Multiple sequence alignment - TraesCS1D01G270500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G270500 chr1D 100.000 5865 0 0 1 5865 365441325 365435461 0.000000e+00 10831.0
1 TraesCS1D01G270500 chr1A 95.484 2458 92 11 2719 5168 464252102 464249656 0.000000e+00 3906.0
2 TraesCS1D01G270500 chr1A 92.486 1251 54 18 581 1803 464254237 464252999 0.000000e+00 1753.0
3 TraesCS1D01G270500 chr1A 94.744 704 19 3 5165 5865 464249617 464248929 0.000000e+00 1079.0
4 TraesCS1D01G270500 chr1A 95.279 466 22 0 1800 2265 464253046 464252581 0.000000e+00 739.0
5 TraesCS1D01G270500 chr1A 87.608 347 18 7 2388 2731 464252571 464252247 4.290000e-101 379.0
6 TraesCS1D01G270500 chr1A 79.128 321 40 15 1 310 259045055 259044751 4.640000e-46 196.0
7 TraesCS1D01G270500 chr1A 85.484 62 9 0 2267 2328 481924422 481924483 1.360000e-06 65.8
8 TraesCS1D01G270500 chr1A 100.000 31 0 0 285 315 530591089 530591059 2.280000e-04 58.4
9 TraesCS1D01G270500 chr1B 94.530 1627 80 6 3544 5168 488821800 488820181 0.000000e+00 2503.0
10 TraesCS1D01G270500 chr1B 96.883 1219 33 5 2332 3547 488823138 488821922 0.000000e+00 2036.0
11 TraesCS1D01G270500 chr1B 94.640 1306 58 8 979 2277 488824438 488823138 0.000000e+00 2013.0
12 TraesCS1D01G270500 chr1B 95.028 704 19 3 5165 5865 488820142 488819452 0.000000e+00 1092.0
13 TraesCS1D01G270500 chr1B 89.910 446 32 7 432 876 488825163 488824730 3.970000e-156 562.0
14 TraesCS1D01G270500 chr1B 97.959 49 1 0 2327 2375 67444596 67444644 1.050000e-12 86.1
15 TraesCS1D01G270500 chr1B 88.710 62 7 0 2267 2328 254461179 254461118 6.300000e-10 76.8
16 TraesCS1D01G270500 chr5A 91.039 491 36 7 2544 3029 36553861 36553374 0.000000e+00 656.0
17 TraesCS1D01G270500 chr5A 81.923 260 37 8 5 260 608853663 608853410 1.660000e-50 211.0
18 TraesCS1D01G270500 chr5A 92.593 108 8 0 3546 3653 571756111 571756218 7.870000e-34 156.0
19 TraesCS1D01G270500 chr5A 75.145 173 32 9 151 314 634076278 634076448 2.930000e-08 71.3
20 TraesCS1D01G270500 chr7D 93.033 244 16 1 2768 3011 414290214 414289972 7.230000e-94 355.0
21 TraesCS1D01G270500 chr7D 85.714 63 7 2 2267 2328 627356213 627356152 1.360000e-06 65.8
22 TraesCS1D01G270500 chr6D 93.033 244 16 1 2768 3011 468640015 468640257 7.230000e-94 355.0
23 TraesCS1D01G270500 chr6D 85.804 317 45 0 1953 2269 427476742 427476426 2.620000e-88 337.0
24 TraesCS1D01G270500 chr6D 85.441 261 25 8 2 260 56836994 56837243 5.830000e-65 259.0
25 TraesCS1D01G270500 chr6D 82.566 304 41 10 2375 2675 427476429 427476135 2.100000e-64 257.0
26 TraesCS1D01G270500 chr6D 90.323 62 6 0 2267 2328 383747912 383747851 1.350000e-11 82.4
27 TraesCS1D01G270500 chr5D 93.033 244 16 1 2768 3011 267805712 267805954 7.230000e-94 355.0
28 TraesCS1D01G270500 chr5D 84.190 253 37 3 1 251 526583299 526583550 5.870000e-60 243.0
29 TraesCS1D01G270500 chr5D 98.039 51 1 0 2326 2376 428475273 428475323 8.100000e-14 89.8
30 TraesCS1D01G270500 chr3D 93.033 244 16 1 2768 3011 502142322 502142080 7.230000e-94 355.0
31 TraesCS1D01G270500 chr3D 86.854 213 25 3 36 247 352393073 352392863 9.830000e-58 235.0
32 TraesCS1D01G270500 chr3D 81.569 255 34 10 1 248 92874699 92874947 1.290000e-46 198.0
33 TraesCS1D01G270500 chr3D 93.617 47 3 0 2331 2377 64193480 64193434 2.930000e-08 71.3
34 TraesCS1D01G270500 chr3D 87.273 55 3 3 2276 2328 513951732 513951680 6.350000e-05 60.2
35 TraesCS1D01G270500 chr2D 92.213 244 17 2 2768 3011 332504897 332504656 1.560000e-90 344.0
36 TraesCS1D01G270500 chr2D 87.805 164 17 3 2 164 70946452 70946613 7.760000e-44 189.0
37 TraesCS1D01G270500 chr2D 87.117 163 18 3 1 163 353022941 353022782 1.300000e-41 182.0
38 TraesCS1D01G270500 chr2D 89.908 109 9 2 144 251 8575290 8575397 7.930000e-29 139.0
39 TraesCS1D01G270500 chr2D 96.364 55 2 0 2326 2380 169042499 169042553 2.250000e-14 91.6
40 TraesCS1D01G270500 chr4B 83.912 317 49 2 1953 2269 395826770 395827084 9.550000e-78 302.0
41 TraesCS1D01G270500 chr4B 82.555 321 53 3 1953 2272 58050641 58050323 4.480000e-71 279.0
42 TraesCS1D01G270500 chr5B 82.965 317 52 2 1953 2269 505688636 505688322 9.620000e-73 285.0
43 TraesCS1D01G270500 chr5B 81.166 223 33 8 36 252 460219517 460219736 2.810000e-38 171.0
44 TraesCS1D01G270500 chr5B 96.875 32 0 1 281 312 487733062 487733032 1.100000e-02 52.8
45 TraesCS1D01G270500 chr7B 82.650 317 53 2 1953 2269 51592141 51591827 4.480000e-71 279.0
46 TraesCS1D01G270500 chr7B 82.650 317 52 3 1953 2269 51618172 51617859 1.610000e-70 278.0
47 TraesCS1D01G270500 chr7B 83.471 121 20 0 1953 2073 17250957 17250837 4.800000e-21 113.0
48 TraesCS1D01G270500 chr7B 88.710 62 7 0 2267 2328 668204571 668204632 6.300000e-10 76.8
49 TraesCS1D01G270500 chr2A 82.237 304 41 11 2375 2675 17786652 17786359 3.510000e-62 250.0
50 TraesCS1D01G270500 chr2A 82.110 218 31 4 36 251 698131080 698130869 4.670000e-41 180.0
51 TraesCS1D01G270500 chr2A 91.667 108 9 0 3546 3653 756874435 756874542 3.660000e-32 150.0
52 TraesCS1D01G270500 chr2A 90.741 108 10 0 3546 3653 436006016 436006123 1.700000e-30 145.0
53 TraesCS1D01G270500 chr3A 92.793 111 8 0 3546 3656 750526174 750526064 1.690000e-35 161.0
54 TraesCS1D01G270500 chr3A 93.939 99 6 0 3558 3656 129618287 129618189 3.660000e-32 150.0
55 TraesCS1D01G270500 chr3A 85.484 62 8 1 2268 2328 722355832 722355893 4.910000e-06 63.9
56 TraesCS1D01G270500 chr2B 91.892 111 9 0 3546 3656 104010783 104010673 7.870000e-34 156.0
57 TraesCS1D01G270500 chr6B 91.667 108 9 0 3546 3653 157905712 157905819 3.660000e-32 150.0
58 TraesCS1D01G270500 chr6B 91.935 62 5 0 2267 2328 574023851 574023790 2.910000e-13 87.9
59 TraesCS1D01G270500 chr6B 90.323 62 4 2 2318 2379 548118962 548118903 4.870000e-11 80.5
60 TraesCS1D01G270500 chr6B 95.652 46 2 0 2331 2376 44247239 44247284 2.270000e-09 75.0
61 TraesCS1D01G270500 chr7A 87.387 111 12 2 2268 2377 537642224 537642115 6.170000e-25 126.0
62 TraesCS1D01G270500 chr3B 93.617 47 3 0 2331 2377 445237966 445238012 2.930000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G270500 chr1D 365435461 365441325 5864 True 10831.0 10831 100.0000 1 5865 1 chr1D.!!$R1 5864
1 TraesCS1D01G270500 chr1A 464248929 464254237 5308 True 1571.2 3906 93.1202 581 5865 5 chr1A.!!$R3 5284
2 TraesCS1D01G270500 chr1B 488819452 488825163 5711 True 1641.2 2503 94.1982 432 5865 5 chr1B.!!$R2 5433
3 TraesCS1D01G270500 chr6D 427476135 427476742 607 True 297.0 337 84.1850 1953 2675 2 chr6D.!!$R2 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.034059 GATATGAGGGTGCCGGTCAG 59.966 60.000 1.90 0.00 0.00 3.51 F
304 305 0.037326 TTTGAGGCGCCTGACTGTAG 60.037 55.000 38.41 0.00 28.75 2.74 F
368 369 0.103208 GTCAAGATGGGATCGACGCT 59.897 55.000 0.00 0.00 0.00 5.07 F
369 370 0.385751 TCAAGATGGGATCGACGCTC 59.614 55.000 0.00 0.00 0.00 5.03 F
1779 1999 0.455815 CCAGCCGGGTTAGCAAAATC 59.544 55.000 1.64 0.00 0.00 2.17 F
1813 2033 0.759959 TCCAGTTTTACCAGCCGTCA 59.240 50.000 0.00 0.00 0.00 4.35 F
2829 3256 0.995024 ATCCCTGCAGGTTACAAGCT 59.005 50.000 30.63 3.41 37.19 3.74 F
4750 5305 1.076777 CCCCGGAGATGCATTTGGT 60.077 57.895 0.73 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2014 0.759959 TGACGGCTGGTAAAACTGGA 59.240 50.000 0.00 0.0 0.00 3.86 R
1904 2168 1.021202 GCCTGGGCCAAAAACAAAAC 58.979 50.000 8.04 0.0 34.56 2.43 R
2361 2625 1.536940 GCTAGTACTCCCTCCGATCC 58.463 60.000 0.00 0.0 0.00 3.36 R
2407 2671 5.683876 ATGAGTACAGGATAAGCACTTGT 57.316 39.130 0.00 0.0 0.00 3.16 R
3087 3514 0.036022 AGGCAAGTGACTCTGGCTTC 59.964 55.000 14.60 0.0 42.46 3.86 R
3281 3708 3.944055 ATAGTGAAGAACTGCTGACGT 57.056 42.857 0.00 0.0 40.26 4.34 R
4783 5338 0.790207 ATTGTAGCGTTGACAGTGCG 59.210 50.000 0.00 0.0 0.00 5.34 R
5780 6383 0.460987 CAGAGGAGGACAACCGATGC 60.461 60.000 0.00 0.0 41.83 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.507009 CGGTCCGACGGAGGAGAC 61.507 72.222 18.98 5.37 41.68 3.36
60 61 3.507009 GGTCCGACGGAGGAGACG 61.507 72.222 18.98 0.00 41.68 4.18
61 62 2.435586 GTCCGACGGAGGAGACGA 60.436 66.667 18.98 0.00 41.68 4.20
62 63 2.125229 TCCGACGGAGGAGACGAG 60.125 66.667 13.88 0.00 34.92 4.18
63 64 2.436292 CCGACGGAGGAGACGAGT 60.436 66.667 8.64 0.00 34.93 4.18
64 65 2.039405 CCGACGGAGGAGACGAGTT 61.039 63.158 8.64 0.00 34.93 3.01
65 66 1.584380 CCGACGGAGGAGACGAGTTT 61.584 60.000 8.64 0.00 34.93 2.66
66 67 0.179194 CGACGGAGGAGACGAGTTTC 60.179 60.000 0.00 0.00 34.93 2.78
67 68 0.179194 GACGGAGGAGACGAGTTTCG 60.179 60.000 0.00 0.00 46.93 3.46
68 69 1.136984 CGGAGGAGACGAGTTTCGG 59.863 63.158 3.37 0.00 45.59 4.30
69 70 1.303799 CGGAGGAGACGAGTTTCGGA 61.304 60.000 3.37 0.00 45.59 4.55
70 71 0.170784 GGAGGAGACGAGTTTCGGAC 59.829 60.000 3.37 0.00 45.59 4.79
71 72 0.170784 GAGGAGACGAGTTTCGGACC 59.829 60.000 3.37 3.67 45.59 4.46
72 73 1.154073 GGAGACGAGTTTCGGACCG 60.154 63.158 7.84 7.84 45.59 4.79
73 74 1.578423 GAGACGAGTTTCGGACCGT 59.422 57.895 14.79 0.00 45.59 4.83
74 75 0.039708 GAGACGAGTTTCGGACCGTT 60.040 55.000 14.79 0.00 45.59 4.44
75 76 0.318445 AGACGAGTTTCGGACCGTTG 60.318 55.000 14.79 0.48 45.59 4.10
76 77 1.280206 GACGAGTTTCGGACCGTTGG 61.280 60.000 14.79 2.72 45.59 3.77
77 78 2.025418 CGAGTTTCGGACCGTTGGG 61.025 63.158 14.79 0.00 36.00 4.12
87 88 3.270000 CCGTTGGGTTTTAGGGCG 58.730 61.111 0.00 0.00 0.00 6.13
88 89 1.601477 CCGTTGGGTTTTAGGGCGT 60.601 57.895 0.00 0.00 0.00 5.68
89 90 1.174078 CCGTTGGGTTTTAGGGCGTT 61.174 55.000 0.00 0.00 0.00 4.84
90 91 0.669619 CGTTGGGTTTTAGGGCGTTT 59.330 50.000 0.00 0.00 0.00 3.60
91 92 1.067364 CGTTGGGTTTTAGGGCGTTTT 59.933 47.619 0.00 0.00 0.00 2.43
92 93 2.746269 GTTGGGTTTTAGGGCGTTTTC 58.254 47.619 0.00 0.00 0.00 2.29
94 95 0.241749 GGGTTTTAGGGCGTTTTCGG 59.758 55.000 0.00 0.00 44.29 4.30
102 103 3.733960 GCGTTTTCGGCTGGGACC 61.734 66.667 0.00 0.00 44.29 4.46
103 104 3.053896 CGTTTTCGGCTGGGACCC 61.054 66.667 2.45 2.45 39.94 4.46
104 105 2.675423 GTTTTCGGCTGGGACCCC 60.675 66.667 8.45 2.69 0.00 4.95
105 106 2.856988 TTTTCGGCTGGGACCCCT 60.857 61.111 8.45 0.00 36.94 4.79
106 107 2.466186 TTTTCGGCTGGGACCCCTT 61.466 57.895 8.45 0.00 36.94 3.95
107 108 2.014033 TTTTCGGCTGGGACCCCTTT 62.014 55.000 8.45 0.00 36.94 3.11
108 109 2.706952 TTTCGGCTGGGACCCCTTTG 62.707 60.000 8.45 0.00 36.94 2.77
109 110 3.966543 CGGCTGGGACCCCTTTGT 61.967 66.667 8.45 0.00 36.94 2.83
110 111 2.035783 GGCTGGGACCCCTTTGTC 59.964 66.667 8.45 0.00 36.94 3.18
111 112 2.840753 GGCTGGGACCCCTTTGTCA 61.841 63.158 8.45 0.00 36.97 3.58
112 113 1.303643 GCTGGGACCCCTTTGTCAG 60.304 63.158 8.45 0.00 36.97 3.51
113 114 2.069165 GCTGGGACCCCTTTGTCAGT 62.069 60.000 8.45 0.00 36.97 3.41
114 115 0.036875 CTGGGACCCCTTTGTCAGTC 59.963 60.000 8.45 0.00 36.97 3.51
115 116 1.379146 GGGACCCCTTTGTCAGTCC 59.621 63.158 0.00 0.00 46.65 3.85
116 117 1.003718 GGACCCCTTTGTCAGTCCG 60.004 63.158 0.00 0.00 39.47 4.79
117 118 1.477685 GGACCCCTTTGTCAGTCCGA 61.478 60.000 0.00 0.00 39.47 4.55
118 119 0.320508 GACCCCTTTGTCAGTCCGAC 60.321 60.000 0.00 0.00 45.61 4.79
125 126 2.430921 GTCAGTCCGACGTGGCAG 60.431 66.667 0.00 0.00 37.80 4.85
126 127 3.680786 TCAGTCCGACGTGGCAGG 61.681 66.667 5.50 5.50 37.80 4.85
127 128 3.991051 CAGTCCGACGTGGCAGGT 61.991 66.667 13.36 13.36 37.80 4.00
128 129 3.991051 AGTCCGACGTGGCAGGTG 61.991 66.667 18.66 9.79 37.80 4.00
129 130 4.295119 GTCCGACGTGGCAGGTGT 62.295 66.667 18.66 1.57 37.80 4.16
130 131 4.293648 TCCGACGTGGCAGGTGTG 62.294 66.667 18.66 9.66 37.80 3.82
162 163 4.660938 GGCGCCCCCATATCCACC 62.661 72.222 18.11 0.00 0.00 4.61
163 164 4.660938 GCGCCCCCATATCCACCC 62.661 72.222 0.00 0.00 0.00 4.61
164 165 3.174987 CGCCCCCATATCCACCCA 61.175 66.667 0.00 0.00 0.00 4.51
165 166 2.762554 CGCCCCCATATCCACCCAA 61.763 63.158 0.00 0.00 0.00 4.12
166 167 1.860696 GCCCCCATATCCACCCAAT 59.139 57.895 0.00 0.00 0.00 3.16
167 168 1.080638 GCCCCCATATCCACCCAATA 58.919 55.000 0.00 0.00 0.00 1.90
168 169 1.645919 GCCCCCATATCCACCCAATAT 59.354 52.381 0.00 0.00 0.00 1.28
169 170 2.044353 GCCCCCATATCCACCCAATATT 59.956 50.000 0.00 0.00 0.00 1.28
170 171 3.503970 GCCCCCATATCCACCCAATATTT 60.504 47.826 0.00 0.00 0.00 1.40
171 172 4.095946 CCCCCATATCCACCCAATATTTG 58.904 47.826 0.00 0.00 0.00 2.32
184 185 5.909621 CCAATATTTGGCTGGATATGAGG 57.090 43.478 0.00 0.00 45.17 3.86
185 186 4.708421 CCAATATTTGGCTGGATATGAGGG 59.292 45.833 0.00 0.00 45.17 4.30
186 187 5.327732 CAATATTTGGCTGGATATGAGGGT 58.672 41.667 0.00 0.00 0.00 4.34
187 188 2.734755 TTTGGCTGGATATGAGGGTG 57.265 50.000 0.00 0.00 0.00 4.61
188 189 0.183492 TTGGCTGGATATGAGGGTGC 59.817 55.000 0.00 0.00 0.00 5.01
189 190 1.073897 GGCTGGATATGAGGGTGCC 59.926 63.158 0.00 0.00 0.00 5.01
190 191 1.302033 GCTGGATATGAGGGTGCCG 60.302 63.158 0.00 0.00 0.00 5.69
191 192 1.372683 CTGGATATGAGGGTGCCGG 59.627 63.158 0.00 0.00 0.00 6.13
192 193 1.383943 TGGATATGAGGGTGCCGGT 60.384 57.895 1.90 0.00 0.00 5.28
193 194 1.371558 GGATATGAGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
194 195 1.407656 GGATATGAGGGTGCCGGTCA 61.408 60.000 1.90 0.00 0.00 4.02
195 196 0.034059 GATATGAGGGTGCCGGTCAG 59.966 60.000 1.90 0.00 0.00 3.51
196 197 2.044806 ATATGAGGGTGCCGGTCAGC 62.045 60.000 16.53 16.53 42.24 4.26
207 208 4.481112 GGTCAGCGCGGGCATTTG 62.481 66.667 27.20 16.07 43.41 2.32
208 209 3.430862 GTCAGCGCGGGCATTTGA 61.431 61.111 27.20 18.18 43.41 2.69
209 210 3.126879 TCAGCGCGGGCATTTGAG 61.127 61.111 27.20 8.73 43.41 3.02
210 211 4.183686 CAGCGCGGGCATTTGAGG 62.184 66.667 27.20 2.90 43.41 3.86
220 221 2.358939 GCATTTGAGGCCTGTTTGAG 57.641 50.000 12.00 0.00 0.00 3.02
221 222 1.067354 GCATTTGAGGCCTGTTTGAGG 60.067 52.381 12.00 0.00 46.13 3.86
228 229 2.030562 CCTGTTTGAGGCGTCCGT 59.969 61.111 3.56 0.00 34.01 4.69
229 230 2.027625 CCTGTTTGAGGCGTCCGTC 61.028 63.158 3.56 0.00 34.01 4.79
230 231 1.006102 CTGTTTGAGGCGTCCGTCT 60.006 57.895 3.56 0.00 0.00 4.18
231 232 1.284982 CTGTTTGAGGCGTCCGTCTG 61.285 60.000 0.00 0.00 0.00 3.51
232 233 2.027625 GTTTGAGGCGTCCGTCTGG 61.028 63.158 0.00 0.00 0.00 3.86
233 234 2.204461 TTTGAGGCGTCCGTCTGGA 61.204 57.895 0.00 0.00 43.88 3.86
245 246 3.670625 TCCGTCTGGATTGAAAAATCGT 58.329 40.909 0.00 0.00 40.17 3.73
246 247 3.435327 TCCGTCTGGATTGAAAAATCGTG 59.565 43.478 0.00 0.00 40.17 4.35
247 248 3.435327 CCGTCTGGATTGAAAAATCGTGA 59.565 43.478 0.00 0.00 37.49 4.35
248 249 4.394795 CGTCTGGATTGAAAAATCGTGAC 58.605 43.478 10.05 10.05 33.19 3.67
249 250 4.669197 CGTCTGGATTGAAAAATCGTGACC 60.669 45.833 12.50 0.00 33.06 4.02
250 251 3.435327 TCTGGATTGAAAAATCGTGACCG 59.565 43.478 0.00 0.00 0.00 4.79
260 261 1.500396 TCGTGACCGATCAGTGACG 59.500 57.895 13.97 13.97 46.77 4.35
261 262 2.152699 CGTGACCGATCAGTGACGC 61.153 63.158 8.12 0.00 40.32 5.19
262 263 1.805945 GTGACCGATCAGTGACGCC 60.806 63.158 0.00 0.00 34.75 5.68
263 264 2.202756 GACCGATCAGTGACGCCC 60.203 66.667 0.00 0.00 0.00 6.13
264 265 4.129737 ACCGATCAGTGACGCCCG 62.130 66.667 0.00 0.00 0.00 6.13
265 266 3.822192 CCGATCAGTGACGCCCGA 61.822 66.667 0.00 0.00 0.00 5.14
266 267 2.579787 CGATCAGTGACGCCCGAC 60.580 66.667 0.00 0.00 0.00 4.79
267 268 2.885861 GATCAGTGACGCCCGACT 59.114 61.111 0.00 0.00 0.00 4.18
268 269 1.517257 GATCAGTGACGCCCGACTG 60.517 63.158 0.00 0.00 40.89 3.51
269 270 2.214181 GATCAGTGACGCCCGACTGT 62.214 60.000 0.00 0.00 40.48 3.55
270 271 0.963856 ATCAGTGACGCCCGACTGTA 60.964 55.000 0.00 0.00 40.48 2.74
271 272 1.154016 CAGTGACGCCCGACTGTAG 60.154 63.158 0.00 0.00 35.78 2.74
272 273 1.303074 AGTGACGCCCGACTGTAGA 60.303 57.895 0.00 0.00 0.00 2.59
273 274 0.892358 AGTGACGCCCGACTGTAGAA 60.892 55.000 0.00 0.00 0.00 2.10
274 275 0.456312 GTGACGCCCGACTGTAGAAG 60.456 60.000 0.00 0.00 0.00 2.85
275 276 0.607217 TGACGCCCGACTGTAGAAGA 60.607 55.000 0.00 0.00 0.00 2.87
276 277 0.099082 GACGCCCGACTGTAGAAGAG 59.901 60.000 0.00 0.00 0.00 2.85
277 278 1.313812 ACGCCCGACTGTAGAAGAGG 61.314 60.000 0.00 0.00 0.00 3.69
278 279 1.817209 GCCCGACTGTAGAAGAGGG 59.183 63.158 6.38 6.38 44.71 4.30
279 280 0.683504 GCCCGACTGTAGAAGAGGGA 60.684 60.000 12.48 0.00 44.70 4.20
280 281 1.394618 CCCGACTGTAGAAGAGGGAG 58.605 60.000 5.22 0.00 44.70 4.30
281 282 1.394618 CCGACTGTAGAAGAGGGAGG 58.605 60.000 0.00 0.00 0.00 4.30
282 283 1.064611 CCGACTGTAGAAGAGGGAGGA 60.065 57.143 0.00 0.00 0.00 3.71
283 284 2.294074 CGACTGTAGAAGAGGGAGGAG 58.706 57.143 0.00 0.00 0.00 3.69
284 285 2.661718 GACTGTAGAAGAGGGAGGAGG 58.338 57.143 0.00 0.00 0.00 4.30
285 286 2.004589 ACTGTAGAAGAGGGAGGAGGT 58.995 52.381 0.00 0.00 0.00 3.85
286 287 2.384029 ACTGTAGAAGAGGGAGGAGGTT 59.616 50.000 0.00 0.00 0.00 3.50
287 288 3.181405 ACTGTAGAAGAGGGAGGAGGTTT 60.181 47.826 0.00 0.00 0.00 3.27
288 289 3.173965 TGTAGAAGAGGGAGGAGGTTTG 58.826 50.000 0.00 0.00 0.00 2.93
289 290 2.723530 AGAAGAGGGAGGAGGTTTGA 57.276 50.000 0.00 0.00 0.00 2.69
290 291 2.545810 AGAAGAGGGAGGAGGTTTGAG 58.454 52.381 0.00 0.00 0.00 3.02
291 292 1.557371 GAAGAGGGAGGAGGTTTGAGG 59.443 57.143 0.00 0.00 0.00 3.86
292 293 0.912006 AGAGGGAGGAGGTTTGAGGC 60.912 60.000 0.00 0.00 0.00 4.70
293 294 2.245438 GAGGGAGGAGGTTTGAGGCG 62.245 65.000 0.00 0.00 0.00 5.52
294 295 2.436824 GGAGGAGGTTTGAGGCGC 60.437 66.667 0.00 0.00 0.00 6.53
295 296 2.436824 GAGGAGGTTTGAGGCGCC 60.437 66.667 21.89 21.89 0.00 6.53
296 297 2.930562 AGGAGGTTTGAGGCGCCT 60.931 61.111 33.48 33.48 34.93 5.52
297 298 2.747855 GGAGGTTTGAGGCGCCTG 60.748 66.667 38.41 0.00 31.89 4.85
298 299 2.347490 GAGGTTTGAGGCGCCTGA 59.653 61.111 38.41 26.55 31.89 3.86
299 300 2.032681 AGGTTTGAGGCGCCTGAC 59.967 61.111 38.41 27.28 0.00 3.51
300 301 2.032681 GGTTTGAGGCGCCTGACT 59.967 61.111 38.41 10.61 34.58 3.41
301 302 2.328099 GGTTTGAGGCGCCTGACTG 61.328 63.158 38.41 0.00 28.75 3.51
302 303 1.598130 GTTTGAGGCGCCTGACTGT 60.598 57.895 38.41 9.08 28.75 3.55
303 304 0.320421 GTTTGAGGCGCCTGACTGTA 60.320 55.000 38.41 7.49 28.75 2.74
304 305 0.037326 TTTGAGGCGCCTGACTGTAG 60.037 55.000 38.41 0.00 28.75 2.74
305 306 0.898326 TTGAGGCGCCTGACTGTAGA 60.898 55.000 38.41 6.03 28.75 2.59
306 307 0.684479 TGAGGCGCCTGACTGTAGAT 60.684 55.000 38.41 5.11 28.75 1.98
307 308 0.249238 GAGGCGCCTGACTGTAGATG 60.249 60.000 38.41 0.00 28.75 2.90
308 309 1.884926 GGCGCCTGACTGTAGATGC 60.885 63.158 22.15 0.00 0.00 3.91
309 310 1.142748 GCGCCTGACTGTAGATGCT 59.857 57.895 0.00 0.00 0.00 3.79
310 311 0.873743 GCGCCTGACTGTAGATGCTC 60.874 60.000 0.00 0.00 0.00 4.26
311 312 0.743688 CGCCTGACTGTAGATGCTCT 59.256 55.000 0.00 0.00 0.00 4.09
312 313 1.135915 CGCCTGACTGTAGATGCTCTT 59.864 52.381 0.00 0.00 0.00 2.85
313 314 2.359214 CGCCTGACTGTAGATGCTCTTA 59.641 50.000 0.00 0.00 0.00 2.10
314 315 3.712187 GCCTGACTGTAGATGCTCTTAC 58.288 50.000 0.00 0.00 0.00 2.34
315 316 3.793801 GCCTGACTGTAGATGCTCTTACG 60.794 52.174 0.00 0.00 0.00 3.18
316 317 3.628032 CCTGACTGTAGATGCTCTTACGA 59.372 47.826 0.00 0.00 0.00 3.43
317 318 4.496673 CCTGACTGTAGATGCTCTTACGAC 60.497 50.000 0.00 0.00 0.00 4.34
318 319 4.262617 TGACTGTAGATGCTCTTACGACT 58.737 43.478 0.00 0.00 0.00 4.18
319 320 5.425630 TGACTGTAGATGCTCTTACGACTA 58.574 41.667 0.00 0.00 0.00 2.59
320 321 5.293814 TGACTGTAGATGCTCTTACGACTAC 59.706 44.000 0.00 0.00 0.00 2.73
321 322 5.183969 ACTGTAGATGCTCTTACGACTACA 58.816 41.667 0.00 0.00 38.12 2.74
322 323 5.823570 ACTGTAGATGCTCTTACGACTACAT 59.176 40.000 0.00 0.00 39.15 2.29
323 324 6.017770 ACTGTAGATGCTCTTACGACTACATC 60.018 42.308 0.00 0.00 39.15 3.06
331 332 2.278596 CGACTACATCGTGGGCCG 60.279 66.667 0.00 0.00 46.25 6.13
332 333 2.585247 GACTACATCGTGGGCCGC 60.585 66.667 7.12 7.12 36.19 6.53
333 334 3.365291 GACTACATCGTGGGCCGCA 62.365 63.158 18.64 4.74 36.19 5.69
334 335 2.125310 CTACATCGTGGGCCGCAA 60.125 61.111 18.64 0.00 36.19 4.85
335 336 2.435234 TACATCGTGGGCCGCAAC 60.435 61.111 18.64 0.00 36.19 4.17
336 337 3.241515 TACATCGTGGGCCGCAACA 62.242 57.895 18.64 0.00 36.19 3.33
337 338 2.529454 TACATCGTGGGCCGCAACAT 62.529 55.000 18.64 2.49 36.19 2.71
338 339 3.133464 ATCGTGGGCCGCAACATG 61.133 61.111 18.64 0.00 36.19 3.21
339 340 3.620419 ATCGTGGGCCGCAACATGA 62.620 57.895 18.64 5.97 37.07 3.07
340 341 3.803082 CGTGGGCCGCAACATGAG 61.803 66.667 18.64 0.00 0.00 2.90
341 342 2.672996 GTGGGCCGCAACATGAGT 60.673 61.111 13.30 0.00 0.00 3.41
342 343 2.115052 TGGGCCGCAACATGAGTT 59.885 55.556 0.00 0.00 38.88 3.01
343 344 1.971167 TGGGCCGCAACATGAGTTC 60.971 57.895 0.00 0.00 35.28 3.01
344 345 1.675641 GGGCCGCAACATGAGTTCT 60.676 57.895 0.00 0.00 35.28 3.01
345 346 1.244019 GGGCCGCAACATGAGTTCTT 61.244 55.000 0.00 0.00 35.28 2.52
346 347 0.109597 GGCCGCAACATGAGTTCTTG 60.110 55.000 0.00 0.00 35.28 3.02
347 348 0.109597 GCCGCAACATGAGTTCTTGG 60.110 55.000 0.00 0.00 35.28 3.61
348 349 0.109597 CCGCAACATGAGTTCTTGGC 60.110 55.000 0.00 0.00 35.28 4.52
349 350 0.453282 CGCAACATGAGTTCTTGGCG 60.453 55.000 0.00 0.00 39.12 5.69
350 351 0.593128 GCAACATGAGTTCTTGGCGT 59.407 50.000 0.00 0.00 35.28 5.68
351 352 1.400242 GCAACATGAGTTCTTGGCGTC 60.400 52.381 0.00 0.00 35.28 5.19
352 353 1.872952 CAACATGAGTTCTTGGCGTCA 59.127 47.619 0.00 0.00 35.28 4.35
353 354 2.254546 ACATGAGTTCTTGGCGTCAA 57.745 45.000 0.91 0.91 0.00 3.18
362 363 3.476740 TTGGCGTCAAGATGGGATC 57.523 52.632 0.00 0.00 0.00 3.36
363 364 0.461870 TTGGCGTCAAGATGGGATCG 60.462 55.000 0.00 0.00 0.00 3.69
364 365 1.326951 TGGCGTCAAGATGGGATCGA 61.327 55.000 0.00 0.00 0.00 3.59
365 366 0.876342 GGCGTCAAGATGGGATCGAC 60.876 60.000 0.00 0.00 0.00 4.20
366 367 2.873367 CGTCAAGATGGGATCGACG 58.127 57.895 0.00 0.00 42.79 5.12
367 368 1.209275 CGTCAAGATGGGATCGACGC 61.209 60.000 4.52 0.00 42.35 5.19
368 369 0.103208 GTCAAGATGGGATCGACGCT 59.897 55.000 0.00 0.00 0.00 5.07
369 370 0.385751 TCAAGATGGGATCGACGCTC 59.614 55.000 0.00 0.00 0.00 5.03
370 371 0.598680 CAAGATGGGATCGACGCTCC 60.599 60.000 9.26 9.26 0.00 4.70
371 372 0.757188 AAGATGGGATCGACGCTCCT 60.757 55.000 16.69 0.00 33.05 3.69
372 373 1.006805 GATGGGATCGACGCTCCTG 60.007 63.158 16.69 0.00 33.05 3.86
373 374 1.739338 GATGGGATCGACGCTCCTGT 61.739 60.000 16.69 6.43 33.05 4.00
374 375 1.330655 ATGGGATCGACGCTCCTGTT 61.331 55.000 16.69 0.52 33.05 3.16
375 376 1.519455 GGGATCGACGCTCCTGTTG 60.519 63.158 16.69 0.00 33.05 3.33
376 377 1.511305 GGATCGACGCTCCTGTTGA 59.489 57.895 10.46 0.00 36.71 3.18
377 378 0.526524 GGATCGACGCTCCTGTTGAG 60.527 60.000 10.46 0.00 44.47 3.02
388 389 3.571590 CTCCTGTTGAGCCTACCTATCT 58.428 50.000 0.00 0.00 33.47 1.98
389 390 3.300388 TCCTGTTGAGCCTACCTATCTG 58.700 50.000 0.00 0.00 0.00 2.90
390 391 3.034635 CCTGTTGAGCCTACCTATCTGT 58.965 50.000 0.00 0.00 0.00 3.41
391 392 3.068873 CCTGTTGAGCCTACCTATCTGTC 59.931 52.174 0.00 0.00 0.00 3.51
392 393 3.701542 CTGTTGAGCCTACCTATCTGTCA 59.298 47.826 0.00 0.00 0.00 3.58
393 394 4.290093 TGTTGAGCCTACCTATCTGTCAT 58.710 43.478 0.00 0.00 0.00 3.06
394 395 4.716784 TGTTGAGCCTACCTATCTGTCATT 59.283 41.667 0.00 0.00 0.00 2.57
395 396 5.189736 TGTTGAGCCTACCTATCTGTCATTT 59.810 40.000 0.00 0.00 0.00 2.32
396 397 5.537300 TGAGCCTACCTATCTGTCATTTC 57.463 43.478 0.00 0.00 0.00 2.17
397 398 5.211973 TGAGCCTACCTATCTGTCATTTCT 58.788 41.667 0.00 0.00 0.00 2.52
398 399 6.373759 TGAGCCTACCTATCTGTCATTTCTA 58.626 40.000 0.00 0.00 0.00 2.10
399 400 6.491745 TGAGCCTACCTATCTGTCATTTCTAG 59.508 42.308 0.00 0.00 0.00 2.43
400 401 6.377912 AGCCTACCTATCTGTCATTTCTAGT 58.622 40.000 0.00 0.00 0.00 2.57
401 402 6.492087 AGCCTACCTATCTGTCATTTCTAGTC 59.508 42.308 0.00 0.00 0.00 2.59
402 403 6.492087 GCCTACCTATCTGTCATTTCTAGTCT 59.508 42.308 0.00 0.00 0.00 3.24
403 404 7.523052 GCCTACCTATCTGTCATTTCTAGTCTG 60.523 44.444 0.00 0.00 0.00 3.51
404 405 7.721842 CCTACCTATCTGTCATTTCTAGTCTGA 59.278 40.741 0.00 0.00 0.00 3.27
405 406 7.962995 ACCTATCTGTCATTTCTAGTCTGAA 57.037 36.000 0.00 0.00 0.00 3.02
406 407 8.546083 ACCTATCTGTCATTTCTAGTCTGAAT 57.454 34.615 0.00 0.00 0.00 2.57
407 408 8.986991 ACCTATCTGTCATTTCTAGTCTGAATT 58.013 33.333 0.00 0.00 0.00 2.17
408 409 9.829507 CCTATCTGTCATTTCTAGTCTGAATTT 57.170 33.333 0.00 0.00 0.00 1.82
442 443 4.392921 TTTTCGGGTGCTGAATTTTTGA 57.607 36.364 0.00 0.00 0.00 2.69
443 444 4.392921 TTTCGGGTGCTGAATTTTTGAA 57.607 36.364 0.00 0.00 0.00 2.69
444 445 4.392921 TTCGGGTGCTGAATTTTTGAAA 57.607 36.364 0.00 0.00 0.00 2.69
445 446 3.712187 TCGGGTGCTGAATTTTTGAAAC 58.288 40.909 0.00 0.00 0.00 2.78
446 447 2.799978 CGGGTGCTGAATTTTTGAAACC 59.200 45.455 0.00 0.00 0.00 3.27
449 450 4.442753 GGGTGCTGAATTTTTGAAACCTGA 60.443 41.667 0.00 0.00 0.00 3.86
466 467 3.454812 ACCTGAGGTACATATGAACCCAC 59.545 47.826 10.38 5.31 36.34 4.61
469 470 5.353394 TGAGGTACATATGAACCCACTTC 57.647 43.478 10.38 5.72 36.34 3.01
473 474 5.602978 AGGTACATATGAACCCACTTCTAGG 59.397 44.000 10.38 0.00 36.34 3.02
476 477 4.099573 ACATATGAACCCACTTCTAGGACG 59.900 45.833 10.38 0.00 0.00 4.79
521 522 9.738832 GTAAGTTTACCTTTTGCAAATAGTTCA 57.261 29.630 13.65 0.00 34.46 3.18
530 531 8.034215 CCTTTTGCAAATAGTTCATGTATTGGA 58.966 33.333 13.65 0.00 0.00 3.53
550 551 4.712829 TGGATAGAAACTCACCCATTACGA 59.287 41.667 0.00 0.00 0.00 3.43
626 627 7.439157 TCCACATTTTCTCATCTTTACACAG 57.561 36.000 0.00 0.00 0.00 3.66
647 648 7.046652 CACAGGTCAGAAATGATCATAGTCTT 58.953 38.462 9.04 0.00 0.00 3.01
648 649 7.551974 CACAGGTCAGAAATGATCATAGTCTTT 59.448 37.037 9.04 0.00 0.00 2.52
649 650 8.762645 ACAGGTCAGAAATGATCATAGTCTTTA 58.237 33.333 9.04 3.38 0.00 1.85
731 737 7.481798 CCTAAGTTTTTGAAACTATGCACGATC 59.518 37.037 6.50 0.00 0.00 3.69
772 779 9.887406 TTGAAACTTAGAAATACGATTTTCACC 57.113 29.630 14.19 0.00 37.93 4.02
774 781 9.887406 GAAACTTAGAAATACGATTTTCACCAA 57.113 29.630 14.19 6.85 37.93 3.67
796 803 5.582689 AATTCCGAAAGTGAATTCATCCC 57.417 39.130 12.12 0.00 36.77 3.85
876 885 4.047059 CAGCCAACCCAAGCAGCG 62.047 66.667 0.00 0.00 0.00 5.18
997 1195 2.880890 CAGCAAGGTAAACAGACAGCTT 59.119 45.455 0.00 0.00 32.93 3.74
1103 1301 0.618968 GGCTCCCTCTCCTTCTCCAA 60.619 60.000 0.00 0.00 0.00 3.53
1199 1397 3.254166 TGATTTTGCTTGCTTCTCTGGTC 59.746 43.478 0.00 0.00 0.00 4.02
1421 1625 3.934391 GAGGTGACCGCCGTCCTTG 62.934 68.421 0.00 0.00 38.32 3.61
1422 1626 4.309950 GGTGACCGCCGTCCTTGT 62.310 66.667 2.66 0.00 38.32 3.16
1423 1627 3.041940 GTGACCGCCGTCCTTGTG 61.042 66.667 2.66 0.00 38.32 3.33
1424 1628 3.542676 TGACCGCCGTCCTTGTGT 61.543 61.111 2.66 0.00 38.32 3.72
1425 1629 2.201708 TGACCGCCGTCCTTGTGTA 61.202 57.895 2.66 0.00 38.32 2.90
1426 1630 1.217244 GACCGCCGTCCTTGTGTAT 59.783 57.895 0.00 0.00 32.40 2.29
1462 1666 0.977627 GCAATGGAAAAGGGGGAGGG 60.978 60.000 0.00 0.00 0.00 4.30
1480 1684 4.019231 GGAGGGAATCAAGTAACTGTCCTT 60.019 45.833 0.00 0.00 0.00 3.36
1544 1753 1.262417 CATGACTTGGATCGCGAATGG 59.738 52.381 15.24 4.60 0.00 3.16
1588 1797 6.531594 TCAGATTAACTGTATTGAGCGACAAG 59.468 38.462 5.72 0.00 45.86 3.16
1621 1831 1.272212 TCGCTTCAAATTCCCCTTTGC 59.728 47.619 0.00 0.00 36.32 3.68
1768 1988 2.464157 TTTAAATTTTGCCAGCCGGG 57.536 45.000 2.18 0.00 40.85 5.73
1769 1989 1.343069 TTAAATTTTGCCAGCCGGGT 58.657 45.000 0.00 0.00 39.65 5.28
1779 1999 0.455815 CCAGCCGGGTTAGCAAAATC 59.544 55.000 1.64 0.00 0.00 2.17
1780 2000 1.463674 CAGCCGGGTTAGCAAAATCT 58.536 50.000 1.64 0.00 0.00 2.40
1781 2001 2.639065 CAGCCGGGTTAGCAAAATCTA 58.361 47.619 1.64 0.00 0.00 1.98
1782 2002 3.013921 CAGCCGGGTTAGCAAAATCTAA 58.986 45.455 1.64 0.00 0.00 2.10
1783 2003 3.632145 CAGCCGGGTTAGCAAAATCTAAT 59.368 43.478 1.64 0.00 31.92 1.73
1784 2004 3.632145 AGCCGGGTTAGCAAAATCTAATG 59.368 43.478 0.00 0.00 31.92 1.90
1785 2005 3.795488 GCCGGGTTAGCAAAATCTAATGC 60.795 47.826 2.18 0.00 42.87 3.56
1786 2006 3.380004 CCGGGTTAGCAAAATCTAATGCA 59.620 43.478 0.00 0.00 44.95 3.96
1787 2007 4.037923 CCGGGTTAGCAAAATCTAATGCAT 59.962 41.667 0.00 0.00 44.95 3.96
1788 2008 5.451798 CCGGGTTAGCAAAATCTAATGCATT 60.452 40.000 17.56 17.56 44.95 3.56
1789 2009 6.238897 CCGGGTTAGCAAAATCTAATGCATTA 60.239 38.462 17.94 17.94 44.95 1.90
1790 2010 7.370383 CGGGTTAGCAAAATCTAATGCATTAT 58.630 34.615 19.17 4.21 44.95 1.28
1791 2011 7.326789 CGGGTTAGCAAAATCTAATGCATTATG 59.673 37.037 19.17 14.63 44.95 1.90
1792 2012 8.359642 GGGTTAGCAAAATCTAATGCATTATGA 58.640 33.333 19.17 17.30 44.95 2.15
1793 2013 9.748708 GGTTAGCAAAATCTAATGCATTATGAA 57.251 29.630 19.17 8.85 44.95 2.57
1797 2017 8.644216 AGCAAAATCTAATGCATTATGAATCCA 58.356 29.630 19.17 0.00 44.95 3.41
1798 2018 8.922676 GCAAAATCTAATGCATTATGAATCCAG 58.077 33.333 19.17 7.36 42.12 3.86
1799 2019 9.976511 CAAAATCTAATGCATTATGAATCCAGT 57.023 29.630 19.17 1.79 0.00 4.00
1805 2025 9.683069 CTAATGCATTATGAATCCAGTTTTACC 57.317 33.333 19.17 0.00 0.00 2.85
1806 2026 7.658525 ATGCATTATGAATCCAGTTTTACCA 57.341 32.000 0.00 0.00 0.00 3.25
1807 2027 7.099266 TGCATTATGAATCCAGTTTTACCAG 57.901 36.000 0.00 0.00 0.00 4.00
1808 2028 5.979517 GCATTATGAATCCAGTTTTACCAGC 59.020 40.000 0.00 0.00 0.00 4.85
1809 2029 6.507023 CATTATGAATCCAGTTTTACCAGCC 58.493 40.000 0.00 0.00 0.00 4.85
1810 2030 2.432444 TGAATCCAGTTTTACCAGCCG 58.568 47.619 0.00 0.00 0.00 5.52
1811 2031 2.224670 TGAATCCAGTTTTACCAGCCGT 60.225 45.455 0.00 0.00 0.00 5.68
1812 2032 2.109425 ATCCAGTTTTACCAGCCGTC 57.891 50.000 0.00 0.00 0.00 4.79
1813 2033 0.759959 TCCAGTTTTACCAGCCGTCA 59.240 50.000 0.00 0.00 0.00 4.35
1814 2034 1.349688 TCCAGTTTTACCAGCCGTCAT 59.650 47.619 0.00 0.00 0.00 3.06
1815 2035 2.568062 TCCAGTTTTACCAGCCGTCATA 59.432 45.455 0.00 0.00 0.00 2.15
1816 2036 2.936498 CCAGTTTTACCAGCCGTCATAG 59.064 50.000 0.00 0.00 0.00 2.23
1817 2037 2.351726 CAGTTTTACCAGCCGTCATAGC 59.648 50.000 0.00 0.00 0.00 2.97
1818 2038 2.027561 AGTTTTACCAGCCGTCATAGCA 60.028 45.455 0.00 0.00 0.00 3.49
1819 2039 2.745281 GTTTTACCAGCCGTCATAGCAA 59.255 45.455 0.00 0.00 0.00 3.91
1820 2040 2.772077 TTACCAGCCGTCATAGCAAA 57.228 45.000 0.00 0.00 0.00 3.68
1821 2041 2.772077 TACCAGCCGTCATAGCAAAA 57.228 45.000 0.00 0.00 0.00 2.44
1822 2042 2.128771 ACCAGCCGTCATAGCAAAAT 57.871 45.000 0.00 0.00 0.00 1.82
1831 2095 5.276348 GCCGTCATAGCAAAATTTAATGCAC 60.276 40.000 15.37 5.61 44.95 4.57
1898 2162 6.825721 CCAGAGTAGTAAAATTGGATTCAGCT 59.174 38.462 0.00 0.00 0.00 4.24
1915 2179 9.489393 GGATTCAGCTTTTAAGTTTTGTTTTTG 57.511 29.630 0.00 0.00 0.00 2.44
2014 2278 3.415212 AGCTATCTGCAACAAGCTTCAA 58.585 40.909 9.83 0.00 42.52 2.69
2246 2510 4.154015 TCATCTCTGTACACCGCAATTTTG 59.846 41.667 0.00 0.00 0.00 2.44
2259 2523 6.692681 CACCGCAATTTTGTAGGAGAAATATG 59.307 38.462 11.86 0.00 34.08 1.78
2271 2535 6.380079 AGGAGAAATATGTTTCACACTCCT 57.620 37.500 16.15 15.03 44.92 3.69
2277 2541 3.703001 ATGTTTCACACTCCTTCCGAT 57.297 42.857 0.00 0.00 0.00 4.18
2278 2542 3.040147 TGTTTCACACTCCTTCCGATC 57.960 47.619 0.00 0.00 0.00 3.69
2279 2543 2.289444 TGTTTCACACTCCTTCCGATCC 60.289 50.000 0.00 0.00 0.00 3.36
2280 2544 1.639722 TTCACACTCCTTCCGATCCA 58.360 50.000 0.00 0.00 0.00 3.41
2281 2545 1.866015 TCACACTCCTTCCGATCCAT 58.134 50.000 0.00 0.00 0.00 3.41
2282 2546 3.026707 TCACACTCCTTCCGATCCATA 57.973 47.619 0.00 0.00 0.00 2.74
2283 2547 3.576861 TCACACTCCTTCCGATCCATAT 58.423 45.455 0.00 0.00 0.00 1.78
2284 2548 3.967326 TCACACTCCTTCCGATCCATATT 59.033 43.478 0.00 0.00 0.00 1.28
2285 2549 5.144832 TCACACTCCTTCCGATCCATATTA 58.855 41.667 0.00 0.00 0.00 0.98
2286 2550 5.600898 TCACACTCCTTCCGATCCATATTAA 59.399 40.000 0.00 0.00 0.00 1.40
2287 2551 6.270000 TCACACTCCTTCCGATCCATATTAAT 59.730 38.462 0.00 0.00 0.00 1.40
2288 2552 6.936900 CACACTCCTTCCGATCCATATTAATT 59.063 38.462 0.00 0.00 0.00 1.40
2289 2553 6.936900 ACACTCCTTCCGATCCATATTAATTG 59.063 38.462 0.00 0.00 0.00 2.32
2290 2554 6.936900 CACTCCTTCCGATCCATATTAATTGT 59.063 38.462 0.00 0.00 0.00 2.71
2291 2555 7.118390 CACTCCTTCCGATCCATATTAATTGTC 59.882 40.741 0.00 0.00 0.00 3.18
2292 2556 7.073457 TCCTTCCGATCCATATTAATTGTCA 57.927 36.000 0.00 0.00 0.00 3.58
2293 2557 6.934645 TCCTTCCGATCCATATTAATTGTCAC 59.065 38.462 0.00 0.00 0.00 3.67
2294 2558 6.936900 CCTTCCGATCCATATTAATTGTCACT 59.063 38.462 0.00 0.00 0.00 3.41
2295 2559 7.095060 CCTTCCGATCCATATTAATTGTCACTG 60.095 40.741 0.00 0.00 0.00 3.66
2296 2560 5.700832 TCCGATCCATATTAATTGTCACTGC 59.299 40.000 0.00 0.00 0.00 4.40
2297 2561 5.702670 CCGATCCATATTAATTGTCACTGCT 59.297 40.000 0.00 0.00 0.00 4.24
2298 2562 6.205464 CCGATCCATATTAATTGTCACTGCTT 59.795 38.462 0.00 0.00 0.00 3.91
2299 2563 7.387673 CCGATCCATATTAATTGTCACTGCTTA 59.612 37.037 0.00 0.00 0.00 3.09
2300 2564 8.773645 CGATCCATATTAATTGTCACTGCTTAA 58.226 33.333 0.00 0.00 0.00 1.85
2302 2566 9.632638 ATCCATATTAATTGTCACTGCTTAAGT 57.367 29.630 4.02 0.00 40.93 2.24
2308 2572 8.671384 TTAATTGTCACTGCTTAAGTACAACT 57.329 30.769 4.02 1.27 36.83 3.16
2309 2573 7.568199 AATTGTCACTGCTTAAGTACAACTT 57.432 32.000 4.02 0.00 41.97 2.66
2310 2574 6.995511 TTGTCACTGCTTAAGTACAACTTT 57.004 33.333 4.02 0.00 39.51 2.66
2311 2575 6.358118 TGTCACTGCTTAAGTACAACTTTG 57.642 37.500 4.02 0.00 39.51 2.77
2312 2576 5.878116 TGTCACTGCTTAAGTACAACTTTGT 59.122 36.000 4.02 0.00 44.86 2.83
2313 2577 7.042950 TGTCACTGCTTAAGTACAACTTTGTA 58.957 34.615 4.02 0.00 42.35 2.41
2353 2617 3.318017 AGTTGTACTAAAGCAGCGACAG 58.682 45.455 0.00 0.00 0.00 3.51
2361 2625 6.589830 ACTAAAGCAGCGACAGTTAATATG 57.410 37.500 0.00 0.00 0.00 1.78
2407 2671 7.880160 AGTAATACCATGAAAATAGCAGCAA 57.120 32.000 0.00 0.00 0.00 3.91
2525 2790 5.827797 GGTCTTCCATGCCTTGTCATTATTA 59.172 40.000 0.00 0.00 0.00 0.98
2570 2837 8.207545 GTGATCCTATCTCTACTGAACCATTTT 58.792 37.037 0.00 0.00 0.00 1.82
2599 2866 6.959639 AATGCCCTTACCAATGTAATAGTG 57.040 37.500 0.00 0.00 36.40 2.74
2731 3000 9.084533 TGTAAGAGCTTTGTAATAATTTTGGGT 57.915 29.630 0.00 0.00 0.00 4.51
2829 3256 0.995024 ATCCCTGCAGGTTACAAGCT 59.005 50.000 30.63 3.41 37.19 3.74
2951 3378 2.011222 GCATTGATTTGCACCCCATTG 58.989 47.619 0.00 0.00 42.31 2.82
3087 3514 4.579340 AGCATATCAGACAATTTCCTGCTG 59.421 41.667 0.00 0.00 36.20 4.41
3294 3721 5.140747 AGATCTTTTACGTCAGCAGTTCT 57.859 39.130 0.00 0.00 0.00 3.01
3325 3752 3.116063 TGATGCATCGTGCTTTTAACG 57.884 42.857 21.34 0.00 45.31 3.18
3498 3925 4.439700 CCCTCTTTGTGATGATGAATGCAC 60.440 45.833 0.00 0.00 0.00 4.57
3658 4210 7.118971 AGACTTGATAACTGAAGAAACAGATGC 59.881 37.037 0.00 0.00 40.63 3.91
3861 4413 7.088272 TCTTTCATCTGAATCATTTTGTGCTG 58.912 34.615 0.00 0.00 33.54 4.41
3869 4421 6.973843 TGAATCATTTTGTGCTGCTATATCC 58.026 36.000 0.00 0.00 0.00 2.59
3953 4505 1.992557 TGATGGTTGGAAAGGTAGGCT 59.007 47.619 0.00 0.00 0.00 4.58
3991 4543 5.063204 TCCTGAGTTTGTGTTTACATCCTG 58.937 41.667 0.00 0.00 36.53 3.86
4050 4602 1.900486 GGTAGTAGAGTGCAACCCTGT 59.100 52.381 0.00 0.00 37.80 4.00
4051 4603 2.094130 GGTAGTAGAGTGCAACCCTGTC 60.094 54.545 0.00 0.00 37.80 3.51
4167 4720 6.576185 CAGAACTTATTTTGATCCCCAATGG 58.424 40.000 0.00 0.00 34.23 3.16
4168 4721 5.129320 AGAACTTATTTTGATCCCCAATGGC 59.871 40.000 0.00 0.00 34.23 4.40
4220 4773 4.141846 GGCTCACATATCTCCAGTCTTGAA 60.142 45.833 0.00 0.00 0.00 2.69
4460 5015 2.023461 CTCGACTGCGACGCTAGG 59.977 66.667 22.08 13.17 42.51 3.02
4482 5037 5.048643 AGGTGCGACTATGTGACATATCTAC 60.049 44.000 5.65 7.75 0.00 2.59
4635 5190 2.289072 GCTAGAGAAAGCACAGGTGACA 60.289 50.000 3.10 0.00 42.30 3.58
4653 5208 3.568007 TGACAGTTACACCCATTTTGAGC 59.432 43.478 0.00 0.00 0.00 4.26
4657 5212 1.917782 TACACCCATTTTGAGCGCGC 61.918 55.000 26.66 26.66 0.00 6.86
4679 5234 4.033358 GCCAGTCGACATAAACAAGATCAG 59.967 45.833 19.50 0.00 0.00 2.90
4694 5249 2.040178 GATCAGTGGGTAGGTGGGTAG 58.960 57.143 0.00 0.00 0.00 3.18
4750 5305 1.076777 CCCCGGAGATGCATTTGGT 60.077 57.895 0.73 0.00 0.00 3.67
4783 5338 4.946411 CGTATCTCCTACGCTGCC 57.054 61.111 0.00 0.00 45.96 4.85
4807 5362 1.394917 CTGTCAACGCTACAATCTGCC 59.605 52.381 0.00 0.00 0.00 4.85
4832 5387 5.245531 TGGAGAAGATAAAAGACGCAATGT 58.754 37.500 0.00 0.00 0.00 2.71
4852 5407 4.044439 CTGCTCAAGGCCCCTGCT 62.044 66.667 0.00 0.00 40.92 4.24
4892 5448 3.406682 GCTGAAGGCATTTTCACCG 57.593 52.632 0.00 0.00 41.35 4.94
4894 5450 1.533625 CTGAAGGCATTTTCACCGGA 58.466 50.000 9.46 0.00 33.71 5.14
4899 5455 4.082463 TGAAGGCATTTTCACCGGAATTAC 60.082 41.667 9.46 0.00 32.39 1.89
4912 5468 6.151985 TCACCGGAATTACATTAAAAGCATGT 59.848 34.615 9.46 0.00 38.45 3.21
4969 5526 8.564574 TGTACAACAGATAGTTCACCATTTTTC 58.435 33.333 0.00 0.00 38.74 2.29
5010 5567 6.779385 GCAATTTGCTTTGTTTCAAACTTC 57.221 33.333 14.11 0.00 40.96 3.01
5014 5571 6.704512 TTTGCTTTGTTTCAAACTTCTCAC 57.295 33.333 1.10 0.00 0.00 3.51
5046 5603 3.756434 TGTAATTGTCTTTACCTGCAGGC 59.244 43.478 33.06 15.57 39.32 4.85
5114 5671 9.859427 GAAATAATTGATGTTCACTGATTTGGA 57.141 29.630 0.00 0.00 0.00 3.53
5117 5674 7.470935 AATTGATGTTCACTGATTTGGATGA 57.529 32.000 0.00 0.00 0.00 2.92
5142 5699 9.435688 GAAAAAGGCCTTGTAAATCATTTATGT 57.564 29.630 21.33 0.00 0.00 2.29
5175 5775 2.778299 ACATCCTGCTTTTACGCAAGA 58.222 42.857 0.00 0.00 39.80 3.02
5214 5814 8.486210 AGAAATAGCTGATACAATTGACCACTA 58.514 33.333 13.59 6.33 0.00 2.74
5226 5826 3.226346 TGACCACTACAGCGTTATCAC 57.774 47.619 0.00 0.00 0.00 3.06
5241 5841 4.377943 CGTTATCACGTGGCAAAGAAATGA 60.378 41.667 17.00 0.00 41.84 2.57
5247 5847 2.223688 CGTGGCAAAGAAATGACAACCA 60.224 45.455 0.00 0.00 40.79 3.67
5291 5891 4.588528 GGCCATTTTCCCAGCAATTATAGA 59.411 41.667 0.00 0.00 0.00 1.98
5422 6022 1.283793 CCAAGCCACAAACTGCTCG 59.716 57.895 0.00 0.00 36.66 5.03
5431 6031 2.033407 CACAAACTGCTCGTGAGAAGTG 60.033 50.000 11.26 2.95 46.47 3.16
5432 6032 1.070309 CAAACTGCTCGTGAGAAGTGC 60.070 52.381 11.26 0.00 46.47 4.40
5433 6033 0.601311 AACTGCTCGTGAGAAGTGCC 60.601 55.000 11.26 0.00 46.47 5.01
5434 6034 1.005748 CTGCTCGTGAGAAGTGCCA 60.006 57.895 0.00 0.00 41.32 4.92
5435 6035 0.390866 CTGCTCGTGAGAAGTGCCAT 60.391 55.000 0.00 0.00 41.32 4.40
5436 6036 0.390340 TGCTCGTGAGAAGTGCCATC 60.390 55.000 0.00 0.00 41.32 3.51
5437 6037 0.390340 GCTCGTGAGAAGTGCCATCA 60.390 55.000 0.00 0.00 41.32 3.07
5438 6038 1.354040 CTCGTGAGAAGTGCCATCAC 58.646 55.000 0.00 0.00 41.32 3.06
5458 6058 4.887655 TCACTCTTGAGCATAGACCGATAA 59.112 41.667 0.00 0.00 0.00 1.75
5491 6091 8.812329 CAACTGAAAAGTACTGATAGACATAGC 58.188 37.037 0.00 0.00 0.00 2.97
5535 6135 3.693085 CACCAAATTGATGGAGTCTCCTG 59.307 47.826 19.82 7.65 43.54 3.86
5536 6136 3.588842 ACCAAATTGATGGAGTCTCCTGA 59.411 43.478 19.82 0.55 43.54 3.86
5537 6137 4.043310 ACCAAATTGATGGAGTCTCCTGAA 59.957 41.667 19.82 9.81 43.54 3.02
5538 6138 4.397417 CCAAATTGATGGAGTCTCCTGAAC 59.603 45.833 19.82 8.85 43.54 3.18
5544 6147 4.220821 TGATGGAGTCTCCTGAACAAGTAC 59.779 45.833 19.82 0.00 37.46 2.73
5740 6343 1.556911 CCCAACACTAGCAGATCCAGT 59.443 52.381 0.00 0.00 0.00 4.00
5780 6383 0.886490 AGCAGGAAACAACAGCTCCG 60.886 55.000 0.00 0.00 34.22 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.507009 GTCTCCTCCGTCGGACCG 61.507 72.222 10.71 7.84 0.00 4.79
43 44 3.507009 CGTCTCCTCCGTCGGACC 61.507 72.222 10.71 0.00 0.00 4.46
44 45 2.435586 TCGTCTCCTCCGTCGGAC 60.436 66.667 10.71 0.00 0.00 4.79
45 46 2.125229 CTCGTCTCCTCCGTCGGA 60.125 66.667 14.54 14.54 0.00 4.55
46 47 1.584380 AAACTCGTCTCCTCCGTCGG 61.584 60.000 4.39 4.39 0.00 4.79
47 48 0.179194 GAAACTCGTCTCCTCCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
48 49 0.179194 CGAAACTCGTCTCCTCCGTC 60.179 60.000 0.00 0.00 34.72 4.79
49 50 1.584380 CCGAAACTCGTCTCCTCCGT 61.584 60.000 0.00 0.00 38.40 4.69
50 51 1.136984 CCGAAACTCGTCTCCTCCG 59.863 63.158 0.00 0.00 38.40 4.63
51 52 0.170784 GTCCGAAACTCGTCTCCTCC 59.829 60.000 0.00 0.00 38.40 4.30
52 53 0.170784 GGTCCGAAACTCGTCTCCTC 59.829 60.000 0.00 0.00 38.40 3.71
53 54 1.584380 CGGTCCGAAACTCGTCTCCT 61.584 60.000 4.91 0.00 38.40 3.69
54 55 1.154073 CGGTCCGAAACTCGTCTCC 60.154 63.158 4.91 0.00 38.40 3.71
55 56 0.039708 AACGGTCCGAAACTCGTCTC 60.040 55.000 20.51 0.00 38.40 3.36
56 57 0.318445 CAACGGTCCGAAACTCGTCT 60.318 55.000 20.51 0.00 38.40 4.18
57 58 1.280206 CCAACGGTCCGAAACTCGTC 61.280 60.000 20.51 0.00 38.40 4.20
58 59 1.300388 CCAACGGTCCGAAACTCGT 60.300 57.895 20.51 0.00 38.40 4.18
59 60 2.025418 CCCAACGGTCCGAAACTCG 61.025 63.158 20.51 0.00 40.07 4.18
60 61 0.533531 AACCCAACGGTCCGAAACTC 60.534 55.000 20.51 0.00 43.71 3.01
61 62 0.107066 AAACCCAACGGTCCGAAACT 60.107 50.000 20.51 0.00 43.71 2.66
62 63 0.740149 AAAACCCAACGGTCCGAAAC 59.260 50.000 20.51 0.00 43.71 2.78
63 64 2.220313 CTAAAACCCAACGGTCCGAAA 58.780 47.619 20.51 0.00 43.71 3.46
64 65 1.542987 CCTAAAACCCAACGGTCCGAA 60.543 52.381 20.51 0.00 43.71 4.30
65 66 0.035176 CCTAAAACCCAACGGTCCGA 59.965 55.000 20.51 0.00 43.71 4.55
66 67 0.956902 CCCTAAAACCCAACGGTCCG 60.957 60.000 10.48 10.48 43.71 4.79
67 68 1.246056 GCCCTAAAACCCAACGGTCC 61.246 60.000 0.00 0.00 43.71 4.46
68 69 1.579964 CGCCCTAAAACCCAACGGTC 61.580 60.000 0.00 0.00 43.71 4.79
70 71 1.174078 AACGCCCTAAAACCCAACGG 61.174 55.000 0.00 0.00 0.00 4.44
71 72 0.669619 AAACGCCCTAAAACCCAACG 59.330 50.000 0.00 0.00 0.00 4.10
72 73 2.746269 GAAAACGCCCTAAAACCCAAC 58.254 47.619 0.00 0.00 0.00 3.77
73 74 1.337387 CGAAAACGCCCTAAAACCCAA 59.663 47.619 0.00 0.00 0.00 4.12
74 75 0.953003 CGAAAACGCCCTAAAACCCA 59.047 50.000 0.00 0.00 0.00 4.51
75 76 0.241749 CCGAAAACGCCCTAAAACCC 59.758 55.000 0.00 0.00 0.00 4.11
76 77 0.387622 GCCGAAAACGCCCTAAAACC 60.388 55.000 0.00 0.00 0.00 3.27
77 78 0.594602 AGCCGAAAACGCCCTAAAAC 59.405 50.000 0.00 0.00 0.00 2.43
78 79 0.594110 CAGCCGAAAACGCCCTAAAA 59.406 50.000 0.00 0.00 0.00 1.52
79 80 1.238625 CCAGCCGAAAACGCCCTAAA 61.239 55.000 0.00 0.00 0.00 1.85
80 81 1.673009 CCAGCCGAAAACGCCCTAA 60.673 57.895 0.00 0.00 0.00 2.69
81 82 2.046700 CCAGCCGAAAACGCCCTA 60.047 61.111 0.00 0.00 0.00 3.53
84 85 3.733960 GTCCCAGCCGAAAACGCC 61.734 66.667 0.00 0.00 0.00 5.68
85 86 3.733960 GGTCCCAGCCGAAAACGC 61.734 66.667 0.00 0.00 0.00 4.84
86 87 3.053896 GGGTCCCAGCCGAAAACG 61.054 66.667 1.78 0.00 0.00 3.60
87 88 2.675423 GGGGTCCCAGCCGAAAAC 60.675 66.667 10.98 0.00 36.39 2.43
88 89 2.014033 AAAGGGGTCCCAGCCGAAAA 62.014 55.000 10.98 0.00 36.39 2.29
89 90 2.466186 AAAGGGGTCCCAGCCGAAA 61.466 57.895 10.98 0.00 36.39 3.46
90 91 2.856988 AAAGGGGTCCCAGCCGAA 60.857 61.111 10.98 0.00 36.39 4.30
91 92 3.646715 CAAAGGGGTCCCAGCCGA 61.647 66.667 10.98 0.00 36.39 5.54
92 93 3.920093 GACAAAGGGGTCCCAGCCG 62.920 68.421 10.98 0.00 36.39 5.52
93 94 2.035783 GACAAAGGGGTCCCAGCC 59.964 66.667 10.98 0.00 38.92 4.85
94 95 1.303643 CTGACAAAGGGGTCCCAGC 60.304 63.158 10.98 0.00 36.97 4.85
95 96 0.036875 GACTGACAAAGGGGTCCCAG 59.963 60.000 10.98 0.00 36.97 4.45
96 97 1.423794 GGACTGACAAAGGGGTCCCA 61.424 60.000 10.98 0.00 41.48 4.37
97 98 1.379146 GGACTGACAAAGGGGTCCC 59.621 63.158 0.00 0.00 41.48 4.46
98 99 1.003718 CGGACTGACAAAGGGGTCC 60.004 63.158 0.00 0.00 43.22 4.46
99 100 2.055299 TCGGACTGACAAAGGGGTC 58.945 57.895 0.00 0.00 38.29 4.46
100 101 4.306245 TCGGACTGACAAAGGGGT 57.694 55.556 0.00 0.00 0.00 4.95
108 109 2.430921 CTGCCACGTCGGACTGAC 60.431 66.667 6.57 4.17 44.53 3.51
109 110 3.680786 CCTGCCACGTCGGACTGA 61.681 66.667 6.57 0.00 36.56 3.41
110 111 3.991051 ACCTGCCACGTCGGACTG 61.991 66.667 6.57 3.90 36.56 3.51
111 112 3.991051 CACCTGCCACGTCGGACT 61.991 66.667 6.57 0.00 36.56 3.85
112 113 4.295119 ACACCTGCCACGTCGGAC 62.295 66.667 8.04 0.00 36.56 4.79
113 114 4.293648 CACACCTGCCACGTCGGA 62.294 66.667 8.04 0.00 36.56 4.55
141 142 4.394712 GATATGGGGGCGCCCGAG 62.395 72.222 38.22 0.00 46.66 4.63
144 145 4.660938 GTGGATATGGGGGCGCCC 62.661 72.222 38.57 38.57 44.51 6.13
145 146 4.660938 GGTGGATATGGGGGCGCC 62.661 72.222 21.18 21.18 0.00 6.53
146 147 4.660938 GGGTGGATATGGGGGCGC 62.661 72.222 0.00 0.00 0.00 6.53
147 148 2.080336 ATTGGGTGGATATGGGGGCG 62.080 60.000 0.00 0.00 0.00 6.13
148 149 1.080638 TATTGGGTGGATATGGGGGC 58.919 55.000 0.00 0.00 0.00 5.80
149 150 4.095946 CAAATATTGGGTGGATATGGGGG 58.904 47.826 0.00 0.00 0.00 5.40
163 164 5.184479 CACCCTCATATCCAGCCAAATATTG 59.816 44.000 0.00 0.00 0.00 1.90
164 165 5.327732 CACCCTCATATCCAGCCAAATATT 58.672 41.667 0.00 0.00 0.00 1.28
165 166 4.812096 GCACCCTCATATCCAGCCAAATAT 60.812 45.833 0.00 0.00 0.00 1.28
166 167 3.498481 GCACCCTCATATCCAGCCAAATA 60.498 47.826 0.00 0.00 0.00 1.40
167 168 2.754186 GCACCCTCATATCCAGCCAAAT 60.754 50.000 0.00 0.00 0.00 2.32
168 169 1.410083 GCACCCTCATATCCAGCCAAA 60.410 52.381 0.00 0.00 0.00 3.28
169 170 0.183492 GCACCCTCATATCCAGCCAA 59.817 55.000 0.00 0.00 0.00 4.52
170 171 1.708993 GGCACCCTCATATCCAGCCA 61.709 60.000 0.00 0.00 40.29 4.75
171 172 1.073897 GGCACCCTCATATCCAGCC 59.926 63.158 0.00 0.00 0.00 4.85
172 173 1.302033 CGGCACCCTCATATCCAGC 60.302 63.158 0.00 0.00 0.00 4.85
173 174 1.372683 CCGGCACCCTCATATCCAG 59.627 63.158 0.00 0.00 0.00 3.86
174 175 1.383943 ACCGGCACCCTCATATCCA 60.384 57.895 0.00 0.00 0.00 3.41
175 176 1.371558 GACCGGCACCCTCATATCC 59.628 63.158 0.00 0.00 0.00 2.59
176 177 0.034059 CTGACCGGCACCCTCATATC 59.966 60.000 0.00 0.00 0.00 1.63
177 178 2.044806 GCTGACCGGCACCCTCATAT 62.045 60.000 0.00 0.00 0.00 1.78
178 179 2.731571 GCTGACCGGCACCCTCATA 61.732 63.158 0.00 0.00 0.00 2.15
179 180 4.101448 GCTGACCGGCACCCTCAT 62.101 66.667 0.00 0.00 0.00 2.90
190 191 4.481112 CAAATGCCCGCGCTGACC 62.481 66.667 5.56 0.00 35.36 4.02
191 192 3.386867 CTCAAATGCCCGCGCTGAC 62.387 63.158 5.56 0.00 35.36 3.51
192 193 3.126879 CTCAAATGCCCGCGCTGA 61.127 61.111 5.56 0.00 35.36 4.26
193 194 4.183686 CCTCAAATGCCCGCGCTG 62.184 66.667 5.56 0.00 35.36 5.18
201 202 1.067354 CCTCAAACAGGCCTCAAATGC 60.067 52.381 0.00 0.00 34.56 3.56
211 212 2.027625 GACGGACGCCTCAAACAGG 61.028 63.158 0.00 0.00 46.82 4.00
212 213 1.006102 AGACGGACGCCTCAAACAG 60.006 57.895 0.00 0.00 0.00 3.16
213 214 1.300620 CAGACGGACGCCTCAAACA 60.301 57.895 0.00 0.00 0.00 2.83
214 215 2.027625 CCAGACGGACGCCTCAAAC 61.028 63.158 0.00 0.00 0.00 2.93
215 216 1.541310 ATCCAGACGGACGCCTCAAA 61.541 55.000 0.00 0.00 46.79 2.69
216 217 1.541310 AATCCAGACGGACGCCTCAA 61.541 55.000 0.00 0.00 46.79 3.02
217 218 1.982395 AATCCAGACGGACGCCTCA 60.982 57.895 0.00 0.00 46.79 3.86
218 219 1.519455 CAATCCAGACGGACGCCTC 60.519 63.158 0.00 0.00 46.79 4.70
219 220 1.541310 TTCAATCCAGACGGACGCCT 61.541 55.000 0.00 0.00 46.79 5.52
220 221 0.672401 TTTCAATCCAGACGGACGCC 60.672 55.000 0.00 0.00 46.79 5.68
221 222 1.153353 TTTTCAATCCAGACGGACGC 58.847 50.000 0.00 0.00 46.79 5.19
222 223 3.483574 CGATTTTTCAATCCAGACGGACG 60.484 47.826 0.00 0.00 46.79 4.79
223 224 3.435671 ACGATTTTTCAATCCAGACGGAC 59.564 43.478 0.00 0.00 46.79 4.79
225 226 3.435327 TCACGATTTTTCAATCCAGACGG 59.565 43.478 0.00 0.00 36.18 4.79
226 227 4.394795 GTCACGATTTTTCAATCCAGACG 58.605 43.478 0.00 0.00 36.18 4.18
227 228 4.669197 CGGTCACGATTTTTCAATCCAGAC 60.669 45.833 0.00 0.00 44.60 3.51
228 229 3.435327 CGGTCACGATTTTTCAATCCAGA 59.565 43.478 0.00 0.00 44.60 3.86
229 230 3.435327 TCGGTCACGATTTTTCAATCCAG 59.565 43.478 0.00 0.00 45.59 3.86
230 231 3.403968 TCGGTCACGATTTTTCAATCCA 58.596 40.909 0.00 0.00 45.59 3.41
243 244 2.152699 GCGTCACTGATCGGTCACG 61.153 63.158 24.80 24.80 42.74 4.35
244 245 1.805945 GGCGTCACTGATCGGTCAC 60.806 63.158 3.54 0.26 0.00 3.67
245 246 2.571757 GGCGTCACTGATCGGTCA 59.428 61.111 3.54 0.00 0.00 4.02
246 247 2.202756 GGGCGTCACTGATCGGTC 60.203 66.667 3.54 0.00 0.00 4.79
247 248 4.129737 CGGGCGTCACTGATCGGT 62.130 66.667 0.00 0.00 0.00 4.69
248 249 3.822192 TCGGGCGTCACTGATCGG 61.822 66.667 0.00 0.00 0.00 4.18
249 250 2.579787 GTCGGGCGTCACTGATCG 60.580 66.667 0.00 0.00 0.00 3.69
250 251 1.517257 CAGTCGGGCGTCACTGATC 60.517 63.158 1.41 0.00 42.37 2.92
251 252 0.963856 TACAGTCGGGCGTCACTGAT 60.964 55.000 13.79 2.13 42.37 2.90
252 253 1.583495 CTACAGTCGGGCGTCACTGA 61.583 60.000 13.79 0.00 42.37 3.41
253 254 1.154016 CTACAGTCGGGCGTCACTG 60.154 63.158 5.99 5.99 44.83 3.66
254 255 0.892358 TTCTACAGTCGGGCGTCACT 60.892 55.000 0.00 0.00 0.00 3.41
255 256 0.456312 CTTCTACAGTCGGGCGTCAC 60.456 60.000 0.00 0.00 0.00 3.67
256 257 0.607217 TCTTCTACAGTCGGGCGTCA 60.607 55.000 0.00 0.00 0.00 4.35
257 258 0.099082 CTCTTCTACAGTCGGGCGTC 59.901 60.000 0.00 0.00 0.00 5.19
258 259 1.313812 CCTCTTCTACAGTCGGGCGT 61.314 60.000 0.00 0.00 0.00 5.68
259 260 1.433879 CCTCTTCTACAGTCGGGCG 59.566 63.158 0.00 0.00 0.00 6.13
260 261 0.683504 TCCCTCTTCTACAGTCGGGC 60.684 60.000 0.00 0.00 35.46 6.13
261 262 1.394618 CTCCCTCTTCTACAGTCGGG 58.605 60.000 0.00 0.00 36.30 5.14
262 263 1.064611 TCCTCCCTCTTCTACAGTCGG 60.065 57.143 0.00 0.00 0.00 4.79
263 264 2.294074 CTCCTCCCTCTTCTACAGTCG 58.706 57.143 0.00 0.00 0.00 4.18
264 265 2.024751 ACCTCCTCCCTCTTCTACAGTC 60.025 54.545 0.00 0.00 0.00 3.51
265 266 2.004589 ACCTCCTCCCTCTTCTACAGT 58.995 52.381 0.00 0.00 0.00 3.55
266 267 2.838637 ACCTCCTCCCTCTTCTACAG 57.161 55.000 0.00 0.00 0.00 2.74
267 268 3.173965 CAAACCTCCTCCCTCTTCTACA 58.826 50.000 0.00 0.00 0.00 2.74
268 269 3.442076 TCAAACCTCCTCCCTCTTCTAC 58.558 50.000 0.00 0.00 0.00 2.59
269 270 3.566775 CCTCAAACCTCCTCCCTCTTCTA 60.567 52.174 0.00 0.00 0.00 2.10
270 271 2.545810 CTCAAACCTCCTCCCTCTTCT 58.454 52.381 0.00 0.00 0.00 2.85
271 272 1.557371 CCTCAAACCTCCTCCCTCTTC 59.443 57.143 0.00 0.00 0.00 2.87
272 273 1.662686 CCTCAAACCTCCTCCCTCTT 58.337 55.000 0.00 0.00 0.00 2.85
273 274 0.912006 GCCTCAAACCTCCTCCCTCT 60.912 60.000 0.00 0.00 0.00 3.69
274 275 1.604915 GCCTCAAACCTCCTCCCTC 59.395 63.158 0.00 0.00 0.00 4.30
275 276 2.294078 CGCCTCAAACCTCCTCCCT 61.294 63.158 0.00 0.00 0.00 4.20
276 277 2.269241 CGCCTCAAACCTCCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
277 278 2.436824 GCGCCTCAAACCTCCTCC 60.437 66.667 0.00 0.00 0.00 4.30
278 279 2.436824 GGCGCCTCAAACCTCCTC 60.437 66.667 22.15 0.00 0.00 3.71
279 280 2.930562 AGGCGCCTCAAACCTCCT 60.931 61.111 27.08 0.00 0.00 3.69
280 281 2.747855 CAGGCGCCTCAAACCTCC 60.748 66.667 30.29 0.00 0.00 4.30
281 282 2.035442 GTCAGGCGCCTCAAACCTC 61.035 63.158 30.29 8.07 0.00 3.85
282 283 2.032681 GTCAGGCGCCTCAAACCT 59.967 61.111 30.29 0.00 0.00 3.50
283 284 2.032681 AGTCAGGCGCCTCAAACC 59.967 61.111 30.29 12.60 0.00 3.27
284 285 0.320421 TACAGTCAGGCGCCTCAAAC 60.320 55.000 30.29 24.15 0.00 2.93
285 286 0.037326 CTACAGTCAGGCGCCTCAAA 60.037 55.000 30.29 12.87 0.00 2.69
286 287 0.898326 TCTACAGTCAGGCGCCTCAA 60.898 55.000 30.29 15.91 0.00 3.02
287 288 0.684479 ATCTACAGTCAGGCGCCTCA 60.684 55.000 30.29 13.03 0.00 3.86
288 289 0.249238 CATCTACAGTCAGGCGCCTC 60.249 60.000 30.29 17.64 0.00 4.70
289 290 1.819229 CATCTACAGTCAGGCGCCT 59.181 57.895 27.08 27.08 0.00 5.52
290 291 1.884926 GCATCTACAGTCAGGCGCC 60.885 63.158 21.89 21.89 0.00 6.53
291 292 0.873743 GAGCATCTACAGTCAGGCGC 60.874 60.000 0.00 0.00 0.00 6.53
292 293 3.264666 GAGCATCTACAGTCAGGCG 57.735 57.895 0.00 0.00 0.00 5.52
324 325 2.200170 GAACTCATGTTGCGGCCCAC 62.200 60.000 0.00 0.00 36.39 4.61
325 326 1.971167 GAACTCATGTTGCGGCCCA 60.971 57.895 0.00 0.00 36.39 5.36
326 327 1.244019 AAGAACTCATGTTGCGGCCC 61.244 55.000 0.00 0.00 36.39 5.80
327 328 0.109597 CAAGAACTCATGTTGCGGCC 60.110 55.000 0.00 0.00 36.39 6.13
328 329 0.109597 CCAAGAACTCATGTTGCGGC 60.110 55.000 0.00 0.00 36.39 6.53
329 330 0.109597 GCCAAGAACTCATGTTGCGG 60.110 55.000 0.00 0.00 36.39 5.69
330 331 0.453282 CGCCAAGAACTCATGTTGCG 60.453 55.000 0.00 0.00 38.07 4.85
331 332 0.593128 ACGCCAAGAACTCATGTTGC 59.407 50.000 0.00 0.00 36.39 4.17
332 333 1.872952 TGACGCCAAGAACTCATGTTG 59.127 47.619 0.00 0.00 36.39 3.33
333 334 2.254546 TGACGCCAAGAACTCATGTT 57.745 45.000 0.00 0.00 39.42 2.71
334 335 2.254546 TTGACGCCAAGAACTCATGT 57.745 45.000 0.00 0.00 0.00 3.21
344 345 0.461870 CGATCCCATCTTGACGCCAA 60.462 55.000 0.00 0.00 0.00 4.52
345 346 1.143838 CGATCCCATCTTGACGCCA 59.856 57.895 0.00 0.00 0.00 5.69
346 347 0.876342 GTCGATCCCATCTTGACGCC 60.876 60.000 0.00 0.00 0.00 5.68
347 348 1.209275 CGTCGATCCCATCTTGACGC 61.209 60.000 4.52 0.00 44.61 5.19
348 349 2.873367 CGTCGATCCCATCTTGACG 58.127 57.895 3.30 3.30 45.06 4.35
349 350 0.103208 AGCGTCGATCCCATCTTGAC 59.897 55.000 0.00 0.00 0.00 3.18
350 351 0.385751 GAGCGTCGATCCCATCTTGA 59.614 55.000 0.00 0.00 0.00 3.02
351 352 0.598680 GGAGCGTCGATCCCATCTTG 60.599 60.000 18.86 0.00 31.04 3.02
352 353 0.757188 AGGAGCGTCGATCCCATCTT 60.757 55.000 25.23 4.04 39.17 2.40
353 354 1.152652 AGGAGCGTCGATCCCATCT 60.153 57.895 25.23 4.44 39.17 2.90
354 355 1.006805 CAGGAGCGTCGATCCCATC 60.007 63.158 25.23 0.94 39.17 3.51
355 356 1.330655 AACAGGAGCGTCGATCCCAT 61.331 55.000 25.23 11.48 39.17 4.00
356 357 1.982395 AACAGGAGCGTCGATCCCA 60.982 57.895 25.23 0.00 39.17 4.37
357 358 1.519455 CAACAGGAGCGTCGATCCC 60.519 63.158 25.23 8.29 39.17 3.85
358 359 0.526524 CTCAACAGGAGCGTCGATCC 60.527 60.000 21.82 21.82 38.56 3.36
359 360 2.950877 CTCAACAGGAGCGTCGATC 58.049 57.895 0.83 0.83 36.69 3.69
367 368 3.320541 CAGATAGGTAGGCTCAACAGGAG 59.679 52.174 0.00 0.00 46.93 3.69
368 369 3.300388 CAGATAGGTAGGCTCAACAGGA 58.700 50.000 0.00 0.00 0.00 3.86
369 370 3.034635 ACAGATAGGTAGGCTCAACAGG 58.965 50.000 0.00 0.00 0.00 4.00
370 371 3.701542 TGACAGATAGGTAGGCTCAACAG 59.298 47.826 0.00 0.00 0.00 3.16
371 372 3.708451 TGACAGATAGGTAGGCTCAACA 58.292 45.455 0.00 0.00 0.00 3.33
372 373 4.946478 ATGACAGATAGGTAGGCTCAAC 57.054 45.455 0.00 0.00 0.00 3.18
373 374 5.663106 AGAAATGACAGATAGGTAGGCTCAA 59.337 40.000 0.00 0.00 0.00 3.02
374 375 5.211973 AGAAATGACAGATAGGTAGGCTCA 58.788 41.667 0.00 0.00 0.00 4.26
375 376 5.799827 AGAAATGACAGATAGGTAGGCTC 57.200 43.478 0.00 0.00 0.00 4.70
376 377 6.377912 ACTAGAAATGACAGATAGGTAGGCT 58.622 40.000 0.00 0.00 0.00 4.58
377 378 6.492087 AGACTAGAAATGACAGATAGGTAGGC 59.508 42.308 0.00 0.00 0.00 3.93
378 379 7.721842 TCAGACTAGAAATGACAGATAGGTAGG 59.278 40.741 0.00 0.00 0.00 3.18
379 380 8.684386 TCAGACTAGAAATGACAGATAGGTAG 57.316 38.462 0.00 0.00 0.00 3.18
380 381 9.647918 ATTCAGACTAGAAATGACAGATAGGTA 57.352 33.333 0.00 0.00 0.00 3.08
381 382 7.962995 TTCAGACTAGAAATGACAGATAGGT 57.037 36.000 0.00 0.00 0.00 3.08
382 383 9.829507 AAATTCAGACTAGAAATGACAGATAGG 57.170 33.333 0.00 0.00 0.00 2.57
420 421 4.759782 TCAAAAATTCAGCACCCGAAAAA 58.240 34.783 0.00 0.00 0.00 1.94
421 422 4.392921 TCAAAAATTCAGCACCCGAAAA 57.607 36.364 0.00 0.00 0.00 2.29
422 423 4.392921 TTCAAAAATTCAGCACCCGAAA 57.607 36.364 0.00 0.00 0.00 3.46
423 424 4.116238 GTTTCAAAAATTCAGCACCCGAA 58.884 39.130 0.00 0.00 0.00 4.30
424 425 3.491792 GGTTTCAAAAATTCAGCACCCGA 60.492 43.478 0.00 0.00 0.00 5.14
425 426 2.799978 GGTTTCAAAAATTCAGCACCCG 59.200 45.455 0.00 0.00 0.00 5.28
426 427 3.809279 CAGGTTTCAAAAATTCAGCACCC 59.191 43.478 0.00 0.00 0.00 4.61
427 428 4.692228 TCAGGTTTCAAAAATTCAGCACC 58.308 39.130 0.00 0.00 0.00 5.01
428 429 4.746611 CCTCAGGTTTCAAAAATTCAGCAC 59.253 41.667 0.00 0.00 0.00 4.40
429 430 4.405358 ACCTCAGGTTTCAAAAATTCAGCA 59.595 37.500 0.00 0.00 27.29 4.41
430 431 4.948847 ACCTCAGGTTTCAAAAATTCAGC 58.051 39.130 0.00 0.00 27.29 4.26
431 432 7.038154 TGTACCTCAGGTTTCAAAAATTCAG 57.962 36.000 0.00 0.00 37.09 3.02
432 433 7.595819 ATGTACCTCAGGTTTCAAAAATTCA 57.404 32.000 0.00 0.00 37.09 2.57
433 434 9.573133 CATATGTACCTCAGGTTTCAAAAATTC 57.427 33.333 0.00 0.00 37.09 2.17
434 435 9.308000 TCATATGTACCTCAGGTTTCAAAAATT 57.692 29.630 0.00 0.00 37.09 1.82
435 436 8.877864 TCATATGTACCTCAGGTTTCAAAAAT 57.122 30.769 0.00 0.00 37.09 1.82
436 437 8.573035 GTTCATATGTACCTCAGGTTTCAAAAA 58.427 33.333 0.00 0.00 37.09 1.94
437 438 7.175990 GGTTCATATGTACCTCAGGTTTCAAAA 59.824 37.037 20.92 0.00 37.09 2.44
438 439 6.657541 GGTTCATATGTACCTCAGGTTTCAAA 59.342 38.462 20.92 0.00 37.09 2.69
439 440 6.177610 GGTTCATATGTACCTCAGGTTTCAA 58.822 40.000 20.92 0.00 37.09 2.69
440 441 5.338871 GGGTTCATATGTACCTCAGGTTTCA 60.339 44.000 25.36 2.28 37.09 2.69
441 442 5.123936 GGGTTCATATGTACCTCAGGTTTC 58.876 45.833 25.36 7.64 37.09 2.78
442 443 4.538490 TGGGTTCATATGTACCTCAGGTTT 59.462 41.667 25.36 0.00 37.09 3.27
443 444 4.080526 GTGGGTTCATATGTACCTCAGGTT 60.081 45.833 25.36 0.00 37.09 3.50
444 445 3.454812 GTGGGTTCATATGTACCTCAGGT 59.545 47.826 25.36 0.00 40.16 4.00
445 446 3.711704 AGTGGGTTCATATGTACCTCAGG 59.288 47.826 25.36 0.00 35.99 3.86
446 447 5.129485 AGAAGTGGGTTCATATGTACCTCAG 59.871 44.000 25.36 0.00 37.67 3.35
449 450 5.602978 CCTAGAAGTGGGTTCATATGTACCT 59.397 44.000 25.36 10.30 37.67 3.08
498 499 8.421002 ACATGAACTATTTGCAAAAGGTAAACT 58.579 29.630 17.19 0.00 33.80 2.66
504 505 8.034215 TCCAATACATGAACTATTTGCAAAAGG 58.966 33.333 17.19 13.77 0.00 3.11
505 506 8.984891 TCCAATACATGAACTATTTGCAAAAG 57.015 30.769 17.19 16.07 0.00 2.27
521 522 6.575244 TGGGTGAGTTTCTATCCAATACAT 57.425 37.500 0.00 0.00 0.00 2.29
530 531 5.670792 TGTCGTAATGGGTGAGTTTCTAT 57.329 39.130 0.00 0.00 0.00 1.98
550 551 5.306532 TGTTTTTGCATTTTTGCACATGT 57.693 30.435 0.00 0.00 45.32 3.21
772 779 5.807011 GGGATGAATTCACTTTCGGAATTTG 59.193 40.000 11.07 0.00 43.12 2.32
774 781 5.016173 TGGGATGAATTCACTTTCGGAATT 58.984 37.500 11.07 0.00 45.09 2.17
796 803 7.347448 ACGTGATCAATGACGAAAATGATATG 58.653 34.615 8.95 0.00 39.79 1.78
949 959 2.092429 TGAAGTTGCAGGTTCTTCAGGT 60.092 45.455 16.08 0.00 41.33 4.00
997 1195 0.909610 AGGGAGGAGAACGCCATTGA 60.910 55.000 0.00 0.00 41.44 2.57
1450 1654 2.081855 ACTTGATTCCCTCCCCCTTTT 58.918 47.619 0.00 0.00 0.00 2.27
1462 1666 5.120363 GGAACGAAGGACAGTTACTTGATTC 59.880 44.000 0.00 1.61 0.00 2.52
1480 1684 1.899437 GATCCAGGCACCAGGAACGA 61.899 60.000 4.76 0.00 36.63 3.85
1544 1753 5.479306 TCTGACTGGTAATTTGACTGCTAC 58.521 41.667 0.00 0.00 0.00 3.58
1588 1797 4.928661 TTGAAGCGAGCTAACAATCTTC 57.071 40.909 0.00 0.00 0.00 2.87
1736 1952 7.393796 TGGCAAAATTTAAATGCTGAATCCATT 59.606 29.630 11.92 0.00 39.94 3.16
1737 1953 6.885376 TGGCAAAATTTAAATGCTGAATCCAT 59.115 30.769 11.92 0.00 39.94 3.41
1779 1999 9.683069 GGTAAAACTGGATTCATAATGCATTAG 57.317 33.333 22.76 14.99 38.59 1.73
1780 2000 9.194972 TGGTAAAACTGGATTCATAATGCATTA 57.805 29.630 20.95 20.95 38.59 1.90
1781 2001 8.076910 TGGTAAAACTGGATTCATAATGCATT 57.923 30.769 17.56 17.56 38.59 3.56
1782 2002 7.658525 TGGTAAAACTGGATTCATAATGCAT 57.341 32.000 0.00 0.00 38.59 3.96
1783 2003 6.405731 GCTGGTAAAACTGGATTCATAATGCA 60.406 38.462 0.00 0.00 36.85 3.96
1784 2004 5.979517 GCTGGTAAAACTGGATTCATAATGC 59.020 40.000 0.00 0.00 0.00 3.56
1785 2005 6.507023 GGCTGGTAAAACTGGATTCATAATG 58.493 40.000 0.00 0.00 0.00 1.90
1786 2006 5.299279 CGGCTGGTAAAACTGGATTCATAAT 59.701 40.000 0.00 0.00 0.00 1.28
1787 2007 4.638421 CGGCTGGTAAAACTGGATTCATAA 59.362 41.667 0.00 0.00 0.00 1.90
1788 2008 4.196193 CGGCTGGTAAAACTGGATTCATA 58.804 43.478 0.00 0.00 0.00 2.15
1789 2009 3.016736 CGGCTGGTAAAACTGGATTCAT 58.983 45.455 0.00 0.00 0.00 2.57
1790 2010 2.224670 ACGGCTGGTAAAACTGGATTCA 60.225 45.455 0.00 0.00 0.00 2.57
1791 2011 2.418976 GACGGCTGGTAAAACTGGATTC 59.581 50.000 0.00 0.00 0.00 2.52
1792 2012 2.224670 TGACGGCTGGTAAAACTGGATT 60.225 45.455 0.00 0.00 0.00 3.01
1793 2013 1.349688 TGACGGCTGGTAAAACTGGAT 59.650 47.619 0.00 0.00 0.00 3.41
1794 2014 0.759959 TGACGGCTGGTAAAACTGGA 59.240 50.000 0.00 0.00 0.00 3.86
1795 2015 1.821216 ATGACGGCTGGTAAAACTGG 58.179 50.000 0.00 0.00 0.00 4.00
1796 2016 2.351726 GCTATGACGGCTGGTAAAACTG 59.648 50.000 0.00 0.00 0.00 3.16
1797 2017 2.027561 TGCTATGACGGCTGGTAAAACT 60.028 45.455 0.00 0.00 0.00 2.66
1798 2018 2.352388 TGCTATGACGGCTGGTAAAAC 58.648 47.619 0.00 0.00 0.00 2.43
1799 2019 2.772077 TGCTATGACGGCTGGTAAAA 57.228 45.000 0.00 0.00 0.00 1.52
1800 2020 2.772077 TTGCTATGACGGCTGGTAAA 57.228 45.000 0.00 0.00 0.00 2.01
1801 2021 2.772077 TTTGCTATGACGGCTGGTAA 57.228 45.000 0.00 0.00 0.00 2.85
1802 2022 2.772077 TTTTGCTATGACGGCTGGTA 57.228 45.000 0.00 0.00 0.00 3.25
1803 2023 2.128771 ATTTTGCTATGACGGCTGGT 57.871 45.000 0.00 0.00 0.00 4.00
1804 2024 3.508744 AAATTTTGCTATGACGGCTGG 57.491 42.857 0.00 0.00 0.00 4.85
1805 2025 5.051508 GCATTAAATTTTGCTATGACGGCTG 60.052 40.000 7.47 0.00 35.95 4.85
1806 2026 5.043248 GCATTAAATTTTGCTATGACGGCT 58.957 37.500 7.47 0.00 35.95 5.52
1807 2027 4.803088 TGCATTAAATTTTGCTATGACGGC 59.197 37.500 14.29 0.00 39.60 5.68
1808 2028 6.035843 AGTGCATTAAATTTTGCTATGACGG 58.964 36.000 14.29 0.00 39.60 4.79
1809 2029 6.968904 AGAGTGCATTAAATTTTGCTATGACG 59.031 34.615 14.29 0.00 39.60 4.35
1810 2030 7.970061 TCAGAGTGCATTAAATTTTGCTATGAC 59.030 33.333 14.29 5.90 39.60 3.06
1811 2031 8.054152 TCAGAGTGCATTAAATTTTGCTATGA 57.946 30.769 14.29 6.80 39.60 2.15
1812 2032 8.692110 TTCAGAGTGCATTAAATTTTGCTATG 57.308 30.769 14.29 4.94 39.60 2.23
1813 2033 9.525409 GATTCAGAGTGCATTAAATTTTGCTAT 57.475 29.630 14.29 4.77 39.60 2.97
1814 2034 7.975616 GGATTCAGAGTGCATTAAATTTTGCTA 59.024 33.333 14.29 1.17 39.60 3.49
1815 2035 6.815142 GGATTCAGAGTGCATTAAATTTTGCT 59.185 34.615 14.29 0.00 39.60 3.91
1816 2036 6.591062 TGGATTCAGAGTGCATTAAATTTTGC 59.409 34.615 7.74 7.74 39.33 3.68
1817 2037 8.537049 TTGGATTCAGAGTGCATTAAATTTTG 57.463 30.769 0.00 0.00 0.00 2.44
1818 2038 9.729281 AATTGGATTCAGAGTGCATTAAATTTT 57.271 25.926 0.00 0.00 0.00 1.82
1819 2039 9.729281 AAATTGGATTCAGAGTGCATTAAATTT 57.271 25.926 0.00 0.00 0.00 1.82
1820 2040 9.729281 AAAATTGGATTCAGAGTGCATTAAATT 57.271 25.926 0.00 0.00 0.00 1.82
1821 2041 9.374838 GAAAATTGGATTCAGAGTGCATTAAAT 57.625 29.630 0.00 0.00 0.00 1.40
1822 2042 7.818930 GGAAAATTGGATTCAGAGTGCATTAAA 59.181 33.333 0.00 0.00 0.00 1.52
1873 2137 6.825721 AGCTGAATCCAATTTTACTACTCTGG 59.174 38.462 0.00 0.00 0.00 3.86
1898 2162 5.416013 CCTGGGCCAAAAACAAAACTTAAAA 59.584 36.000 8.04 0.00 0.00 1.52
1904 2168 1.021202 GCCTGGGCCAAAAACAAAAC 58.979 50.000 8.04 0.00 34.56 2.43
2034 2298 7.433708 TCTGAATATTCTGCAAACGAGAAAA 57.566 32.000 16.24 0.00 33.22 2.29
2259 2523 2.289444 TGGATCGGAAGGAGTGTGAAAC 60.289 50.000 0.00 0.00 37.35 2.78
2265 2529 6.936900 ACAATTAATATGGATCGGAAGGAGTG 59.063 38.462 0.00 0.00 0.00 3.51
2271 2535 6.204688 GCAGTGACAATTAATATGGATCGGAA 59.795 38.462 0.00 0.00 0.00 4.30
2282 2546 9.284968 AGTTGTACTTAAGCAGTGACAATTAAT 57.715 29.630 1.29 0.00 35.97 1.40
2283 2547 8.671384 AGTTGTACTTAAGCAGTGACAATTAA 57.329 30.769 1.29 0.00 35.97 1.40
2284 2548 8.671384 AAGTTGTACTTAAGCAGTGACAATTA 57.329 30.769 1.29 0.00 36.52 1.40
2285 2549 7.568199 AAGTTGTACTTAAGCAGTGACAATT 57.432 32.000 1.29 0.58 36.52 2.32
2286 2550 7.067008 ACAAAGTTGTACTTAAGCAGTGACAAT 59.933 33.333 1.29 0.00 37.47 2.71
2287 2551 6.373216 ACAAAGTTGTACTTAAGCAGTGACAA 59.627 34.615 1.29 3.27 37.47 3.18
2288 2552 5.878116 ACAAAGTTGTACTTAAGCAGTGACA 59.122 36.000 1.29 0.00 37.47 3.58
2289 2553 6.359480 ACAAAGTTGTACTTAAGCAGTGAC 57.641 37.500 1.29 0.00 37.47 3.67
2310 2574 9.740239 CAACTTTAGTAGTACAACTTCAGTACA 57.260 33.333 2.52 0.00 43.24 2.90
2311 2575 9.741647 ACAACTTTAGTAGTACAACTTCAGTAC 57.258 33.333 2.52 0.00 41.59 2.73
2313 2577 9.741647 GTACAACTTTAGTAGTACAACTTCAGT 57.258 33.333 2.52 0.00 35.54 3.41
2314 2578 9.962783 AGTACAACTTTAGTAGTACAACTTCAG 57.037 33.333 2.52 0.00 39.33 3.02
2321 2585 9.903682 CTGCTTTAGTACAACTTTAGTAGTACA 57.096 33.333 2.52 0.00 39.33 2.90
2322 2586 8.858186 GCTGCTTTAGTACAACTTTAGTAGTAC 58.142 37.037 0.00 0.00 35.54 2.73
2323 2587 7.752239 CGCTGCTTTAGTACAACTTTAGTAGTA 59.248 37.037 0.00 0.00 35.54 1.82
2324 2588 6.585322 CGCTGCTTTAGTACAACTTTAGTAGT 59.415 38.462 0.00 0.00 39.32 2.73
2325 2589 6.805271 TCGCTGCTTTAGTACAACTTTAGTAG 59.195 38.462 0.00 0.00 0.00 2.57
2326 2590 6.583806 GTCGCTGCTTTAGTACAACTTTAGTA 59.416 38.462 0.00 0.00 0.00 1.82
2327 2591 5.404667 GTCGCTGCTTTAGTACAACTTTAGT 59.595 40.000 0.00 0.00 0.00 2.24
2328 2592 5.404366 TGTCGCTGCTTTAGTACAACTTTAG 59.596 40.000 0.00 0.00 0.00 1.85
2329 2593 5.291178 TGTCGCTGCTTTAGTACAACTTTA 58.709 37.500 0.00 0.00 0.00 1.85
2330 2594 4.124238 TGTCGCTGCTTTAGTACAACTTT 58.876 39.130 0.00 0.00 0.00 2.66
2353 2617 5.715753 AGTACTCCCTCCGATCCATATTAAC 59.284 44.000 0.00 0.00 0.00 2.01
2361 2625 1.536940 GCTAGTACTCCCTCCGATCC 58.463 60.000 0.00 0.00 0.00 3.36
2407 2671 5.683876 ATGAGTACAGGATAAGCACTTGT 57.316 39.130 0.00 0.00 0.00 3.16
2425 2689 3.636300 TGGACTGGGAACAACAAAATGAG 59.364 43.478 0.00 0.00 42.06 2.90
2525 2790 6.239064 GGATCACACGAATAGTAAGGAGACAT 60.239 42.308 0.00 0.00 0.00 3.06
2538 2803 6.299922 TCAGTAGAGATAGGATCACACGAAT 58.700 40.000 0.00 0.00 0.00 3.34
2570 2837 7.962995 TTACATTGGTAAGGGCATTTTATCA 57.037 32.000 0.00 0.00 34.63 2.15
2599 2866 8.964150 GCCGTTTTTGTCCATACATAAAATATC 58.036 33.333 0.00 0.00 37.98 1.63
2731 3000 3.261580 CTGCATCCGAAGATACACACAA 58.738 45.455 0.00 0.00 0.00 3.33
2829 3256 9.985730 AATAAGAAAAATCAAGCAATCAGTTCA 57.014 25.926 0.00 0.00 0.00 3.18
3087 3514 0.036022 AGGCAAGTGACTCTGGCTTC 59.964 55.000 14.60 0.00 42.46 3.86
3120 3547 6.262720 AGCATAGAATCAAGAGCCTTGATTTC 59.737 38.462 28.54 23.17 45.88 2.17
3281 3708 3.944055 ATAGTGAAGAACTGCTGACGT 57.056 42.857 0.00 0.00 40.26 4.34
3294 3721 4.437255 GCACGATGCATCAACAATAGTGAA 60.437 41.667 25.70 0.00 44.26 3.18
3325 3752 7.281774 TCTCATCAGATAGAACCTGCAAAAATC 59.718 37.037 0.00 0.00 0.00 2.17
3476 3903 4.398358 AGTGCATTCATCATCACAAAGAGG 59.602 41.667 0.00 0.00 32.25 3.69
3658 4210 5.183969 CCATGCATATCTAGAGAACATGGG 58.816 45.833 28.63 17.92 45.94 4.00
3861 4413 6.042777 TGCAACATTCTATAGCGGATATAGC 58.957 40.000 14.00 4.04 42.18 2.97
3869 4421 4.572389 AGGAAGTTGCAACATTCTATAGCG 59.428 41.667 30.11 0.00 0.00 4.26
3953 4505 1.006400 TCAGGATCTCTGGTGAGCTGA 59.994 52.381 0.00 0.00 43.53 4.26
4050 4602 8.893727 GGCTGCTGTTTAAATAATTTAGAGAGA 58.106 33.333 0.00 0.00 0.00 3.10
4051 4603 8.677300 TGGCTGCTGTTTAAATAATTTAGAGAG 58.323 33.333 0.00 0.00 0.00 3.20
4230 4785 4.433615 ACAACGCACTATTATCAGGACAG 58.566 43.478 0.00 0.00 0.00 3.51
4460 5015 5.758924 TGTAGATATGTCACATAGTCGCAC 58.241 41.667 3.38 6.08 0.00 5.34
4482 5037 4.376146 GAAGCTTAGCTACCTTCCTGATG 58.624 47.826 7.32 0.00 38.25 3.07
4635 5190 1.539827 GCGCTCAAAATGGGTGTAACT 59.460 47.619 0.00 0.00 36.74 2.24
4653 5208 1.343821 GTTTATGTCGACTGGCGCG 59.656 57.895 17.92 0.00 40.61 6.86
4657 5212 5.062683 CACTGATCTTGTTTATGTCGACTGG 59.937 44.000 17.92 0.00 0.00 4.00
4679 5234 1.761198 CTTAGCTACCCACCTACCCAC 59.239 57.143 0.00 0.00 0.00 4.61
4694 5249 4.216257 TGATGCAAGAGAAAACACCTTAGC 59.784 41.667 0.00 0.00 0.00 3.09
4750 5305 3.513912 AGATACGAACACCCTTGTCATCA 59.486 43.478 0.00 0.00 33.55 3.07
4783 5338 0.790207 ATTGTAGCGTTGACAGTGCG 59.210 50.000 0.00 0.00 0.00 5.34
4807 5362 5.801350 TTGCGTCTTTTATCTTCTCCATG 57.199 39.130 0.00 0.00 0.00 3.66
4832 5387 2.123632 AGGGGCCTTGAGCAGAGA 59.876 61.111 0.84 0.00 46.50 3.10
4852 5407 4.407818 CACGCTATTTTTATTGAACCGCA 58.592 39.130 0.00 0.00 0.00 5.69
4892 5448 8.819974 CAATGGACATGCTTTTAATGTAATTCC 58.180 33.333 0.00 0.00 38.37 3.01
4894 5450 7.769970 CCCAATGGACATGCTTTTAATGTAATT 59.230 33.333 0.00 0.00 38.37 1.40
4899 5455 5.341872 TCCCAATGGACATGCTTTTAATG 57.658 39.130 0.00 0.00 35.03 1.90
4912 5468 4.329638 TGCTTCCTATTTTCCCAATGGA 57.670 40.909 0.00 0.00 39.54 3.41
4989 5546 7.603784 AGTGAGAAGTTTGAAACAAAGCAAATT 59.396 29.630 11.02 0.00 36.51 1.82
5010 5567 7.672983 AGACAATTACATTACACCAAGTGAG 57.327 36.000 0.96 0.00 36.96 3.51
5014 5571 9.010029 AGGTAAAGACAATTACATTACACCAAG 57.990 33.333 10.07 0.00 37.48 3.61
5072 5629 5.486735 TTATTTCCCGTCTTAGGTTGTCA 57.513 39.130 0.00 0.00 0.00 3.58
5085 5642 6.435430 TCAGTGAACATCAATTATTTCCCG 57.565 37.500 0.00 0.00 0.00 5.14
5144 5701 8.612619 CGTAAAAGCAGGATGTTAAGTATGATT 58.387 33.333 0.00 0.00 39.31 2.57
5146 5703 6.036735 GCGTAAAAGCAGGATGTTAAGTATGA 59.963 38.462 0.00 0.00 39.31 2.15
5147 5704 6.183360 TGCGTAAAAGCAGGATGTTAAGTATG 60.183 38.462 0.00 0.00 42.92 2.39
5148 5705 5.878116 TGCGTAAAAGCAGGATGTTAAGTAT 59.122 36.000 0.00 0.00 42.92 2.12
5175 5775 5.474532 TCAGCTATTTCTCTTGTGCACAAAT 59.525 36.000 30.62 22.60 35.15 2.32
5214 5814 0.601576 TTGCCACGTGATAACGCTGT 60.602 50.000 19.30 0.00 36.44 4.40
5226 5826 2.223688 TGGTTGTCATTTCTTTGCCACG 60.224 45.455 0.00 0.00 0.00 4.94
5241 5841 2.949451 TTTTCATGCGTTGTGGTTGT 57.051 40.000 0.00 0.00 0.00 3.32
5247 5847 2.030007 CACTGGGATTTTCATGCGTTGT 60.030 45.455 0.00 0.00 0.00 3.32
5320 5920 9.154632 TCTAAAAGTGGATATGCTATCCTGTAA 57.845 33.333 17.66 1.82 38.95 2.41
5430 6030 2.767960 TCTATGCTCAAGAGTGATGGCA 59.232 45.455 0.00 0.00 38.76 4.92
5431 6031 3.129871 GTCTATGCTCAAGAGTGATGGC 58.870 50.000 0.00 0.00 31.85 4.40
5432 6032 3.726607 GGTCTATGCTCAAGAGTGATGG 58.273 50.000 0.00 0.00 31.85 3.51
5433 6033 3.067320 TCGGTCTATGCTCAAGAGTGATG 59.933 47.826 0.00 0.00 31.85 3.07
5434 6034 3.291584 TCGGTCTATGCTCAAGAGTGAT 58.708 45.455 0.00 0.00 31.85 3.06
5435 6035 2.723273 TCGGTCTATGCTCAAGAGTGA 58.277 47.619 0.00 0.00 0.00 3.41
5436 6036 3.724508 ATCGGTCTATGCTCAAGAGTG 57.275 47.619 0.00 0.00 0.00 3.51
5437 6037 5.133941 TCTTATCGGTCTATGCTCAAGAGT 58.866 41.667 0.00 0.00 0.00 3.24
5438 6038 5.240623 ACTCTTATCGGTCTATGCTCAAGAG 59.759 44.000 0.00 0.00 42.10 2.85
5439 6039 5.133941 ACTCTTATCGGTCTATGCTCAAGA 58.866 41.667 0.00 0.00 0.00 3.02
5440 6040 5.446143 ACTCTTATCGGTCTATGCTCAAG 57.554 43.478 0.00 0.00 0.00 3.02
5441 6041 4.278669 GGACTCTTATCGGTCTATGCTCAA 59.721 45.833 0.00 0.00 33.46 3.02
5458 6058 4.654262 TCAGTACTTTTCAGTTGGGACTCT 59.346 41.667 0.00 0.00 32.54 3.24
5535 6135 3.368236 GGATTCTGCACTCGTACTTGTTC 59.632 47.826 0.00 0.00 0.00 3.18
5536 6136 3.244078 TGGATTCTGCACTCGTACTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
5537 6137 2.299013 TGGATTCTGCACTCGTACTTGT 59.701 45.455 0.00 0.00 0.00 3.16
5538 6138 2.959516 TGGATTCTGCACTCGTACTTG 58.040 47.619 0.00 0.00 0.00 3.16
5544 6147 1.081892 CCAGTTGGATTCTGCACTCG 58.918 55.000 0.00 0.00 37.39 4.18
5780 6383 0.460987 CAGAGGAGGACAACCGATGC 60.461 60.000 0.00 0.00 41.83 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.