79 2.90
4652 5183 4.581309 TCCAAAGATCAAGAGGCTGATT 57.419 40.909 0.00 0.00 36.15 2.57
4653 5184 4.267536 TCCAAAGATCAAGAGGCTGATTG 58.732 43.478 0.00 0.00 36.15 2.67
4654 5185 4.015084 CCAAAGATCAAGAGGCTGATTGT 58.985 43.478 0.00 0.00 36.15 2.71
4655 5186 4.461781 CCAAAGATCAAGAGGCTGATTGTT 59.538 41.667 0.00 0.00 36.15 2.83
4656 5187 5.399858 CAAAGATCAAGAGGCTGATTGTTG 58.600 41.667 0.00 0.00 36.15 3.33
4657 5188 3.618351 AGATCAAGAGGCTGATTGTTGG 58.382 45.455 0.00 0.00 36.15 3.77
4658 5189 1.538047 TCAAGAGGCTGATTGTTGGC 58.462 50.000 0.00 0.00 0.00 4.52
4659 5190 1.202915 TCAAGAGGCTGATTGTTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
4660 5191 1.614903 CAAGAGGCTGATTGTTGGCAA 59.385 47.619 0.00 0.00 39.16 4.52
4661 5192 1.542492 AGAGGCTGATTGTTGGCAAG 58.458 50.000 0.00 0.00 38.10 4.01
4662 5193 1.202976 AGAGGCTGATTGTTGGCAAGT 60.203 47.619 0.00 0.00 38.10 3.16
4663 5194 0.963962 AGGCTGATTGTTGGCAAGTG 59.036 50.000 0.00 0.00 38.10 3.16
4664 5195 0.668401 GGCTGATTGTTGGCAAGTGC 60.668 55.000 0.00 0.00 38.10 4.40
4665 5196 0.032403 GCTGATTGTTGGCAAGTGCA 59.968 50.000 0.00 0.00 44.36 4.57
4666 5197 1.538634 GCTGATTGTTGGCAAGTGCAA 60.539 47.619 0.00 1.70 44.36 4.08
4667 5198 2.823984 CTGATTGTTGGCAAGTGCAAA 58.176 42.857 0.00 0.00 44.36 3.68
4668 5199 2.798283 CTGATTGTTGGCAAGTGCAAAG 59.202 45.455 0.00 0.00 44.36 2.77
4669 5200 2.429971 TGATTGTTGGCAAGTGCAAAGA 59.570 40.909 0.00 0.00 44.36 2.52
4670 5201 3.118847 TGATTGTTGGCAAGTGCAAAGAA 60.119 39.130 0.00 5.54 40.77 2.52
4671 5202 3.540314 TTGTTGGCAAGTGCAAAGAAT 57.460 38.095 0.00 0.00 44.36 2.40
4672 5203 3.540314 TGTTGGCAAGTGCAAAGAATT 57.460 38.095 0.00 0.00 44.36 2.17
4673 5204 3.196463 TGTTGGCAAGTGCAAAGAATTG 58.804 40.909 0.00 0.00 44.36 2.32
4674 5205 2.529780 TGGCAAGTGCAAAGAATTGG 57.470 45.000 5.52 0.00 44.36 3.16
4675 5206 2.037901 TGGCAAGTGCAAAGAATTGGA 58.962 42.857 5.52 0.00 44.36 3.53
4676 5207 2.633967 TGGCAAGTGCAAAGAATTGGAT 59.366 40.909 5.52 0.00 44.36 3.41
4677 5208 3.831333 TGGCAAGTGCAAAGAATTGGATA 59.169 39.130 5.52 0.00 44.36 2.59
4678 5209 4.176271 GGCAAGTGCAAAGAATTGGATAC 58.824 43.478 5.52 0.00 44.36 2.24
4679 5210 4.176271 GCAAGTGCAAAGAATTGGATACC 58.824 43.478 0.00 0.00 39.21 2.73
4680 5211 4.321899 GCAAGTGCAAAGAATTGGATACCA 60.322 41.667 0.00 0.00 39.21 3.25
4681 5212 5.796406 GCAAGTGCAAAGAATTGGATACCAA 60.796 40.000 5.68 5.68 43.66 3.67
4701 5232 4.640364 CAATTGGTTGGCTAACAATTGGT 58.360 39.130 31.55 5.65 41.95 3.67
4702 5233 4.972751 ATTGGTTGGCTAACAATTGGTT 57.027 36.364 15.34 4.62 41.95 3.67
4703 5234 4.762289 TTGGTTGGCTAACAATTGGTTT 57.238 36.364 15.34 0.00 41.95 3.27
4704 5235 4.762289 TGGTTGGCTAACAATTGGTTTT 57.238 36.364 15.34 0.00 41.95 2.43
4705 5236 5.104259 TGGTTGGCTAACAATTGGTTTTT 57.896 34.783 15.34 0.00 41.95 1.94
4706 5237 4.878397 TGGTTGGCTAACAATTGGTTTTTG 59.122 37.500 15.34 0.00 41.95 2.44
4707 5238 4.260990 GGTTGGCTAACAATTGGTTTTTGC 60.261 41.667 15.34 7.65 41.95 3.68
4708 5239 3.471680 TGGCTAACAATTGGTTTTTGCC 58.528 40.909 19.07 19.07 43.33 4.52
4709 5240 3.118261 TGGCTAACAATTGGTTTTTGCCA 60.118 39.130 22.44 22.44 46.65 4.92
4718 5249 4.494091 TTGGTTTTTGCCAATCTCCAAA 57.506 36.364 5.63 0.00 42.98 3.28
4719 5250 4.494091 TGGTTTTTGCCAATCTCCAAAA 57.506 36.364 0.00 0.00 38.67 2.44
4720 5251 4.848357 TGGTTTTTGCCAATCTCCAAAAA 58.152 34.783 7.06 7.06 44.18 1.94
4756 5287 2.873367 CTCGAATATGCACGAGCGT 58.127 52.632 10.95 4.63 46.54 5.07
4757 5288 0.500178 CTCGAATATGCACGAGCGTG 59.500 55.000 17.85 17.85 46.54 5.34
4774 5305 9.835315 CACGAGCGTGCATATTATATATTAAAG 57.165 33.333 10.25 0.00 39.39 1.85
4775 5306 9.797556 ACGAGCGTGCATATTATATATTAAAGA 57.202 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.125106 CAGTAGCGCCCCCACTTC 60.125 66.667 2.29 0.00 0.00 3.01
1 2 3.717294 CCAGTAGCGCCCCCACTT 61.717 66.667 2.29 0.00 0.00 3.16
2 3 4.715130 TCCAGTAGCGCCCCCACT 62.715 66.667 2.29 0.00 0.00 4.00
3 4 4.162690 CTCCAGTAGCGCCCCCAC 62.163 72.222 2.29 0.00 0.00 4.61
4 5 4.715130 ACTCCAGTAGCGCCCCCA 62.715 66.667 2.29 0.00 0.00 4.96
5 6 4.162690 CACTCCAGTAGCGCCCCC 62.163 72.222 2.29 0.00 0.00 5.40
6 7 4.840005 GCACTCCAGTAGCGCCCC 62.840 72.222 2.29 0.00 0.00 5.80
7 8 4.840005 GGCACTCCAGTAGCGCCC 62.840 72.222 2.29 0.00 46.10 6.13
10 11 0.949105 AAAACGGCACTCCAGTAGCG 60.949 55.000 0.00 0.00 0.00 4.26
11 12 2.088950 TAAAACGGCACTCCAGTAGC 57.911 50.000 0.00 0.00 0.00 3.58
12 13 4.804139 CAGTATAAAACGGCACTCCAGTAG 59.196 45.833 0.00 0.00 0.00 2.57
13 14 4.382254 CCAGTATAAAACGGCACTCCAGTA 60.382 45.833 0.00 0.00 0.00 2.74
14 15 3.596214 CAGTATAAAACGGCACTCCAGT 58.404 45.455 0.00 0.00 0.00 4.00
15 16 2.936498 CCAGTATAAAACGGCACTCCAG 59.064 50.000 0.00 0.00 0.00 3.86
16 17 2.355310 CCCAGTATAAAACGGCACTCCA 60.355 50.000 0.00 0.00 0.00 3.86
17 18 2.093341 TCCCAGTATAAAACGGCACTCC 60.093 50.000 0.00 0.00 0.00 3.85
18 19 3.195661 CTCCCAGTATAAAACGGCACTC 58.804 50.000 0.00 0.00 0.00 3.51
19 20 2.570302 ACTCCCAGTATAAAACGGCACT 59.430 45.455 0.00 0.00 0.00 4.40
20 21 2.676342 CACTCCCAGTATAAAACGGCAC 59.324 50.000 0.00 0.00 0.00 5.01
21 22 2.303600 ACACTCCCAGTATAAAACGGCA 59.696 45.455 0.00 0.00 0.00 5.69
22 23 2.934553 GACACTCCCAGTATAAAACGGC 59.065 50.000 0.00 0.00 0.00 5.68
23 24 4.196626 TGACACTCCCAGTATAAAACGG 57.803 45.455 0.00 0.00 0.00 4.44
24 25 5.235516 AGTTGACACTCCCAGTATAAAACG 58.764 41.667 0.00 0.00 0.00 3.60
25 26 7.012989 ACAAAGTTGACACTCCCAGTATAAAAC 59.987 37.037 0.00 0.00 30.45 2.43
26 27 7.012894 CACAAAGTTGACACTCCCAGTATAAAA 59.987 37.037 0.00 0.00 30.45 1.52
27 28 6.485313 CACAAAGTTGACACTCCCAGTATAAA 59.515 38.462 0.00 0.00 30.45 1.40
28 29 5.995282 CACAAAGTTGACACTCCCAGTATAA 59.005 40.000 0.00 0.00 30.45 0.98
29 30 5.547465 CACAAAGTTGACACTCCCAGTATA 58.453 41.667 0.00 0.00 30.45 1.47
30 31 4.389374 CACAAAGTTGACACTCCCAGTAT 58.611 43.478 0.00 0.00 30.45 2.12
31 32 3.804036 CACAAAGTTGACACTCCCAGTA 58.196 45.455 0.00 0.00 30.45 2.74
38 39 3.255642 ACTTGTTGCACAAAGTTGACACT 59.744 39.130 7.27 0.00 37.69 3.55
40 41 3.005261 ACACTTGTTGCACAAAGTTGACA 59.995 39.130 9.90 0.00 37.69 3.58
59 60 7.571428 GCATTAAGACAAGAGGACAAGTTACAC 60.571 40.741 0.00 0.00 0.00 2.90
64 65 4.042187 AGGCATTAAGACAAGAGGACAAGT 59.958 41.667 0.00 0.00 0.00 3.16
115 116 1.834188 ATGGGTTTTGCCGTCTAAGG 58.166 50.000 0.00 0.00 38.44 2.69
125 126 3.682377 GCCGACCAATTAAATGGGTTTTG 59.318 43.478 14.11 0.00 45.18 2.44
168 173 4.142093 GGAGGGTGTAATTAAGTCGTGCTA 60.142 45.833 0.00 0.00 0.00 3.49
206 214 1.780309 TCCTCCTCCTCTCTCATCTCC 59.220 57.143 0.00 0.00 0.00 3.71
222 230 0.879765 TTGTCGTTCGTCCTCTCCTC 59.120 55.000 0.00 0.00 0.00 3.71
225 233 0.039437 TGCTTGTCGTTCGTCCTCTC 60.039 55.000 0.00 0.00 0.00 3.20
265 394 2.618709 GGGAAACTGTCTCTGGTGTTTG 59.381 50.000 0.00 0.00 33.49 2.93
286 415 2.814336 GTTTTCACTGCTTGAGTAGGGG 59.186 50.000 0.00 0.00 34.94 4.79
305 438 1.966845 TGCCTAGCTTAGGGGAAGTT 58.033 50.000 0.00 0.00 46.32 2.66
337 470 1.385206 GGGGAATCTCTGGAGGCCT 60.385 63.158 3.86 3.86 0.00 5.19
364 497 0.239347 CCAAAACCAGAAGCAGAGCG 59.761 55.000 0.00 0.00 0.00 5.03
443 576 1.674764 CTGCAGCTCGATCTGGACCT 61.675 60.000 17.36 0.00 34.74 3.85
500 633 1.615883 TCCTCGGCATTATCTCTCTGC 59.384 52.381 0.00 0.00 35.16 4.26
502 635 3.153919 GTCTCCTCGGCATTATCTCTCT 58.846 50.000 0.00 0.00 0.00 3.10
503 636 2.095466 CGTCTCCTCGGCATTATCTCTC 60.095 54.545 0.00 0.00 0.00 3.20
527 668 4.337145 ACCCTCTGTCTTGTCTGTACTAG 58.663 47.826 0.00 0.00 0.00 2.57
612 753 2.540265 AGCTCACACAAGTCAGAAGG 57.460 50.000 0.00 0.00 0.00 3.46
625 766 8.983307 ATACTACTAGTGTAACAAAAGCTCAC 57.017 34.615 5.39 0.00 41.43 3.51
629 770 9.643693 TTGGTATACTACTAGTGTAACAAAAGC 57.356 33.333 16.88 0.00 43.40 3.51
642 791 6.179756 TGACACGGAGTTTGGTATACTACTA 58.820 40.000 2.25 0.00 41.61 1.82
644 793 5.124457 TCTGACACGGAGTTTGGTATACTAC 59.876 44.000 2.25 0.00 41.61 2.73
647 796 4.445452 TCTGACACGGAGTTTGGTATAC 57.555 45.455 0.00 0.00 41.61 1.47
648 797 5.670792 AATCTGACACGGAGTTTGGTATA 57.329 39.130 0.00 0.00 41.61 1.47
649 798 4.553330 AATCTGACACGGAGTTTGGTAT 57.447 40.909 0.00 0.00 41.61 2.73
650 799 5.232463 GTTAATCTGACACGGAGTTTGGTA 58.768 41.667 0.00 0.00 41.61 3.25
780 930 0.305313 CGAGAGTGTAGGTAGCTCGC 59.695 60.000 0.00 0.00 41.35 5.03
804 955 2.505118 GTGAGAGCACGACGAGCC 60.505 66.667 13.77 5.73 34.94 4.70
910 1070 0.809636 TCCGCATGCCAATCGTACTG 60.810 55.000 13.15 0.00 0.00 2.74
911 1071 0.530650 CTCCGCATGCCAATCGTACT 60.531 55.000 13.15 0.00 0.00 2.73
914 1074 2.514592 CCTCCGCATGCCAATCGT 60.515 61.111 13.15 0.00 0.00 3.73
929 1089 0.031111 TAGTCCTATGCCAGCCACCT 60.031 55.000 0.00 0.00 0.00 4.00
1266 1430 1.203300 TCCTGGATCTCCTTGGACACA 60.203 52.381 0.00 0.00 35.56 3.72
1691 1877 1.137614 CGCGCTCTTGTCTGCTCTA 59.862 57.895 5.56 0.00 0.00 2.43
1717 1903 2.436469 TAGCCACGCACATGCAGG 60.436 61.111 4.49 0.00 42.21 4.85
1718 1904 3.095911 CTAGCCACGCACATGCAG 58.904 61.111 4.49 0.00 42.21 4.41
1900 2098 1.151450 AGCTGGGTTGAGTTGGGTG 59.849 57.895 0.00 0.00 0.00 4.61
1913 2111 4.106925 GTGGAGGGGCTCAGCTGG 62.107 72.222 15.13 5.82 31.08 4.85
1914 2112 3.324930 TGTGGAGGGGCTCAGCTG 61.325 66.667 7.63 7.63 31.08 4.24
1915 2113 3.325753 GTGTGGAGGGGCTCAGCT 61.326 66.667 0.00 0.00 31.08 4.24
1916 2114 4.416738 GGTGTGGAGGGGCTCAGC 62.417 72.222 0.00 0.00 31.08 4.26
1917 2115 2.930019 TGGTGTGGAGGGGCTCAG 60.930 66.667 0.00 0.00 31.08 3.35
1922 2120 2.361610 GCATGTGGTGTGGAGGGG 60.362 66.667 0.00 0.00 0.00 4.79
1923 2121 1.973281 GTGCATGTGGTGTGGAGGG 60.973 63.158 0.00 0.00 0.00 4.30
1929 2127 2.679934 CGATGCGTGCATGTGGTGT 61.680 57.895 12.81 0.00 36.70 4.16
1959 2157 1.563173 GCACAAAGACGGTGTCGAC 59.437 57.895 9.11 9.11 37.67 4.20
1995 2193 0.249120 TGCGTGGTAGGTGAGATTGG 59.751 55.000 0.00 0.00 0.00 3.16
2206 2425 3.327754 CGATTAACGCCGCCGGAG 61.328 66.667 7.68 6.22 39.22 4.63
2219 2438 1.931172 CTCGCCATTAACGAACCGATT 59.069 47.619 0.00 0.00 39.39 3.34
2227 2446 2.279582 ACTCAGACTCGCCATTAACG 57.720 50.000 0.00 0.00 0.00 3.18
2240 2459 0.393944 ACCAGATCGCGGTACTCAGA 60.394 55.000 6.13 0.00 34.02 3.27
2249 2468 0.871722 TGAAACCAAACCAGATCGCG 59.128 50.000 0.00 0.00 0.00 5.87
2445 2664 0.633921 TGAGAAGGAGGAGGAGGGAG 59.366 60.000 0.00 0.00 0.00 4.30
2446 2665 0.633921 CTGAGAAGGAGGAGGAGGGA 59.366 60.000 0.00 0.00 0.00 4.20
2449 2668 0.823460 GTGCTGAGAAGGAGGAGGAG 59.177 60.000 0.00 0.00 0.00 3.69
2450 2669 0.616111 GGTGCTGAGAAGGAGGAGGA 60.616 60.000 0.00 0.00 0.00 3.71
2454 2673 0.979665 TTCAGGTGCTGAGAAGGAGG 59.020 55.000 0.00 0.00 41.75 4.30
2457 2676 1.805869 CAGTTCAGGTGCTGAGAAGG 58.194 55.000 0.00 0.00 41.75 3.46
2489 2713 3.805422 ACTCACATTTTTGCAATGCACTG 59.195 39.130 7.72 6.09 38.71 3.66
2493 2717 4.034279 ACACAACTCACATTTTTGCAATGC 59.966 37.500 0.00 0.00 0.00 3.56
2500 2724 6.515272 AGTTCAGACACAACTCACATTTTT 57.485 33.333 0.00 0.00 27.00 1.94
2522 2748 1.066573 AGCAGAGGGACACGATTCAAG 60.067 52.381 0.00 0.00 0.00 3.02
2529 2755 1.884235 AGAAAAAGCAGAGGGACACG 58.116 50.000 0.00 0.00 0.00 4.49
2543 2769 1.335496 GCCACGTAACTGCCAAGAAAA 59.665 47.619 0.00 0.00 0.00 2.29
2547 2773 2.860293 CGCCACGTAACTGCCAAG 59.140 61.111 0.00 0.00 0.00 3.61
2555 2781 3.061231 TACTCCGGCGCCACGTAA 61.061 61.111 28.98 5.33 0.00 3.18
2591 2817 1.797933 CACGTCGCTCCTCTCGTTG 60.798 63.158 0.00 0.00 34.30 4.10
2687 2913 8.642935 ACAGACATATTCAGAGCTAGCTAATA 57.357 34.615 19.38 17.83 0.00 0.98
2688 2914 7.537596 ACAGACATATTCAGAGCTAGCTAAT 57.462 36.000 19.38 16.18 0.00 1.73
2689 2915 6.968263 ACAGACATATTCAGAGCTAGCTAA 57.032 37.500 19.38 9.24 0.00 3.09
2690 2916 6.968263 AACAGACATATTCAGAGCTAGCTA 57.032 37.500 19.38 1.43 0.00 3.32
2705 2932 3.254166 GCATGACAGACCAAAACAGACAT 59.746 43.478 0.00 0.00 0.00 3.06
2731 2961 6.595326 CACAAGCTATGGTTGAGTTGATTCTA 59.405 38.462 15.04 0.00 42.72 2.10
2739 2969 2.037251 ACGACACAAGCTATGGTTGAGT 59.963 45.455 15.04 12.98 44.44 3.41
2783 3020 1.951209 TCAGCCACTCCACCAGATTA 58.049 50.000 0.00 0.00 0.00 1.75
2990 3227 2.047844 GAAGCAGCGAGGCTCACA 60.048 61.111 15.95 0.00 45.07 3.58
3017 3254 5.624081 GCAATGCGATTGACTTGATGATAAG 59.376 40.000 11.52 0.00 42.83 1.73
3035 3275 3.181484 TGGTATGAGCAAATGAGCAATGC 60.181 43.478 0.00 0.00 40.34 3.56
3090 3331 4.299155 CGTCAATCTCGCCATATGTAACT 58.701 43.478 1.24 0.00 0.00 2.24
3102 3343 0.587242 CGGCAATTGCGTCAATCTCG 60.587 55.000 23.48 14.62 43.26 4.04
3103 3344 0.248215 CCGGCAATTGCGTCAATCTC 60.248 55.000 23.48 6.66 43.26 2.75
3105 3346 1.226660 CCCGGCAATTGCGTCAATC 60.227 57.895 23.48 8.10 43.26 2.67
3106 3347 2.884367 CCCGGCAATTGCGTCAAT 59.116 55.556 23.48 0.09 43.26 2.57
3108 3349 3.613877 TAGCCCGGCAATTGCGTCA 62.614 57.895 23.48 3.28 43.26 4.35
3109 3350 2.822255 TAGCCCGGCAATTGCGTC 60.822 61.111 23.48 10.28 43.26 5.19
3161 3409 4.621068 AATCATCAGGCATTTACACACG 57.379 40.909 0.00 0.00 0.00 4.49
3185 3433 2.508526 GATGCAGAGGTGTCCACTTTT 58.491 47.619 0.00 0.00 0.00 2.27
3227 3478 0.698238 TAAACCCTGATGCACCTGCT 59.302 50.000 0.00 0.00 42.66 4.24
3351 3608 1.572085 CCAACGGCAGTTCAGAGCAG 61.572 60.000 0.00 0.00 38.79 4.24
3378 3637 8.713271 GTTCTTTTTCGAGATGACAGAGTAATT 58.287 33.333 0.00 0.00 0.00 1.40
3482 3746 2.159517 GCATCGGATCAAGTCACCAAAC 60.160 50.000 0.00 0.00 0.00 2.93
3518 3782 6.961360 AGTACTATATGTGTGCTTCTGCTA 57.039 37.500 0.00 0.00 40.48 3.49
3533 3797 8.188799 GCGATGGCAGAAACATATAGTACTATA 58.811 37.037 21.91 21.91 39.62 1.31
3535 3799 6.015772 TGCGATGGCAGAAACATATAGTACTA 60.016 38.462 4.77 4.77 46.21 1.82
3536 3800 5.221441 TGCGATGGCAGAAACATATAGTACT 60.221 40.000 0.00 0.00 46.21 2.73
3537 3801 4.988540 TGCGATGGCAGAAACATATAGTAC 59.011 41.667 0.00 0.00 46.21 2.73
3538 3802 5.208463 TGCGATGGCAGAAACATATAGTA 57.792 39.130 0.00 0.00 46.21 1.82
3554 3911 1.349627 GCAGAATGACGGTGCGATG 59.650 57.895 0.00 0.00 39.69 3.84
3559 3916 2.014335 TGAGATGCAGAATGACGGTG 57.986 50.000 0.00 0.00 39.69 4.94
3617 3977 6.603201 TGTGAATTTGAGAGGGTGGATAAATC 59.397 38.462 0.00 0.00 0.00 2.17
3718 4080 1.450312 CCTGATTCTGTCACCGGCC 60.450 63.158 0.00 0.00 32.22 6.13
3855 4224 0.390340 TGCCTAGAGCTGAACGCAAG 60.390 55.000 0.00 0.00 44.23 4.01
3891 4260 3.789224 GCACCGACAAAAACAAGTTACAG 59.211 43.478 0.00 0.00 0.00 2.74
3968 4338 1.202964 TGACCTACACCCTCGACAGAA 60.203 52.381 0.00 0.00 0.00 3.02
4039 4409 4.514585 AGGGGGTGTGCACGCAAA 62.515 61.111 29.97 0.97 44.89 3.68
4098 4468 9.366513 GAAACGTTCTAACACAAGAGTAAAATC 57.633 33.333 0.00 0.00 0.00 2.17
4114 4484 3.260884 AGATCCAGGCAAGAAACGTTCTA 59.739 43.478 0.00 0.00 39.61 2.10
4126 4496 3.500448 TTTGTACACAAGATCCAGGCA 57.500 42.857 0.00 0.00 37.15 4.75
4129 4499 5.527214 TCACAGTTTTGTACACAAGATCCAG 59.473 40.000 0.00 0.00 37.15 3.86
4130 4500 5.432645 TCACAGTTTTGTACACAAGATCCA 58.567 37.500 0.00 0.00 37.15 3.41
4132 4502 6.604735 ACTCACAGTTTTGTACACAAGATC 57.395 37.500 0.00 0.00 37.15 2.75
4206 4732 6.425417 TGAGCAATTTCGATTGTACTGTGTTA 59.575 34.615 1.06 0.00 34.21 2.41
4218 4744 7.552458 TGTAACATATGTGAGCAATTTCGAT 57.448 32.000 9.63 0.00 0.00 3.59
4226 4752 6.625873 TGTTGTTTGTAACATATGTGAGCA 57.374 33.333 9.63 6.17 41.79 4.26
4227 4753 8.427012 CAATTGTTGTTTGTAACATATGTGAGC 58.573 33.333 9.63 3.52 41.79 4.26
4363 4894 3.632643 TTGCAGACCAAGATATGAGCA 57.367 42.857 0.00 0.00 0.00 4.26
4391 4922 7.953005 TGTATCAATTTGGGAGCATCTTTAA 57.047 32.000 0.00 0.00 33.73 1.52
4495 5026 9.610104 TGTAAAGTCCATATTAGCCCTATAGAA 57.390 33.333 0.00 0.00 0.00 2.10
4496 5027 9.784376 ATGTAAAGTCCATATTAGCCCTATAGA 57.216 33.333 0.00 0.00 0.00 1.98
4498 5029 9.784376 AGATGTAAAGTCCATATTAGCCCTATA 57.216 33.333 0.00 0.00 0.00 1.31
4499 5030 8.686739 AGATGTAAAGTCCATATTAGCCCTAT 57.313 34.615 0.00 0.00 0.00 2.57
4500 5031 9.032624 GTAGATGTAAAGTCCATATTAGCCCTA 57.967 37.037 0.00 0.00 0.00 3.53
4501 5032 7.735321 AGTAGATGTAAAGTCCATATTAGCCCT 59.265 37.037 0.00 0.00 0.00 5.19
4502 5033 7.908453 AGTAGATGTAAAGTCCATATTAGCCC 58.092 38.462 0.00 0.00 0.00 5.19
4503 5034 9.857957 GTAGTAGATGTAAAGTCCATATTAGCC 57.142 37.037 0.00 0.00 0.00 3.93
4510 5041 9.877178 CTTCTTTGTAGTAGATGTAAAGTCCAT 57.123 33.333 0.00 0.00 31.95 3.41
4511 5042 8.311836 CCTTCTTTGTAGTAGATGTAAAGTCCA 58.688 37.037 0.00 0.00 31.95 4.02
4512 5043 8.312564 ACCTTCTTTGTAGTAGATGTAAAGTCC 58.687 37.037 0.00 0.00 31.95 3.85
4517 5048 9.537852 TCCTTACCTTCTTTGTAGTAGATGTAA 57.462 33.333 0.00 0.00 0.00 2.41
4518 5049 9.537852 TTCCTTACCTTCTTTGTAGTAGATGTA 57.462 33.333 0.00 0.00 0.00 2.29
4519 5050 8.431910 TTCCTTACCTTCTTTGTAGTAGATGT 57.568 34.615 0.00 0.00 0.00 3.06
4520 5051 7.492994 GCTTCCTTACCTTCTTTGTAGTAGATG 59.507 40.741 0.00 0.00 0.00 2.90
4521 5052 7.400627 AGCTTCCTTACCTTCTTTGTAGTAGAT 59.599 37.037 0.00 0.00 0.00 1.98
4522 5053 6.724905 AGCTTCCTTACCTTCTTTGTAGTAGA 59.275 38.462 0.00 0.00 0.00 2.59
4523 5054 6.937392 AGCTTCCTTACCTTCTTTGTAGTAG 58.063 40.000 0.00 0.00 0.00 2.57
4524 5055 6.930068 AGCTTCCTTACCTTCTTTGTAGTA 57.070 37.500 0.00 0.00 0.00 1.82
4525 5056 5.827326 AGCTTCCTTACCTTCTTTGTAGT 57.173 39.130 0.00 0.00 0.00 2.73
4526 5057 6.070710 ACCTAGCTTCCTTACCTTCTTTGTAG 60.071 42.308 0.00 0.00 0.00 2.74
4527 5058 5.783875 ACCTAGCTTCCTTACCTTCTTTGTA 59.216 40.000 0.00 0.00 0.00 2.41
4528 5059 4.597940 ACCTAGCTTCCTTACCTTCTTTGT 59.402 41.667 0.00 0.00 0.00 2.83
4529 5060 5.167303 ACCTAGCTTCCTTACCTTCTTTG 57.833 43.478 0.00 0.00 0.00 2.77
4530 5061 5.309806 TGAACCTAGCTTCCTTACCTTCTTT 59.690 40.000 0.00 0.00 0.00 2.52
4531 5062 4.844655 TGAACCTAGCTTCCTTACCTTCTT 59.155 41.667 0.00 0.00 0.00 2.52
4532 5063 4.426704 TGAACCTAGCTTCCTTACCTTCT 58.573 43.478 0.00 0.00 0.00 2.85
4533 5064 4.760878 CTGAACCTAGCTTCCTTACCTTC 58.239 47.826 0.00 0.00 0.00 3.46
4534 5065 3.055021 GCTGAACCTAGCTTCCTTACCTT 60.055 47.826 0.00 0.00 40.52 3.50
4535 5066 2.502130 GCTGAACCTAGCTTCCTTACCT 59.498 50.000 0.00 0.00 40.52 3.08
4536 5067 2.907634 GCTGAACCTAGCTTCCTTACC 58.092 52.381 0.00 0.00 40.52 2.85
4545 5076 3.259832 GCGACTAGCTGAACCTAGC 57.740 57.895 0.00 0.00 44.04 3.42
4556 5087 8.690680 ACTTACTTTCTTGATTTAGCGACTAG 57.309 34.615 0.00 0.00 0.00 2.57
4558 5089 9.141400 CTTACTTACTTTCTTGATTTAGCGACT 57.859 33.333 0.00 0.00 0.00 4.18
4559 5090 9.136952 TCTTACTTACTTTCTTGATTTAGCGAC 57.863 33.333 0.00 0.00 0.00 5.19
4560 5091 9.701098 TTCTTACTTACTTTCTTGATTTAGCGA 57.299 29.630 0.00 0.00 0.00 4.93
4584 5115 9.696917 CCATGAGGGTAATATATTTTGCTTTTC 57.303 33.333 2.68 0.00 0.00 2.29
4585 5116 9.432982 TCCATGAGGGTAATATATTTTGCTTTT 57.567 29.630 2.68 0.00 38.11 2.27
4586 5117 9.605951 ATCCATGAGGGTAATATATTTTGCTTT 57.394 29.630 2.68 0.00 38.11 3.51
4587 5118 9.028284 CATCCATGAGGGTAATATATTTTGCTT 57.972 33.333 2.68 0.00 38.11 3.91
4588 5119 8.172741 ACATCCATGAGGGTAATATATTTTGCT 58.827 33.333 2.68 0.00 38.11 3.91
4589 5120 8.353423 ACATCCATGAGGGTAATATATTTTGC 57.647 34.615 2.68 0.00 38.11 3.68
4592 5123 9.881773 ACAAACATCCATGAGGGTAATATATTT 57.118 29.630 2.68 0.00 38.11 1.40
4593 5124 9.881773 AACAAACATCCATGAGGGTAATATATT 57.118 29.630 2.97 2.97 38.11 1.28
4596 5127 8.723365 TCTAACAAACATCCATGAGGGTAATAT 58.277 33.333 0.00 0.00 38.11 1.28
4597 5128 8.096621 TCTAACAAACATCCATGAGGGTAATA 57.903 34.615 0.00 0.00 38.11 0.98
4598 5129 6.969043 TCTAACAAACATCCATGAGGGTAAT 58.031 36.000 0.00 0.00 38.11 1.89
4599 5130 6.381498 TCTAACAAACATCCATGAGGGTAA 57.619 37.500 0.00 0.00 38.11 2.85
4600 5131 6.575244 ATCTAACAAACATCCATGAGGGTA 57.425 37.500 0.00 0.00 38.11 3.69
4601 5132 4.927267 TCTAACAAACATCCATGAGGGT 57.073 40.909 0.00 0.00 38.11 4.34
4602 5133 5.466728 CGTATCTAACAAACATCCATGAGGG 59.533 44.000 0.00 0.00 34.83 4.30
4603 5134 6.201044 GTCGTATCTAACAAACATCCATGAGG 59.799 42.308 0.00 0.00 0.00 3.86
4604 5135 6.074835 CGTCGTATCTAACAAACATCCATGAG 60.075 42.308 0.00 0.00 0.00 2.90
4605 5136 5.746721 CGTCGTATCTAACAAACATCCATGA 59.253 40.000 0.00 0.00 0.00 3.07
4606 5137 5.518847 ACGTCGTATCTAACAAACATCCATG 59.481 40.000 0.00 0.00 0.00 3.66
4607 5138 5.657474 ACGTCGTATCTAACAAACATCCAT 58.343 37.500 0.00 0.00 0.00 3.41
4608 5139 5.063180 ACGTCGTATCTAACAAACATCCA 57.937 39.130 0.00 0.00 0.00 3.41
4609 5140 5.005107 GGAACGTCGTATCTAACAAACATCC 59.995 44.000 0.00 0.00 0.00 3.51
4610 5141 5.574055 TGGAACGTCGTATCTAACAAACATC 59.426 40.000 0.00 0.00 0.00 3.06
4611 5142 5.472148 TGGAACGTCGTATCTAACAAACAT 58.528 37.500 0.00 0.00 0.00 2.71
4612 5143 4.869215 TGGAACGTCGTATCTAACAAACA 58.131 39.130 0.00 0.00 0.00 2.83
4613 5144 5.827568 TTGGAACGTCGTATCTAACAAAC 57.172 39.130 0.00 0.00 0.00 2.93
4614 5145 6.215121 TCTTTGGAACGTCGTATCTAACAAA 58.785 36.000 0.00 4.01 0.00 2.83
4615 5146 5.771469 TCTTTGGAACGTCGTATCTAACAA 58.229 37.500 0.00 0.00 0.00 2.83
4616 5147 5.375417 TCTTTGGAACGTCGTATCTAACA 57.625 39.130 0.00 0.00 0.00 2.41
4617 5148 6.032094 TGATCTTTGGAACGTCGTATCTAAC 58.968 40.000 0.00 0.00 0.00 2.34
4618 5149 6.198650 TGATCTTTGGAACGTCGTATCTAA 57.801 37.500 0.00 0.53 0.00 2.10
4619 5150 5.823209 TGATCTTTGGAACGTCGTATCTA 57.177 39.130 0.00 0.00 0.00 1.98
4620 5151 4.713824 TGATCTTTGGAACGTCGTATCT 57.286 40.909 0.00 0.00 0.00 1.98
4621 5152 5.100259 TCTTGATCTTTGGAACGTCGTATC 58.900 41.667 0.00 0.00 0.00 2.24
4622 5153 5.068234 TCTTGATCTTTGGAACGTCGTAT 57.932 39.130 0.00 0.00 0.00 3.06
4623 5154 4.482386 CTCTTGATCTTTGGAACGTCGTA 58.518 43.478 0.00 0.00 0.00 3.43
4624 5155 3.318017 CTCTTGATCTTTGGAACGTCGT 58.682 45.455 0.00 0.00 0.00 4.34
4625 5156 2.668457 CCTCTTGATCTTTGGAACGTCG 59.332 50.000 0.00 0.00 0.00 5.12
4626 5157 2.416893 GCCTCTTGATCTTTGGAACGTC 59.583 50.000 0.00 0.00 0.00 4.34
4627 5158 2.039084 AGCCTCTTGATCTTTGGAACGT 59.961 45.455 0.00 0.00 0.00 3.99
4628 5159 2.417933 CAGCCTCTTGATCTTTGGAACG 59.582 50.000 0.00 0.00 0.00 3.95
4629 5160 3.679389 TCAGCCTCTTGATCTTTGGAAC 58.321 45.455 0.00 0.00 0.00 3.62
4630 5161 4.581309 ATCAGCCTCTTGATCTTTGGAA 57.419 40.909 0.00 0.00 32.42 3.53
4631 5162 4.263639 ACAATCAGCCTCTTGATCTTTGGA 60.264 41.667 0.00 0.00 36.81 3.53
4632 5163 4.015084 ACAATCAGCCTCTTGATCTTTGG 58.985 43.478 0.00 0.00 36.81 3.28
4633 5164 5.399858 CAACAATCAGCCTCTTGATCTTTG 58.600 41.667 0.00 0.00 36.81 2.77
4634 5165 4.461781 CCAACAATCAGCCTCTTGATCTTT 59.538 41.667 0.00 0.00 36.81 2.52
4635 5166 4.015084 CCAACAATCAGCCTCTTGATCTT 58.985 43.478 0.00 0.00 36.81 2.40
4636 5167 3.618351 CCAACAATCAGCCTCTTGATCT 58.382 45.455 0.00 0.00 36.81 2.75
4637 5168 2.098770 GCCAACAATCAGCCTCTTGATC 59.901 50.000 0.00 0.00 36.81 2.92
4638 5169 2.097825 GCCAACAATCAGCCTCTTGAT 58.902 47.619 0.00 0.00 39.42 2.57
4639 5170 1.202915 TGCCAACAATCAGCCTCTTGA 60.203 47.619 0.00 0.00 0.00 3.02
4640 5171 1.250328 TGCCAACAATCAGCCTCTTG 58.750 50.000 0.00 0.00 0.00 3.02
4641 5172 1.891150 CTTGCCAACAATCAGCCTCTT 59.109 47.619 0.00 0.00 34.61 2.85
4642 5173 1.202976 ACTTGCCAACAATCAGCCTCT 60.203 47.619 0.00 0.00 34.61 3.69
4643 5174 1.068055 CACTTGCCAACAATCAGCCTC 60.068 52.381 0.00 0.00 34.61 4.70
4644 5175 0.963962 CACTTGCCAACAATCAGCCT 59.036 50.000 0.00 0.00 34.61 4.58
4645 5176 0.668401 GCACTTGCCAACAATCAGCC 60.668 55.000 0.00 0.00 34.61 4.85
4646 5177 0.032403 TGCACTTGCCAACAATCAGC 59.968 50.000 0.00 0.00 41.18 4.26
4647 5178 2.512485 TTGCACTTGCCAACAATCAG 57.488 45.000 0.00 0.00 41.18 2.90
4648 5179 2.429971 TCTTTGCACTTGCCAACAATCA 59.570 40.909 0.00 0.00 41.18 2.57
4649 5180 3.096489 TCTTTGCACTTGCCAACAATC 57.904 42.857 0.00 0.00 41.18 2.67
4650 5181 3.540314 TTCTTTGCACTTGCCAACAAT 57.460 38.095 0.00 0.00 41.18 2.71
4651 5182 3.540314 ATTCTTTGCACTTGCCAACAA 57.460 38.095 0.00 0.00 41.18 2.83
4652 5183 3.196463 CAATTCTTTGCACTTGCCAACA 58.804 40.909 0.00 0.00 41.18 3.33
4653 5184 2.545106 CCAATTCTTTGCACTTGCCAAC 59.455 45.455 0.00 0.00 41.18 3.77
4654 5185 2.433604 TCCAATTCTTTGCACTTGCCAA 59.566 40.909 0.00 0.00 41.18 4.52
4655 5186 2.037901 TCCAATTCTTTGCACTTGCCA 58.962 42.857 0.00 0.00 41.18 4.92
4656 5187 2.818130 TCCAATTCTTTGCACTTGCC 57.182 45.000 0.00 0.00 41.18 4.52
4657 5188 4.176271 GGTATCCAATTCTTTGCACTTGC 58.824 43.478 0.00 0.00 42.50 4.01
4658 5189 5.389859 TGGTATCCAATTCTTTGCACTTG 57.610 39.130 0.00 0.00 0.00 3.16
4679 5210 4.640364 ACCAATTGTTAGCCAACCAATTG 58.360 39.130 17.38 17.38 39.56 2.32
4680 5211 4.972751 ACCAATTGTTAGCCAACCAATT 57.027 36.364 4.43 0.00 35.44 2.32
4681 5212 4.972751 AACCAATTGTTAGCCAACCAAT 57.027 36.364 4.43 0.00 35.44 3.16
4682 5213 4.762289 AAACCAATTGTTAGCCAACCAA 57.238 36.364 4.43 0.00 35.67 3.67
4683 5214 4.762289 AAAACCAATTGTTAGCCAACCA 57.238 36.364 4.43 0.00 35.67 3.67
4684 5215 4.260990 GCAAAAACCAATTGTTAGCCAACC 60.261 41.667 4.43 0.00 35.67 3.77
4685 5216 4.260990 GGCAAAAACCAATTGTTAGCCAAC 60.261 41.667 14.91 0.00 43.50 3.77
4686 5217 3.879892 GGCAAAAACCAATTGTTAGCCAA 59.120 39.130 14.91 0.00 43.50 4.52
4687 5218 3.471680 GGCAAAAACCAATTGTTAGCCA 58.528 40.909 14.91 0.00 43.50 4.75
4688 5219 3.471680 TGGCAAAAACCAATTGTTAGCC 58.528 40.909 4.43 10.49 43.93 3.93
4698 5229 4.494091 TTTTGGAGATTGGCAAAAACCA 57.506 36.364 3.01 11.01 38.16 3.67
4739 5270 2.577225 CACGCTCGTGCATATTCGA 58.423 52.632 9.55 3.07 39.39 3.71
4749 5280 9.797556 TCTTTAATATATAATATGCACGCTCGT 57.202 29.630 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.