Multiple sequence alignment - TraesCS1D01G269400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G269400 chr1D 100.000 3638 0 0 1 3638 365039679 365043316 0.000000e+00 6719
1 TraesCS1D01G269400 chr1D 86.667 225 30 0 3414 3638 365063791 365064015 2.170000e-62 250
2 TraesCS1D01G269400 chr1A 92.664 2849 114 43 855 3638 463921136 463923954 0.000000e+00 4015
3 TraesCS1D01G269400 chr1A 89.213 445 29 14 329 759 463920675 463921114 4.130000e-149 538
4 TraesCS1D01G269400 chr1A 87.946 224 27 0 3415 3638 463930074 463930297 7.750000e-67 265
5 TraesCS1D01G269400 chr1B 93.777 2523 103 33 393 2892 488392852 488395343 0.000000e+00 3740
6 TraesCS1D01G269400 chr1B 88.723 736 57 20 2912 3638 488395405 488396123 0.000000e+00 876
7 TraesCS1D01G269400 chr1B 89.333 225 24 0 3414 3638 488463850 488464074 2.140000e-72 283
8 TraesCS1D01G269400 chr3A 86.449 1380 167 18 1225 2594 632777601 632776232 0.000000e+00 1495
9 TraesCS1D01G269400 chr3B 86.275 1377 175 13 1225 2594 652497352 652495983 0.000000e+00 1483
10 TraesCS1D01G269400 chr3D 85.418 1399 184 18 1206 2594 490305334 490303946 0.000000e+00 1435


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G269400 chr1D 365039679 365043316 3637 False 6719.0 6719 100.0000 1 3638 1 chr1D.!!$F1 3637
1 TraesCS1D01G269400 chr1A 463920675 463923954 3279 False 2276.5 4015 90.9385 329 3638 2 chr1A.!!$F2 3309
2 TraesCS1D01G269400 chr1B 488392852 488396123 3271 False 2308.0 3740 91.2500 393 3638 2 chr1B.!!$F2 3245
3 TraesCS1D01G269400 chr3A 632776232 632777601 1369 True 1495.0 1495 86.4490 1225 2594 1 chr3A.!!$R1 1369
4 TraesCS1D01G269400 chr3B 652495983 652497352 1369 True 1483.0 1483 86.2750 1225 2594 1 chr3B.!!$R1 1369
5 TraesCS1D01G269400 chr3D 490303946 490305334 1388 True 1435.0 1435 85.4180 1206 2594 1 chr3D.!!$R1 1388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 307 0.040336 TGTCGTTGCTCTCACTCGTC 60.040 55.0 0.0 0.0 0.0 4.20 F
790 813 0.466124 GCCCCACCACTCAGTATCTC 59.534 60.0 0.0 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1909 2.82719 TCCACCTCGCGCTCGTAT 60.827 61.111 5.56 0.0 36.96 3.06 R
2763 2826 1.92651 GGCATACAAAATTCGCAAGCC 59.073 47.619 0.00 0.0 37.18 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.844946 TGATGTCACGAACAATGGTGT 58.155 42.857 0.00 0.00 42.37 4.16
21 22 2.547634 TGATGTCACGAACAATGGTGTG 59.452 45.455 0.00 0.00 42.37 3.82
22 23 2.317530 TGTCACGAACAATGGTGTGA 57.682 45.000 0.00 0.64 38.27 3.58
23 24 2.844946 TGTCACGAACAATGGTGTGAT 58.155 42.857 6.79 0.00 42.66 3.06
24 25 2.805671 TGTCACGAACAATGGTGTGATC 59.194 45.455 6.79 0.00 42.66 2.92
25 26 2.159627 GTCACGAACAATGGTGTGATCC 59.840 50.000 6.79 0.00 42.66 3.36
26 27 2.038426 TCACGAACAATGGTGTGATCCT 59.962 45.455 0.00 0.00 38.27 3.24
27 28 2.160219 CACGAACAATGGTGTGATCCTG 59.840 50.000 0.00 0.00 38.27 3.86
28 29 1.131126 CGAACAATGGTGTGATCCTGC 59.869 52.381 0.00 0.00 38.27 4.85
29 30 2.161855 GAACAATGGTGTGATCCTGCA 58.838 47.619 0.00 0.00 38.27 4.41
30 31 2.519771 ACAATGGTGTGATCCTGCAT 57.480 45.000 0.00 0.00 36.31 3.96
31 32 2.372264 ACAATGGTGTGATCCTGCATC 58.628 47.619 0.00 0.00 36.31 3.91
32 33 1.679680 CAATGGTGTGATCCTGCATCC 59.320 52.381 0.00 0.00 0.00 3.51
33 34 1.219773 ATGGTGTGATCCTGCATCCT 58.780 50.000 0.00 0.00 0.00 3.24
34 35 0.543277 TGGTGTGATCCTGCATCCTC 59.457 55.000 0.00 0.00 0.00 3.71
35 36 0.531532 GGTGTGATCCTGCATCCTCG 60.532 60.000 0.00 0.00 0.00 4.63
36 37 0.176680 GTGTGATCCTGCATCCTCGT 59.823 55.000 0.00 0.00 0.00 4.18
37 38 0.461548 TGTGATCCTGCATCCTCGTC 59.538 55.000 0.00 0.00 0.00 4.20
38 39 0.461548 GTGATCCTGCATCCTCGTCA 59.538 55.000 0.00 0.00 0.00 4.35
39 40 1.069823 GTGATCCTGCATCCTCGTCAT 59.930 52.381 0.00 0.00 0.00 3.06
40 41 1.069668 TGATCCTGCATCCTCGTCATG 59.930 52.381 0.00 0.00 0.00 3.07
41 42 1.069823 GATCCTGCATCCTCGTCATGT 59.930 52.381 0.00 0.00 0.00 3.21
42 43 0.176449 TCCTGCATCCTCGTCATGTG 59.824 55.000 0.00 0.00 0.00 3.21
43 44 0.812811 CCTGCATCCTCGTCATGTGG 60.813 60.000 0.00 0.00 0.00 4.17
44 45 1.434622 CTGCATCCTCGTCATGTGGC 61.435 60.000 0.00 0.00 0.00 5.01
45 46 1.153289 GCATCCTCGTCATGTGGCT 60.153 57.895 0.00 0.00 0.00 4.75
46 47 1.434622 GCATCCTCGTCATGTGGCTG 61.435 60.000 0.00 0.00 31.97 4.85
47 48 0.176449 CATCCTCGTCATGTGGCTGA 59.824 55.000 0.00 0.00 30.68 4.26
48 49 0.904649 ATCCTCGTCATGTGGCTGAA 59.095 50.000 0.00 0.00 0.00 3.02
49 50 0.684535 TCCTCGTCATGTGGCTGAAA 59.315 50.000 0.00 0.00 0.00 2.69
50 51 1.071542 TCCTCGTCATGTGGCTGAAAA 59.928 47.619 0.00 0.00 0.00 2.29
51 52 1.879380 CCTCGTCATGTGGCTGAAAAA 59.121 47.619 0.00 0.00 0.00 1.94
82 83 9.625747 TTGCTTATATGGATTTGATTGTGTAGA 57.374 29.630 0.00 0.00 0.00 2.59
83 84 9.625747 TGCTTATATGGATTTGATTGTGTAGAA 57.374 29.630 0.00 0.00 0.00 2.10
84 85 9.884465 GCTTATATGGATTTGATTGTGTAGAAC 57.116 33.333 0.00 0.00 0.00 3.01
87 88 5.627499 TGGATTTGATTGTGTAGAACTGC 57.373 39.130 0.00 0.00 0.00 4.40
88 89 5.316167 TGGATTTGATTGTGTAGAACTGCT 58.684 37.500 0.00 0.00 0.00 4.24
89 90 5.769662 TGGATTTGATTGTGTAGAACTGCTT 59.230 36.000 0.00 0.00 0.00 3.91
90 91 6.265196 TGGATTTGATTGTGTAGAACTGCTTT 59.735 34.615 0.00 0.00 0.00 3.51
91 92 7.446931 TGGATTTGATTGTGTAGAACTGCTTTA 59.553 33.333 0.00 0.00 0.00 1.85
92 93 8.296713 GGATTTGATTGTGTAGAACTGCTTTAA 58.703 33.333 0.00 0.00 0.00 1.52
93 94 9.677567 GATTTGATTGTGTAGAACTGCTTTAAA 57.322 29.630 0.00 0.00 0.00 1.52
95 96 8.850454 TTGATTGTGTAGAACTGCTTTAAAAC 57.150 30.769 0.00 0.00 0.00 2.43
96 97 7.422399 TGATTGTGTAGAACTGCTTTAAAACC 58.578 34.615 0.00 0.00 0.00 3.27
97 98 5.412526 TGTGTAGAACTGCTTTAAAACCG 57.587 39.130 0.00 0.00 0.00 4.44
98 99 4.877251 TGTGTAGAACTGCTTTAAAACCGT 59.123 37.500 0.00 0.00 0.00 4.83
99 100 5.006941 TGTGTAGAACTGCTTTAAAACCGTC 59.993 40.000 0.00 0.00 0.00 4.79
100 101 3.872560 AGAACTGCTTTAAAACCGTCG 57.127 42.857 0.00 0.00 0.00 5.12
101 102 3.460103 AGAACTGCTTTAAAACCGTCGA 58.540 40.909 0.00 0.00 0.00 4.20
102 103 3.872771 AGAACTGCTTTAAAACCGTCGAA 59.127 39.130 0.00 0.00 0.00 3.71
103 104 3.872560 ACTGCTTTAAAACCGTCGAAG 57.127 42.857 0.00 0.00 0.00 3.79
104 105 2.032290 ACTGCTTTAAAACCGTCGAAGC 60.032 45.455 7.04 7.04 42.19 3.86
105 106 2.215196 TGCTTTAAAACCGTCGAAGCT 58.785 42.857 13.23 0.00 42.30 3.74
106 107 3.391965 TGCTTTAAAACCGTCGAAGCTA 58.608 40.909 13.23 0.96 42.30 3.32
107 108 3.808726 TGCTTTAAAACCGTCGAAGCTAA 59.191 39.130 13.23 0.00 42.30 3.09
108 109 4.453136 TGCTTTAAAACCGTCGAAGCTAAT 59.547 37.500 13.23 0.00 42.30 1.73
109 110 5.638657 TGCTTTAAAACCGTCGAAGCTAATA 59.361 36.000 13.23 0.00 42.30 0.98
110 111 6.314400 TGCTTTAAAACCGTCGAAGCTAATAT 59.686 34.615 13.23 0.00 42.30 1.28
111 112 6.627671 GCTTTAAAACCGTCGAAGCTAATATG 59.372 38.462 6.79 0.00 39.56 1.78
112 113 4.531659 AAAACCGTCGAAGCTAATATGC 57.468 40.909 0.00 0.00 0.00 3.14
113 114 2.882927 ACCGTCGAAGCTAATATGCA 57.117 45.000 0.00 0.00 34.99 3.96
114 115 3.386768 ACCGTCGAAGCTAATATGCAT 57.613 42.857 3.79 3.79 34.99 3.96
115 116 3.059884 ACCGTCGAAGCTAATATGCATG 58.940 45.455 10.16 0.00 34.99 4.06
116 117 3.059884 CCGTCGAAGCTAATATGCATGT 58.940 45.455 10.16 0.00 34.99 3.21
117 118 3.121944 CCGTCGAAGCTAATATGCATGTC 59.878 47.826 10.16 0.00 34.99 3.06
118 119 3.735746 CGTCGAAGCTAATATGCATGTCA 59.264 43.478 10.16 0.00 34.99 3.58
119 120 4.209080 CGTCGAAGCTAATATGCATGTCAA 59.791 41.667 10.16 0.00 34.99 3.18
120 121 5.435557 GTCGAAGCTAATATGCATGTCAAC 58.564 41.667 10.16 0.00 34.99 3.18
121 122 4.511454 TCGAAGCTAATATGCATGTCAACC 59.489 41.667 10.16 0.00 34.99 3.77
122 123 4.273235 CGAAGCTAATATGCATGTCAACCA 59.727 41.667 10.16 0.00 34.99 3.67
123 124 5.220835 CGAAGCTAATATGCATGTCAACCAA 60.221 40.000 10.16 0.00 34.99 3.67
124 125 6.528537 AAGCTAATATGCATGTCAACCAAA 57.471 33.333 10.16 0.00 34.99 3.28
125 126 6.528537 AGCTAATATGCATGTCAACCAAAA 57.471 33.333 10.16 0.00 34.99 2.44
126 127 6.332630 AGCTAATATGCATGTCAACCAAAAC 58.667 36.000 10.16 0.00 34.99 2.43
127 128 5.519927 GCTAATATGCATGTCAACCAAAACC 59.480 40.000 10.16 0.00 0.00 3.27
128 129 2.837532 ATGCATGTCAACCAAAACCC 57.162 45.000 0.00 0.00 0.00 4.11
129 130 1.786937 TGCATGTCAACCAAAACCCT 58.213 45.000 0.00 0.00 0.00 4.34
130 131 2.114616 TGCATGTCAACCAAAACCCTT 58.885 42.857 0.00 0.00 0.00 3.95
131 132 2.102252 TGCATGTCAACCAAAACCCTTC 59.898 45.455 0.00 0.00 0.00 3.46
132 133 2.862140 GCATGTCAACCAAAACCCTTCG 60.862 50.000 0.00 0.00 0.00 3.79
133 134 1.394618 TGTCAACCAAAACCCTTCGG 58.605 50.000 0.00 0.00 0.00 4.30
135 136 1.066454 GTCAACCAAAACCCTTCGGTG 59.934 52.381 0.00 0.00 43.71 4.94
136 137 1.107945 CAACCAAAACCCTTCGGTGT 58.892 50.000 0.00 0.00 43.71 4.16
137 138 1.066454 CAACCAAAACCCTTCGGTGTC 59.934 52.381 0.00 0.00 43.71 3.67
138 139 0.549469 ACCAAAACCCTTCGGTGTCT 59.451 50.000 0.00 0.00 43.71 3.41
139 140 1.064240 ACCAAAACCCTTCGGTGTCTT 60.064 47.619 0.00 0.00 43.71 3.01
140 141 1.336755 CCAAAACCCTTCGGTGTCTTG 59.663 52.381 0.00 0.00 43.71 3.02
141 142 2.294074 CAAAACCCTTCGGTGTCTTGA 58.706 47.619 0.00 0.00 43.71 3.02
142 143 2.884639 CAAAACCCTTCGGTGTCTTGAT 59.115 45.455 0.00 0.00 43.71 2.57
143 144 2.185004 AACCCTTCGGTGTCTTGATG 57.815 50.000 0.00 0.00 43.71 3.07
144 145 0.324943 ACCCTTCGGTGTCTTGATGG 59.675 55.000 0.00 0.00 42.48 3.51
145 146 0.392998 CCCTTCGGTGTCTTGATGGG 60.393 60.000 0.00 0.00 41.51 4.00
146 147 0.324943 CCTTCGGTGTCTTGATGGGT 59.675 55.000 0.00 0.00 0.00 4.51
147 148 1.271379 CCTTCGGTGTCTTGATGGGTT 60.271 52.381 0.00 0.00 0.00 4.11
148 149 2.076863 CTTCGGTGTCTTGATGGGTTC 58.923 52.381 0.00 0.00 0.00 3.62
149 150 0.323629 TCGGTGTCTTGATGGGTTCC 59.676 55.000 0.00 0.00 0.00 3.62
150 151 0.676782 CGGTGTCTTGATGGGTTCCC 60.677 60.000 0.12 0.12 0.00 3.97
151 152 0.698818 GGTGTCTTGATGGGTTCCCT 59.301 55.000 9.43 0.00 0.00 4.20
152 153 1.340114 GGTGTCTTGATGGGTTCCCTC 60.340 57.143 9.43 5.17 0.00 4.30
153 154 0.613260 TGTCTTGATGGGTTCCCTCG 59.387 55.000 9.43 0.00 0.00 4.63
154 155 0.613777 GTCTTGATGGGTTCCCTCGT 59.386 55.000 9.43 0.00 0.00 4.18
155 156 0.902531 TCTTGATGGGTTCCCTCGTC 59.097 55.000 9.43 5.68 0.00 4.20
156 157 0.613260 CTTGATGGGTTCCCTCGTCA 59.387 55.000 9.43 7.97 0.00 4.35
157 158 1.003118 CTTGATGGGTTCCCTCGTCAA 59.997 52.381 9.43 13.90 0.00 3.18
158 159 1.285280 TGATGGGTTCCCTCGTCAAT 58.715 50.000 9.43 0.00 0.00 2.57
159 160 2.473070 TGATGGGTTCCCTCGTCAATA 58.527 47.619 9.43 0.00 0.00 1.90
160 161 2.434336 TGATGGGTTCCCTCGTCAATAG 59.566 50.000 9.43 0.00 0.00 1.73
161 162 2.241281 TGGGTTCCCTCGTCAATAGA 57.759 50.000 9.43 0.00 0.00 1.98
162 163 1.829222 TGGGTTCCCTCGTCAATAGAC 59.171 52.381 9.43 0.00 41.46 2.59
163 164 1.829222 GGGTTCCCTCGTCAATAGACA 59.171 52.381 0.00 0.00 45.23 3.41
164 165 2.418334 GGGTTCCCTCGTCAATAGACAC 60.418 54.545 0.00 0.00 45.23 3.67
165 166 2.232941 GGTTCCCTCGTCAATAGACACA 59.767 50.000 0.00 0.00 45.23 3.72
166 167 3.306502 GGTTCCCTCGTCAATAGACACAA 60.307 47.826 0.00 0.00 45.23 3.33
167 168 3.587797 TCCCTCGTCAATAGACACAAC 57.412 47.619 0.00 0.00 45.23 3.32
168 169 2.094906 TCCCTCGTCAATAGACACAACG 60.095 50.000 0.00 0.00 45.23 4.10
169 170 2.352421 CCCTCGTCAATAGACACAACGT 60.352 50.000 0.00 0.00 45.23 3.99
170 171 3.314553 CCTCGTCAATAGACACAACGTT 58.685 45.455 0.00 0.00 45.23 3.99
171 172 3.364023 CCTCGTCAATAGACACAACGTTC 59.636 47.826 0.00 0.00 45.23 3.95
172 173 2.975193 TCGTCAATAGACACAACGTTCG 59.025 45.455 0.00 0.00 45.23 3.95
173 174 2.722629 CGTCAATAGACACAACGTTCGT 59.277 45.455 0.00 0.00 45.23 3.85
174 175 3.907788 CGTCAATAGACACAACGTTCGTA 59.092 43.478 0.00 0.00 45.23 3.43
175 176 4.379498 CGTCAATAGACACAACGTTCGTAA 59.621 41.667 0.00 0.00 45.23 3.18
176 177 5.108292 CGTCAATAGACACAACGTTCGTAAA 60.108 40.000 0.00 0.00 45.23 2.01
177 178 6.399249 CGTCAATAGACACAACGTTCGTAAAT 60.399 38.462 0.00 0.00 45.23 1.40
178 179 6.730619 GTCAATAGACACAACGTTCGTAAATG 59.269 38.462 0.00 0.74 44.34 2.32
179 180 6.421501 TCAATAGACACAACGTTCGTAAATGT 59.578 34.615 0.00 3.84 36.14 2.71
180 181 6.774354 ATAGACACAACGTTCGTAAATGTT 57.226 33.333 0.00 0.00 43.75 2.71
188 189 4.647964 ACGTTCGTAAATGTTGATGATGC 58.352 39.130 0.00 0.00 30.21 3.91
189 190 4.153296 ACGTTCGTAAATGTTGATGATGCA 59.847 37.500 0.00 0.00 30.21 3.96
190 191 5.163764 ACGTTCGTAAATGTTGATGATGCAT 60.164 36.000 0.00 0.00 30.21 3.96
191 192 5.738693 CGTTCGTAAATGTTGATGATGCATT 59.261 36.000 0.00 0.00 34.69 3.56
192 193 6.904543 CGTTCGTAAATGTTGATGATGCATTA 59.095 34.615 0.00 0.00 33.13 1.90
193 194 7.587392 CGTTCGTAAATGTTGATGATGCATTAT 59.413 33.333 3.18 3.18 33.13 1.28
194 195 9.236691 GTTCGTAAATGTTGATGATGCATTATT 57.763 29.630 5.32 0.00 33.13 1.40
195 196 9.800433 TTCGTAAATGTTGATGATGCATTATTT 57.200 25.926 5.32 0.00 33.13 1.40
196 197 9.449550 TCGTAAATGTTGATGATGCATTATTTC 57.550 29.630 5.32 0.00 33.13 2.17
197 198 9.235537 CGTAAATGTTGATGATGCATTATTTCA 57.764 29.630 5.32 6.12 33.13 2.69
200 201 9.878667 AAATGTTGATGATGCATTATTTCAGAA 57.121 25.926 5.32 0.00 33.13 3.02
202 203 8.865590 TGTTGATGATGCATTATTTCAGAATG 57.134 30.769 5.32 0.00 37.35 2.67
207 208 2.985751 GCATTATTTCAGAATGCGCGA 58.014 42.857 12.10 0.00 46.91 5.87
208 209 2.715997 GCATTATTTCAGAATGCGCGAC 59.284 45.455 12.10 0.88 46.91 5.19
209 210 2.712132 TTATTTCAGAATGCGCGACG 57.288 45.000 12.10 0.00 34.76 5.12
210 211 0.927537 TATTTCAGAATGCGCGACGG 59.072 50.000 12.10 0.00 34.76 4.79
211 212 0.739462 ATTTCAGAATGCGCGACGGA 60.739 50.000 12.10 0.70 34.76 4.69
212 213 0.739462 TTTCAGAATGCGCGACGGAT 60.739 50.000 12.10 0.89 40.09 4.18
213 214 1.420641 TTCAGAATGCGCGACGGATG 61.421 55.000 12.10 1.96 38.06 3.51
214 215 1.878069 CAGAATGCGCGACGGATGA 60.878 57.895 12.10 0.00 38.06 2.92
215 216 1.589993 AGAATGCGCGACGGATGAG 60.590 57.895 12.10 0.00 38.06 2.90
216 217 1.588932 GAATGCGCGACGGATGAGA 60.589 57.895 12.10 0.00 38.06 3.27
217 218 1.543941 GAATGCGCGACGGATGAGAG 61.544 60.000 12.10 0.00 38.06 3.20
218 219 2.960957 AATGCGCGACGGATGAGAGG 62.961 60.000 12.10 0.00 38.06 3.69
219 220 4.933064 GCGCGACGGATGAGAGGG 62.933 72.222 12.10 0.00 0.00 4.30
220 221 4.271816 CGCGACGGATGAGAGGGG 62.272 72.222 0.00 0.00 0.00 4.79
221 222 3.148279 GCGACGGATGAGAGGGGT 61.148 66.667 0.00 0.00 0.00 4.95
222 223 3.121019 CGACGGATGAGAGGGGTC 58.879 66.667 0.00 0.00 0.00 4.46
223 224 1.753078 CGACGGATGAGAGGGGTCA 60.753 63.158 0.00 0.00 0.00 4.02
224 225 1.320344 CGACGGATGAGAGGGGTCAA 61.320 60.000 0.00 0.00 0.00 3.18
225 226 0.461961 GACGGATGAGAGGGGTCAAG 59.538 60.000 0.00 0.00 0.00 3.02
226 227 0.978146 ACGGATGAGAGGGGTCAAGG 60.978 60.000 0.00 0.00 0.00 3.61
227 228 1.690219 CGGATGAGAGGGGTCAAGGG 61.690 65.000 0.00 0.00 0.00 3.95
228 229 0.326618 GGATGAGAGGGGTCAAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
229 230 0.833949 GATGAGAGGGGTCAAGGGAC 59.166 60.000 0.00 0.00 43.55 4.46
230 231 0.119155 ATGAGAGGGGTCAAGGGACA 59.881 55.000 0.00 0.00 46.17 4.02
231 232 0.545309 TGAGAGGGGTCAAGGGACAG 60.545 60.000 0.00 0.00 46.17 3.51
232 233 0.252284 GAGAGGGGTCAAGGGACAGA 60.252 60.000 0.00 0.00 46.17 3.41
233 234 0.252467 AGAGGGGTCAAGGGACAGAG 60.252 60.000 0.00 0.00 46.17 3.35
234 235 1.904990 GAGGGGTCAAGGGACAGAGC 61.905 65.000 0.00 0.00 46.17 4.09
235 236 2.266055 GGGTCAAGGGACAGAGCG 59.734 66.667 0.00 0.00 46.17 5.03
236 237 2.435059 GGTCAAGGGACAGAGCGC 60.435 66.667 0.00 0.00 46.17 5.92
237 238 2.343758 GTCAAGGGACAGAGCGCA 59.656 61.111 11.47 0.00 43.73 6.09
238 239 1.078848 GTCAAGGGACAGAGCGCAT 60.079 57.895 11.47 0.00 43.73 4.73
239 240 0.674895 GTCAAGGGACAGAGCGCATT 60.675 55.000 11.47 0.00 43.73 3.56
240 241 0.391661 TCAAGGGACAGAGCGCATTC 60.392 55.000 11.47 0.00 0.00 2.67
241 242 0.674581 CAAGGGACAGAGCGCATTCA 60.675 55.000 11.47 0.00 0.00 2.57
242 243 0.392193 AAGGGACAGAGCGCATTCAG 60.392 55.000 11.47 0.00 0.00 3.02
243 244 1.817099 GGGACAGAGCGCATTCAGG 60.817 63.158 11.47 0.00 0.00 3.86
244 245 1.219124 GGACAGAGCGCATTCAGGA 59.781 57.895 11.47 0.00 0.00 3.86
245 246 0.809241 GGACAGAGCGCATTCAGGAG 60.809 60.000 11.47 0.00 0.00 3.69
246 247 0.809241 GACAGAGCGCATTCAGGAGG 60.809 60.000 11.47 0.00 0.00 4.30
247 248 1.220206 CAGAGCGCATTCAGGAGGT 59.780 57.895 11.47 0.00 0.00 3.85
248 249 0.392193 CAGAGCGCATTCAGGAGGTT 60.392 55.000 11.47 0.00 0.00 3.50
249 250 1.134699 CAGAGCGCATTCAGGAGGTTA 60.135 52.381 11.47 0.00 0.00 2.85
250 251 1.134670 AGAGCGCATTCAGGAGGTTAC 60.135 52.381 11.47 0.00 0.00 2.50
251 252 0.107654 AGCGCATTCAGGAGGTTACC 60.108 55.000 11.47 0.00 0.00 2.85
252 253 0.392461 GCGCATTCAGGAGGTTACCA 60.392 55.000 0.30 0.00 0.00 3.25
253 254 1.747206 GCGCATTCAGGAGGTTACCAT 60.747 52.381 0.30 0.00 0.00 3.55
254 255 2.213499 CGCATTCAGGAGGTTACCATC 58.787 52.381 3.51 0.00 0.00 3.51
255 256 2.576615 GCATTCAGGAGGTTACCATCC 58.423 52.381 3.51 7.91 35.71 3.51
256 257 2.749800 GCATTCAGGAGGTTACCATCCC 60.750 54.545 3.51 1.62 36.14 3.85
257 258 2.352561 TTCAGGAGGTTACCATCCCA 57.647 50.000 3.51 0.00 36.14 4.37
258 259 1.879575 TCAGGAGGTTACCATCCCAG 58.120 55.000 3.51 4.29 36.14 4.45
259 260 1.364678 TCAGGAGGTTACCATCCCAGA 59.635 52.381 3.51 6.40 36.14 3.86
260 261 2.196595 CAGGAGGTTACCATCCCAGAA 58.803 52.381 3.51 0.00 36.14 3.02
261 262 2.092914 CAGGAGGTTACCATCCCAGAAC 60.093 54.545 3.51 0.00 36.14 3.01
262 263 2.197465 GGAGGTTACCATCCCAGAACT 58.803 52.381 3.51 0.00 0.00 3.01
263 264 3.013648 AGGAGGTTACCATCCCAGAACTA 59.986 47.826 3.51 0.00 36.14 2.24
264 265 3.388350 GGAGGTTACCATCCCAGAACTAG 59.612 52.174 3.51 0.00 0.00 2.57
265 266 2.772515 AGGTTACCATCCCAGAACTAGC 59.227 50.000 3.51 0.00 0.00 3.42
266 267 2.158798 GGTTACCATCCCAGAACTAGCC 60.159 54.545 0.00 0.00 0.00 3.93
267 268 1.410004 TACCATCCCAGAACTAGCCG 58.590 55.000 0.00 0.00 0.00 5.52
268 269 0.325296 ACCATCCCAGAACTAGCCGA 60.325 55.000 0.00 0.00 0.00 5.54
269 270 0.390860 CCATCCCAGAACTAGCCGAG 59.609 60.000 0.00 0.00 0.00 4.63
270 271 0.390860 CATCCCAGAACTAGCCGAGG 59.609 60.000 0.00 0.00 0.00 4.63
271 272 1.403687 ATCCCAGAACTAGCCGAGGC 61.404 60.000 5.89 5.89 42.33 4.70
272 273 2.359169 CCCAGAACTAGCCGAGGCA 61.359 63.158 17.18 1.68 44.88 4.75
273 274 1.153549 CCAGAACTAGCCGAGGCAC 60.154 63.158 17.18 2.52 44.88 5.01
275 276 1.103803 CAGAACTAGCCGAGGCACTA 58.896 55.000 17.18 0.00 41.55 2.74
276 277 1.066303 CAGAACTAGCCGAGGCACTAG 59.934 57.143 17.18 12.15 41.55 2.57
277 278 0.249114 GAACTAGCCGAGGCACTAGC 60.249 60.000 17.18 0.00 41.55 3.42
278 279 2.005960 AACTAGCCGAGGCACTAGCG 62.006 60.000 17.18 0.49 41.55 4.26
279 280 3.832720 CTAGCCGAGGCACTAGCGC 62.833 68.421 17.18 0.00 41.55 5.92
281 282 4.821589 GCCGAGGCACTAGCGCTT 62.822 66.667 18.68 0.00 41.55 4.68
282 283 2.583593 CCGAGGCACTAGCGCTTC 60.584 66.667 18.68 4.51 41.55 3.86
284 285 2.490217 GAGGCACTAGCGCTTCGA 59.510 61.111 18.68 0.00 41.55 3.71
285 286 1.874466 GAGGCACTAGCGCTTCGAC 60.874 63.158 18.68 6.70 41.55 4.20
286 287 2.126071 GGCACTAGCGCTTCGACA 60.126 61.111 18.68 0.00 43.41 4.35
287 288 1.519455 GGCACTAGCGCTTCGACAT 60.519 57.895 18.68 0.00 43.41 3.06
288 289 1.633171 GCACTAGCGCTTCGACATG 59.367 57.895 18.68 6.56 0.00 3.21
289 290 1.078759 GCACTAGCGCTTCGACATGT 61.079 55.000 18.68 0.00 0.00 3.21
290 291 0.917259 CACTAGCGCTTCGACATGTC 59.083 55.000 18.68 16.21 0.00 3.06
300 301 3.107017 CGACATGTCGTTGCTCTCA 57.893 52.632 34.48 0.00 46.99 3.27
301 302 0.710567 CGACATGTCGTTGCTCTCAC 59.289 55.000 34.48 1.47 46.99 3.51
302 303 1.667177 CGACATGTCGTTGCTCTCACT 60.667 52.381 34.48 0.00 46.99 3.41
303 304 1.989165 GACATGTCGTTGCTCTCACTC 59.011 52.381 10.69 0.00 0.00 3.51
304 305 0.987715 CATGTCGTTGCTCTCACTCG 59.012 55.000 0.00 0.00 0.00 4.18
305 306 0.598562 ATGTCGTTGCTCTCACTCGT 59.401 50.000 0.00 0.00 0.00 4.18
306 307 0.040336 TGTCGTTGCTCTCACTCGTC 60.040 55.000 0.00 0.00 0.00 4.20
307 308 0.040336 GTCGTTGCTCTCACTCGTCA 60.040 55.000 0.00 0.00 0.00 4.35
308 309 0.666374 TCGTTGCTCTCACTCGTCAA 59.334 50.000 0.00 0.00 0.00 3.18
309 310 1.056103 CGTTGCTCTCACTCGTCAAG 58.944 55.000 0.00 0.00 0.00 3.02
310 311 1.335051 CGTTGCTCTCACTCGTCAAGA 60.335 52.381 0.00 0.00 0.00 3.02
311 312 2.743938 GTTGCTCTCACTCGTCAAGAA 58.256 47.619 0.00 0.00 0.00 2.52
312 313 2.713895 TGCTCTCACTCGTCAAGAAG 57.286 50.000 0.00 0.00 0.00 2.85
313 314 1.270826 TGCTCTCACTCGTCAAGAAGG 59.729 52.381 0.00 0.00 0.00 3.46
314 315 1.271102 GCTCTCACTCGTCAAGAAGGT 59.729 52.381 0.00 0.00 0.00 3.50
315 316 2.288518 GCTCTCACTCGTCAAGAAGGTT 60.289 50.000 0.00 0.00 0.00 3.50
316 317 3.800604 GCTCTCACTCGTCAAGAAGGTTT 60.801 47.826 0.00 0.00 0.00 3.27
317 318 4.372656 CTCTCACTCGTCAAGAAGGTTTT 58.627 43.478 0.00 0.00 0.00 2.43
318 319 4.766375 TCTCACTCGTCAAGAAGGTTTTT 58.234 39.130 0.00 0.00 0.00 1.94
353 354 6.017440 CGTCAAGAAGGTTTTCATAAGGTCAA 60.017 38.462 0.00 0.00 35.70 3.18
356 357 7.228706 TCAAGAAGGTTTTCATAAGGTCAACTC 59.771 37.037 0.00 0.00 35.70 3.01
365 366 5.551233 TCATAAGGTCAACTCCTTCACTTG 58.449 41.667 1.07 0.00 45.35 3.16
370 371 3.070302 GGTCAACTCCTTCACTTGAGACT 59.930 47.826 0.00 0.00 32.84 3.24
378 379 4.061596 CCTTCACTTGAGACTGTCTTTCC 58.938 47.826 12.27 0.00 0.00 3.13
429 430 2.481568 TGACTGTTCGTAGTAGTCACCG 59.518 50.000 0.00 0.00 44.10 4.94
447 449 3.431912 CACCGACATCAAGATTTTGACGA 59.568 43.478 0.00 0.00 45.54 4.20
456 458 7.439056 ACATCAAGATTTTGACGAGCAATTTTT 59.561 29.630 0.00 0.00 45.54 1.94
521 524 3.189080 GCGGCTCATATATGCATTTGTGA 59.811 43.478 14.13 14.13 0.00 3.58
531 534 9.752961 CATATATGCATTTGTGATTTTCTTCCA 57.247 29.630 3.54 0.00 0.00 3.53
559 562 6.494893 TTCTATTTTGCGCAATGTAACTCT 57.505 33.333 25.64 3.34 0.00 3.24
562 565 1.164411 TTGCGCAATGTAACTCTGGG 58.836 50.000 21.02 0.00 0.00 4.45
615 618 9.912634 ATATTTTGTGTTGAATAAAGAGTGGTG 57.087 29.630 0.00 0.00 0.00 4.17
653 670 6.850752 AAGAAAAGAAAAACTTGGTCCTCA 57.149 33.333 0.00 0.00 38.98 3.86
790 813 0.466124 GCCCCACCACTCAGTATCTC 59.534 60.000 0.00 0.00 0.00 2.75
800 823 4.431809 CACTCAGTATCTCTGCCTGAAAG 58.568 47.826 0.00 0.00 43.32 2.62
801 824 3.118811 ACTCAGTATCTCTGCCTGAAAGC 60.119 47.826 0.00 0.00 43.32 3.51
829 857 3.118519 GGTACCATCACCGTATCAGGTTT 60.119 47.826 7.15 0.00 43.00 3.27
830 858 2.985896 ACCATCACCGTATCAGGTTTG 58.014 47.619 0.00 0.00 43.00 2.93
831 859 2.304761 ACCATCACCGTATCAGGTTTGT 59.695 45.455 0.00 0.00 43.00 2.83
832 860 3.516300 ACCATCACCGTATCAGGTTTGTA 59.484 43.478 0.00 0.00 43.00 2.41
833 861 3.869246 CCATCACCGTATCAGGTTTGTAC 59.131 47.826 0.00 0.00 43.00 2.90
835 863 4.603989 TCACCGTATCAGGTTTGTACAA 57.396 40.909 3.59 3.59 43.00 2.41
836 864 4.309099 TCACCGTATCAGGTTTGTACAAC 58.691 43.478 8.07 3.81 43.00 3.32
837 865 3.122278 CACCGTATCAGGTTTGTACAACG 59.878 47.826 8.07 6.64 43.00 4.10
878 908 2.185867 GCATCCTACGGCGGACAA 59.814 61.111 13.24 0.00 35.52 3.18
984 1020 3.023116 CCAGCAATCCCCTCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
993 1030 3.411517 CCCTCCCCAATCAGCCGT 61.412 66.667 0.00 0.00 0.00 5.68
1052 1092 4.593864 GTCGCGCCTCCTCCATCC 62.594 72.222 0.00 0.00 0.00 3.51
1089 1129 2.124109 TCCAAGCGCCACAACCAA 60.124 55.556 2.29 0.00 0.00 3.67
1095 1135 2.721231 CGCCACAACCAACACCAG 59.279 61.111 0.00 0.00 0.00 4.00
1542 1585 1.079127 CTACAGGTTCGGGCAGGTG 60.079 63.158 0.00 0.00 0.00 4.00
1866 1909 4.492160 GACCTCATCGACGCCGCA 62.492 66.667 0.00 0.00 35.37 5.69
2028 2071 1.154016 CTTCTCGCACGACGTCCAT 60.154 57.895 10.58 0.00 44.19 3.41
2635 2678 1.139095 GCCGAATTCGACGAGGAGT 59.861 57.895 28.76 0.00 43.02 3.85
2636 2679 1.140407 GCCGAATTCGACGAGGAGTG 61.140 60.000 28.76 9.76 43.02 3.51
2637 2680 0.450583 CCGAATTCGACGAGGAGTGA 59.549 55.000 28.76 0.00 43.02 3.41
2638 2681 1.536149 CGAATTCGACGAGGAGTGAC 58.464 55.000 23.29 0.00 43.02 3.67
2639 2682 1.794437 CGAATTCGACGAGGAGTGACC 60.794 57.143 23.29 0.00 43.02 4.02
2640 2683 0.170561 AATTCGACGAGGAGTGACCG 59.829 55.000 0.00 0.00 44.74 4.79
2641 2684 1.654954 ATTCGACGAGGAGTGACCGG 61.655 60.000 0.00 0.00 44.74 5.28
2642 2685 3.054503 CGACGAGGAGTGACCGGT 61.055 66.667 6.92 6.92 44.74 5.28
2643 2686 2.567049 GACGAGGAGTGACCGGTG 59.433 66.667 14.63 0.00 44.74 4.94
2644 2687 1.970114 GACGAGGAGTGACCGGTGA 60.970 63.158 14.63 0.00 44.74 4.02
2645 2688 1.924320 GACGAGGAGTGACCGGTGAG 61.924 65.000 14.63 0.00 44.74 3.51
2646 2689 2.574399 GAGGAGTGACCGGTGAGC 59.426 66.667 14.63 0.75 44.74 4.26
2647 2690 2.203640 AGGAGTGACCGGTGAGCA 60.204 61.111 14.63 0.00 44.74 4.26
2759 2822 2.426522 CGGAGCTTGAATGAAACCTGA 58.573 47.619 0.00 0.00 0.00 3.86
2761 2824 3.416156 GGAGCTTGAATGAAACCTGAGT 58.584 45.455 0.00 0.00 0.00 3.41
2763 2826 4.633565 GGAGCTTGAATGAAACCTGAGTAG 59.366 45.833 0.00 0.00 0.00 2.57
2808 2871 6.932947 TGCAACATCATTTGGTCATGAATTA 58.067 32.000 0.00 0.00 36.74 1.40
2848 2911 1.401761 AGTTGCTGCAATGGTTGACA 58.598 45.000 19.11 0.00 0.00 3.58
3000 3109 7.516198 ACACTTTCAGCATACTTTTCTGAAT 57.484 32.000 4.97 0.00 43.67 2.57
3009 3141 8.804743 CAGCATACTTTTCTGAATATTTTGCTG 58.195 33.333 19.40 19.40 43.96 4.41
3015 3147 9.822185 ACTTTTCTGAATATTTTGCTGAACTTT 57.178 25.926 0.00 0.00 0.00 2.66
3019 3151 9.467258 TTCTGAATATTTTGCTGAACTTTTCTG 57.533 29.630 0.00 0.00 0.00 3.02
3028 3160 9.814899 TTTTGCTGAACTTTTCTGAATATTCAA 57.185 25.926 18.47 7.71 36.64 2.69
3029 3161 9.814899 TTTGCTGAACTTTTCTGAATATTCAAA 57.185 25.926 18.47 12.59 36.64 2.69
3030 3162 9.814899 TTGCTGAACTTTTCTGAATATTCAAAA 57.185 25.926 18.47 15.09 36.64 2.44
3031 3163 9.814899 TGCTGAACTTTTCTGAATATTCAAAAA 57.185 25.926 18.47 21.21 36.64 1.94
3042 3174 9.283768 TCTGAATATTCAAAAAGTTCAGCTACA 57.716 29.630 18.47 0.00 43.25 2.74
3043 3175 9.897744 CTGAATATTCAAAAAGTTCAGCTACAA 57.102 29.630 18.47 0.00 39.26 2.41
3048 3180 7.566760 TTCAAAAAGTTCAGCTACAATCTGA 57.433 32.000 0.00 0.00 38.67 3.27
3049 3181 7.566760 TCAAAAAGTTCAGCTACAATCTGAA 57.433 32.000 1.72 1.72 45.25 3.02
3137 3269 5.185828 GGTGCTAAAACCCAAGAATCAAGAT 59.814 40.000 0.00 0.00 33.79 2.40
3140 3272 7.657354 GTGCTAAAACCCAAGAATCAAGATTTT 59.343 33.333 0.00 0.00 0.00 1.82
3166 3298 7.222872 AGGATGGATGAATCTATCTTGTTCAC 58.777 38.462 14.13 0.00 42.40 3.18
3230 3362 0.617413 CCCATGTTCTCAGACTGGCT 59.383 55.000 1.81 0.00 0.00 4.75
3231 3363 1.833630 CCCATGTTCTCAGACTGGCTA 59.166 52.381 1.81 0.00 0.00 3.93
3232 3364 2.158986 CCCATGTTCTCAGACTGGCTAG 60.159 54.545 1.81 0.00 0.00 3.42
3233 3365 2.499289 CCATGTTCTCAGACTGGCTAGT 59.501 50.000 0.69 0.69 40.66 2.57
3242 3374 1.465794 GACTGGCTAGTCCGAACTCT 58.534 55.000 18.87 0.00 46.14 3.24
3243 3375 1.133407 GACTGGCTAGTCCGAACTCTG 59.867 57.143 18.87 0.00 46.14 3.35
3244 3376 1.271982 ACTGGCTAGTCCGAACTCTGA 60.272 52.381 0.00 0.00 36.92 3.27
3245 3377 1.819288 CTGGCTAGTCCGAACTCTGAA 59.181 52.381 0.00 0.00 36.92 3.02
3250 3382 3.428316 GCTAGTCCGAACTCTGAAGAAGG 60.428 52.174 0.00 0.00 36.92 3.46
3251 3383 1.896465 AGTCCGAACTCTGAAGAAGGG 59.104 52.381 0.00 0.00 0.00 3.95
3283 3415 2.030946 GTGTTCAAGTGTGTCTGTGCTC 59.969 50.000 0.00 0.00 0.00 4.26
3345 3483 2.504681 CGAAACATTGCTGCCGGC 60.505 61.111 22.73 22.73 42.22 6.13
3362 3500 1.202110 CGGCAGAATCAGCACATGAAC 60.202 52.381 0.00 0.00 42.53 3.18
3387 3525 4.339748 TGGAATTGCCAGCATACAACTTA 58.660 39.130 0.00 0.00 43.33 2.24
3388 3526 4.157656 TGGAATTGCCAGCATACAACTTAC 59.842 41.667 0.00 0.00 43.33 2.34
3405 3564 4.178540 ACTTACCACACATAATTCGTCGG 58.821 43.478 0.00 0.00 0.00 4.79
3435 3594 3.316308 GTCAATGAACACTGACAGCCTTT 59.684 43.478 10.75 0.00 41.35 3.11
3454 3613 7.165318 CAGCCTTTCTTTTGTAAACGTAAGAAC 59.835 37.037 8.14 0.00 36.61 3.01
3465 3624 7.715657 TGTAAACGTAAGAACCTGAGAAGTAA 58.284 34.615 0.00 0.00 43.62 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.805671 TCACACCATTGTTCGTGACATC 59.194 45.455 0.00 0.00 38.26 3.06
2 3 2.844946 TCACACCATTGTTCGTGACAT 58.155 42.857 0.00 0.00 38.26 3.06
3 4 2.317530 TCACACCATTGTTCGTGACA 57.682 45.000 0.00 0.00 33.61 3.58
4 5 2.159627 GGATCACACCATTGTTCGTGAC 59.840 50.000 0.00 0.00 40.91 3.67
6 7 2.160219 CAGGATCACACCATTGTTCGTG 59.840 50.000 0.00 0.00 31.66 4.35
7 8 2.426522 CAGGATCACACCATTGTTCGT 58.573 47.619 0.00 0.00 31.66 3.85
8 9 1.131126 GCAGGATCACACCATTGTTCG 59.869 52.381 0.00 0.00 31.66 3.95
9 10 2.161855 TGCAGGATCACACCATTGTTC 58.838 47.619 0.00 0.00 31.66 3.18
10 11 2.291209 TGCAGGATCACACCATTGTT 57.709 45.000 0.00 0.00 31.66 2.83
11 12 2.372264 GATGCAGGATCACACCATTGT 58.628 47.619 0.00 0.00 35.84 2.71
12 13 1.679680 GGATGCAGGATCACACCATTG 59.320 52.381 4.07 0.00 31.91 2.82
13 14 1.567649 AGGATGCAGGATCACACCATT 59.432 47.619 4.07 0.00 31.91 3.16
14 15 1.142465 GAGGATGCAGGATCACACCAT 59.858 52.381 4.07 0.00 31.91 3.55
15 16 0.543277 GAGGATGCAGGATCACACCA 59.457 55.000 4.07 0.00 31.91 4.17
16 17 0.531532 CGAGGATGCAGGATCACACC 60.532 60.000 4.07 0.00 31.91 4.16
17 18 0.176680 ACGAGGATGCAGGATCACAC 59.823 55.000 4.07 0.00 31.91 3.82
18 19 0.461548 GACGAGGATGCAGGATCACA 59.538 55.000 4.07 0.00 31.91 3.58
19 20 0.461548 TGACGAGGATGCAGGATCAC 59.538 55.000 4.07 0.00 31.91 3.06
20 21 1.069668 CATGACGAGGATGCAGGATCA 59.930 52.381 4.07 0.00 31.91 2.92
21 22 1.069823 ACATGACGAGGATGCAGGATC 59.930 52.381 0.00 0.00 0.00 3.36
22 23 1.126488 ACATGACGAGGATGCAGGAT 58.874 50.000 0.00 0.00 0.00 3.24
23 24 0.176449 CACATGACGAGGATGCAGGA 59.824 55.000 0.00 0.00 0.00 3.86
24 25 0.812811 CCACATGACGAGGATGCAGG 60.813 60.000 0.00 0.00 0.00 4.85
25 26 1.434622 GCCACATGACGAGGATGCAG 61.435 60.000 0.00 0.00 0.00 4.41
26 27 1.450134 GCCACATGACGAGGATGCA 60.450 57.895 0.00 0.00 0.00 3.96
27 28 1.153289 AGCCACATGACGAGGATGC 60.153 57.895 0.00 0.00 0.00 3.91
28 29 0.176449 TCAGCCACATGACGAGGATG 59.824 55.000 0.00 4.96 42.51 3.51
29 30 0.904649 TTCAGCCACATGACGAGGAT 59.095 50.000 0.00 0.00 0.00 3.24
30 31 0.684535 TTTCAGCCACATGACGAGGA 59.315 50.000 0.00 0.00 0.00 3.71
31 32 1.522668 TTTTCAGCCACATGACGAGG 58.477 50.000 0.00 0.00 0.00 4.63
56 57 9.625747 TCTACACAATCAAATCCATATAAGCAA 57.374 29.630 0.00 0.00 0.00 3.91
57 58 9.625747 TTCTACACAATCAAATCCATATAAGCA 57.374 29.630 0.00 0.00 0.00 3.91
58 59 9.884465 GTTCTACACAATCAAATCCATATAAGC 57.116 33.333 0.00 0.00 0.00 3.09
61 62 9.056005 GCAGTTCTACACAATCAAATCCATATA 57.944 33.333 0.00 0.00 0.00 0.86
62 63 7.776969 AGCAGTTCTACACAATCAAATCCATAT 59.223 33.333 0.00 0.00 0.00 1.78
63 64 7.112122 AGCAGTTCTACACAATCAAATCCATA 58.888 34.615 0.00 0.00 0.00 2.74
64 65 5.948162 AGCAGTTCTACACAATCAAATCCAT 59.052 36.000 0.00 0.00 0.00 3.41
65 66 5.316167 AGCAGTTCTACACAATCAAATCCA 58.684 37.500 0.00 0.00 0.00 3.41
66 67 5.886960 AGCAGTTCTACACAATCAAATCC 57.113 39.130 0.00 0.00 0.00 3.01
67 68 9.677567 TTTAAAGCAGTTCTACACAATCAAATC 57.322 29.630 0.00 0.00 0.00 2.17
69 70 9.296400 GTTTTAAAGCAGTTCTACACAATCAAA 57.704 29.630 0.00 0.00 0.00 2.69
70 71 7.918562 GGTTTTAAAGCAGTTCTACACAATCAA 59.081 33.333 4.36 0.00 0.00 2.57
71 72 7.422399 GGTTTTAAAGCAGTTCTACACAATCA 58.578 34.615 4.36 0.00 0.00 2.57
72 73 6.577427 CGGTTTTAAAGCAGTTCTACACAATC 59.423 38.462 7.66 0.00 0.00 2.67
73 74 6.038936 ACGGTTTTAAAGCAGTTCTACACAAT 59.961 34.615 7.66 0.00 0.00 2.71
74 75 5.354792 ACGGTTTTAAAGCAGTTCTACACAA 59.645 36.000 7.66 0.00 0.00 3.33
75 76 4.877251 ACGGTTTTAAAGCAGTTCTACACA 59.123 37.500 7.66 0.00 0.00 3.72
76 77 5.413969 ACGGTTTTAAAGCAGTTCTACAC 57.586 39.130 7.66 0.00 0.00 2.90
77 78 4.209703 CGACGGTTTTAAAGCAGTTCTACA 59.790 41.667 9.01 0.00 0.00 2.74
78 79 4.445385 TCGACGGTTTTAAAGCAGTTCTAC 59.555 41.667 9.01 0.00 0.00 2.59
79 80 4.619973 TCGACGGTTTTAAAGCAGTTCTA 58.380 39.130 9.01 0.00 0.00 2.10
80 81 3.460103 TCGACGGTTTTAAAGCAGTTCT 58.540 40.909 9.01 0.00 0.00 3.01
81 82 3.865224 TCGACGGTTTTAAAGCAGTTC 57.135 42.857 9.01 3.08 0.00 3.01
82 83 3.547413 GCTTCGACGGTTTTAAAGCAGTT 60.547 43.478 9.01 0.00 41.46 3.16
83 84 2.032290 GCTTCGACGGTTTTAAAGCAGT 60.032 45.455 7.50 7.50 41.46 4.40
84 85 2.223377 AGCTTCGACGGTTTTAAAGCAG 59.777 45.455 16.09 2.58 43.65 4.24
85 86 2.215196 AGCTTCGACGGTTTTAAAGCA 58.785 42.857 16.09 0.00 43.65 3.91
86 87 2.963498 AGCTTCGACGGTTTTAAAGC 57.037 45.000 8.24 8.24 42.00 3.51
87 88 6.627671 GCATATTAGCTTCGACGGTTTTAAAG 59.372 38.462 0.00 0.00 0.00 1.85
88 89 6.092396 TGCATATTAGCTTCGACGGTTTTAAA 59.908 34.615 0.00 0.00 34.99 1.52
89 90 5.581479 TGCATATTAGCTTCGACGGTTTTAA 59.419 36.000 0.00 0.00 34.99 1.52
90 91 5.110598 TGCATATTAGCTTCGACGGTTTTA 58.889 37.500 0.00 0.00 34.99 1.52
91 92 3.936453 TGCATATTAGCTTCGACGGTTTT 59.064 39.130 0.00 0.00 34.99 2.43
92 93 3.527533 TGCATATTAGCTTCGACGGTTT 58.472 40.909 0.00 0.00 34.99 3.27
93 94 3.173668 TGCATATTAGCTTCGACGGTT 57.826 42.857 0.00 0.00 34.99 4.44
94 95 2.882927 TGCATATTAGCTTCGACGGT 57.117 45.000 0.00 0.00 34.99 4.83
95 96 3.059884 ACATGCATATTAGCTTCGACGG 58.940 45.455 0.00 0.00 34.99 4.79
96 97 3.735746 TGACATGCATATTAGCTTCGACG 59.264 43.478 0.00 0.00 34.99 5.12
97 98 5.435557 GTTGACATGCATATTAGCTTCGAC 58.564 41.667 0.00 0.00 34.99 4.20
98 99 4.511454 GGTTGACATGCATATTAGCTTCGA 59.489 41.667 0.00 0.00 34.99 3.71
99 100 4.273235 TGGTTGACATGCATATTAGCTTCG 59.727 41.667 0.00 0.00 34.99 3.79
100 101 5.756195 TGGTTGACATGCATATTAGCTTC 57.244 39.130 0.00 0.00 34.99 3.86
101 102 6.528537 TTTGGTTGACATGCATATTAGCTT 57.471 33.333 0.00 0.00 34.99 3.74
102 103 6.332630 GTTTTGGTTGACATGCATATTAGCT 58.667 36.000 0.00 0.00 34.99 3.32
103 104 5.519927 GGTTTTGGTTGACATGCATATTAGC 59.480 40.000 0.00 0.00 0.00 3.09
104 105 6.042143 GGGTTTTGGTTGACATGCATATTAG 58.958 40.000 0.00 0.00 0.00 1.73
105 106 5.719085 AGGGTTTTGGTTGACATGCATATTA 59.281 36.000 0.00 0.00 0.00 0.98
106 107 4.531732 AGGGTTTTGGTTGACATGCATATT 59.468 37.500 0.00 0.00 0.00 1.28
107 108 4.095946 AGGGTTTTGGTTGACATGCATAT 58.904 39.130 0.00 0.00 0.00 1.78
108 109 3.505386 AGGGTTTTGGTTGACATGCATA 58.495 40.909 0.00 0.00 0.00 3.14
109 110 2.328319 AGGGTTTTGGTTGACATGCAT 58.672 42.857 0.00 0.00 0.00 3.96
110 111 1.786937 AGGGTTTTGGTTGACATGCA 58.213 45.000 0.00 0.00 0.00 3.96
111 112 2.754472 GAAGGGTTTTGGTTGACATGC 58.246 47.619 0.00 0.00 0.00 4.06
112 113 3.011949 CGAAGGGTTTTGGTTGACATG 57.988 47.619 0.00 0.00 0.00 3.21
128 129 2.076863 GAACCCATCAAGACACCGAAG 58.923 52.381 0.00 0.00 0.00 3.79
129 130 1.271163 GGAACCCATCAAGACACCGAA 60.271 52.381 0.00 0.00 0.00 4.30
130 131 0.323629 GGAACCCATCAAGACACCGA 59.676 55.000 0.00 0.00 0.00 4.69
131 132 2.854522 GGAACCCATCAAGACACCG 58.145 57.895 0.00 0.00 0.00 4.94
138 139 7.367741 GTCTATTGACGAGGGAACCCATCAA 62.368 48.000 19.15 19.15 41.17 2.57
139 140 5.954223 GTCTATTGACGAGGGAACCCATCA 61.954 50.000 12.70 9.54 41.17 3.07
140 141 3.492829 GTCTATTGACGAGGGAACCCATC 60.493 52.174 12.70 7.17 41.17 3.51
141 142 2.434702 GTCTATTGACGAGGGAACCCAT 59.565 50.000 12.70 0.00 41.17 4.00
142 143 1.829222 GTCTATTGACGAGGGAACCCA 59.171 52.381 12.70 0.00 41.17 4.51
143 144 2.598686 GTCTATTGACGAGGGAACCC 57.401 55.000 0.94 0.94 41.17 4.11
145 146 3.587797 TGTGTCTATTGACGAGGGAAC 57.412 47.619 2.86 0.00 45.70 3.62
146 147 3.613193 CGTTGTGTCTATTGACGAGGGAA 60.613 47.826 2.86 0.00 45.70 3.97
147 148 2.094906 CGTTGTGTCTATTGACGAGGGA 60.095 50.000 2.86 0.00 45.70 4.20
148 149 2.259618 CGTTGTGTCTATTGACGAGGG 58.740 52.381 2.86 0.00 45.70 4.30
149 150 2.942710 ACGTTGTGTCTATTGACGAGG 58.057 47.619 2.86 0.87 45.70 4.63
150 151 3.057739 CGAACGTTGTGTCTATTGACGAG 59.942 47.826 5.00 0.00 45.70 4.18
151 152 2.975193 CGAACGTTGTGTCTATTGACGA 59.025 45.455 5.00 0.00 45.70 4.20
152 153 2.722629 ACGAACGTTGTGTCTATTGACG 59.277 45.455 5.00 0.16 45.70 4.35
153 154 5.811018 TTACGAACGTTGTGTCTATTGAC 57.189 39.130 5.00 0.00 43.20 3.18
154 155 6.421501 ACATTTACGAACGTTGTGTCTATTGA 59.578 34.615 5.00 0.00 0.00 2.57
155 156 6.586751 ACATTTACGAACGTTGTGTCTATTG 58.413 36.000 5.00 5.80 0.00 1.90
156 157 6.774354 ACATTTACGAACGTTGTGTCTATT 57.226 33.333 5.00 0.00 0.00 1.73
157 158 6.421501 TCAACATTTACGAACGTTGTGTCTAT 59.578 34.615 5.00 0.00 39.72 1.98
158 159 5.747675 TCAACATTTACGAACGTTGTGTCTA 59.252 36.000 5.00 0.00 39.72 2.59
159 160 4.567558 TCAACATTTACGAACGTTGTGTCT 59.432 37.500 5.00 0.00 39.72 3.41
160 161 4.824301 TCAACATTTACGAACGTTGTGTC 58.176 39.130 5.00 0.00 39.72 3.67
161 162 4.861389 TCAACATTTACGAACGTTGTGT 57.139 36.364 5.00 6.78 39.72 3.72
162 163 5.436410 TCATCAACATTTACGAACGTTGTG 58.564 37.500 5.00 0.00 39.72 3.33
163 164 5.660629 TCATCAACATTTACGAACGTTGT 57.339 34.783 5.00 7.08 39.72 3.32
164 165 5.002468 GCATCATCAACATTTACGAACGTTG 59.998 40.000 5.00 0.24 40.03 4.10
165 166 5.086058 GCATCATCAACATTTACGAACGTT 58.914 37.500 0.00 0.00 0.00 3.99
166 167 4.153296 TGCATCATCAACATTTACGAACGT 59.847 37.500 5.03 5.03 0.00 3.99
167 168 4.646960 TGCATCATCAACATTTACGAACG 58.353 39.130 0.00 0.00 0.00 3.95
168 169 8.786937 ATAATGCATCATCAACATTTACGAAC 57.213 30.769 0.00 0.00 35.68 3.95
169 170 9.800433 AAATAATGCATCATCAACATTTACGAA 57.200 25.926 0.00 0.00 35.68 3.85
170 171 9.449550 GAAATAATGCATCATCAACATTTACGA 57.550 29.630 0.00 0.00 35.68 3.43
171 172 9.235537 TGAAATAATGCATCATCAACATTTACG 57.764 29.630 0.00 0.00 35.68 3.18
174 175 9.878667 TTCTGAAATAATGCATCATCAACATTT 57.121 25.926 0.00 0.00 35.68 2.32
176 177 9.476202 CATTCTGAAATAATGCATCATCAACAT 57.524 29.630 0.00 0.00 0.00 2.71
177 178 8.865590 CATTCTGAAATAATGCATCATCAACA 57.134 30.769 0.00 0.00 0.00 3.33
188 189 2.960266 CGTCGCGCATTCTGAAATAATG 59.040 45.455 8.75 0.00 37.39 1.90
189 190 2.032894 CCGTCGCGCATTCTGAAATAAT 60.033 45.455 8.75 0.00 0.00 1.28
190 191 1.326245 CCGTCGCGCATTCTGAAATAA 59.674 47.619 8.75 0.00 0.00 1.40
191 192 0.927537 CCGTCGCGCATTCTGAAATA 59.072 50.000 8.75 0.00 0.00 1.40
192 193 0.739462 TCCGTCGCGCATTCTGAAAT 60.739 50.000 8.75 0.00 0.00 2.17
193 194 0.739462 ATCCGTCGCGCATTCTGAAA 60.739 50.000 8.75 0.00 0.00 2.69
194 195 1.153647 ATCCGTCGCGCATTCTGAA 60.154 52.632 8.75 0.00 0.00 3.02
195 196 1.878069 CATCCGTCGCGCATTCTGA 60.878 57.895 8.75 0.00 0.00 3.27
196 197 1.815212 CTCATCCGTCGCGCATTCTG 61.815 60.000 8.75 0.00 0.00 3.02
197 198 1.589993 CTCATCCGTCGCGCATTCT 60.590 57.895 8.75 0.00 0.00 2.40
198 199 1.543941 CTCTCATCCGTCGCGCATTC 61.544 60.000 8.75 0.00 0.00 2.67
199 200 1.589993 CTCTCATCCGTCGCGCATT 60.590 57.895 8.75 0.00 0.00 3.56
200 201 2.026734 CTCTCATCCGTCGCGCAT 59.973 61.111 8.75 0.00 0.00 4.73
201 202 4.193334 CCTCTCATCCGTCGCGCA 62.193 66.667 8.75 0.00 0.00 6.09
202 203 4.933064 CCCTCTCATCCGTCGCGC 62.933 72.222 0.00 0.00 0.00 6.86
203 204 4.271816 CCCCTCTCATCCGTCGCG 62.272 72.222 0.00 0.00 0.00 5.87
204 205 3.140225 GACCCCTCTCATCCGTCGC 62.140 68.421 0.00 0.00 0.00 5.19
205 206 1.320344 TTGACCCCTCTCATCCGTCG 61.320 60.000 0.00 0.00 0.00 5.12
206 207 0.461961 CTTGACCCCTCTCATCCGTC 59.538 60.000 0.00 0.00 0.00 4.79
207 208 0.978146 CCTTGACCCCTCTCATCCGT 60.978 60.000 0.00 0.00 0.00 4.69
208 209 1.690219 CCCTTGACCCCTCTCATCCG 61.690 65.000 0.00 0.00 0.00 4.18
209 210 0.326618 TCCCTTGACCCCTCTCATCC 60.327 60.000 0.00 0.00 0.00 3.51
210 211 0.833949 GTCCCTTGACCCCTCTCATC 59.166 60.000 0.00 0.00 35.34 2.92
211 212 0.119155 TGTCCCTTGACCCCTCTCAT 59.881 55.000 0.00 0.00 41.01 2.90
212 213 0.545309 CTGTCCCTTGACCCCTCTCA 60.545 60.000 0.00 0.00 41.01 3.27
213 214 0.252284 TCTGTCCCTTGACCCCTCTC 60.252 60.000 0.00 0.00 41.01 3.20
214 215 0.252467 CTCTGTCCCTTGACCCCTCT 60.252 60.000 0.00 0.00 41.01 3.69
215 216 1.904990 GCTCTGTCCCTTGACCCCTC 61.905 65.000 0.00 0.00 41.01 4.30
216 217 1.920835 GCTCTGTCCCTTGACCCCT 60.921 63.158 0.00 0.00 41.01 4.79
217 218 2.671682 GCTCTGTCCCTTGACCCC 59.328 66.667 0.00 0.00 41.01 4.95
218 219 2.266055 CGCTCTGTCCCTTGACCC 59.734 66.667 0.00 0.00 41.01 4.46
219 220 2.435059 GCGCTCTGTCCCTTGACC 60.435 66.667 0.00 0.00 41.01 4.02
220 221 0.674895 AATGCGCTCTGTCCCTTGAC 60.675 55.000 9.73 0.00 42.12 3.18
221 222 0.391661 GAATGCGCTCTGTCCCTTGA 60.392 55.000 9.73 0.00 0.00 3.02
222 223 0.674581 TGAATGCGCTCTGTCCCTTG 60.675 55.000 9.73 0.00 0.00 3.61
223 224 0.392193 CTGAATGCGCTCTGTCCCTT 60.392 55.000 9.73 0.00 0.00 3.95
224 225 1.220206 CTGAATGCGCTCTGTCCCT 59.780 57.895 9.73 0.00 0.00 4.20
225 226 1.817099 CCTGAATGCGCTCTGTCCC 60.817 63.158 9.73 0.00 0.00 4.46
226 227 0.809241 CTCCTGAATGCGCTCTGTCC 60.809 60.000 9.73 0.00 0.00 4.02
227 228 0.809241 CCTCCTGAATGCGCTCTGTC 60.809 60.000 9.73 0.79 0.00 3.51
228 229 1.220206 CCTCCTGAATGCGCTCTGT 59.780 57.895 9.73 0.00 0.00 3.41
229 230 0.392193 AACCTCCTGAATGCGCTCTG 60.392 55.000 9.73 2.47 0.00 3.35
230 231 1.134670 GTAACCTCCTGAATGCGCTCT 60.135 52.381 9.73 0.00 0.00 4.09
231 232 1.291132 GTAACCTCCTGAATGCGCTC 58.709 55.000 9.73 0.00 0.00 5.03
232 233 0.107654 GGTAACCTCCTGAATGCGCT 60.108 55.000 9.73 0.00 0.00 5.92
233 234 0.392461 TGGTAACCTCCTGAATGCGC 60.392 55.000 0.00 0.00 0.00 6.09
234 235 2.213499 GATGGTAACCTCCTGAATGCG 58.787 52.381 0.00 0.00 0.00 4.73
235 236 2.576615 GGATGGTAACCTCCTGAATGC 58.423 52.381 0.00 0.00 46.93 3.56
243 244 3.181464 GCTAGTTCTGGGATGGTAACCTC 60.181 52.174 0.00 0.00 0.00 3.85
244 245 2.772515 GCTAGTTCTGGGATGGTAACCT 59.227 50.000 0.00 0.00 0.00 3.50
245 246 2.158798 GGCTAGTTCTGGGATGGTAACC 60.159 54.545 0.00 0.00 0.00 2.85
246 247 2.483188 CGGCTAGTTCTGGGATGGTAAC 60.483 54.545 0.00 0.00 0.00 2.50
247 248 1.760613 CGGCTAGTTCTGGGATGGTAA 59.239 52.381 0.00 0.00 0.00 2.85
248 249 1.063492 TCGGCTAGTTCTGGGATGGTA 60.063 52.381 0.00 0.00 0.00 3.25
249 250 0.325296 TCGGCTAGTTCTGGGATGGT 60.325 55.000 0.00 0.00 0.00 3.55
250 251 0.390860 CTCGGCTAGTTCTGGGATGG 59.609 60.000 0.00 0.00 0.00 3.51
251 252 0.390860 CCTCGGCTAGTTCTGGGATG 59.609 60.000 0.00 0.00 0.00 3.51
252 253 1.403687 GCCTCGGCTAGTTCTGGGAT 61.404 60.000 0.00 0.00 38.26 3.85
253 254 2.058595 GCCTCGGCTAGTTCTGGGA 61.059 63.158 0.00 0.00 38.26 4.37
254 255 2.359169 TGCCTCGGCTAGTTCTGGG 61.359 63.158 9.65 0.00 42.51 4.45
255 256 1.153549 GTGCCTCGGCTAGTTCTGG 60.154 63.158 9.65 0.00 42.51 3.86
256 257 1.066303 CTAGTGCCTCGGCTAGTTCTG 59.934 57.143 9.65 0.00 42.51 3.02
257 258 1.394618 CTAGTGCCTCGGCTAGTTCT 58.605 55.000 9.65 3.18 42.51 3.01
258 259 0.249114 GCTAGTGCCTCGGCTAGTTC 60.249 60.000 9.65 0.00 42.51 3.01
259 260 1.817209 GCTAGTGCCTCGGCTAGTT 59.183 57.895 9.65 0.00 42.51 2.24
260 261 2.482333 CGCTAGTGCCTCGGCTAGT 61.482 63.158 9.65 1.80 42.51 2.57
261 262 2.333225 CGCTAGTGCCTCGGCTAG 59.667 66.667 9.65 4.83 42.51 3.42
262 263 3.900892 GCGCTAGTGCCTCGGCTA 61.901 66.667 17.70 0.00 42.51 3.93
264 265 4.821589 AAGCGCTAGTGCCTCGGC 62.822 66.667 24.25 0.00 42.35 5.54
265 266 2.583593 GAAGCGCTAGTGCCTCGG 60.584 66.667 24.25 0.00 35.36 4.63
266 267 2.951745 CGAAGCGCTAGTGCCTCG 60.952 66.667 28.76 28.76 35.36 4.63
267 268 1.874466 GTCGAAGCGCTAGTGCCTC 60.874 63.158 24.25 19.66 35.36 4.70
268 269 1.949847 ATGTCGAAGCGCTAGTGCCT 61.950 55.000 24.25 12.38 35.36 4.75
269 270 1.519455 ATGTCGAAGCGCTAGTGCC 60.519 57.895 24.25 9.44 35.36 5.01
270 271 1.078759 ACATGTCGAAGCGCTAGTGC 61.079 55.000 20.73 20.73 0.00 4.40
271 272 0.917259 GACATGTCGAAGCGCTAGTG 59.083 55.000 12.05 3.27 0.00 2.74
272 273 3.330766 GACATGTCGAAGCGCTAGT 57.669 52.632 12.05 0.00 0.00 2.57
283 284 1.989165 GAGTGAGAGCAACGACATGTC 59.011 52.381 16.21 16.21 0.00 3.06
284 285 1.667177 CGAGTGAGAGCAACGACATGT 60.667 52.381 0.00 0.00 0.00 3.21
285 286 0.987715 CGAGTGAGAGCAACGACATG 59.012 55.000 0.00 0.00 0.00 3.21
286 287 0.598562 ACGAGTGAGAGCAACGACAT 59.401 50.000 0.00 0.00 32.88 3.06
287 288 0.040336 GACGAGTGAGAGCAACGACA 60.040 55.000 0.00 0.00 32.88 4.35
288 289 0.040336 TGACGAGTGAGAGCAACGAC 60.040 55.000 0.00 0.00 32.88 4.34
289 290 0.666374 TTGACGAGTGAGAGCAACGA 59.334 50.000 0.00 0.00 32.88 3.85
290 291 1.056103 CTTGACGAGTGAGAGCAACG 58.944 55.000 0.00 0.00 34.09 4.10
291 292 2.423926 TCTTGACGAGTGAGAGCAAC 57.576 50.000 0.00 0.00 0.00 4.17
292 293 2.288457 CCTTCTTGACGAGTGAGAGCAA 60.288 50.000 0.00 0.00 0.00 3.91
293 294 1.270826 CCTTCTTGACGAGTGAGAGCA 59.729 52.381 0.00 0.00 0.00 4.26
294 295 1.271102 ACCTTCTTGACGAGTGAGAGC 59.729 52.381 0.00 0.00 0.00 4.09
295 296 3.651803 AACCTTCTTGACGAGTGAGAG 57.348 47.619 0.00 0.00 0.00 3.20
296 297 4.402056 AAAACCTTCTTGACGAGTGAGA 57.598 40.909 0.00 0.00 0.00 3.27
317 318 3.949113 ACCTTCTTGACGCCACTTAAAAA 59.051 39.130 0.00 0.00 0.00 1.94
318 319 3.547746 ACCTTCTTGACGCCACTTAAAA 58.452 40.909 0.00 0.00 0.00 1.52
319 320 3.202829 ACCTTCTTGACGCCACTTAAA 57.797 42.857 0.00 0.00 0.00 1.52
320 321 2.922740 ACCTTCTTGACGCCACTTAA 57.077 45.000 0.00 0.00 0.00 1.85
321 322 2.922740 AACCTTCTTGACGCCACTTA 57.077 45.000 0.00 0.00 0.00 2.24
322 323 2.052782 AAACCTTCTTGACGCCACTT 57.947 45.000 0.00 0.00 0.00 3.16
323 324 1.947456 GAAAACCTTCTTGACGCCACT 59.053 47.619 0.00 0.00 0.00 4.00
324 325 1.673920 TGAAAACCTTCTTGACGCCAC 59.326 47.619 0.00 0.00 32.33 5.01
325 326 2.045561 TGAAAACCTTCTTGACGCCA 57.954 45.000 0.00 0.00 32.33 5.69
326 327 4.379499 CCTTATGAAAACCTTCTTGACGCC 60.379 45.833 0.00 0.00 32.33 5.68
327 328 4.215613 ACCTTATGAAAACCTTCTTGACGC 59.784 41.667 0.00 0.00 32.33 5.19
332 333 6.490381 GGAGTTGACCTTATGAAAACCTTCTT 59.510 38.462 0.00 0.00 32.33 2.52
353 354 3.571590 AGACAGTCTCAAGTGAAGGAGT 58.428 45.455 0.00 0.00 32.93 3.85
356 357 4.061596 GGAAAGACAGTCTCAAGTGAAGG 58.938 47.826 2.72 0.00 0.00 3.46
365 366 2.223971 TGGACAACGGAAAGACAGTCTC 60.224 50.000 2.72 0.00 0.00 3.36
370 371 2.035961 CTCTCTGGACAACGGAAAGACA 59.964 50.000 0.00 0.00 33.08 3.41
398 399 2.460918 ACGAACAGTCAGTCGTTTGAG 58.539 47.619 0.00 0.00 32.67 3.02
408 409 2.481568 CGGTGACTACTACGAACAGTCA 59.518 50.000 8.92 8.92 44.78 3.41
429 430 4.668576 TGCTCGTCAAAATCTTGATGTC 57.331 40.909 1.02 0.00 45.28 3.06
456 458 8.342634 GCTAACAATGACTAAAGAACAAGACAA 58.657 33.333 0.00 0.00 0.00 3.18
457 459 7.041372 GGCTAACAATGACTAAAGAACAAGACA 60.041 37.037 0.00 0.00 0.00 3.41
521 524 7.756722 CGCAAAATAGAATCACTGGAAGAAAAT 59.243 33.333 0.00 0.00 37.43 1.82
531 534 5.314923 ACATTGCGCAAAATAGAATCACT 57.685 34.783 28.81 2.27 0.00 3.41
559 562 3.565307 AGAGTTTTTCAGATGCAACCCA 58.435 40.909 0.00 0.00 0.00 4.51
562 565 7.915397 TGTTAAAGAGAGTTTTTCAGATGCAAC 59.085 33.333 0.00 0.00 0.00 4.17
637 654 4.401202 TCCACTTTGAGGACCAAGTTTTTC 59.599 41.667 0.00 0.00 35.94 2.29
653 670 7.454380 TGGTCCATTTTCTAATTCATCCACTTT 59.546 33.333 0.00 0.00 0.00 2.66
790 813 2.037136 CCTCCGTGCTTTCAGGCAG 61.037 63.158 0.00 0.00 43.25 4.85
800 823 1.153429 GGTGATGGTACCTCCGTGC 60.153 63.158 14.36 0.00 39.52 5.34
801 824 1.141019 CGGTGATGGTACCTCCGTG 59.859 63.158 14.36 0.00 38.62 4.94
878 908 0.765510 AGAGGTTTTTGGTCGGCTCT 59.234 50.000 0.00 0.00 0.00 4.09
984 1020 1.683011 CCCATTCTTGGACGGCTGATT 60.683 52.381 0.00 0.00 46.92 2.57
993 1030 0.395586 CGGCCATTCCCATTCTTGGA 60.396 55.000 2.24 0.00 46.92 3.53
1052 1092 4.329545 CGGAGGTGGTGTGGTGGG 62.330 72.222 0.00 0.00 0.00 4.61
1070 1110 3.365265 GGTTGTGGCGCTTGGAGG 61.365 66.667 7.64 0.00 0.00 4.30
1085 1125 2.908940 GCTGCTGCTGGTGTTGGT 60.909 61.111 8.53 0.00 36.03 3.67
1089 1129 3.873026 GAGTCGCTGCTGCTGGTGT 62.873 63.158 14.03 0.00 36.97 4.16
1095 1135 1.807573 GTACCTGAGTCGCTGCTGC 60.808 63.158 5.34 5.34 0.00 5.25
1104 1147 1.615424 ATTGGGGGCGTACCTGAGT 60.615 57.895 0.00 0.00 40.03 3.41
1866 1909 2.827190 TCCACCTCGCGCTCGTAT 60.827 61.111 5.56 0.00 36.96 3.06
2635 2678 2.523168 TCACCTGCTCACCGGTCA 60.523 61.111 2.59 0.00 0.00 4.02
2636 2679 2.262915 CTCACCTGCTCACCGGTC 59.737 66.667 2.59 0.00 0.00 4.79
2637 2680 4.008933 GCTCACCTGCTCACCGGT 62.009 66.667 0.00 0.00 0.00 5.28
2638 2681 3.699894 AGCTCACCTGCTCACCGG 61.700 66.667 0.00 0.00 39.34 5.28
2659 2702 3.388703 GAGCTGGGCAGAGGCAGAG 62.389 68.421 0.00 0.00 43.71 3.35
2660 2703 3.397439 GAGCTGGGCAGAGGCAGA 61.397 66.667 0.00 0.00 43.71 4.26
2661 2704 4.486503 GGAGCTGGGCAGAGGCAG 62.487 72.222 0.00 0.00 43.71 4.85
2663 2706 4.173924 GAGGAGCTGGGCAGAGGC 62.174 72.222 0.00 0.00 40.13 4.70
2664 2707 2.365370 AGAGGAGCTGGGCAGAGG 60.365 66.667 0.00 0.00 0.00 3.69
2759 2822 4.438744 GCATACAAAATTCGCAAGCCTACT 60.439 41.667 0.00 0.00 37.18 2.57
2761 2824 3.181491 GGCATACAAAATTCGCAAGCCTA 60.181 43.478 0.00 0.00 36.72 3.93
2763 2826 1.926510 GGCATACAAAATTCGCAAGCC 59.073 47.619 0.00 0.00 37.18 4.35
2808 2871 7.565680 CAACTTAACTTCTACACCAGGGATAT 58.434 38.462 0.00 0.00 0.00 1.63
3046 3178 6.641169 AGATGAGTCGTAGCTGAATATTCA 57.359 37.500 17.07 17.07 35.57 2.57
3047 3179 8.907685 GTTTAGATGAGTCGTAGCTGAATATTC 58.092 37.037 8.60 8.60 0.00 1.75
3048 3180 8.634444 AGTTTAGATGAGTCGTAGCTGAATATT 58.366 33.333 0.00 0.00 0.00 1.28
3049 3181 8.172352 AGTTTAGATGAGTCGTAGCTGAATAT 57.828 34.615 0.00 0.00 0.00 1.28
3050 3182 7.569639 AGTTTAGATGAGTCGTAGCTGAATA 57.430 36.000 0.00 0.00 0.00 1.75
3051 3183 6.458232 AGTTTAGATGAGTCGTAGCTGAAT 57.542 37.500 0.00 0.00 0.00 2.57
3052 3184 5.899120 AGTTTAGATGAGTCGTAGCTGAA 57.101 39.130 0.00 0.00 0.00 3.02
3053 3185 5.899120 AAGTTTAGATGAGTCGTAGCTGA 57.101 39.130 0.00 0.00 0.00 4.26
3054 3186 6.809196 AGAAAAGTTTAGATGAGTCGTAGCTG 59.191 38.462 0.00 0.00 0.00 4.24
3055 3187 6.809196 CAGAAAAGTTTAGATGAGTCGTAGCT 59.191 38.462 0.00 0.00 0.00 3.32
3140 3272 8.370940 GTGAACAAGATAGATTCATCCATCCTA 58.629 37.037 0.00 0.00 34.98 2.94
3230 3362 3.090037 CCCTTCTTCAGAGTTCGGACTA 58.910 50.000 0.00 0.00 35.88 2.59
3231 3363 1.896465 CCCTTCTTCAGAGTTCGGACT 59.104 52.381 0.00 0.00 39.32 3.85
3232 3364 1.066787 CCCCTTCTTCAGAGTTCGGAC 60.067 57.143 0.00 0.00 0.00 4.79
3233 3365 1.203137 TCCCCTTCTTCAGAGTTCGGA 60.203 52.381 0.00 0.00 0.00 4.55
3235 3367 1.404851 GCTCCCCTTCTTCAGAGTTCG 60.405 57.143 0.00 0.00 0.00 3.95
3236 3368 1.625818 TGCTCCCCTTCTTCAGAGTTC 59.374 52.381 0.00 0.00 0.00 3.01
3237 3369 1.734655 TGCTCCCCTTCTTCAGAGTT 58.265 50.000 0.00 0.00 0.00 3.01
3238 3370 1.734655 TTGCTCCCCTTCTTCAGAGT 58.265 50.000 0.00 0.00 0.00 3.24
3239 3371 2.641305 CATTGCTCCCCTTCTTCAGAG 58.359 52.381 0.00 0.00 0.00 3.35
3240 3372 1.340405 GCATTGCTCCCCTTCTTCAGA 60.340 52.381 0.16 0.00 0.00 3.27
3241 3373 1.101331 GCATTGCTCCCCTTCTTCAG 58.899 55.000 0.16 0.00 0.00 3.02
3242 3374 0.323725 GGCATTGCTCCCCTTCTTCA 60.324 55.000 8.82 0.00 0.00 3.02
3243 3375 1.379642 CGGCATTGCTCCCCTTCTTC 61.380 60.000 8.82 0.00 0.00 2.87
3244 3376 1.379044 CGGCATTGCTCCCCTTCTT 60.379 57.895 8.82 0.00 0.00 2.52
3245 3377 2.273449 CGGCATTGCTCCCCTTCT 59.727 61.111 8.82 0.00 0.00 2.85
3250 3382 1.523154 TTGAACACGGCATTGCTCCC 61.523 55.000 8.82 0.00 0.00 4.30
3251 3383 0.109597 CTTGAACACGGCATTGCTCC 60.110 55.000 8.82 0.00 0.00 4.70
3283 3415 8.198109 ACTATTGCTATGAGCTTATTATACGGG 58.802 37.037 0.00 0.00 42.97 5.28
3328 3465 2.504681 GCCGGCAGCAATGTTTCG 60.505 61.111 24.80 0.00 42.97 3.46
3345 3483 3.119955 CCACTGTTCATGTGCTGATTCTG 60.120 47.826 0.00 0.00 32.72 3.02
3362 3500 2.093890 TGTATGCTGGCAATTCCACTG 58.906 47.619 0.00 0.00 40.72 3.66
3387 3525 1.365699 GCCGACGAATTATGTGTGGT 58.634 50.000 0.00 0.00 0.00 4.16
3388 3526 0.655733 GGCCGACGAATTATGTGTGG 59.344 55.000 0.00 0.00 0.00 4.17
3431 3590 7.642586 CAGGTTCTTACGTTTACAAAAGAAAGG 59.357 37.037 9.81 1.40 39.08 3.11
3435 3594 7.267128 TCTCAGGTTCTTACGTTTACAAAAGA 58.733 34.615 0.00 0.00 0.00 2.52
3454 3613 5.308825 TCTTGCTTTCCTTTACTTCTCAGG 58.691 41.667 0.00 0.00 0.00 3.86
3509 3668 4.216687 GGGGTCATCTCGACTACTTCTATG 59.783 50.000 0.00 0.00 44.70 2.23
3592 3751 1.886777 GCAGCTTCCTCATCTCGGC 60.887 63.158 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.