Multiple sequence alignment - TraesCS1D01G272300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G272300 chr1D 100.000 6097 0 0 1 6097 366233650 366239746 0.000000e+00 11260.0
1 TraesCS1D01G272300 chr1B 93.600 4953 195 43 636 5547 491254817 491249946 0.000000e+00 7278.0
2 TraesCS1D01G272300 chr1A 94.927 3371 128 25 2089 5448 465510576 465507238 0.000000e+00 5238.0
3 TraesCS1D01G272300 chr1A 92.596 1040 51 13 685 1705 465512192 465511160 0.000000e+00 1471.0
4 TraesCS1D01G272300 chr1A 98.413 315 5 0 1738 2052 465511035 465510721 6.900000e-154 555.0
5 TraesCS1D01G272300 chr1A 98.039 51 1 0 2054 2104 465510636 465510586 8.420000e-14 89.8
6 TraesCS1D01G272300 chr1A 97.778 45 1 0 4115 4159 574227540 574227496 1.820000e-10 78.7
7 TraesCS1D01G272300 chr2B 93.956 546 30 2 5547 6090 579986674 579986130 0.000000e+00 822.0
8 TraesCS1D01G272300 chr2B 79.137 139 10 7 4115 4234 734062862 734062724 1.820000e-10 78.7
9 TraesCS1D01G272300 chr3A 92.831 544 39 0 5547 6090 688909904 688909361 0.000000e+00 789.0
10 TraesCS1D01G272300 chr3A 91.358 81 7 0 3584 3664 726701229 726701309 1.800000e-20 111.0
11 TraesCS1D01G272300 chr4B 91.376 545 46 1 5547 6091 461164825 461165368 0.000000e+00 745.0
12 TraesCS1D01G272300 chr4B 89.890 544 55 0 5547 6090 245672194 245671651 0.000000e+00 701.0
13 TraesCS1D01G272300 chr4B 79.592 147 11 6 4107 4234 629899506 629899652 3.030000e-13 87.9
14 TraesCS1D01G272300 chr7B 91.176 544 48 0 5547 6090 81434279 81433736 0.000000e+00 739.0
15 TraesCS1D01G272300 chr3D 90.494 547 52 0 5547 6093 434892532 434891986 0.000000e+00 723.0
16 TraesCS1D01G272300 chr6B 89.299 542 57 1 5547 6088 583185005 583185545 0.000000e+00 678.0
17 TraesCS1D01G272300 chr6B 89.130 46 5 0 261 306 335990231 335990276 2.370000e-04 58.4
18 TraesCS1D01G272300 chr6A 88.971 544 60 0 5547 6090 404692714 404693257 0.000000e+00 673.0
19 TraesCS1D01G272300 chr6A 91.358 81 7 0 3584 3664 594248948 594249028 1.800000e-20 111.0
20 TraesCS1D01G272300 chr5D 86.813 546 65 5 5547 6090 167049847 167049307 2.430000e-168 603.0
21 TraesCS1D01G272300 chr5D 90.698 86 7 1 3579 3664 548197520 548197604 4.990000e-21 113.0
22 TraesCS1D01G272300 chr5D 88.462 52 6 0 261 312 123665126 123665177 5.100000e-06 63.9
23 TraesCS1D01G272300 chr7A 89.286 84 9 0 3584 3667 226610028 226609945 8.360000e-19 106.0
24 TraesCS1D01G272300 chr4D 89.286 84 9 0 3584 3667 253592986 253592903 8.360000e-19 106.0
25 TraesCS1D01G272300 chr5A 98.113 53 1 0 261 313 74453976 74453924 6.510000e-15 93.5
26 TraesCS1D01G272300 chr3B 79.592 147 11 7 4107 4234 786348117 786347971 3.030000e-13 87.9
27 TraesCS1D01G272300 chr5B 79.137 139 10 7 4115 4234 63383047 63382909 1.820000e-10 78.7
28 TraesCS1D01G272300 chr5B 90.385 52 5 0 261 312 253625714 253625765 1.100000e-07 69.4
29 TraesCS1D01G272300 chr2A 79.137 139 10 7 4115 4234 1137752 1137890 1.820000e-10 78.7
30 TraesCS1D01G272300 chr2A 79.137 139 10 7 4115 4234 653474825 653474963 1.820000e-10 78.7
31 TraesCS1D01G272300 chr2A 97.222 36 1 0 277 312 691098847 691098882 1.830000e-05 62.1
32 TraesCS1D01G272300 chr2A 86.792 53 7 0 261 313 584394161 584394109 6.600000e-05 60.2
33 TraesCS1D01G272300 chr2A 86.538 52 7 0 261 312 725032663 725032612 2.370000e-04 58.4
34 TraesCS1D01G272300 chr6D 89.130 46 5 0 261 306 358778443 358778488 2.370000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G272300 chr1D 366233650 366239746 6096 False 11260.00 11260 100.00000 1 6097 1 chr1D.!!$F1 6096
1 TraesCS1D01G272300 chr1B 491249946 491254817 4871 True 7278.00 7278 93.60000 636 5547 1 chr1B.!!$R1 4911
2 TraesCS1D01G272300 chr1A 465507238 465512192 4954 True 1838.45 5238 95.99375 685 5448 4 chr1A.!!$R2 4763
3 TraesCS1D01G272300 chr2B 579986130 579986674 544 True 822.00 822 93.95600 5547 6090 1 chr2B.!!$R1 543
4 TraesCS1D01G272300 chr3A 688909361 688909904 543 True 789.00 789 92.83100 5547 6090 1 chr3A.!!$R1 543
5 TraesCS1D01G272300 chr4B 461164825 461165368 543 False 745.00 745 91.37600 5547 6091 1 chr4B.!!$F1 544
6 TraesCS1D01G272300 chr4B 245671651 245672194 543 True 701.00 701 89.89000 5547 6090 1 chr4B.!!$R1 543
7 TraesCS1D01G272300 chr7B 81433736 81434279 543 True 739.00 739 91.17600 5547 6090 1 chr7B.!!$R1 543
8 TraesCS1D01G272300 chr3D 434891986 434892532 546 True 723.00 723 90.49400 5547 6093 1 chr3D.!!$R1 546
9 TraesCS1D01G272300 chr6B 583185005 583185545 540 False 678.00 678 89.29900 5547 6088 1 chr6B.!!$F2 541
10 TraesCS1D01G272300 chr6A 404692714 404693257 543 False 673.00 673 88.97100 5547 6090 1 chr6A.!!$F1 543
11 TraesCS1D01G272300 chr5D 167049307 167049847 540 True 603.00 603 86.81300 5547 6090 1 chr5D.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.032952 TTAAGACACCGAAGCAGCGT 59.967 50.000 0.00 0.00 0.00 5.07 F
636 637 0.044855 AGACCCAGGAGTAATGGCCT 59.955 55.000 3.32 0.00 36.43 5.19 F
725 726 0.179134 CGGAGCCGTTTCGATCTCTT 60.179 55.000 0.00 0.00 34.35 2.85 F
1082 1096 1.078143 GAGGCGGAAATCCTGCACT 60.078 57.895 14.87 10.61 37.31 4.40 F
2664 2902 2.547990 ACCCAACCGAATCCTTCTAGT 58.452 47.619 0.00 0.00 0.00 2.57 F
2849 3087 0.804989 GATTCACTCCCCAGTTTGCG 59.195 55.000 0.00 0.00 0.00 4.85 F
4370 4617 1.140252 GTGGTGGACGCCAACCTATAT 59.860 52.381 6.11 0.00 41.25 0.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 1425 0.326522 TGCATCTGGAGAAGGGCCTA 60.327 55.000 6.41 0.0 0.00 3.93 R
1508 1531 0.677731 TGGGCTCTTGGCATCGAAAG 60.678 55.000 0.00 0.0 44.01 2.62 R
2693 2931 1.194218 TGATGCAGAATCTCCACCGA 58.806 50.000 0.00 0.0 36.15 4.69 R
2822 3060 1.918262 TGGGGAGTGAATCAGAGCATT 59.082 47.619 0.00 0.0 0.00 3.56 R
4314 4560 4.637483 AGATTAATGGCCACATTTGTCG 57.363 40.909 8.16 0.0 44.69 4.35 R
4680 4928 0.109319 CGAAAAATGGGAAGGTGGCG 60.109 55.000 0.00 0.0 0.00 5.69 R
5634 5896 0.837272 CACCCATCATCCCCGTTAGT 59.163 55.000 0.00 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.348620 TCACTTGCTGAGCCGCAT 59.651 55.556 0.23 0.00 40.04 4.73
18 19 1.742880 TCACTTGCTGAGCCGCATC 60.743 57.895 0.23 0.00 40.04 3.91
19 20 2.036571 CACTTGCTGAGCCGCATCA 61.037 57.895 0.23 0.00 40.04 3.07
20 21 1.302752 ACTTGCTGAGCCGCATCAA 60.303 52.632 0.23 0.00 40.04 2.57
21 22 0.890542 ACTTGCTGAGCCGCATCAAA 60.891 50.000 0.23 0.00 40.04 2.69
22 23 0.455633 CTTGCTGAGCCGCATCAAAC 60.456 55.000 0.23 0.00 40.04 2.93
23 24 1.171549 TTGCTGAGCCGCATCAAACA 61.172 50.000 0.23 0.00 40.04 2.83
24 25 1.154150 GCTGAGCCGCATCAAACAC 60.154 57.895 0.00 0.00 0.00 3.32
25 26 1.133253 CTGAGCCGCATCAAACACG 59.867 57.895 0.00 0.00 0.00 4.49
29 30 3.966215 CCGCATCAAACACGGTCT 58.034 55.556 0.00 0.00 42.01 3.85
30 31 3.131326 CCGCATCAAACACGGTCTA 57.869 52.632 0.00 0.00 42.01 2.59
31 32 1.651987 CCGCATCAAACACGGTCTAT 58.348 50.000 0.00 0.00 42.01 1.98
32 33 2.006888 CCGCATCAAACACGGTCTATT 58.993 47.619 0.00 0.00 42.01 1.73
33 34 2.223021 CCGCATCAAACACGGTCTATTG 60.223 50.000 0.00 0.00 42.01 1.90
34 35 2.670905 CGCATCAAACACGGTCTATTGA 59.329 45.455 3.23 3.23 36.35 2.57
35 36 3.309682 CGCATCAAACACGGTCTATTGAT 59.690 43.478 6.70 6.70 41.78 2.57
38 39 4.545208 TCAAACACGGTCTATTGATGGA 57.455 40.909 0.00 0.00 0.00 3.41
39 40 4.503910 TCAAACACGGTCTATTGATGGAG 58.496 43.478 0.00 0.00 0.00 3.86
40 41 4.020573 TCAAACACGGTCTATTGATGGAGT 60.021 41.667 0.00 0.00 0.00 3.85
41 42 3.526931 ACACGGTCTATTGATGGAGTG 57.473 47.619 0.00 0.00 34.85 3.51
42 43 3.096852 ACACGGTCTATTGATGGAGTGA 58.903 45.455 9.64 0.00 33.18 3.41
43 44 3.513912 ACACGGTCTATTGATGGAGTGAA 59.486 43.478 9.64 0.00 33.18 3.18
44 45 4.162320 ACACGGTCTATTGATGGAGTGAAT 59.838 41.667 9.64 0.00 33.18 2.57
45 46 4.509230 CACGGTCTATTGATGGAGTGAATG 59.491 45.833 0.00 0.00 0.00 2.67
46 47 4.162320 ACGGTCTATTGATGGAGTGAATGT 59.838 41.667 0.00 0.00 0.00 2.71
47 48 4.747108 CGGTCTATTGATGGAGTGAATGTC 59.253 45.833 0.00 0.00 0.00 3.06
48 49 5.059833 GGTCTATTGATGGAGTGAATGTCC 58.940 45.833 0.00 0.00 34.31 4.02
55 56 3.260475 TGGAGTGAATGTCCAATACGG 57.740 47.619 0.00 0.00 41.32 4.02
56 57 1.940613 GGAGTGAATGTCCAATACGGC 59.059 52.381 0.00 0.00 33.84 5.68
57 58 1.940613 GAGTGAATGTCCAATACGGCC 59.059 52.381 0.00 0.00 33.14 6.13
58 59 1.280710 AGTGAATGTCCAATACGGCCA 59.719 47.619 2.24 0.00 33.14 5.36
59 60 1.400494 GTGAATGTCCAATACGGCCAC 59.600 52.381 2.24 0.00 33.14 5.01
60 61 1.280710 TGAATGTCCAATACGGCCACT 59.719 47.619 2.24 0.00 33.14 4.00
61 62 2.502130 TGAATGTCCAATACGGCCACTA 59.498 45.455 2.24 0.00 33.14 2.74
62 63 2.910688 ATGTCCAATACGGCCACTAG 57.089 50.000 2.24 0.00 33.14 2.57
63 64 0.177141 TGTCCAATACGGCCACTAGC 59.823 55.000 2.24 0.00 42.60 3.42
81 82 3.154589 CCTTAGAAAGGCCGTCACC 57.845 57.895 11.53 0.00 42.78 4.02
82 83 0.323629 CCTTAGAAAGGCCGTCACCA 59.676 55.000 11.53 0.00 42.78 4.17
83 84 1.439679 CTTAGAAAGGCCGTCACCAC 58.560 55.000 11.53 0.00 0.00 4.16
84 85 0.035739 TTAGAAAGGCCGTCACCACC 59.964 55.000 11.53 0.00 0.00 4.61
85 86 0.834687 TAGAAAGGCCGTCACCACCT 60.835 55.000 11.53 0.00 34.45 4.00
86 87 1.228154 GAAAGGCCGTCACCACCTT 60.228 57.895 0.00 0.00 45.73 3.50
87 88 1.515521 GAAAGGCCGTCACCACCTTG 61.516 60.000 0.00 0.00 42.99 3.61
88 89 1.990160 AAAGGCCGTCACCACCTTGA 61.990 55.000 0.00 0.00 42.99 3.02
89 90 2.358737 GGCCGTCACCACCTTGAG 60.359 66.667 0.00 0.00 0.00 3.02
90 91 2.741092 GCCGTCACCACCTTGAGA 59.259 61.111 0.00 0.00 0.00 3.27
91 92 1.296715 GCCGTCACCACCTTGAGAT 59.703 57.895 0.00 0.00 0.00 2.75
92 93 0.535335 GCCGTCACCACCTTGAGATA 59.465 55.000 0.00 0.00 0.00 1.98
93 94 1.139058 GCCGTCACCACCTTGAGATAT 59.861 52.381 0.00 0.00 0.00 1.63
94 95 2.364324 GCCGTCACCACCTTGAGATATA 59.636 50.000 0.00 0.00 0.00 0.86
95 96 3.553096 GCCGTCACCACCTTGAGATATAG 60.553 52.174 0.00 0.00 0.00 1.31
96 97 3.889538 CCGTCACCACCTTGAGATATAGA 59.110 47.826 0.00 0.00 0.00 1.98
97 98 4.022762 CCGTCACCACCTTGAGATATAGAG 60.023 50.000 0.00 0.00 0.00 2.43
98 99 4.580995 CGTCACCACCTTGAGATATAGAGT 59.419 45.833 0.00 0.00 0.00 3.24
99 100 5.067936 CGTCACCACCTTGAGATATAGAGTT 59.932 44.000 0.00 0.00 0.00 3.01
100 101 6.276847 GTCACCACCTTGAGATATAGAGTTG 58.723 44.000 0.00 0.00 0.00 3.16
101 102 5.053145 CACCACCTTGAGATATAGAGTTGC 58.947 45.833 0.00 0.00 0.00 4.17
102 103 4.101741 ACCACCTTGAGATATAGAGTTGCC 59.898 45.833 0.00 0.00 0.00 4.52
103 104 4.101585 CCACCTTGAGATATAGAGTTGCCA 59.898 45.833 0.00 0.00 0.00 4.92
104 105 5.221803 CCACCTTGAGATATAGAGTTGCCAT 60.222 44.000 0.00 0.00 0.00 4.40
105 106 6.014242 CCACCTTGAGATATAGAGTTGCCATA 60.014 42.308 0.00 0.00 0.00 2.74
106 107 6.870965 CACCTTGAGATATAGAGTTGCCATAC 59.129 42.308 0.00 0.00 0.00 2.39
107 108 6.784969 ACCTTGAGATATAGAGTTGCCATACT 59.215 38.462 0.00 0.00 0.00 2.12
108 109 7.039363 ACCTTGAGATATAGAGTTGCCATACTC 60.039 40.741 0.00 0.00 43.90 2.59
118 119 6.702716 GAGTTGCCATACTCTCTAACTAGT 57.297 41.667 0.00 0.00 41.07 2.57
119 120 6.458232 AGTTGCCATACTCTCTAACTAGTG 57.542 41.667 0.00 0.00 0.00 2.74
120 121 5.952947 AGTTGCCATACTCTCTAACTAGTGT 59.047 40.000 0.00 0.00 0.00 3.55
121 122 6.437793 AGTTGCCATACTCTCTAACTAGTGTT 59.562 38.462 0.00 0.00 39.98 3.32
122 123 6.208988 TGCCATACTCTCTAACTAGTGTTG 57.791 41.667 0.00 0.00 37.59 3.33
123 124 5.715279 TGCCATACTCTCTAACTAGTGTTGT 59.285 40.000 0.00 0.00 37.59 3.32
124 125 6.037098 GCCATACTCTCTAACTAGTGTTGTG 58.963 44.000 0.00 0.00 37.59 3.33
125 126 6.350277 GCCATACTCTCTAACTAGTGTTGTGT 60.350 42.308 0.00 0.00 37.59 3.72
126 127 7.251994 CCATACTCTCTAACTAGTGTTGTGTC 58.748 42.308 0.00 0.00 37.59 3.67
127 128 7.094334 CCATACTCTCTAACTAGTGTTGTGTCA 60.094 40.741 0.00 0.00 37.59 3.58
128 129 6.902771 ACTCTCTAACTAGTGTTGTGTCAT 57.097 37.500 0.00 0.00 37.59 3.06
129 130 6.915349 ACTCTCTAACTAGTGTTGTGTCATC 58.085 40.000 0.00 0.00 37.59 2.92
130 131 6.717540 ACTCTCTAACTAGTGTTGTGTCATCT 59.282 38.462 0.00 0.00 37.59 2.90
131 132 7.883833 ACTCTCTAACTAGTGTTGTGTCATCTA 59.116 37.037 0.00 0.00 37.59 1.98
132 133 8.631480 TCTCTAACTAGTGTTGTGTCATCTAA 57.369 34.615 0.00 0.00 37.59 2.10
133 134 9.074576 TCTCTAACTAGTGTTGTGTCATCTAAA 57.925 33.333 0.00 0.00 37.59 1.85
134 135 9.692749 CTCTAACTAGTGTTGTGTCATCTAAAA 57.307 33.333 0.00 0.00 37.59 1.52
185 186 8.542497 TTAACACACTACAAACACAGATATCC 57.458 34.615 0.00 0.00 0.00 2.59
186 187 6.109156 ACACACTACAAACACAGATATCCA 57.891 37.500 0.00 0.00 0.00 3.41
187 188 6.711277 ACACACTACAAACACAGATATCCAT 58.289 36.000 0.00 0.00 0.00 3.41
188 189 7.847096 ACACACTACAAACACAGATATCCATA 58.153 34.615 0.00 0.00 0.00 2.74
189 190 8.318412 ACACACTACAAACACAGATATCCATAA 58.682 33.333 0.00 0.00 0.00 1.90
190 191 9.161629 CACACTACAAACACAGATATCCATAAA 57.838 33.333 0.00 0.00 0.00 1.40
191 192 9.162764 ACACTACAAACACAGATATCCATAAAC 57.837 33.333 0.00 0.00 0.00 2.01
192 193 8.328146 CACTACAAACACAGATATCCATAAACG 58.672 37.037 0.00 0.00 0.00 3.60
193 194 6.119144 ACAAACACAGATATCCATAAACGC 57.881 37.500 0.00 0.00 0.00 4.84
194 195 5.645929 ACAAACACAGATATCCATAAACGCA 59.354 36.000 0.00 0.00 0.00 5.24
195 196 6.318648 ACAAACACAGATATCCATAAACGCAT 59.681 34.615 0.00 0.00 0.00 4.73
196 197 6.942532 AACACAGATATCCATAAACGCATT 57.057 33.333 0.00 0.00 0.00 3.56
197 198 6.545504 ACACAGATATCCATAAACGCATTC 57.454 37.500 0.00 0.00 0.00 2.67
198 199 5.177511 ACACAGATATCCATAAACGCATTCG 59.822 40.000 0.00 0.00 42.43 3.34
229 230 4.879295 ACAATAATGTCTCCCCATTGGA 57.121 40.909 3.62 0.00 36.31 3.53
230 231 4.536765 ACAATAATGTCTCCCCATTGGAC 58.463 43.478 3.62 0.00 34.24 4.02
231 232 3.492102 ATAATGTCTCCCCATTGGACG 57.508 47.619 3.62 0.00 38.61 4.79
232 233 1.285280 AATGTCTCCCCATTGGACGA 58.715 50.000 3.62 0.00 38.61 4.20
233 234 1.285280 ATGTCTCCCCATTGGACGAA 58.715 50.000 3.62 0.00 38.61 3.85
234 235 0.323629 TGTCTCCCCATTGGACGAAC 59.676 55.000 3.62 0.00 38.61 3.95
235 236 0.323629 GTCTCCCCATTGGACGAACA 59.676 55.000 3.62 0.00 38.61 3.18
236 237 1.065418 GTCTCCCCATTGGACGAACAT 60.065 52.381 3.62 0.00 38.61 2.71
237 238 1.633432 TCTCCCCATTGGACGAACATT 59.367 47.619 3.62 0.00 38.61 2.71
238 239 1.745087 CTCCCCATTGGACGAACATTG 59.255 52.381 3.62 0.00 38.61 2.82
239 240 0.173255 CCCCATTGGACGAACATTGC 59.827 55.000 3.62 0.00 35.39 3.56
240 241 0.173255 CCCATTGGACGAACATTGCC 59.827 55.000 3.62 0.00 0.00 4.52
241 242 0.179166 CCATTGGACGAACATTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
242 243 0.801872 CATTGGACGAACATTGCCGA 59.198 50.000 6.13 0.00 0.00 5.54
243 244 1.198867 CATTGGACGAACATTGCCGAA 59.801 47.619 6.13 0.00 0.00 4.30
244 245 1.309950 TTGGACGAACATTGCCGAAA 58.690 45.000 6.13 0.00 0.00 3.46
245 246 1.309950 TGGACGAACATTGCCGAAAA 58.690 45.000 6.13 0.00 0.00 2.29
246 247 1.265635 TGGACGAACATTGCCGAAAAG 59.734 47.619 6.13 0.00 0.00 2.27
247 248 1.327507 GACGAACATTGCCGAAAAGC 58.672 50.000 6.13 0.00 0.00 3.51
248 249 0.039527 ACGAACATTGCCGAAAAGCC 60.040 50.000 6.13 0.00 0.00 4.35
249 250 0.039617 CGAACATTGCCGAAAAGCCA 60.040 50.000 0.00 0.00 0.00 4.75
250 251 1.402720 CGAACATTGCCGAAAAGCCAT 60.403 47.619 0.00 0.00 0.00 4.40
251 252 2.159448 CGAACATTGCCGAAAAGCCATA 60.159 45.455 0.00 0.00 0.00 2.74
252 253 3.489059 CGAACATTGCCGAAAAGCCATAT 60.489 43.478 0.00 0.00 0.00 1.78
253 254 3.441496 ACATTGCCGAAAAGCCATATG 57.559 42.857 0.00 0.00 0.00 1.78
254 255 2.101249 ACATTGCCGAAAAGCCATATGG 59.899 45.455 18.07 18.07 38.53 2.74
255 256 1.110442 TTGCCGAAAAGCCATATGGG 58.890 50.000 23.30 5.75 40.85 4.00
269 270 3.586543 TGGGCATTCCACCTGTCA 58.413 55.556 0.00 0.00 41.46 3.58
270 271 2.086363 TGGGCATTCCACCTGTCAT 58.914 52.632 0.00 0.00 41.46 3.06
271 272 1.294041 TGGGCATTCCACCTGTCATA 58.706 50.000 0.00 0.00 41.46 2.15
272 273 1.064758 TGGGCATTCCACCTGTCATAC 60.065 52.381 0.00 0.00 41.46 2.39
273 274 1.299541 GGCATTCCACCTGTCATACG 58.700 55.000 0.00 0.00 0.00 3.06
274 275 0.657840 GCATTCCACCTGTCATACGC 59.342 55.000 0.00 0.00 0.00 4.42
275 276 1.299541 CATTCCACCTGTCATACGCC 58.700 55.000 0.00 0.00 0.00 5.68
276 277 0.180406 ATTCCACCTGTCATACGCCC 59.820 55.000 0.00 0.00 0.00 6.13
277 278 1.195442 TTCCACCTGTCATACGCCCA 61.195 55.000 0.00 0.00 0.00 5.36
278 279 1.195442 TCCACCTGTCATACGCCCAA 61.195 55.000 0.00 0.00 0.00 4.12
279 280 0.322098 CCACCTGTCATACGCCCAAA 60.322 55.000 0.00 0.00 0.00 3.28
280 281 1.086696 CACCTGTCATACGCCCAAAG 58.913 55.000 0.00 0.00 0.00 2.77
281 282 0.035439 ACCTGTCATACGCCCAAAGG 60.035 55.000 0.00 0.00 0.00 3.11
302 303 3.618171 GGTGCCTTAAGACACCGAA 57.382 52.632 23.02 0.00 46.32 4.30
303 304 1.439679 GGTGCCTTAAGACACCGAAG 58.560 55.000 23.02 0.00 46.32 3.79
304 305 0.796927 GTGCCTTAAGACACCGAAGC 59.203 55.000 10.57 0.25 0.00 3.86
305 306 0.394938 TGCCTTAAGACACCGAAGCA 59.605 50.000 3.36 0.00 0.00 3.91
306 307 1.079503 GCCTTAAGACACCGAAGCAG 58.920 55.000 3.36 0.00 0.00 4.24
307 308 1.079503 CCTTAAGACACCGAAGCAGC 58.920 55.000 3.36 0.00 0.00 5.25
308 309 0.716108 CTTAAGACACCGAAGCAGCG 59.284 55.000 0.00 0.00 0.00 5.18
309 310 0.032952 TTAAGACACCGAAGCAGCGT 59.967 50.000 0.00 0.00 0.00 5.07
310 311 0.388134 TAAGACACCGAAGCAGCGTC 60.388 55.000 0.00 0.00 0.00 5.19
311 312 3.112709 GACACCGAAGCAGCGTCC 61.113 66.667 2.43 0.00 0.00 4.79
318 319 4.722700 AAGCAGCGTCCGGGCATT 62.723 61.111 6.96 0.00 34.64 3.56
319 320 4.722700 AGCAGCGTCCGGGCATTT 62.723 61.111 6.96 0.00 34.64 2.32
320 321 4.481112 GCAGCGTCCGGGCATTTG 62.481 66.667 6.96 1.42 34.64 2.32
321 322 3.055719 CAGCGTCCGGGCATTTGT 61.056 61.111 6.96 0.00 34.64 2.83
322 323 1.743623 CAGCGTCCGGGCATTTGTA 60.744 57.895 6.96 0.00 34.64 2.41
323 324 1.449601 AGCGTCCGGGCATTTGTAG 60.450 57.895 6.96 0.00 34.64 2.74
324 325 1.743995 GCGTCCGGGCATTTGTAGT 60.744 57.895 6.96 0.00 0.00 2.73
325 326 1.702491 GCGTCCGGGCATTTGTAGTC 61.702 60.000 6.96 0.00 0.00 2.59
326 327 1.418342 CGTCCGGGCATTTGTAGTCG 61.418 60.000 6.96 0.00 0.00 4.18
327 328 0.108520 GTCCGGGCATTTGTAGTCGA 60.109 55.000 0.00 0.00 0.00 4.20
328 329 0.108520 TCCGGGCATTTGTAGTCGAC 60.109 55.000 7.70 7.70 0.00 4.20
329 330 1.418342 CCGGGCATTTGTAGTCGACG 61.418 60.000 10.46 0.00 0.00 5.12
330 331 1.418342 CGGGCATTTGTAGTCGACGG 61.418 60.000 10.46 0.00 0.00 4.79
331 332 0.390735 GGGCATTTGTAGTCGACGGT 60.391 55.000 10.46 0.00 0.00 4.83
332 333 1.135024 GGGCATTTGTAGTCGACGGTA 60.135 52.381 10.46 0.00 0.00 4.02
333 334 2.190981 GGCATTTGTAGTCGACGGTAG 58.809 52.381 10.46 0.00 0.00 3.18
334 335 2.190981 GCATTTGTAGTCGACGGTAGG 58.809 52.381 10.46 0.00 0.00 3.18
335 336 2.805845 CATTTGTAGTCGACGGTAGGG 58.194 52.381 10.46 0.00 0.00 3.53
336 337 2.198827 TTTGTAGTCGACGGTAGGGA 57.801 50.000 10.46 0.00 0.00 4.20
337 338 2.198827 TTGTAGTCGACGGTAGGGAA 57.801 50.000 10.46 0.00 0.00 3.97
338 339 2.198827 TGTAGTCGACGGTAGGGAAA 57.801 50.000 10.46 0.00 0.00 3.13
339 340 2.513753 TGTAGTCGACGGTAGGGAAAA 58.486 47.619 10.46 0.00 0.00 2.29
340 341 3.091545 TGTAGTCGACGGTAGGGAAAAT 58.908 45.455 10.46 0.00 0.00 1.82
341 342 2.667473 AGTCGACGGTAGGGAAAATG 57.333 50.000 10.46 0.00 0.00 2.32
342 343 1.004595 GTCGACGGTAGGGAAAATGC 58.995 55.000 0.00 0.00 0.00 3.56
343 344 0.458889 TCGACGGTAGGGAAAATGCG 60.459 55.000 0.00 0.00 0.00 4.73
344 345 0.458889 CGACGGTAGGGAAAATGCGA 60.459 55.000 0.00 0.00 0.00 5.10
345 346 1.287425 GACGGTAGGGAAAATGCGAG 58.713 55.000 0.00 0.00 0.00 5.03
346 347 0.743345 ACGGTAGGGAAAATGCGAGC 60.743 55.000 0.00 0.00 0.00 5.03
347 348 0.742990 CGGTAGGGAAAATGCGAGCA 60.743 55.000 0.00 0.00 0.00 4.26
348 349 1.680338 GGTAGGGAAAATGCGAGCAT 58.320 50.000 4.52 4.52 38.46 3.79
349 350 2.805295 CGGTAGGGAAAATGCGAGCATA 60.805 50.000 11.25 0.00 35.31 3.14
350 351 2.808543 GGTAGGGAAAATGCGAGCATAG 59.191 50.000 11.25 0.00 35.31 2.23
351 352 2.717639 AGGGAAAATGCGAGCATAGT 57.282 45.000 11.25 2.15 35.31 2.12
352 353 2.292267 AGGGAAAATGCGAGCATAGTG 58.708 47.619 11.25 0.00 35.31 2.74
353 354 1.334869 GGGAAAATGCGAGCATAGTGG 59.665 52.381 11.25 0.00 35.31 4.00
354 355 1.268743 GGAAAATGCGAGCATAGTGGC 60.269 52.381 11.25 0.29 35.31 5.01
355 356 1.401552 GAAAATGCGAGCATAGTGGCA 59.598 47.619 11.25 0.00 40.06 4.92
356 357 1.462616 AAATGCGAGCATAGTGGCAA 58.537 45.000 11.25 0.00 39.09 4.52
357 358 0.734889 AATGCGAGCATAGTGGCAAC 59.265 50.000 11.25 0.00 39.09 4.17
358 359 0.107508 ATGCGAGCATAGTGGCAACT 60.108 50.000 9.03 0.00 39.09 3.16
359 360 0.321564 TGCGAGCATAGTGGCAACTT 60.322 50.000 0.00 0.00 37.88 2.66
360 361 0.804989 GCGAGCATAGTGGCAACTTT 59.195 50.000 0.00 0.00 37.88 2.66
361 362 2.006888 GCGAGCATAGTGGCAACTTTA 58.993 47.619 0.00 0.00 37.88 1.85
362 363 2.030946 GCGAGCATAGTGGCAACTTTAG 59.969 50.000 0.00 0.00 37.88 1.85
363 364 3.521560 CGAGCATAGTGGCAACTTTAGA 58.478 45.455 0.00 0.00 37.88 2.10
364 365 3.932710 CGAGCATAGTGGCAACTTTAGAA 59.067 43.478 0.00 0.00 37.88 2.10
365 366 4.201724 CGAGCATAGTGGCAACTTTAGAAC 60.202 45.833 0.00 0.00 37.88 3.01
366 367 4.911390 AGCATAGTGGCAACTTTAGAACT 58.089 39.130 0.00 0.00 37.88 3.01
367 368 5.316987 AGCATAGTGGCAACTTTAGAACTT 58.683 37.500 0.00 0.00 37.88 2.66
368 369 6.472887 AGCATAGTGGCAACTTTAGAACTTA 58.527 36.000 0.00 0.00 37.88 2.24
369 370 6.940298 AGCATAGTGGCAACTTTAGAACTTAA 59.060 34.615 0.00 0.00 37.88 1.85
370 371 7.447238 AGCATAGTGGCAACTTTAGAACTTAAA 59.553 33.333 0.00 0.00 37.88 1.52
371 372 7.537649 GCATAGTGGCAACTTTAGAACTTAAAC 59.462 37.037 0.00 0.00 37.88 2.01
372 373 8.784043 CATAGTGGCAACTTTAGAACTTAAACT 58.216 33.333 0.00 0.00 37.88 2.66
373 374 7.260558 AGTGGCAACTTTAGAACTTAAACTC 57.739 36.000 0.00 0.00 30.14 3.01
374 375 7.054751 AGTGGCAACTTTAGAACTTAAACTCT 58.945 34.615 0.00 0.00 30.14 3.24
375 376 8.208903 AGTGGCAACTTTAGAACTTAAACTCTA 58.791 33.333 0.00 0.00 30.14 2.43
376 377 9.000486 GTGGCAACTTTAGAACTTAAACTCTAT 58.000 33.333 0.00 0.00 37.61 1.98
382 383 9.833917 ACTTTAGAACTTAAACTCTATATGGGC 57.166 33.333 0.00 0.00 0.00 5.36
384 385 9.832445 TTTAGAACTTAAACTCTATATGGGCTG 57.168 33.333 0.00 0.00 0.00 4.85
385 386 6.831976 AGAACTTAAACTCTATATGGGCTGG 58.168 40.000 0.00 0.00 0.00 4.85
386 387 6.387220 AGAACTTAAACTCTATATGGGCTGGT 59.613 38.462 0.00 0.00 0.00 4.00
387 388 6.576778 ACTTAAACTCTATATGGGCTGGTT 57.423 37.500 0.00 0.00 0.00 3.67
388 389 6.970191 ACTTAAACTCTATATGGGCTGGTTT 58.030 36.000 0.00 0.00 0.00 3.27
389 390 6.828785 ACTTAAACTCTATATGGGCTGGTTTG 59.171 38.462 0.00 0.00 0.00 2.93
390 391 5.450818 AAACTCTATATGGGCTGGTTTGA 57.549 39.130 0.00 0.00 0.00 2.69
391 392 5.653255 AACTCTATATGGGCTGGTTTGAT 57.347 39.130 0.00 0.00 0.00 2.57
392 393 5.234466 ACTCTATATGGGCTGGTTTGATC 57.766 43.478 0.00 0.00 0.00 2.92
393 394 4.660303 ACTCTATATGGGCTGGTTTGATCA 59.340 41.667 0.00 0.00 0.00 2.92
394 395 5.311649 ACTCTATATGGGCTGGTTTGATCAT 59.688 40.000 0.00 0.00 0.00 2.45
395 396 5.563592 TCTATATGGGCTGGTTTGATCATG 58.436 41.667 0.00 0.00 0.00 3.07
396 397 2.537633 ATGGGCTGGTTTGATCATGT 57.462 45.000 0.00 0.00 0.00 3.21
397 398 2.307496 TGGGCTGGTTTGATCATGTT 57.693 45.000 0.00 0.00 0.00 2.71
398 399 1.894466 TGGGCTGGTTTGATCATGTTG 59.106 47.619 0.00 0.00 0.00 3.33
399 400 1.205417 GGGCTGGTTTGATCATGTTGG 59.795 52.381 0.00 0.00 0.00 3.77
400 401 1.895131 GGCTGGTTTGATCATGTTGGT 59.105 47.619 0.00 0.00 0.00 3.67
401 402 2.094545 GGCTGGTTTGATCATGTTGGTC 60.095 50.000 0.00 0.00 0.00 4.02
402 403 2.414559 GCTGGTTTGATCATGTTGGTCG 60.415 50.000 0.00 0.00 27.66 4.79
403 404 3.073678 CTGGTTTGATCATGTTGGTCGA 58.926 45.455 0.00 0.00 27.66 4.20
404 405 3.481453 TGGTTTGATCATGTTGGTCGAA 58.519 40.909 0.00 0.00 28.76 3.71
405 406 3.885901 TGGTTTGATCATGTTGGTCGAAA 59.114 39.130 0.00 0.00 33.01 3.46
406 407 4.339530 TGGTTTGATCATGTTGGTCGAAAA 59.660 37.500 0.00 0.00 33.01 2.29
407 408 5.010516 TGGTTTGATCATGTTGGTCGAAAAT 59.989 36.000 0.00 0.00 33.01 1.82
408 409 5.925969 GGTTTGATCATGTTGGTCGAAAATT 59.074 36.000 0.00 0.00 33.01 1.82
409 410 6.128849 GGTTTGATCATGTTGGTCGAAAATTG 60.129 38.462 0.00 0.00 33.01 2.32
410 411 5.956068 TGATCATGTTGGTCGAAAATTGA 57.044 34.783 0.00 0.00 27.66 2.57
411 412 5.698832 TGATCATGTTGGTCGAAAATTGAC 58.301 37.500 0.00 0.00 27.66 3.18
412 413 5.240403 TGATCATGTTGGTCGAAAATTGACA 59.760 36.000 0.00 0.00 38.10 3.58
413 414 5.506686 TCATGTTGGTCGAAAATTGACAA 57.493 34.783 0.00 0.00 38.10 3.18
414 415 5.277825 TCATGTTGGTCGAAAATTGACAAC 58.722 37.500 0.00 0.00 38.10 3.32
415 416 4.974368 TGTTGGTCGAAAATTGACAACT 57.026 36.364 0.00 0.00 38.10 3.16
416 417 5.317733 TGTTGGTCGAAAATTGACAACTT 57.682 34.783 0.00 0.00 38.10 2.66
417 418 5.098893 TGTTGGTCGAAAATTGACAACTTG 58.901 37.500 0.00 0.00 38.10 3.16
418 419 4.974368 TGGTCGAAAATTGACAACTTGT 57.026 36.364 0.00 0.00 38.10 3.16
419 420 4.667262 TGGTCGAAAATTGACAACTTGTG 58.333 39.130 0.00 0.00 38.10 3.33
420 421 4.156922 TGGTCGAAAATTGACAACTTGTGT 59.843 37.500 0.00 0.00 45.74 3.72
421 422 5.354513 TGGTCGAAAATTGACAACTTGTGTA 59.645 36.000 0.00 0.00 41.96 2.90
422 423 6.127980 TGGTCGAAAATTGACAACTTGTGTAA 60.128 34.615 0.00 0.00 41.96 2.41
423 424 6.915843 GGTCGAAAATTGACAACTTGTGTAAT 59.084 34.615 0.00 0.00 41.96 1.89
424 425 8.071368 GGTCGAAAATTGACAACTTGTGTAATA 58.929 33.333 0.00 0.00 41.96 0.98
425 426 8.889000 GTCGAAAATTGACAACTTGTGTAATAC 58.111 33.333 0.00 0.00 41.96 1.89
426 427 8.832521 TCGAAAATTGACAACTTGTGTAATACT 58.167 29.630 0.00 0.00 41.96 2.12
427 428 9.103048 CGAAAATTGACAACTTGTGTAATACTC 57.897 33.333 0.00 1.21 41.96 2.59
428 429 9.394477 GAAAATTGACAACTTGTGTAATACTCC 57.606 33.333 0.00 0.00 41.96 3.85
429 430 7.448748 AATTGACAACTTGTGTAATACTCCC 57.551 36.000 0.00 0.00 41.96 4.30
430 431 5.818678 TGACAACTTGTGTAATACTCCCT 57.181 39.130 0.00 0.00 41.96 4.20
431 432 5.790593 TGACAACTTGTGTAATACTCCCTC 58.209 41.667 0.00 0.00 41.96 4.30
432 433 5.161943 ACAACTTGTGTAATACTCCCTCC 57.838 43.478 0.00 0.00 39.29 4.30
433 434 4.181578 CAACTTGTGTAATACTCCCTCCG 58.818 47.826 0.00 0.00 0.00 4.63
434 435 3.438183 ACTTGTGTAATACTCCCTCCGT 58.562 45.455 0.00 0.00 0.00 4.69
435 436 3.446516 ACTTGTGTAATACTCCCTCCGTC 59.553 47.826 0.00 0.00 0.00 4.79
436 437 3.377253 TGTGTAATACTCCCTCCGTCT 57.623 47.619 0.00 0.00 0.00 4.18
437 438 3.285484 TGTGTAATACTCCCTCCGTCTC 58.715 50.000 0.00 0.00 0.00 3.36
438 439 3.285484 GTGTAATACTCCCTCCGTCTCA 58.715 50.000 0.00 0.00 0.00 3.27
439 440 3.698040 GTGTAATACTCCCTCCGTCTCAA 59.302 47.826 0.00 0.00 0.00 3.02
440 441 4.159135 GTGTAATACTCCCTCCGTCTCAAA 59.841 45.833 0.00 0.00 0.00 2.69
441 442 4.773674 TGTAATACTCCCTCCGTCTCAAAA 59.226 41.667 0.00 0.00 0.00 2.44
442 443 4.903045 AATACTCCCTCCGTCTCAAAAA 57.097 40.909 0.00 0.00 0.00 1.94
575 576 7.864307 AAGTTATACTTACGTGTCAAGACAC 57.136 36.000 20.46 20.46 45.77 3.67
576 577 7.655490 AAGTTATACTTACGTGTCAAGACACT 58.345 34.615 25.53 16.87 46.35 3.55
577 578 8.139989 AAGTTATACTTACGTGTCAAGACACTT 58.860 33.333 25.53 20.51 46.35 3.16
588 589 6.371809 TGTCAAGACACTTATTTTGTCACC 57.628 37.500 0.00 0.00 45.00 4.02
589 590 5.007234 TGTCAAGACACTTATTTTGTCACCG 59.993 40.000 0.00 0.00 45.00 4.94
590 591 4.024387 TCAAGACACTTATTTTGTCACCGC 60.024 41.667 5.36 0.00 45.00 5.68
591 592 3.472652 AGACACTTATTTTGTCACCGCA 58.527 40.909 5.36 0.00 45.00 5.69
592 593 3.880490 AGACACTTATTTTGTCACCGCAA 59.120 39.130 5.36 0.00 45.00 4.85
593 594 4.336993 AGACACTTATTTTGTCACCGCAAA 59.663 37.500 5.36 0.00 45.00 3.68
595 596 5.411781 ACACTTATTTTGTCACCGCAAAAA 58.588 33.333 7.84 0.00 46.91 1.94
625 626 6.840780 AAATCACTTATTTTGAGACCCAGG 57.159 37.500 0.00 0.00 33.91 4.45
626 627 5.779241 ATCACTTATTTTGAGACCCAGGA 57.221 39.130 0.00 0.00 0.00 3.86
627 628 5.165961 TCACTTATTTTGAGACCCAGGAG 57.834 43.478 0.00 0.00 0.00 3.69
628 629 4.597507 TCACTTATTTTGAGACCCAGGAGT 59.402 41.667 0.00 0.00 0.00 3.85
629 630 5.783360 TCACTTATTTTGAGACCCAGGAGTA 59.217 40.000 0.00 0.00 0.00 2.59
630 631 6.271391 TCACTTATTTTGAGACCCAGGAGTAA 59.729 38.462 0.00 0.00 0.00 2.24
631 632 7.037586 TCACTTATTTTGAGACCCAGGAGTAAT 60.038 37.037 0.00 0.00 0.00 1.89
632 633 7.066284 CACTTATTTTGAGACCCAGGAGTAATG 59.934 40.741 0.00 0.00 0.00 1.90
633 634 4.301072 TTTTGAGACCCAGGAGTAATGG 57.699 45.455 0.00 0.00 37.58 3.16
634 635 1.204146 TGAGACCCAGGAGTAATGGC 58.796 55.000 0.00 0.00 36.43 4.40
635 636 0.470341 GAGACCCAGGAGTAATGGCC 59.530 60.000 0.00 0.00 36.43 5.36
636 637 0.044855 AGACCCAGGAGTAATGGCCT 59.955 55.000 3.32 0.00 36.43 5.19
637 638 0.470341 GACCCAGGAGTAATGGCCTC 59.530 60.000 3.32 0.00 36.43 4.70
638 639 0.044855 ACCCAGGAGTAATGGCCTCT 59.955 55.000 3.32 0.00 36.43 3.69
639 640 1.294068 ACCCAGGAGTAATGGCCTCTA 59.706 52.381 3.32 0.00 36.43 2.43
640 641 2.089925 ACCCAGGAGTAATGGCCTCTAT 60.090 50.000 3.32 0.00 36.43 1.98
641 642 3.144125 ACCCAGGAGTAATGGCCTCTATA 59.856 47.826 3.32 0.00 36.43 1.31
671 672 4.988065 CGACCACCGTCACTCAAT 57.012 55.556 0.00 0.00 39.11 2.57
695 696 4.200283 GTCCGCTCGCCTCAGGAG 62.200 72.222 0.00 0.00 32.82 3.69
725 726 0.179134 CGGAGCCGTTTCGATCTCTT 60.179 55.000 0.00 0.00 34.35 2.85
786 787 1.690985 CTCCCCTCCCTCCACCTTC 60.691 68.421 0.00 0.00 0.00 3.46
787 788 2.184631 TCCCCTCCCTCCACCTTCT 61.185 63.158 0.00 0.00 0.00 2.85
788 789 1.229984 CCCCTCCCTCCACCTTCTT 60.230 63.158 0.00 0.00 0.00 2.52
798 812 1.275421 CCACCTTCTTCTCCCCTCCC 61.275 65.000 0.00 0.00 0.00 4.30
920 934 2.829458 CCCGTCGACCTCTCCTCC 60.829 72.222 10.58 0.00 0.00 4.30
1082 1096 1.078143 GAGGCGGAAATCCTGCACT 60.078 57.895 14.87 10.61 37.31 4.40
1180 1195 3.381590 GCGGCTTCCCTGAATAAAGATTT 59.618 43.478 0.00 0.00 0.00 2.17
1340 1355 2.954753 CTTCGCTGTTGTCCGGTGC 61.955 63.158 0.00 0.00 0.00 5.01
1374 1395 2.744202 CGTTAAGCAATCAAGCAGTCCT 59.256 45.455 0.00 0.00 36.85 3.85
1402 1425 2.663826 AAATTGTTGTGTTGCGGTGT 57.336 40.000 0.00 0.00 0.00 4.16
1434 1457 3.624410 TCCAGATGCAAGACATTCATTCG 59.376 43.478 0.00 0.00 39.84 3.34
1497 1520 2.695359 GTAAGGTGATGCGGTTCTTGA 58.305 47.619 0.00 0.00 0.00 3.02
1508 1531 2.604614 GCGGTTCTTGATTGTGTTGGTC 60.605 50.000 0.00 0.00 0.00 4.02
1582 1609 7.261325 TGCACTTAGTTTTTGCAATGTTTAGA 58.739 30.769 0.00 0.00 43.16 2.10
1584 1611 8.764287 GCACTTAGTTTTTGCAATGTTTAGATT 58.236 29.630 0.00 0.00 36.22 2.40
1595 1624 9.595823 TTGCAATGTTTAGATTCTACTAGTACC 57.404 33.333 0.00 0.00 0.00 3.34
1730 1842 8.570488 CCTTATTTTTACCTAAAAGACAACCGT 58.430 33.333 0.00 0.00 39.00 4.83
1736 1848 3.628942 ACCTAAAAGACAACCGTGTTTCC 59.371 43.478 0.00 0.00 37.62 3.13
1775 1896 7.405292 TGGTATGTTCTCATTCCTTTTCTCAT 58.595 34.615 5.70 0.00 40.59 2.90
1776 1897 7.890127 TGGTATGTTCTCATTCCTTTTCTCATT 59.110 33.333 5.70 0.00 40.59 2.57
2070 2274 7.518188 ACTAATATTTAGCTGTGGCAATACCT 58.482 34.615 0.00 0.00 41.70 3.08
2256 2485 4.034858 CGCTATCTAGTTCCGTCAGTTACA 59.965 45.833 0.00 0.00 0.00 2.41
2257 2486 5.448225 CGCTATCTAGTTCCGTCAGTTACAA 60.448 44.000 0.00 0.00 0.00 2.41
2305 2534 6.882678 GTGGGACTATATTTGTGTAAAGGTGT 59.117 38.462 0.00 0.00 0.00 4.16
2419 2657 8.450578 AGAAATTTGAATTACTGTGACAGTGA 57.549 30.769 27.18 20.19 45.01 3.41
2664 2902 2.547990 ACCCAACCGAATCCTTCTAGT 58.452 47.619 0.00 0.00 0.00 2.57
2668 2906 4.439968 CCAACCGAATCCTTCTAGTTACC 58.560 47.826 0.00 0.00 0.00 2.85
2693 2931 3.764434 CCACCACGTGCTCTATCCTATAT 59.236 47.826 10.91 0.00 31.34 0.86
2815 3053 6.013725 TCTCTCACACACCCATATGTAAACTT 60.014 38.462 1.24 0.00 0.00 2.66
2849 3087 0.804989 GATTCACTCCCCAGTTTGCG 59.195 55.000 0.00 0.00 0.00 4.85
2850 3088 1.244019 ATTCACTCCCCAGTTTGCGC 61.244 55.000 0.00 0.00 0.00 6.09
2851 3089 3.726517 CACTCCCCAGTTTGCGCG 61.727 66.667 0.00 0.00 0.00 6.86
3009 3247 3.688694 ACATTCTGTAGCAACGGGTTA 57.311 42.857 0.00 0.00 32.40 2.85
3010 3248 4.010667 ACATTCTGTAGCAACGGGTTAA 57.989 40.909 0.00 0.00 32.40 2.01
3058 3296 8.647796 ACTAATAATTGTAGCAGTATAGCACCA 58.352 33.333 0.00 0.00 36.85 4.17
3059 3297 9.489084 CTAATAATTGTAGCAGTATAGCACCAA 57.511 33.333 0.00 0.00 36.85 3.67
3060 3298 7.730364 ATAATTGTAGCAGTATAGCACCAAC 57.270 36.000 0.00 0.00 36.85 3.77
3110 3348 9.021807 TGTTACTATAGACTAGTGCTTTTGTCT 57.978 33.333 6.78 9.22 41.81 3.41
3220 3458 2.373169 GGCCCTCATCCAGTATCAATCA 59.627 50.000 0.00 0.00 0.00 2.57
3230 3468 4.644685 TCCAGTATCAATCACGTCATGAGA 59.355 41.667 0.00 0.00 41.91 3.27
3279 3517 7.685155 GCATGTAATTACTTCATGGCTCCATTT 60.685 37.037 16.33 0.00 39.20 2.32
3287 3525 1.475280 CATGGCTCCATTTGTGTCCTG 59.525 52.381 0.00 0.00 33.90 3.86
3546 3785 7.606456 GGTAAGGTCAATTTGTCAGTTCTCATA 59.394 37.037 0.00 0.00 0.00 2.15
3714 3953 1.271054 CCCAGGTTGAGTGGTTCTCTG 60.271 57.143 0.00 0.00 43.13 3.35
3985 4226 2.912771 TGGTGTTACTCCAGTGTTGTG 58.087 47.619 1.62 0.00 0.00 3.33
3994 4235 4.805219 ACTCCAGTGTTGTGTTTTTGTTC 58.195 39.130 0.00 0.00 0.00 3.18
4072 4318 1.372087 GATGGGAAGAGCTGCAACGG 61.372 60.000 1.02 0.00 0.00 4.44
4257 4503 3.451141 TGGAAAATGTGGTTGTTGAGC 57.549 42.857 0.00 0.00 0.00 4.26
4314 4560 6.051179 ACTGACCATTAAGGGAAGTCTTAC 57.949 41.667 14.22 0.00 43.89 2.34
4315 4561 5.080969 TGACCATTAAGGGAAGTCTTACG 57.919 43.478 14.22 0.00 43.89 3.18
4370 4617 1.140252 GTGGTGGACGCCAACCTATAT 59.860 52.381 6.11 0.00 41.25 0.86
4371 4618 2.366266 GTGGTGGACGCCAACCTATATA 59.634 50.000 6.11 0.00 41.25 0.86
4465 4712 4.370364 TTTCTCTGTGCAGAAAACCAAC 57.630 40.909 3.36 0.00 39.06 3.77
4676 4924 7.156876 TGGAATGATTGTTACCTTGACATTC 57.843 36.000 0.00 0.00 40.34 2.67
4680 4928 4.693566 TGATTGTTACCTTGACATTCCGAC 59.306 41.667 0.00 0.00 30.34 4.79
4805 5053 1.207329 GACTACATCAACTCGGGCCTT 59.793 52.381 0.84 0.00 0.00 4.35
4889 5137 4.373116 GTCTCCGCCCTCGCACAA 62.373 66.667 0.00 0.00 34.03 3.33
5000 5248 0.969894 CCCTCGTCCTGTTTGAGAGT 59.030 55.000 0.00 0.00 31.31 3.24
5003 5251 2.035961 CCTCGTCCTGTTTGAGAGTGAA 59.964 50.000 0.00 0.00 31.31 3.18
5103 5353 2.644676 TGCAGAGTCTGTAGATACGCT 58.355 47.619 21.06 0.00 33.43 5.07
5142 5392 2.743928 CTTGGCTGCCACTCGGTC 60.744 66.667 23.30 0.00 30.78 4.79
5190 5441 8.661352 TTTTCTTTTTAGGAAGCTTTGAATGG 57.339 30.769 0.00 0.00 0.00 3.16
5212 5463 5.013495 TGGTCCTTCAGATGTGAATTCTCTT 59.987 40.000 5.65 1.17 41.96 2.85
5215 5466 4.880696 CCTTCAGATGTGAATTCTCTTCCC 59.119 45.833 5.65 2.12 41.96 3.97
5237 5488 2.549754 GACTGCTGCTTTGTCTTTGCTA 59.450 45.455 0.00 0.00 0.00 3.49
5239 5490 3.571401 ACTGCTGCTTTGTCTTTGCTATT 59.429 39.130 0.00 0.00 0.00 1.73
5241 5492 3.822735 TGCTGCTTTGTCTTTGCTATTCT 59.177 39.130 0.00 0.00 0.00 2.40
5242 5493 4.083110 TGCTGCTTTGTCTTTGCTATTCTC 60.083 41.667 0.00 0.00 0.00 2.87
5282 5541 4.577283 CGAGTTCTCCCTTGTTGGTTTAAA 59.423 41.667 0.00 0.00 0.00 1.52
5406 5666 3.057946 GTGTTTCTGGTTGATCCTTGCTC 60.058 47.826 0.00 0.00 37.07 4.26
5407 5667 3.149196 GTTTCTGGTTGATCCTTGCTCA 58.851 45.455 0.00 0.00 37.07 4.26
5435 5695 2.290896 TGTAGCAACTGGGATTGAAGGG 60.291 50.000 0.00 0.00 0.00 3.95
5448 5708 2.552599 TGAAGGGCACGTTGATGTTA 57.447 45.000 0.00 0.00 36.18 2.41
5468 5728 6.668323 TGTTAAAAGATGCTTGAGTAACTGC 58.332 36.000 0.00 0.00 0.00 4.40
5476 5736 2.341257 CTTGAGTAACTGCGCTGTGAT 58.659 47.619 21.17 8.75 0.00 3.06
5477 5737 2.455674 TGAGTAACTGCGCTGTGATT 57.544 45.000 21.17 10.27 0.00 2.57
5508 5768 6.869206 TCTAAAGCTATGACAACTAGGGTT 57.131 37.500 0.00 0.00 35.86 4.11
5510 5770 7.328737 TCTAAAGCTATGACAACTAGGGTTTC 58.671 38.462 0.00 0.00 32.73 2.78
5522 5782 2.669240 GGTTTCCCCTCTCCGTGG 59.331 66.667 0.00 0.00 0.00 4.94
5565 5825 4.092091 CAGACAAGAGCGTCCATAAGAAAC 59.908 45.833 0.00 0.00 36.52 2.78
5575 5837 1.470051 CATAAGAAACGGGGGTTGGG 58.530 55.000 0.00 0.00 0.00 4.12
5576 5838 0.333652 ATAAGAAACGGGGGTTGGGG 59.666 55.000 0.00 0.00 0.00 4.96
5588 5850 2.044450 TTGGGGCTGCCCTCCTAT 59.956 61.111 34.99 0.00 44.66 2.57
5634 5896 4.180817 ACGCGTCTTTTGATCATGACATA 58.819 39.130 5.58 0.00 0.00 2.29
5645 5907 4.838423 TGATCATGACATACTAACGGGGAT 59.162 41.667 0.00 0.00 0.00 3.85
5693 5955 5.367945 AAAGATAGGTTTATTGCGGGAGA 57.632 39.130 0.00 0.00 0.00 3.71
5790 6052 1.844544 AAAGGGCGGGGTGTAATCGT 61.845 55.000 0.00 0.00 0.00 3.73
5838 6100 2.422519 GGTGATTGAGACCATGCAGGAT 60.423 50.000 0.00 0.00 41.22 3.24
5906 6168 6.145858 TGTTTTCACTATGCATGTGATTTTGC 59.854 34.615 23.49 15.71 42.95 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.154150 GTGTTTGATGCGGCTCAGC 60.154 57.895 0.00 0.00 37.71 4.26
7 8 1.133253 CGTGTTTGATGCGGCTCAG 59.867 57.895 0.00 0.00 0.00 3.35
8 9 2.324330 CCGTGTTTGATGCGGCTCA 61.324 57.895 0.00 0.00 38.99 4.26
9 10 2.480555 CCGTGTTTGATGCGGCTC 59.519 61.111 0.00 0.00 38.99 4.70
12 13 7.690463 CATCAATAGACCGTGTTTGATGCGG 62.690 48.000 10.48 0.00 44.73 5.69
13 14 2.670905 TCAATAGACCGTGTTTGATGCG 59.329 45.455 0.00 0.00 0.00 4.73
14 15 4.591202 CATCAATAGACCGTGTTTGATGC 58.409 43.478 10.48 0.00 44.73 3.91
16 17 5.097742 TCCATCAATAGACCGTGTTTGAT 57.902 39.130 0.00 0.00 38.89 2.57
17 18 4.020573 ACTCCATCAATAGACCGTGTTTGA 60.021 41.667 0.00 0.00 33.06 2.69
18 19 4.093408 CACTCCATCAATAGACCGTGTTTG 59.907 45.833 0.00 0.00 0.00 2.93
19 20 4.020573 TCACTCCATCAATAGACCGTGTTT 60.021 41.667 0.00 0.00 0.00 2.83
20 21 3.513912 TCACTCCATCAATAGACCGTGTT 59.486 43.478 0.00 0.00 0.00 3.32
21 22 3.096852 TCACTCCATCAATAGACCGTGT 58.903 45.455 0.00 0.00 0.00 4.49
22 23 3.801114 TCACTCCATCAATAGACCGTG 57.199 47.619 0.00 0.00 0.00 4.94
23 24 4.162320 ACATTCACTCCATCAATAGACCGT 59.838 41.667 0.00 0.00 0.00 4.83
24 25 4.697514 ACATTCACTCCATCAATAGACCG 58.302 43.478 0.00 0.00 0.00 4.79
25 26 5.059833 GGACATTCACTCCATCAATAGACC 58.940 45.833 0.00 0.00 0.00 3.85
26 27 5.674525 TGGACATTCACTCCATCAATAGAC 58.325 41.667 0.00 0.00 32.52 2.59
27 28 5.955961 TGGACATTCACTCCATCAATAGA 57.044 39.130 0.00 0.00 32.52 1.98
28 29 7.095481 CGTATTGGACATTCACTCCATCAATAG 60.095 40.741 0.00 0.00 37.65 1.73
29 30 6.705825 CGTATTGGACATTCACTCCATCAATA 59.294 38.462 0.00 0.00 37.65 1.90
30 31 5.528690 CGTATTGGACATTCACTCCATCAAT 59.471 40.000 0.00 0.00 37.65 2.57
31 32 4.875536 CGTATTGGACATTCACTCCATCAA 59.124 41.667 0.00 0.00 37.65 2.57
32 33 4.441792 CGTATTGGACATTCACTCCATCA 58.558 43.478 0.00 0.00 37.65 3.07
33 34 3.809832 CCGTATTGGACATTCACTCCATC 59.190 47.826 0.00 0.00 42.00 3.51
34 35 3.808728 CCGTATTGGACATTCACTCCAT 58.191 45.455 0.00 0.00 42.00 3.41
35 36 2.679639 GCCGTATTGGACATTCACTCCA 60.680 50.000 0.00 0.00 42.00 3.86
36 37 1.940613 GCCGTATTGGACATTCACTCC 59.059 52.381 0.00 0.00 42.00 3.85
64 65 1.439679 GTGGTGACGGCCTTTCTAAG 58.560 55.000 0.00 0.00 0.00 2.18
65 66 0.035739 GGTGGTGACGGCCTTTCTAA 59.964 55.000 0.00 0.00 0.00 2.10
66 67 0.834687 AGGTGGTGACGGCCTTTCTA 60.835 55.000 0.00 0.00 35.16 2.10
67 68 1.705997 AAGGTGGTGACGGCCTTTCT 61.706 55.000 0.00 0.00 43.07 2.52
68 69 1.228154 AAGGTGGTGACGGCCTTTC 60.228 57.895 0.00 0.00 43.07 2.62
69 70 1.528309 CAAGGTGGTGACGGCCTTT 60.528 57.895 0.00 0.00 43.07 3.11
70 71 2.113139 CAAGGTGGTGACGGCCTT 59.887 61.111 0.00 3.91 45.40 4.35
71 72 2.847234 TCAAGGTGGTGACGGCCT 60.847 61.111 0.00 0.00 39.59 5.19
72 73 2.185310 ATCTCAAGGTGGTGACGGCC 62.185 60.000 0.00 0.00 0.00 6.13
73 74 0.535335 TATCTCAAGGTGGTGACGGC 59.465 55.000 0.00 0.00 0.00 5.68
74 75 3.889538 TCTATATCTCAAGGTGGTGACGG 59.110 47.826 0.00 0.00 0.00 4.79
75 76 4.580995 ACTCTATATCTCAAGGTGGTGACG 59.419 45.833 0.00 0.00 0.00 4.35
76 77 6.276847 CAACTCTATATCTCAAGGTGGTGAC 58.723 44.000 0.00 0.00 0.00 3.67
77 78 5.163405 GCAACTCTATATCTCAAGGTGGTGA 60.163 44.000 0.00 0.00 0.00 4.02
78 79 5.053145 GCAACTCTATATCTCAAGGTGGTG 58.947 45.833 0.00 0.00 0.00 4.17
79 80 4.101741 GGCAACTCTATATCTCAAGGTGGT 59.898 45.833 0.00 0.00 0.00 4.16
80 81 4.101585 TGGCAACTCTATATCTCAAGGTGG 59.898 45.833 0.00 0.00 37.61 4.61
81 82 5.282055 TGGCAACTCTATATCTCAAGGTG 57.718 43.478 0.00 0.00 37.61 4.00
82 83 6.784969 AGTATGGCAACTCTATATCTCAAGGT 59.215 38.462 0.00 0.00 37.61 3.50
83 84 7.238486 AGTATGGCAACTCTATATCTCAAGG 57.762 40.000 0.00 0.00 37.61 3.61
95 96 6.095720 ACACTAGTTAGAGAGTATGGCAACTC 59.904 42.308 16.87 16.87 45.20 3.01
96 97 5.952947 ACACTAGTTAGAGAGTATGGCAACT 59.047 40.000 0.00 0.00 37.61 3.16
97 98 6.210287 ACACTAGTTAGAGAGTATGGCAAC 57.790 41.667 0.00 0.00 0.00 4.17
98 99 6.210784 ACAACACTAGTTAGAGAGTATGGCAA 59.789 38.462 0.00 0.00 35.85 4.52
99 100 5.715279 ACAACACTAGTTAGAGAGTATGGCA 59.285 40.000 0.00 0.00 35.85 4.92
100 101 6.037098 CACAACACTAGTTAGAGAGTATGGC 58.963 44.000 0.00 0.00 35.85 4.40
101 102 7.094334 TGACACAACACTAGTTAGAGAGTATGG 60.094 40.741 0.00 0.00 35.85 2.74
102 103 7.817641 TGACACAACACTAGTTAGAGAGTATG 58.182 38.462 0.00 0.00 35.85 2.39
103 104 7.997773 TGACACAACACTAGTTAGAGAGTAT 57.002 36.000 0.00 0.00 35.85 2.12
104 105 7.883833 AGATGACACAACACTAGTTAGAGAGTA 59.116 37.037 0.00 0.00 35.85 2.59
105 106 6.717540 AGATGACACAACACTAGTTAGAGAGT 59.282 38.462 0.00 0.00 35.85 3.24
106 107 7.151999 AGATGACACAACACTAGTTAGAGAG 57.848 40.000 0.00 0.00 35.85 3.20
107 108 8.631480 TTAGATGACACAACACTAGTTAGAGA 57.369 34.615 0.00 0.00 35.85 3.10
108 109 9.692749 TTTTAGATGACACAACACTAGTTAGAG 57.307 33.333 0.00 0.00 35.85 2.43
159 160 8.995220 GGATATCTGTGTTTGTAGTGTGTTAAA 58.005 33.333 2.05 0.00 0.00 1.52
160 161 8.151596 TGGATATCTGTGTTTGTAGTGTGTTAA 58.848 33.333 2.05 0.00 0.00 2.01
161 162 7.672240 TGGATATCTGTGTTTGTAGTGTGTTA 58.328 34.615 2.05 0.00 0.00 2.41
162 163 6.530120 TGGATATCTGTGTTTGTAGTGTGTT 58.470 36.000 2.05 0.00 0.00 3.32
163 164 6.109156 TGGATATCTGTGTTTGTAGTGTGT 57.891 37.500 2.05 0.00 0.00 3.72
164 165 8.716646 TTATGGATATCTGTGTTTGTAGTGTG 57.283 34.615 2.05 0.00 0.00 3.82
165 166 9.162764 GTTTATGGATATCTGTGTTTGTAGTGT 57.837 33.333 2.05 0.00 0.00 3.55
166 167 8.328146 CGTTTATGGATATCTGTGTTTGTAGTG 58.672 37.037 2.05 0.00 0.00 2.74
167 168 7.011109 GCGTTTATGGATATCTGTGTTTGTAGT 59.989 37.037 2.05 0.00 0.00 2.73
168 169 7.011016 TGCGTTTATGGATATCTGTGTTTGTAG 59.989 37.037 2.05 0.00 0.00 2.74
169 170 6.819146 TGCGTTTATGGATATCTGTGTTTGTA 59.181 34.615 2.05 0.00 0.00 2.41
170 171 5.645929 TGCGTTTATGGATATCTGTGTTTGT 59.354 36.000 2.05 0.00 0.00 2.83
171 172 6.117911 TGCGTTTATGGATATCTGTGTTTG 57.882 37.500 2.05 0.00 0.00 2.93
172 173 6.942532 ATGCGTTTATGGATATCTGTGTTT 57.057 33.333 2.05 0.00 0.00 2.83
173 174 6.292865 CGAATGCGTTTATGGATATCTGTGTT 60.293 38.462 2.05 0.00 0.00 3.32
174 175 5.177511 CGAATGCGTTTATGGATATCTGTGT 59.822 40.000 2.05 0.00 0.00 3.72
175 176 5.611919 CGAATGCGTTTATGGATATCTGTG 58.388 41.667 2.05 0.00 0.00 3.66
176 177 5.845985 CGAATGCGTTTATGGATATCTGT 57.154 39.130 2.05 0.00 0.00 3.41
204 205 8.805836 TCCAATGGGGAGACATTATTGTCGTC 62.806 46.154 11.12 9.27 45.67 4.20
205 206 7.101062 TCCAATGGGGAGACATTATTGTCGT 62.101 44.000 11.12 1.96 45.67 4.34
206 207 4.685848 TCCAATGGGGAGACATTATTGTCG 60.686 45.833 11.12 0.00 45.67 4.35
207 208 4.792068 TCCAATGGGGAGACATTATTGTC 58.208 43.478 9.30 9.30 42.46 3.18
208 209 4.879295 TCCAATGGGGAGACATTATTGT 57.121 40.909 0.00 0.00 42.15 2.71
219 220 1.832883 CAATGTTCGTCCAATGGGGA 58.167 50.000 0.00 0.00 45.89 4.81
220 221 0.173255 GCAATGTTCGTCCAATGGGG 59.827 55.000 0.00 0.00 38.37 4.96
221 222 0.173255 GGCAATGTTCGTCCAATGGG 59.827 55.000 0.00 0.00 0.00 4.00
222 223 0.179166 CGGCAATGTTCGTCCAATGG 60.179 55.000 0.00 0.00 0.00 3.16
223 224 0.801872 TCGGCAATGTTCGTCCAATG 59.198 50.000 0.00 0.00 0.00 2.82
224 225 1.529226 TTCGGCAATGTTCGTCCAAT 58.471 45.000 0.00 0.00 0.00 3.16
225 226 1.309950 TTTCGGCAATGTTCGTCCAA 58.690 45.000 0.00 0.00 0.00 3.53
226 227 1.265635 CTTTTCGGCAATGTTCGTCCA 59.734 47.619 0.00 0.00 0.00 4.02
227 228 1.963747 CTTTTCGGCAATGTTCGTCC 58.036 50.000 0.00 0.00 0.00 4.79
228 229 1.327507 GCTTTTCGGCAATGTTCGTC 58.672 50.000 0.00 0.00 0.00 4.20
229 230 0.039527 GGCTTTTCGGCAATGTTCGT 60.040 50.000 0.00 0.00 38.25 3.85
230 231 0.039617 TGGCTTTTCGGCAATGTTCG 60.040 50.000 0.00 0.00 46.25 3.95
231 232 3.883997 TGGCTTTTCGGCAATGTTC 57.116 47.368 0.00 0.00 46.25 3.18
252 253 1.064758 GTATGACAGGTGGAATGCCCA 60.065 52.381 0.00 0.00 44.25 5.36
253 254 1.680338 GTATGACAGGTGGAATGCCC 58.320 55.000 0.00 0.00 0.00 5.36
254 255 1.299541 CGTATGACAGGTGGAATGCC 58.700 55.000 0.00 0.00 0.00 4.40
255 256 0.657840 GCGTATGACAGGTGGAATGC 59.342 55.000 0.00 0.00 0.00 3.56
256 257 1.299541 GGCGTATGACAGGTGGAATG 58.700 55.000 0.00 0.00 0.00 2.67
257 258 0.180406 GGGCGTATGACAGGTGGAAT 59.820 55.000 0.00 0.00 0.00 3.01
258 259 1.195442 TGGGCGTATGACAGGTGGAA 61.195 55.000 0.00 0.00 0.00 3.53
259 260 1.195442 TTGGGCGTATGACAGGTGGA 61.195 55.000 0.00 0.00 0.00 4.02
260 261 0.322098 TTTGGGCGTATGACAGGTGG 60.322 55.000 0.00 0.00 0.00 4.61
261 262 1.086696 CTTTGGGCGTATGACAGGTG 58.913 55.000 0.00 0.00 0.00 4.00
262 263 0.035439 CCTTTGGGCGTATGACAGGT 60.035 55.000 0.00 0.00 0.00 4.00
263 264 2.780595 CCTTTGGGCGTATGACAGG 58.219 57.895 0.00 0.00 0.00 4.00
285 286 0.796927 GCTTCGGTGTCTTAAGGCAC 59.203 55.000 28.30 28.30 35.07 5.01
286 287 0.394938 TGCTTCGGTGTCTTAAGGCA 59.605 50.000 5.45 5.45 0.00 4.75
287 288 1.079503 CTGCTTCGGTGTCTTAAGGC 58.920 55.000 0.00 0.00 0.00 4.35
288 289 1.079503 GCTGCTTCGGTGTCTTAAGG 58.920 55.000 1.85 0.00 0.00 2.69
289 290 0.716108 CGCTGCTTCGGTGTCTTAAG 59.284 55.000 0.00 0.00 0.00 1.85
290 291 0.032952 ACGCTGCTTCGGTGTCTTAA 59.967 50.000 0.00 0.00 0.00 1.85
291 292 0.388134 GACGCTGCTTCGGTGTCTTA 60.388 55.000 10.99 0.00 44.14 2.10
292 293 1.664965 GACGCTGCTTCGGTGTCTT 60.665 57.895 10.99 0.00 44.14 3.01
293 294 2.049063 GACGCTGCTTCGGTGTCT 60.049 61.111 10.99 0.00 44.14 3.41
294 295 3.112709 GGACGCTGCTTCGGTGTC 61.113 66.667 10.05 10.05 46.03 3.67
301 302 4.722700 AATGCCCGGACGCTGCTT 62.723 61.111 0.73 0.00 0.00 3.91
302 303 4.722700 AAATGCCCGGACGCTGCT 62.723 61.111 0.73 0.00 0.00 4.24
303 304 4.481112 CAAATGCCCGGACGCTGC 62.481 66.667 0.73 0.00 0.00 5.25
304 305 1.705337 CTACAAATGCCCGGACGCTG 61.705 60.000 0.73 0.00 0.00 5.18
305 306 1.449601 CTACAAATGCCCGGACGCT 60.450 57.895 0.73 0.00 0.00 5.07
306 307 1.702491 GACTACAAATGCCCGGACGC 61.702 60.000 0.73 0.00 0.00 5.19
307 308 1.418342 CGACTACAAATGCCCGGACG 61.418 60.000 0.73 0.00 0.00 4.79
308 309 0.108520 TCGACTACAAATGCCCGGAC 60.109 55.000 0.73 0.00 0.00 4.79
309 310 0.108520 GTCGACTACAAATGCCCGGA 60.109 55.000 8.70 0.00 0.00 5.14
310 311 1.418342 CGTCGACTACAAATGCCCGG 61.418 60.000 14.70 0.00 0.00 5.73
311 312 1.418342 CCGTCGACTACAAATGCCCG 61.418 60.000 14.70 0.00 0.00 6.13
312 313 0.390735 ACCGTCGACTACAAATGCCC 60.391 55.000 14.70 0.00 0.00 5.36
313 314 2.190981 CTACCGTCGACTACAAATGCC 58.809 52.381 14.70 0.00 0.00 4.40
314 315 2.190981 CCTACCGTCGACTACAAATGC 58.809 52.381 14.70 0.00 0.00 3.56
315 316 2.424601 TCCCTACCGTCGACTACAAATG 59.575 50.000 14.70 0.00 0.00 2.32
316 317 2.726821 TCCCTACCGTCGACTACAAAT 58.273 47.619 14.70 0.00 0.00 2.32
317 318 2.198827 TCCCTACCGTCGACTACAAA 57.801 50.000 14.70 0.00 0.00 2.83
318 319 2.198827 TTCCCTACCGTCGACTACAA 57.801 50.000 14.70 0.00 0.00 2.41
319 320 2.198827 TTTCCCTACCGTCGACTACA 57.801 50.000 14.70 0.00 0.00 2.74
320 321 3.442100 CATTTTCCCTACCGTCGACTAC 58.558 50.000 14.70 0.00 0.00 2.73
321 322 2.159198 GCATTTTCCCTACCGTCGACTA 60.159 50.000 14.70 0.00 0.00 2.59
322 323 1.405121 GCATTTTCCCTACCGTCGACT 60.405 52.381 14.70 0.00 0.00 4.18
323 324 1.004595 GCATTTTCCCTACCGTCGAC 58.995 55.000 5.18 5.18 0.00 4.20
324 325 0.458889 CGCATTTTCCCTACCGTCGA 60.459 55.000 0.00 0.00 0.00 4.20
325 326 0.458889 TCGCATTTTCCCTACCGTCG 60.459 55.000 0.00 0.00 0.00 5.12
326 327 1.287425 CTCGCATTTTCCCTACCGTC 58.713 55.000 0.00 0.00 0.00 4.79
327 328 0.743345 GCTCGCATTTTCCCTACCGT 60.743 55.000 0.00 0.00 0.00 4.83
328 329 0.742990 TGCTCGCATTTTCCCTACCG 60.743 55.000 0.00 0.00 0.00 4.02
329 330 1.680338 ATGCTCGCATTTTCCCTACC 58.320 50.000 0.00 0.00 31.82 3.18
330 331 3.248602 CACTATGCTCGCATTTTCCCTAC 59.751 47.826 9.94 0.00 37.82 3.18
331 332 3.466836 CACTATGCTCGCATTTTCCCTA 58.533 45.455 9.94 0.00 37.82 3.53
332 333 2.292267 CACTATGCTCGCATTTTCCCT 58.708 47.619 9.94 0.00 37.82 4.20
333 334 1.334869 CCACTATGCTCGCATTTTCCC 59.665 52.381 9.94 0.00 37.82 3.97
334 335 1.268743 GCCACTATGCTCGCATTTTCC 60.269 52.381 9.94 0.00 37.82 3.13
335 336 1.401552 TGCCACTATGCTCGCATTTTC 59.598 47.619 9.94 0.00 37.82 2.29
336 337 1.462616 TGCCACTATGCTCGCATTTT 58.537 45.000 9.94 0.00 37.82 1.82
337 338 1.133025 GTTGCCACTATGCTCGCATTT 59.867 47.619 9.94 0.00 37.82 2.32
338 339 0.734889 GTTGCCACTATGCTCGCATT 59.265 50.000 9.94 0.00 37.82 3.56
339 340 0.107508 AGTTGCCACTATGCTCGCAT 60.108 50.000 9.57 9.57 40.19 4.73
340 341 0.321564 AAGTTGCCACTATGCTCGCA 60.322 50.000 0.00 0.00 30.68 5.10
341 342 0.804989 AAAGTTGCCACTATGCTCGC 59.195 50.000 0.00 0.00 30.68 5.03
342 343 3.521560 TCTAAAGTTGCCACTATGCTCG 58.478 45.455 0.00 0.00 30.68 5.03
343 344 4.938226 AGTTCTAAAGTTGCCACTATGCTC 59.062 41.667 0.00 0.00 30.68 4.26
344 345 4.911390 AGTTCTAAAGTTGCCACTATGCT 58.089 39.130 0.00 0.00 30.68 3.79
345 346 5.629079 AAGTTCTAAAGTTGCCACTATGC 57.371 39.130 0.00 0.00 30.68 3.14
346 347 8.784043 AGTTTAAGTTCTAAAGTTGCCACTATG 58.216 33.333 0.00 0.00 30.68 2.23
347 348 8.919777 AGTTTAAGTTCTAAAGTTGCCACTAT 57.080 30.769 0.00 0.00 30.68 2.12
348 349 8.208903 AGAGTTTAAGTTCTAAAGTTGCCACTA 58.791 33.333 0.00 0.00 30.68 2.74
349 350 7.054751 AGAGTTTAAGTTCTAAAGTTGCCACT 58.945 34.615 0.00 0.00 33.11 4.00
350 351 7.260558 AGAGTTTAAGTTCTAAAGTTGCCAC 57.739 36.000 0.00 0.00 0.00 5.01
356 357 9.833917 GCCCATATAGAGTTTAAGTTCTAAAGT 57.166 33.333 3.13 0.00 30.33 2.66
358 359 9.832445 CAGCCCATATAGAGTTTAAGTTCTAAA 57.168 33.333 3.13 0.00 30.33 1.85
359 360 8.429641 CCAGCCCATATAGAGTTTAAGTTCTAA 58.570 37.037 3.13 0.00 30.33 2.10
360 361 7.567622 ACCAGCCCATATAGAGTTTAAGTTCTA 59.432 37.037 1.84 1.84 0.00 2.10
361 362 6.387220 ACCAGCCCATATAGAGTTTAAGTTCT 59.613 38.462 0.00 0.00 0.00 3.01
362 363 6.592870 ACCAGCCCATATAGAGTTTAAGTTC 58.407 40.000 0.00 0.00 0.00 3.01
363 364 6.576778 ACCAGCCCATATAGAGTTTAAGTT 57.423 37.500 0.00 0.00 0.00 2.66
364 365 6.576778 AACCAGCCCATATAGAGTTTAAGT 57.423 37.500 0.00 0.00 0.00 2.24
365 366 7.054124 TCAAACCAGCCCATATAGAGTTTAAG 58.946 38.462 0.00 0.00 0.00 1.85
366 367 6.964464 TCAAACCAGCCCATATAGAGTTTAA 58.036 36.000 0.00 0.00 0.00 1.52
367 368 6.569127 TCAAACCAGCCCATATAGAGTTTA 57.431 37.500 0.00 0.00 0.00 2.01
368 369 5.450818 TCAAACCAGCCCATATAGAGTTT 57.549 39.130 0.00 0.00 0.00 2.66
369 370 5.132648 TGATCAAACCAGCCCATATAGAGTT 59.867 40.000 0.00 0.00 0.00 3.01
370 371 4.660303 TGATCAAACCAGCCCATATAGAGT 59.340 41.667 0.00 0.00 0.00 3.24
371 372 5.233083 TGATCAAACCAGCCCATATAGAG 57.767 43.478 0.00 0.00 0.00 2.43
372 373 5.073554 ACATGATCAAACCAGCCCATATAGA 59.926 40.000 0.00 0.00 0.00 1.98
373 374 5.319453 ACATGATCAAACCAGCCCATATAG 58.681 41.667 0.00 0.00 0.00 1.31
374 375 5.323382 ACATGATCAAACCAGCCCATATA 57.677 39.130 0.00 0.00 0.00 0.86
375 376 4.188937 ACATGATCAAACCAGCCCATAT 57.811 40.909 0.00 0.00 0.00 1.78
376 377 3.668141 ACATGATCAAACCAGCCCATA 57.332 42.857 0.00 0.00 0.00 2.74
377 378 2.498481 CAACATGATCAAACCAGCCCAT 59.502 45.455 0.00 0.00 0.00 4.00
378 379 1.894466 CAACATGATCAAACCAGCCCA 59.106 47.619 0.00 0.00 0.00 5.36
379 380 1.205417 CCAACATGATCAAACCAGCCC 59.795 52.381 0.00 0.00 0.00 5.19
380 381 1.895131 ACCAACATGATCAAACCAGCC 59.105 47.619 0.00 0.00 0.00 4.85
381 382 2.414559 CGACCAACATGATCAAACCAGC 60.415 50.000 0.00 0.00 0.00 4.85
382 383 3.073678 TCGACCAACATGATCAAACCAG 58.926 45.455 0.00 0.00 0.00 4.00
383 384 3.133141 TCGACCAACATGATCAAACCA 57.867 42.857 0.00 0.00 0.00 3.67
384 385 4.497473 TTTCGACCAACATGATCAAACC 57.503 40.909 0.00 0.00 0.00 3.27
385 386 6.640499 TCAATTTTCGACCAACATGATCAAAC 59.360 34.615 0.00 0.00 0.00 2.93
386 387 6.640499 GTCAATTTTCGACCAACATGATCAAA 59.360 34.615 0.00 0.00 0.00 2.69
387 388 6.148948 GTCAATTTTCGACCAACATGATCAA 58.851 36.000 0.00 0.00 0.00 2.57
388 389 5.240403 TGTCAATTTTCGACCAACATGATCA 59.760 36.000 0.00 0.00 32.15 2.92
389 390 5.698832 TGTCAATTTTCGACCAACATGATC 58.301 37.500 0.00 0.00 32.15 2.92
390 391 5.703978 TGTCAATTTTCGACCAACATGAT 57.296 34.783 0.00 0.00 32.15 2.45
391 392 5.067153 AGTTGTCAATTTTCGACCAACATGA 59.933 36.000 0.00 0.00 32.05 3.07
392 393 5.280945 AGTTGTCAATTTTCGACCAACATG 58.719 37.500 0.00 0.00 32.05 3.21
393 394 5.514274 AGTTGTCAATTTTCGACCAACAT 57.486 34.783 0.00 0.00 32.05 2.71
394 395 4.974368 AGTTGTCAATTTTCGACCAACA 57.026 36.364 0.00 0.00 32.05 3.33
395 396 5.004345 CACAAGTTGTCAATTTTCGACCAAC 59.996 40.000 5.27 0.00 32.15 3.77
396 397 5.098893 CACAAGTTGTCAATTTTCGACCAA 58.901 37.500 5.27 0.00 32.15 3.67
397 398 4.156922 ACACAAGTTGTCAATTTTCGACCA 59.843 37.500 5.27 0.00 29.79 4.02
398 399 4.668289 ACACAAGTTGTCAATTTTCGACC 58.332 39.130 5.27 0.00 29.79 4.79
399 400 7.908193 ATTACACAAGTTGTCAATTTTCGAC 57.092 32.000 5.27 0.00 39.91 4.20
400 401 8.832521 AGTATTACACAAGTTGTCAATTTTCGA 58.167 29.630 5.27 0.00 39.91 3.71
401 402 9.103048 GAGTATTACACAAGTTGTCAATTTTCG 57.897 33.333 5.27 0.00 39.91 3.46
402 403 9.394477 GGAGTATTACACAAGTTGTCAATTTTC 57.606 33.333 5.27 9.20 39.91 2.29
403 404 8.357402 GGGAGTATTACACAAGTTGTCAATTTT 58.643 33.333 5.27 1.52 39.91 1.82
404 405 7.724061 AGGGAGTATTACACAAGTTGTCAATTT 59.276 33.333 5.27 1.83 39.91 1.82
405 406 7.231467 AGGGAGTATTACACAAGTTGTCAATT 58.769 34.615 5.27 0.00 39.91 2.32
406 407 6.779860 AGGGAGTATTACACAAGTTGTCAAT 58.220 36.000 5.27 10.93 39.91 2.57
407 408 6.182507 AGGGAGTATTACACAAGTTGTCAA 57.817 37.500 5.27 3.80 39.91 3.18
408 409 5.279809 GGAGGGAGTATTACACAAGTTGTCA 60.280 44.000 5.27 0.00 39.91 3.58
409 410 5.176592 GGAGGGAGTATTACACAAGTTGTC 58.823 45.833 5.27 0.00 39.91 3.18
410 411 4.322499 CGGAGGGAGTATTACACAAGTTGT 60.322 45.833 1.64 1.64 42.84 3.32
411 412 4.181578 CGGAGGGAGTATTACACAAGTTG 58.818 47.826 0.00 0.00 0.00 3.16
412 413 3.836562 ACGGAGGGAGTATTACACAAGTT 59.163 43.478 0.00 0.00 0.00 2.66
413 414 3.438183 ACGGAGGGAGTATTACACAAGT 58.562 45.455 0.00 0.00 0.00 3.16
414 415 3.700038 AGACGGAGGGAGTATTACACAAG 59.300 47.826 0.00 0.00 0.00 3.16
415 416 3.698040 GAGACGGAGGGAGTATTACACAA 59.302 47.826 0.00 0.00 0.00 3.33
416 417 3.285484 GAGACGGAGGGAGTATTACACA 58.715 50.000 0.00 0.00 0.00 3.72
417 418 3.285484 TGAGACGGAGGGAGTATTACAC 58.715 50.000 0.00 0.00 0.00 2.90
418 419 3.657398 TGAGACGGAGGGAGTATTACA 57.343 47.619 0.00 0.00 0.00 2.41
419 420 4.996788 TTTGAGACGGAGGGAGTATTAC 57.003 45.455 0.00 0.00 0.00 1.89
421 422 4.903045 TTTTTGAGACGGAGGGAGTATT 57.097 40.909 0.00 0.00 0.00 1.89
559 560 7.627340 ACAAAATAAGTGTCTTGACACGTAAG 58.373 34.615 24.71 18.58 44.71 2.34
560 561 7.278203 TGACAAAATAAGTGTCTTGACACGTAA 59.722 33.333 24.71 16.32 44.70 3.18
561 562 6.757478 TGACAAAATAAGTGTCTTGACACGTA 59.243 34.615 23.73 23.73 44.70 3.57
562 563 5.583061 TGACAAAATAAGTGTCTTGACACGT 59.417 36.000 22.91 22.21 44.70 4.49
563 564 5.901884 GTGACAAAATAAGTGTCTTGACACG 59.098 40.000 22.91 12.53 44.70 4.49
564 565 6.199393 GGTGACAAAATAAGTGTCTTGACAC 58.801 40.000 22.08 22.08 44.70 3.67
565 566 5.007234 CGGTGACAAAATAAGTGTCTTGACA 59.993 40.000 6.17 0.00 44.70 3.58
566 567 5.440685 CGGTGACAAAATAAGTGTCTTGAC 58.559 41.667 6.17 0.00 44.70 3.18
567 568 4.024387 GCGGTGACAAAATAAGTGTCTTGA 60.024 41.667 6.17 0.00 44.70 3.02
568 569 4.219033 GCGGTGACAAAATAAGTGTCTTG 58.781 43.478 6.17 0.00 44.70 3.02
569 570 3.880490 TGCGGTGACAAAATAAGTGTCTT 59.120 39.130 6.17 0.00 44.70 3.01
570 571 3.472652 TGCGGTGACAAAATAAGTGTCT 58.527 40.909 6.17 0.00 44.70 3.41
571 572 3.889196 TGCGGTGACAAAATAAGTGTC 57.111 42.857 0.00 0.00 44.67 3.67
572 573 4.640789 TTTGCGGTGACAAAATAAGTGT 57.359 36.364 0.00 0.00 36.62 3.55
573 574 5.957910 TTTTTGCGGTGACAAAATAAGTG 57.042 34.783 3.53 0.00 45.98 3.16
600 601 7.508977 TCCTGGGTCTCAAAATAAGTGATTTTT 59.491 33.333 0.00 0.00 43.83 1.94
601 602 7.010160 TCCTGGGTCTCAAAATAAGTGATTTT 58.990 34.615 0.00 0.00 46.60 1.82
602 603 6.552008 TCCTGGGTCTCAAAATAAGTGATTT 58.448 36.000 0.00 0.00 39.56 2.17
603 604 6.139679 TCCTGGGTCTCAAAATAAGTGATT 57.860 37.500 0.00 0.00 0.00 2.57
604 605 5.251700 ACTCCTGGGTCTCAAAATAAGTGAT 59.748 40.000 0.00 0.00 0.00 3.06
605 606 4.597507 ACTCCTGGGTCTCAAAATAAGTGA 59.402 41.667 0.00 0.00 0.00 3.41
606 607 4.911390 ACTCCTGGGTCTCAAAATAAGTG 58.089 43.478 0.00 0.00 0.00 3.16
607 608 6.697641 TTACTCCTGGGTCTCAAAATAAGT 57.302 37.500 0.00 0.00 0.00 2.24
608 609 6.543831 CCATTACTCCTGGGTCTCAAAATAAG 59.456 42.308 0.00 0.00 0.00 1.73
609 610 6.423182 CCATTACTCCTGGGTCTCAAAATAA 58.577 40.000 0.00 0.00 0.00 1.40
610 611 5.631481 GCCATTACTCCTGGGTCTCAAAATA 60.631 44.000 0.00 0.00 34.16 1.40
611 612 4.860022 CCATTACTCCTGGGTCTCAAAAT 58.140 43.478 0.00 0.00 0.00 1.82
612 613 3.561313 GCCATTACTCCTGGGTCTCAAAA 60.561 47.826 0.00 0.00 34.16 2.44
613 614 2.026262 GCCATTACTCCTGGGTCTCAAA 60.026 50.000 0.00 0.00 34.16 2.69
614 615 1.559682 GCCATTACTCCTGGGTCTCAA 59.440 52.381 0.00 0.00 34.16 3.02
615 616 1.204146 GCCATTACTCCTGGGTCTCA 58.796 55.000 0.00 0.00 34.16 3.27
616 617 0.470341 GGCCATTACTCCTGGGTCTC 59.530 60.000 0.00 0.00 34.16 3.36
617 618 0.044855 AGGCCATTACTCCTGGGTCT 59.955 55.000 5.01 0.00 34.16 3.85
618 619 0.470341 GAGGCCATTACTCCTGGGTC 59.530 60.000 5.01 0.00 34.16 4.46
619 620 0.044855 AGAGGCCATTACTCCTGGGT 59.955 55.000 5.01 0.00 35.58 4.51
620 621 2.103153 TAGAGGCCATTACTCCTGGG 57.897 55.000 5.01 0.00 35.58 4.45
621 622 4.322049 CGTTATAGAGGCCATTACTCCTGG 60.322 50.000 5.01 0.00 35.58 4.45
622 623 4.281182 ACGTTATAGAGGCCATTACTCCTG 59.719 45.833 5.01 0.00 35.58 3.86
623 624 4.281182 CACGTTATAGAGGCCATTACTCCT 59.719 45.833 5.01 0.00 35.58 3.69
624 625 4.557205 CACGTTATAGAGGCCATTACTCC 58.443 47.826 5.01 0.00 35.58 3.85
625 626 3.988517 GCACGTTATAGAGGCCATTACTC 59.011 47.826 5.01 0.00 35.20 2.59
626 627 3.244112 GGCACGTTATAGAGGCCATTACT 60.244 47.826 5.01 0.84 44.01 2.24
627 628 3.064931 GGCACGTTATAGAGGCCATTAC 58.935 50.000 5.01 0.00 44.01 1.89
628 629 3.396260 GGCACGTTATAGAGGCCATTA 57.604 47.619 5.01 0.00 44.01 1.90
629 630 2.256117 GGCACGTTATAGAGGCCATT 57.744 50.000 5.01 0.00 44.01 3.16
660 661 2.516923 GACTCGTGTATTGAGTGACGG 58.483 52.381 0.00 0.00 46.29 4.79
725 726 2.577606 TTGGATTCGGCAGGAAAGAA 57.422 45.000 0.00 0.00 38.36 2.52
786 787 2.131067 GCGAGAGGGAGGGGAGAAG 61.131 68.421 0.00 0.00 0.00 2.85
787 788 2.042843 GCGAGAGGGAGGGGAGAA 60.043 66.667 0.00 0.00 0.00 2.87
788 789 4.144727 GGCGAGAGGGAGGGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
920 934 4.341502 CACGCAAGGGCAAACGGG 62.342 66.667 0.00 0.00 46.39 5.28
1041 1055 3.604629 ACCTCGGTGATCTCGTGG 58.395 61.111 20.30 20.30 44.04 4.94
1063 1077 1.078143 GTGCAGGATTTCCGCCTCT 60.078 57.895 9.75 0.00 42.08 3.69
1065 1079 0.251341 AAAGTGCAGGATTTCCGCCT 60.251 50.000 9.75 0.00 42.08 5.52
1067 1081 0.179189 CGAAAGTGCAGGATTTCCGC 60.179 55.000 11.41 6.51 42.08 5.54
1082 1096 1.076533 GCAGAATCGACGAGGCGAAA 61.077 55.000 4.74 0.00 44.22 3.46
1180 1195 2.415697 GCAAAAGGCAGTAAAAGCGA 57.584 45.000 0.00 0.00 43.97 4.93
1353 1368 2.744202 AGGACTGCTTGATTGCTTAACG 59.256 45.455 0.00 0.00 0.00 3.18
1374 1395 4.153117 GCAACACAACAATTTTCAACACCA 59.847 37.500 0.00 0.00 0.00 4.17
1402 1425 0.326522 TGCATCTGGAGAAGGGCCTA 60.327 55.000 6.41 0.00 0.00 3.93
1497 1520 2.228822 GGCATCGAAAGACCAACACAAT 59.771 45.455 0.00 0.00 46.97 2.71
1508 1531 0.677731 TGGGCTCTTGGCATCGAAAG 60.678 55.000 0.00 0.00 44.01 2.62
1595 1624 4.592485 ATCCAGAACGAGCCATAACTAG 57.408 45.455 0.00 0.00 0.00 2.57
1712 1824 5.296531 GGAAACACGGTTGTCTTTTAGGTAA 59.703 40.000 0.00 0.00 33.55 2.85
1730 1842 9.703892 CATACCAAACAAAAATATGAGGAAACA 57.296 29.630 0.00 0.00 0.00 2.83
1775 1896 2.550606 GACATAAAAGGGTGCACACGAA 59.449 45.455 20.43 3.55 0.00 3.85
1776 1897 2.147958 GACATAAAAGGGTGCACACGA 58.852 47.619 20.43 3.69 0.00 4.35
2070 2274 3.478857 AAGTCAATGTTGTACCACCGA 57.521 42.857 0.00 0.00 0.00 4.69
2256 2485 4.036616 GGCAAAACCATTTCATGCAACTTT 59.963 37.500 0.00 0.00 38.73 2.66
2257 2486 3.565063 GGCAAAACCATTTCATGCAACTT 59.435 39.130 0.00 0.00 38.73 2.66
2305 2534 8.807118 CATATCCTAATCTTGTAGCCTTGTAGA 58.193 37.037 0.00 0.00 0.00 2.59
2414 2652 5.703978 TTCCACAATTTATGGTGTCACTG 57.296 39.130 2.35 0.00 38.47 3.66
2415 2653 6.916360 ATTTCCACAATTTATGGTGTCACT 57.084 33.333 2.35 0.00 38.47 3.41
2416 2654 7.826690 AGTATTTCCACAATTTATGGTGTCAC 58.173 34.615 5.58 0.00 38.47 3.67
2417 2655 8.415950 AAGTATTTCCACAATTTATGGTGTCA 57.584 30.769 5.58 0.00 38.47 3.58
2418 2656 8.519526 TGAAGTATTTCCACAATTTATGGTGTC 58.480 33.333 5.58 0.00 38.47 3.67
2419 2657 8.415950 TGAAGTATTTCCACAATTTATGGTGT 57.584 30.769 5.58 0.00 38.47 4.16
2504 2742 7.786178 ATAACATGCGATTTAACTCAGCTAA 57.214 32.000 0.00 0.00 0.00 3.09
2519 2757 5.065704 AGAGGCAGTAGATATAACATGCG 57.934 43.478 0.00 0.00 34.54 4.73
2693 2931 1.194218 TGATGCAGAATCTCCACCGA 58.806 50.000 0.00 0.00 36.15 4.69
2815 3053 6.228995 GGAGTGAATCAGAGCATTCATATGA 58.771 40.000 0.00 0.00 43.17 2.15
2822 3060 1.918262 TGGGGAGTGAATCAGAGCATT 59.082 47.619 0.00 0.00 0.00 3.56
2849 3087 9.877137 TTAATACATCAACATTATCATTCACGC 57.123 29.630 0.00 0.00 0.00 5.34
3009 3247 3.186119 CACATGTTTTCAAACCGTGCTT 58.814 40.909 0.00 0.00 38.11 3.91
3010 3248 2.165437 ACACATGTTTTCAAACCGTGCT 59.835 40.909 16.34 6.64 41.34 4.40
3110 3348 5.690865 ACTGTTTATTCCAGTTGAAGGACA 58.309 37.500 0.00 0.00 40.14 4.02
3220 3458 5.954639 GTGCTTCCACAGTCTCATGACGT 62.955 52.174 0.00 0.00 41.67 4.34
3279 3517 4.274978 TCATACGTAGAATCCAGGACACA 58.725 43.478 0.08 0.00 0.00 3.72
3546 3785 7.554118 ACTGCATTAACTATGTTGCTTGTAGAT 59.446 33.333 0.00 0.00 36.57 1.98
3592 3831 7.118245 TGACTTTCATGTTAACTGATGCTACAG 59.882 37.037 7.22 8.66 42.78 2.74
3766 4005 9.921637 CAACCAATTAAAACATACAGTGGTTAT 57.078 29.630 4.55 0.00 44.25 1.89
3994 4235 5.887598 TCACAGGGATATTTGAACAAGATGG 59.112 40.000 0.00 0.00 0.00 3.51
4257 4503 7.264373 ACAACAATAAGAAAGACAAGTCCTG 57.736 36.000 0.00 0.00 0.00 3.86
4314 4560 4.637483 AGATTAATGGCCACATTTGTCG 57.363 40.909 8.16 0.00 44.69 4.35
4315 4561 7.547227 ACTTAAGATTAATGGCCACATTTGTC 58.453 34.615 8.16 1.66 44.69 3.18
4465 4712 6.760770 AGAAGAGATTGAAAAGCTTATCCTCG 59.239 38.462 0.00 0.00 41.66 4.63
4676 4924 3.622060 AATGGGAAGGTGGCGTCGG 62.622 63.158 0.00 0.00 0.00 4.79
4680 4928 0.109319 CGAAAAATGGGAAGGTGGCG 60.109 55.000 0.00 0.00 0.00 5.69
5000 5248 2.035155 TCGGTCGCCTCCTCTTCA 59.965 61.111 0.00 0.00 0.00 3.02
5055 5303 2.029666 CGAGATCCGGATGGTGCC 59.970 66.667 24.82 6.85 36.30 5.01
5103 5353 3.073062 GCAAAAGCTATATCCCTGGGAGA 59.927 47.826 21.99 17.87 34.05 3.71
5134 5384 1.666888 GCAAAAGCATTGGACCGAGTG 60.667 52.381 4.67 0.00 0.00 3.51
5142 5392 0.883833 AGAGGACGCAAAAGCATTGG 59.116 50.000 4.67 0.00 0.00 3.16
5190 5441 5.584251 GGAAGAGAATTCACATCTGAAGGAC 59.416 44.000 8.44 0.00 39.83 3.85
5212 5463 1.301716 GACAAAGCAGCAGTCGGGA 60.302 57.895 0.00 0.00 0.00 5.14
5215 5466 1.923316 GCAAAGACAAAGCAGCAGTCG 60.923 52.381 0.00 0.00 37.36 4.18
5241 5492 2.680352 GGACGTGGCTCAGGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
5242 5493 3.775654 GGGACGTGGCTCAGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
5282 5541 2.834549 CAGTACAATCCTCTGGTCACCT 59.165 50.000 0.00 0.00 0.00 4.00
5435 5695 4.475944 AGCATCTTTTAACATCAACGTGC 58.524 39.130 0.00 0.00 0.00 5.34
5448 5708 3.365364 GCGCAGTTACTCAAGCATCTTTT 60.365 43.478 0.30 0.00 0.00 2.27
5513 5773 5.567138 AGAAATTAATTTGCCACGGAGAG 57.433 39.130 17.98 0.00 0.00 3.20
5518 5778 8.909708 TGATTAGAAGAAATTAATTTGCCACG 57.090 30.769 17.98 0.00 0.00 4.94
5588 5850 3.482436 ACATTTAGTTTCACGAAGCCCA 58.518 40.909 0.00 0.00 0.00 5.36
5634 5896 0.837272 CACCCATCATCCCCGTTAGT 59.163 55.000 0.00 0.00 0.00 2.24
5645 5907 1.277273 CTCTCAAGACTGCACCCATCA 59.723 52.381 0.00 0.00 0.00 3.07
5670 5932 6.488769 TCTCCCGCAATAAACCTATCTTTA 57.511 37.500 0.00 0.00 0.00 1.85
5693 5955 8.342634 CCGTACAATATTCGATCTTTCCATTTT 58.657 33.333 0.00 0.00 0.00 1.82
5790 6052 8.927411 TCCATATTGTCTGAGTTGATGATTAGA 58.073 33.333 0.00 0.00 0.00 2.10
5838 6100 1.918293 ACCCGCTGATTGTCCTCCA 60.918 57.895 0.00 0.00 0.00 3.86
5906 6168 4.174009 ACAATGTTCGAATCTAGTCACGG 58.826 43.478 0.00 0.00 0.00 4.94
5935 6198 4.144297 TCATGAGCTACTTTGTTTGCCTT 58.856 39.130 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.