Multiple sequence alignment - TraesCS1D01G268500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G268500 chr1D 100.000 3101 0 0 1 3101 364031368 364028268 0.000000e+00 5727.0
1 TraesCS1D01G268500 chr1D 77.336 578 71 28 2297 2844 431424170 431423623 1.410000e-73 287.0
2 TraesCS1D01G268500 chr1B 92.593 1350 55 18 833 2144 487427138 487425796 0.000000e+00 1897.0
3 TraesCS1D01G268500 chr1B 92.674 546 28 7 242 786 487427681 487427147 0.000000e+00 776.0
4 TraesCS1D01G268500 chr1B 81.773 203 18 9 5 190 487427883 487427683 5.360000e-33 152.0
5 TraesCS1D01G268500 chr1B 90.411 73 4 3 2382 2452 492864696 492864625 3.290000e-15 93.5
6 TraesCS1D01G268500 chr1A 95.303 1022 35 6 833 1846 463248397 463247381 0.000000e+00 1609.0
7 TraesCS1D01G268500 chr1A 93.923 362 12 7 1930 2286 463247002 463246646 3.520000e-149 538.0
8 TraesCS1D01G268500 chr1A 91.429 385 22 5 404 782 463248790 463248411 4.580000e-143 518.0
9 TraesCS1D01G268500 chr1A 93.506 154 10 0 186 339 463249481 463249328 2.410000e-56 230.0
10 TraesCS1D01G268500 chr4D 78.045 583 74 34 2294 2854 422200093 422200643 4.990000e-83 318.0
11 TraesCS1D01G268500 chr7D 78.163 577 66 27 2297 2844 587289165 587288620 2.320000e-81 313.0
12 TraesCS1D01G268500 chr7D 88.393 112 10 2 2302 2411 597030218 597030108 6.980000e-27 132.0
13 TraesCS1D01G268500 chr7A 86.851 289 23 11 2297 2580 130383054 130382776 3.000000e-80 309.0
14 TraesCS1D01G268500 chr2D 79.369 412 46 24 2549 2946 43797561 43797175 1.430000e-63 254.0
15 TraesCS1D01G268500 chr2D 79.126 412 44 25 2549 2946 440329255 440329638 2.390000e-61 246.0
16 TraesCS1D01G268500 chr5D 78.883 412 48 24 2549 2946 36210751 36210365 3.090000e-60 243.0
17 TraesCS1D01G268500 chr5D 90.426 94 8 1 2302 2395 378958340 378958432 4.200000e-24 122.0
18 TraesCS1D01G268500 chr6D 88.393 112 10 2 2302 2411 310389462 310389572 6.980000e-27 132.0
19 TraesCS1D01G268500 chr6D 77.206 136 23 7 2302 2433 446950085 446950216 4.290000e-09 73.1
20 TraesCS1D01G268500 chr2A 85.246 122 14 3 2294 2412 705552321 705552441 4.200000e-24 122.0
21 TraesCS1D01G268500 chr3A 80.282 142 18 9 2297 2433 12593061 12592925 7.080000e-17 99.0
22 TraesCS1D01G268500 chr3A 80.282 142 18 9 2297 2433 12608690 12608554 7.080000e-17 99.0
23 TraesCS1D01G268500 chr3A 87.931 58 6 1 138 194 741622162 741622219 2.000000e-07 67.6
24 TraesCS1D01G268500 chr5A 80.303 132 19 2 2294 2418 16967522 16967653 3.290000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G268500 chr1D 364028268 364031368 3100 True 5727.000000 5727 100.000000 1 3101 1 chr1D.!!$R1 3100
1 TraesCS1D01G268500 chr1D 431423623 431424170 547 True 287.000000 287 77.336000 2297 2844 1 chr1D.!!$R2 547
2 TraesCS1D01G268500 chr1B 487425796 487427883 2087 True 941.666667 1897 89.013333 5 2144 3 chr1B.!!$R2 2139
3 TraesCS1D01G268500 chr1A 463246646 463249481 2835 True 723.750000 1609 93.540250 186 2286 4 chr1A.!!$R1 2100
4 TraesCS1D01G268500 chr4D 422200093 422200643 550 False 318.000000 318 78.045000 2294 2854 1 chr4D.!!$F1 560
5 TraesCS1D01G268500 chr7D 587288620 587289165 545 True 313.000000 313 78.163000 2297 2844 1 chr7D.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 1487 0.040058 ATTGGATCTTGCACCTGCCA 59.96 50.0 0.0 0.0 41.18 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2558 3396 0.036388 TGGGCGTCTCCAGATTTGTC 60.036 55.0 0.0 0.0 36.21 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.295602 GGGCGTTGGTCCTTAGGGA 61.296 63.158 0.00 0.00 39.70 4.20
52 53 3.002791 GGACACGCATGAAGATTTCTCA 58.997 45.455 0.00 0.00 0.00 3.27
53 54 3.181516 GGACACGCATGAAGATTTCTCAC 60.182 47.826 0.00 0.00 0.00 3.51
76 77 1.126846 GTCATCGACAAAGTCAAGCCG 59.873 52.381 0.00 0.00 32.09 5.52
83 84 1.302832 AAAGTCAAGCCGGCTCTGG 60.303 57.895 32.93 22.23 0.00 3.86
88 89 1.192146 TCAAGCCGGCTCTGGTAAGT 61.192 55.000 32.93 8.64 0.00 2.24
90 91 1.481056 AAGCCGGCTCTGGTAAGTGT 61.481 55.000 32.93 6.80 0.00 3.55
92 93 1.079127 CCGGCTCTGGTAAGTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
93 94 1.741770 CGGCTCTGGTAAGTGTGGC 60.742 63.158 0.00 0.00 0.00 5.01
94 95 1.377333 GGCTCTGGTAAGTGTGGCC 60.377 63.158 0.00 0.00 0.00 5.36
95 96 1.374947 GCTCTGGTAAGTGTGGCCA 59.625 57.895 0.00 0.00 0.00 5.36
97 98 0.396435 CTCTGGTAAGTGTGGCCACA 59.604 55.000 34.74 34.74 44.39 4.17
98 99 0.396435 TCTGGTAAGTGTGGCCACAG 59.604 55.000 38.55 24.03 44.39 3.66
99 100 0.108585 CTGGTAAGTGTGGCCACAGT 59.891 55.000 38.55 37.08 46.18 3.55
101 102 0.889186 GGTAAGTGTGGCCACAGTGG 60.889 60.000 40.07 16.16 43.66 4.00
146 164 6.380274 AGTGATTTAGGAACCTCTCGATGTAA 59.620 38.462 0.00 0.00 0.00 2.41
233 251 5.068591 TGCGATTGTATGAGTGGTATGTACT 59.931 40.000 0.00 0.00 0.00 2.73
235 253 6.504398 CGATTGTATGAGTGGTATGTACTGT 58.496 40.000 0.00 0.00 0.00 3.55
342 391 3.842428 CGTTCGAATCAAACAAGATGCAG 59.158 43.478 0.00 0.00 0.00 4.41
344 393 2.162208 TCGAATCAAACAAGATGCAGGC 59.838 45.455 0.00 0.00 0.00 4.85
353 402 3.921677 ACAAGATGCAGGCATTCTTTTG 58.078 40.909 8.34 12.33 36.70 2.44
424 915 1.271379 TGTAAACAAGCCCTGAGCCTC 60.271 52.381 0.00 0.00 45.47 4.70
429 920 0.959372 CAAGCCCTGAGCCTCAACAG 60.959 60.000 0.00 0.00 45.47 3.16
447 938 8.627487 CTCAACAGAGTTTGAGTGATCTATAC 57.373 38.462 4.94 0.00 45.12 1.47
448 939 8.354711 TCAACAGAGTTTGAGTGATCTATACT 57.645 34.615 0.00 0.00 31.68 2.12
449 940 8.462811 TCAACAGAGTTTGAGTGATCTATACTC 58.537 37.037 5.02 5.02 43.73 2.59
450 941 7.341445 ACAGAGTTTGAGTGATCTATACTCC 57.659 40.000 8.71 0.00 43.00 3.85
460 951 8.424918 TGAGTGATCTATACTCCATCTTTTTCC 58.575 37.037 8.71 0.00 43.00 3.13
463 954 7.875554 GTGATCTATACTCCATCTTTTTCCTCC 59.124 40.741 0.00 0.00 0.00 4.30
490 981 1.886542 GCGGGGAAAGTTTGAGTGATT 59.113 47.619 0.00 0.00 0.00 2.57
521 1012 8.335356 TCGCTTATAGAGAATGCATAAAAACAC 58.665 33.333 0.00 0.00 0.00 3.32
534 1025 5.681105 GCATAAAAACACCATATAGTGCACG 59.319 40.000 12.01 0.00 41.67 5.34
548 1039 2.298446 AGTGCACGATATGGGATCTCTG 59.702 50.000 12.01 0.00 0.00 3.35
615 1107 5.763204 TCAGCAATTTTCTAGAAGTTCCGTT 59.237 36.000 5.12 0.00 0.00 4.44
693 1191 2.301296 AGTCACCATGAACCTGTCTCTG 59.699 50.000 0.00 0.00 0.00 3.35
769 1268 1.166989 TACACGCACGTATCCAGACA 58.833 50.000 0.00 0.00 0.00 3.41
782 1281 2.047061 TCCAGACACTGTGGTAAGCTT 58.953 47.619 13.09 3.48 36.37 3.74
786 1285 4.498009 CCAGACACTGTGGTAAGCTTTTTG 60.498 45.833 13.09 0.00 0.00 2.44
788 1287 4.096382 AGACACTGTGGTAAGCTTTTTGTG 59.904 41.667 13.09 8.47 0.00 3.33
790 1289 4.104776 CACTGTGGTAAGCTTTTTGTGTG 58.895 43.478 3.20 4.16 0.00 3.82
792 1291 4.103365 TGTGGTAAGCTTTTTGTGTGTG 57.897 40.909 3.20 0.00 0.00 3.82
795 1294 3.508012 TGGTAAGCTTTTTGTGTGTGTGT 59.492 39.130 3.20 0.00 0.00 3.72
796 1295 3.857093 GGTAAGCTTTTTGTGTGTGTGTG 59.143 43.478 3.20 0.00 0.00 3.82
797 1296 3.658757 AAGCTTTTTGTGTGTGTGTGT 57.341 38.095 0.00 0.00 0.00 3.72
798 1297 2.945278 AGCTTTTTGTGTGTGTGTGTG 58.055 42.857 0.00 0.00 0.00 3.82
799 1298 2.295909 AGCTTTTTGTGTGTGTGTGTGT 59.704 40.909 0.00 0.00 0.00 3.72
800 1299 2.408032 GCTTTTTGTGTGTGTGTGTGTG 59.592 45.455 0.00 0.00 0.00 3.82
801 1300 3.637432 CTTTTTGTGTGTGTGTGTGTGT 58.363 40.909 0.00 0.00 0.00 3.72
802 1301 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
803 1302 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
804 1303 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
805 1304 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
806 1305 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
807 1306 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
808 1307 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
809 1308 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
810 1309 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
811 1310 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
812 1311 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
813 1312 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
814 1313 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
815 1314 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
816 1315 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
817 1316 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
818 1317 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
819 1318 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
820 1319 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
821 1320 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
822 1321 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
823 1322 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
824 1323 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
825 1324 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
826 1325 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
827 1326 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
828 1327 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
829 1328 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
830 1329 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
831 1330 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
905 1404 3.410631 TGAAGGCGTAACATCAAAGGA 57.589 42.857 0.00 0.00 0.00 3.36
907 1406 4.331968 TGAAGGCGTAACATCAAAGGATT 58.668 39.130 0.00 0.00 0.00 3.01
950 1457 0.321475 AGTGCAAGAGAGAGCAAGCC 60.321 55.000 0.00 0.00 43.20 4.35
972 1479 3.932459 CAAGGCGATTGGATCTTGC 57.068 52.632 0.00 0.00 35.08 4.01
973 1480 1.097232 CAAGGCGATTGGATCTTGCA 58.903 50.000 0.00 0.00 35.08 4.08
974 1481 1.098050 AAGGCGATTGGATCTTGCAC 58.902 50.000 0.00 0.00 0.00 4.57
976 1483 0.749454 GGCGATTGGATCTTGCACCT 60.749 55.000 0.00 0.00 0.00 4.00
977 1484 0.379669 GCGATTGGATCTTGCACCTG 59.620 55.000 0.00 0.00 0.00 4.00
978 1485 0.379669 CGATTGGATCTTGCACCTGC 59.620 55.000 0.00 0.00 42.50 4.85
980 1487 0.040058 ATTGGATCTTGCACCTGCCA 59.960 50.000 0.00 0.00 41.18 4.92
981 1488 0.178967 TTGGATCTTGCACCTGCCAA 60.179 50.000 6.26 6.26 41.18 4.52
991 1498 1.072505 ACCTGCCAACAAGGTACGG 59.927 57.895 0.00 0.00 40.61 4.02
1847 2373 4.968719 TCAAGCAGATCCAAGGTTAGGATA 59.031 41.667 0.00 0.00 45.65 2.59
1848 2374 4.965200 AGCAGATCCAAGGTTAGGATAC 57.035 45.455 0.00 0.00 45.65 2.24
1876 2402 6.846283 GCTTTATACAGTACATTCATTCACGC 59.154 38.462 0.00 0.00 0.00 5.34
1877 2403 6.505039 TTATACAGTACATTCATTCACGCG 57.495 37.500 3.53 3.53 0.00 6.01
1880 2406 1.206132 AGTACATTCATTCACGCGGGA 59.794 47.619 7.15 7.15 0.00 5.14
1881 2407 2.158957 AGTACATTCATTCACGCGGGAT 60.159 45.455 14.07 0.00 0.00 3.85
1882 2408 2.613026 ACATTCATTCACGCGGGATA 57.387 45.000 14.07 3.35 0.00 2.59
1885 2415 0.173935 TTCATTCACGCGGGATACGT 59.826 50.000 14.07 0.00 46.42 3.57
1890 2420 1.220529 TCACGCGGGATACGTACTAG 58.779 55.000 7.15 0.00 42.96 2.57
1896 2430 0.877743 GGGATACGTACTAGGCCGTC 59.122 60.000 11.55 0.63 38.43 4.79
1901 2435 0.106819 ACGTACTAGGCCGTCCTGAT 60.107 55.000 0.00 0.00 44.08 2.90
1904 2438 3.008375 ACGTACTAGGCCGTCCTGATATA 59.992 47.826 0.00 0.00 44.08 0.86
1906 2440 4.272991 CGTACTAGGCCGTCCTGATATATC 59.727 50.000 5.73 5.73 44.08 1.63
1911 2445 5.505181 AGGCCGTCCTGATATATCAATTT 57.495 39.130 16.08 0.00 42.34 1.82
1912 2732 6.620877 AGGCCGTCCTGATATATCAATTTA 57.379 37.500 16.08 0.25 42.34 1.40
1941 2764 0.611062 ACACTACTACAGAGGCGCCA 60.611 55.000 31.54 6.15 0.00 5.69
2094 2917 2.724690 CGACGACTTACTCAACAGGTTG 59.275 50.000 5.81 5.81 41.71 3.77
2097 2920 2.476619 CGACTTACTCAACAGGTTGCTG 59.523 50.000 7.28 5.58 40.24 4.41
2108 2931 3.012518 ACAGGTTGCTGTGAAGATATGC 58.987 45.455 0.00 0.00 36.05 3.14
2125 2948 3.681593 ATGCCTGCTGATCTATCTGTC 57.318 47.619 0.00 0.00 0.00 3.51
2141 2964 2.082231 CTGTCTTTGAGGCCAGTGATG 58.918 52.381 5.01 0.00 0.00 3.07
2144 2967 1.003580 TCTTTGAGGCCAGTGATGGTC 59.996 52.381 5.01 0.00 0.00 4.02
2145 2968 0.770499 TTTGAGGCCAGTGATGGTCA 59.230 50.000 5.01 0.00 35.66 4.02
2146 2969 0.325933 TTGAGGCCAGTGATGGTCAG 59.674 55.000 5.01 0.00 35.66 3.51
2147 2970 0.837691 TGAGGCCAGTGATGGTCAGT 60.838 55.000 5.01 0.00 35.66 3.41
2173 2996 0.746563 ACGGACTGTGTGTGTTTGGG 60.747 55.000 0.00 0.00 0.00 4.12
2241 3068 3.149005 TGTTGGTTTGTATGTCCTCCC 57.851 47.619 0.00 0.00 0.00 4.30
2261 3088 7.295672 TCCTCCCTCATGGATGAATAAATTACT 59.704 37.037 0.00 0.00 44.07 2.24
2271 3098 6.371825 GGATGAATAAATTACTCGGGATGTCC 59.628 42.308 0.00 0.00 0.00 4.02
2272 3099 6.494666 TGAATAAATTACTCGGGATGTCCT 57.505 37.500 0.00 0.00 35.95 3.85
2275 3102 8.487848 TGAATAAATTACTCGGGATGTCCTTTA 58.512 33.333 0.00 0.00 35.95 1.85
2282 3109 5.816682 ACTCGGGATGTCCTTTAGATTTTT 58.183 37.500 0.00 0.00 35.95 1.94
2328 3155 5.598005 ACAGTCAAATTTCCTGACCAATCAA 59.402 36.000 17.23 0.00 43.53 2.57
2329 3156 5.922544 CAGTCAAATTTCCTGACCAATCAAC 59.077 40.000 8.16 0.00 43.53 3.18
2338 3165 5.380900 TCCTGACCAATCAACACATTACAA 58.619 37.500 0.00 0.00 33.30 2.41
2344 3171 7.446931 TGACCAATCAACACATTACAACTGTAT 59.553 33.333 0.00 0.00 0.00 2.29
2359 3186 5.648092 ACAACTGTATTAGCAGGGAAATCAC 59.352 40.000 0.00 0.00 40.59 3.06
2360 3187 5.700402 ACTGTATTAGCAGGGAAATCACT 57.300 39.130 0.00 0.00 40.59 3.41
2362 3189 6.821388 ACTGTATTAGCAGGGAAATCACTAG 58.179 40.000 0.00 0.00 40.59 2.57
2398 3225 1.338011 CGCCTAAACGGGTCAGGTAAA 60.338 52.381 0.00 0.00 0.00 2.01
2403 3230 2.484742 AACGGGTCAGGTAAACATCC 57.515 50.000 0.00 0.00 0.00 3.51
2404 3231 0.616891 ACGGGTCAGGTAAACATCCC 59.383 55.000 0.00 0.00 0.00 3.85
2413 3240 1.456296 GTAAACATCCCACCCGGTTC 58.544 55.000 0.00 0.00 0.00 3.62
2418 3245 3.918328 ATCCCACCCGGTTCGTCCT 62.918 63.158 0.00 0.00 0.00 3.85
2420 3247 4.388499 CCACCCGGTTCGTCCTGG 62.388 72.222 0.00 7.88 44.72 4.45
2426 3253 1.068417 CGGTTCGTCCTGGACAACA 59.932 57.895 27.58 12.77 30.88 3.33
2429 3256 1.332686 GGTTCGTCCTGGACAACAAAC 59.667 52.381 27.58 22.46 30.88 2.93
2452 3279 0.753262 CCTCCTGATTAGGGACCACG 59.247 60.000 3.28 0.00 44.70 4.94
2454 3281 2.108168 CTCCTGATTAGGGACCACGAA 58.892 52.381 3.28 0.00 44.70 3.85
2456 3283 2.907696 TCCTGATTAGGGACCACGAAAA 59.092 45.455 3.28 0.00 44.70 2.29
2458 3285 3.558321 CCTGATTAGGGACCACGAAAACA 60.558 47.826 0.00 0.00 40.63 2.83
2459 3286 3.404899 TGATTAGGGACCACGAAAACAC 58.595 45.455 0.00 0.00 0.00 3.32
2460 3287 3.181453 TGATTAGGGACCACGAAAACACA 60.181 43.478 0.00 0.00 0.00 3.72
2461 3288 3.495434 TTAGGGACCACGAAAACACAT 57.505 42.857 0.00 0.00 0.00 3.21
2462 3289 1.604604 AGGGACCACGAAAACACATG 58.395 50.000 0.00 0.00 0.00 3.21
2463 3290 0.039527 GGGACCACGAAAACACATGC 60.040 55.000 0.00 0.00 0.00 4.06
2464 3291 0.039527 GGACCACGAAAACACATGCC 60.040 55.000 0.00 0.00 0.00 4.40
2465 3292 0.665835 GACCACGAAAACACATGCCA 59.334 50.000 0.00 0.00 0.00 4.92
2466 3293 1.066303 GACCACGAAAACACATGCCAA 59.934 47.619 0.00 0.00 0.00 4.52
2467 3294 1.202359 ACCACGAAAACACATGCCAAC 60.202 47.619 0.00 0.00 0.00 3.77
2468 3295 1.202348 CCACGAAAACACATGCCAACA 60.202 47.619 0.00 0.00 0.00 3.33
2479 3306 1.262151 CATGCCAACAAAGCTTGCAAC 59.738 47.619 11.85 0.00 0.00 4.17
2480 3307 0.805322 TGCCAACAAAGCTTGCAACG 60.805 50.000 0.00 0.00 0.00 4.10
2491 3318 4.921847 TGCAACGCACGCAAAGGC 62.922 61.111 0.00 0.00 36.17 4.35
2493 3320 4.263209 CAACGCACGCAAAGGCCA 62.263 61.111 5.01 0.00 36.38 5.36
2510 3347 0.756294 CCAAACCCCCTCCACAAAAC 59.244 55.000 0.00 0.00 0.00 2.43
2521 3359 2.203437 ACAAAACACGCCCCTCCC 60.203 61.111 0.00 0.00 0.00 4.30
2551 3389 4.950475 CCACTAGACAGATCTCACCTAACA 59.050 45.833 0.00 0.00 36.29 2.41
2554 3392 3.370104 AGACAGATCTCACCTAACAGGG 58.630 50.000 0.00 0.00 40.58 4.45
2555 3393 1.834263 ACAGATCTCACCTAACAGGGC 59.166 52.381 0.00 0.00 40.58 5.19
2556 3394 2.114616 CAGATCTCACCTAACAGGGCT 58.885 52.381 0.00 0.00 40.58 5.19
2557 3395 3.300388 CAGATCTCACCTAACAGGGCTA 58.700 50.000 0.00 0.00 40.58 3.93
2558 3396 3.320541 CAGATCTCACCTAACAGGGCTAG 59.679 52.174 0.00 0.00 40.58 3.42
2559 3397 3.205507 AGATCTCACCTAACAGGGCTAGA 59.794 47.826 0.00 0.00 40.58 2.43
2560 3398 2.736347 TCTCACCTAACAGGGCTAGAC 58.264 52.381 0.00 0.00 40.58 2.59
2561 3399 2.042569 TCTCACCTAACAGGGCTAGACA 59.957 50.000 0.00 0.00 40.58 3.41
2562 3400 2.832129 CTCACCTAACAGGGCTAGACAA 59.168 50.000 0.00 0.00 40.58 3.18
2569 3407 2.551270 ACAGGGCTAGACAAATCTGGA 58.449 47.619 0.00 0.00 35.47 3.86
2580 3418 0.911769 AAATCTGGAGACGCCCATGA 59.088 50.000 0.00 0.00 35.33 3.07
2581 3419 0.911769 AATCTGGAGACGCCCATGAA 59.088 50.000 0.00 0.00 35.33 2.57
2583 3421 0.690192 TCTGGAGACGCCCATGAAAA 59.310 50.000 0.00 0.00 35.33 2.29
2584 3422 1.073125 TCTGGAGACGCCCATGAAAAA 59.927 47.619 0.00 0.00 35.33 1.94
2595 3433 1.098050 CATGAAAAAGGGAGAGGCGG 58.902 55.000 0.00 0.00 0.00 6.13
2626 3479 0.614979 CGGGGAGGAGGAGAAGAACA 60.615 60.000 0.00 0.00 0.00 3.18
2659 3512 1.698874 AAATTGGGAGAGGGGGATGT 58.301 50.000 0.00 0.00 0.00 3.06
2665 3518 0.264955 GGAGAGGGGGATGTACCTGA 59.735 60.000 0.00 0.00 37.18 3.86
2674 3527 2.705658 GGGATGTACCTGATGATCACCA 59.294 50.000 0.00 0.00 38.98 4.17
2675 3528 3.136443 GGGATGTACCTGATGATCACCAA 59.864 47.826 0.00 0.00 38.98 3.67
2676 3529 4.384056 GGATGTACCTGATGATCACCAAG 58.616 47.826 0.00 0.00 35.41 3.61
2682 3535 3.588842 ACCTGATGATCACCAAGAAGGAA 59.411 43.478 0.00 0.00 41.22 3.36
2693 3546 5.043248 CACCAAGAAGGAAATGAACAACAC 58.957 41.667 0.00 0.00 41.22 3.32
2702 3555 4.261405 GGAAATGAACAACACGATCCACAA 60.261 41.667 0.00 0.00 31.98 3.33
2708 3561 1.195448 CAACACGATCCACAAGTCAGC 59.805 52.381 0.00 0.00 0.00 4.26
2709 3562 0.392706 ACACGATCCACAAGTCAGCA 59.607 50.000 0.00 0.00 0.00 4.41
2710 3563 1.202639 ACACGATCCACAAGTCAGCAA 60.203 47.619 0.00 0.00 0.00 3.91
2711 3564 1.872952 CACGATCCACAAGTCAGCAAA 59.127 47.619 0.00 0.00 0.00 3.68
2712 3565 2.290367 CACGATCCACAAGTCAGCAAAA 59.710 45.455 0.00 0.00 0.00 2.44
2713 3566 2.290641 ACGATCCACAAGTCAGCAAAAC 59.709 45.455 0.00 0.00 0.00 2.43
2714 3567 2.290367 CGATCCACAAGTCAGCAAAACA 59.710 45.455 0.00 0.00 0.00 2.83
2715 3568 3.607775 CGATCCACAAGTCAGCAAAACAG 60.608 47.826 0.00 0.00 0.00 3.16
2716 3569 2.722094 TCCACAAGTCAGCAAAACAGT 58.278 42.857 0.00 0.00 0.00 3.55
2717 3570 2.682856 TCCACAAGTCAGCAAAACAGTC 59.317 45.455 0.00 0.00 0.00 3.51
2718 3571 2.539547 CCACAAGTCAGCAAAACAGTCG 60.540 50.000 0.00 0.00 0.00 4.18
2719 3572 2.095853 CACAAGTCAGCAAAACAGTCGT 59.904 45.455 0.00 0.00 0.00 4.34
2720 3573 3.308595 CACAAGTCAGCAAAACAGTCGTA 59.691 43.478 0.00 0.00 0.00 3.43
2721 3574 3.308866 ACAAGTCAGCAAAACAGTCGTAC 59.691 43.478 0.00 0.00 0.00 3.67
2722 3575 3.173668 AGTCAGCAAAACAGTCGTACA 57.826 42.857 0.00 0.00 0.00 2.90
2723 3576 2.864343 AGTCAGCAAAACAGTCGTACAC 59.136 45.455 0.00 0.00 0.00 2.90
2748 3602 3.638160 ACTCCTCTGCATCATCTCTCTTC 59.362 47.826 0.00 0.00 0.00 2.87
2749 3603 3.637694 CTCCTCTGCATCATCTCTCTTCA 59.362 47.826 0.00 0.00 0.00 3.02
2755 3619 3.773667 TGCATCATCTCTCTTCACCTCTT 59.226 43.478 0.00 0.00 0.00 2.85
2758 3622 5.163468 GCATCATCTCTCTTCACCTCTTACA 60.163 44.000 0.00 0.00 0.00 2.41
2769 3633 8.463930 TCTTCACCTCTTACATTGACAAAAAT 57.536 30.769 0.00 0.00 0.00 1.82
2772 3636 9.567776 TTCACCTCTTACATTGACAAAAATCTA 57.432 29.630 0.00 0.00 0.00 1.98
2774 3638 9.831737 CACCTCTTACATTGACAAAAATCTAAG 57.168 33.333 0.00 0.00 0.00 2.18
2775 3639 9.014297 ACCTCTTACATTGACAAAAATCTAAGG 57.986 33.333 0.00 0.00 0.00 2.69
2806 3670 5.514834 CCTTCATCTACAAAAACAGAGGGGA 60.515 44.000 0.00 0.00 0.00 4.81
2807 3671 5.165961 TCATCTACAAAAACAGAGGGGAG 57.834 43.478 0.00 0.00 0.00 4.30
2830 3696 7.201626 GGAGAGATCAACATCAGAAACATTCAG 60.202 40.741 0.00 0.00 0.00 3.02
2837 3703 6.126863 ACATCAGAAACATTCAGGAACCTA 57.873 37.500 0.00 0.00 0.00 3.08
2847 3713 7.454260 ACATTCAGGAACCTAGTCAAATTTC 57.546 36.000 0.00 0.00 0.00 2.17
2854 3720 6.043938 AGGAACCTAGTCAAATTTCCACTGTA 59.956 38.462 8.89 0.00 38.60 2.74
2855 3721 6.713450 GGAACCTAGTCAAATTTCCACTGTAA 59.287 38.462 8.89 0.00 36.51 2.41
2856 3722 7.229907 GGAACCTAGTCAAATTTCCACTGTAAA 59.770 37.037 8.89 0.00 36.51 2.01
2857 3723 8.706322 AACCTAGTCAAATTTCCACTGTAAAT 57.294 30.769 8.89 0.00 0.00 1.40
2858 3724 8.336801 ACCTAGTCAAATTTCCACTGTAAATC 57.663 34.615 8.89 0.00 0.00 2.17
2859 3725 7.393515 ACCTAGTCAAATTTCCACTGTAAATCC 59.606 37.037 8.89 0.00 0.00 3.01
2860 3726 7.611855 CCTAGTCAAATTTCCACTGTAAATCCT 59.388 37.037 8.89 0.00 0.00 3.24
2861 3727 9.667107 CTAGTCAAATTTCCACTGTAAATCCTA 57.333 33.333 8.89 0.00 0.00 2.94
2862 3728 8.934023 AGTCAAATTTCCACTGTAAATCCTAA 57.066 30.769 0.00 0.00 0.00 2.69
2863 3729 9.362151 AGTCAAATTTCCACTGTAAATCCTAAA 57.638 29.630 0.00 0.00 0.00 1.85
2864 3730 9.974980 GTCAAATTTCCACTGTAAATCCTAAAA 57.025 29.630 0.00 0.00 0.00 1.52
2895 3761 9.185680 ACAATTAAAATCCCCATGTAACTAGTC 57.814 33.333 0.00 0.00 0.00 2.59
2896 3762 9.408648 CAATTAAAATCCCCATGTAACTAGTCT 57.591 33.333 0.00 0.00 0.00 3.24
2897 3763 9.990868 AATTAAAATCCCCATGTAACTAGTCTT 57.009 29.630 0.00 0.00 0.00 3.01
2903 3769 8.611051 ATCCCCATGTAACTAGTCTTATATCC 57.389 38.462 0.00 0.00 0.00 2.59
2904 3770 7.776745 TCCCCATGTAACTAGTCTTATATCCT 58.223 38.462 0.00 0.00 0.00 3.24
2905 3771 8.908095 TCCCCATGTAACTAGTCTTATATCCTA 58.092 37.037 0.00 0.00 0.00 2.94
2906 3772 9.191479 CCCCATGTAACTAGTCTTATATCCTAG 57.809 40.741 0.00 0.00 35.41 3.02
2907 3773 9.976776 CCCATGTAACTAGTCTTATATCCTAGA 57.023 37.037 0.00 0.00 33.85 2.43
2924 3790 9.927081 ATATCCTAGAAATTTCCTGTGTGAATT 57.073 29.630 14.61 0.00 0.00 2.17
2925 3791 7.687941 TCCTAGAAATTTCCTGTGTGAATTC 57.312 36.000 14.61 0.00 0.00 2.17
2926 3792 6.659242 TCCTAGAAATTTCCTGTGTGAATTCC 59.341 38.462 14.61 0.00 0.00 3.01
2927 3793 6.660949 CCTAGAAATTTCCTGTGTGAATTCCT 59.339 38.462 14.61 0.00 0.00 3.36
2928 3794 6.581171 AGAAATTTCCTGTGTGAATTCCTC 57.419 37.500 14.61 0.00 0.00 3.71
2929 3795 6.070656 AGAAATTTCCTGTGTGAATTCCTCA 58.929 36.000 14.61 0.00 0.00 3.86
2930 3796 6.723052 AGAAATTTCCTGTGTGAATTCCTCAT 59.277 34.615 14.61 0.00 36.14 2.90
2931 3797 7.890127 AGAAATTTCCTGTGTGAATTCCTCATA 59.110 33.333 14.61 0.53 36.14 2.15
2932 3798 8.421249 AAATTTCCTGTGTGAATTCCTCATAA 57.579 30.769 2.27 0.00 36.14 1.90
2933 3799 8.421249 AATTTCCTGTGTGAATTCCTCATAAA 57.579 30.769 2.27 6.21 36.14 1.40
2934 3800 8.599624 ATTTCCTGTGTGAATTCCTCATAAAT 57.400 30.769 2.27 7.78 36.14 1.40
2935 3801 8.421249 TTTCCTGTGTGAATTCCTCATAAATT 57.579 30.769 2.27 0.00 36.14 1.82
2936 3802 9.527157 TTTCCTGTGTGAATTCCTCATAAATTA 57.473 29.630 2.27 0.00 36.14 1.40
2937 3803 8.506168 TCCTGTGTGAATTCCTCATAAATTAC 57.494 34.615 2.27 0.00 36.14 1.89
2938 3804 8.106462 TCCTGTGTGAATTCCTCATAAATTACA 58.894 33.333 2.27 0.00 36.14 2.41
2939 3805 8.400947 CCTGTGTGAATTCCTCATAAATTACAG 58.599 37.037 2.27 0.00 36.14 2.74
2940 3806 8.862325 TGTGTGAATTCCTCATAAATTACAGT 57.138 30.769 2.27 0.00 36.14 3.55
2941 3807 8.729756 TGTGTGAATTCCTCATAAATTACAGTG 58.270 33.333 2.27 0.00 36.14 3.66
2942 3808 8.730680 GTGTGAATTCCTCATAAATTACAGTGT 58.269 33.333 0.00 0.00 36.14 3.55
2943 3809 9.952030 TGTGAATTCCTCATAAATTACAGTGTA 57.048 29.630 2.27 0.00 36.14 2.90
2962 3828 9.337396 ACAGTGTAAAAAGATGTAGACAAATGA 57.663 29.630 0.00 0.00 0.00 2.57
2979 3845 9.577110 AGACAAATGATGTAATTACATTGCAAG 57.423 29.630 27.48 19.99 46.20 4.01
2980 3846 9.357652 GACAAATGATGTAATTACATTGCAAGT 57.642 29.630 27.48 22.33 46.20 3.16
2999 3865 9.496873 TTGCAAGTACATAGTAAATTACACTGT 57.503 29.630 5.89 10.08 32.65 3.55
3019 3885 9.959721 ACACTGTAAATCATAGGAAAATACAGT 57.040 29.630 19.12 19.12 43.66 3.55
3033 3899 9.793259 AGGAAAATACAGTAGACAAAATCTGAA 57.207 29.630 0.00 0.00 38.49 3.02
3049 3915 9.872757 CAAAATCTGAAATCAAAAACATTCAGG 57.127 29.630 12.78 0.00 45.51 3.86
3050 3916 9.835389 AAAATCTGAAATCAAAAACATTCAGGA 57.165 25.926 12.78 2.99 45.51 3.86
3051 3917 9.835389 AAATCTGAAATCAAAAACATTCAGGAA 57.165 25.926 12.78 0.00 45.51 3.36
3052 3918 8.822652 ATCTGAAATCAAAAACATTCAGGAAC 57.177 30.769 12.78 0.00 45.51 3.62
3053 3919 7.209475 TCTGAAATCAAAAACATTCAGGAACC 58.791 34.615 12.78 0.00 45.51 3.62
3054 3920 7.069826 TCTGAAATCAAAAACATTCAGGAACCT 59.930 33.333 12.78 0.00 45.51 3.50
3055 3921 8.243961 TGAAATCAAAAACATTCAGGAACCTA 57.756 30.769 0.00 0.00 0.00 3.08
3056 3922 8.700051 TGAAATCAAAAACATTCAGGAACCTAA 58.300 29.630 0.00 0.00 0.00 2.69
3057 3923 9.710900 GAAATCAAAAACATTCAGGAACCTAAT 57.289 29.630 0.00 0.00 0.00 1.73
3058 3924 9.710900 AAATCAAAAACATTCAGGAACCTAATC 57.289 29.630 0.00 0.00 0.00 1.75
3059 3925 7.831691 TCAAAAACATTCAGGAACCTAATCA 57.168 32.000 0.00 0.00 0.00 2.57
3060 3926 8.243961 TCAAAAACATTCAGGAACCTAATCAA 57.756 30.769 0.00 0.00 0.00 2.57
3061 3927 8.700051 TCAAAAACATTCAGGAACCTAATCAAA 58.300 29.630 0.00 0.00 0.00 2.69
3062 3928 9.323985 CAAAAACATTCAGGAACCTAATCAAAA 57.676 29.630 0.00 0.00 0.00 2.44
3065 3931 9.710900 AAACATTCAGGAACCTAATCAAAATTC 57.289 29.630 0.00 0.00 0.00 2.17
3066 3932 7.840931 ACATTCAGGAACCTAATCAAAATTCC 58.159 34.615 0.00 0.00 39.35 3.01
3067 3933 7.454380 ACATTCAGGAACCTAATCAAAATTCCA 59.546 33.333 4.28 0.00 41.15 3.53
3068 3934 7.466746 TTCAGGAACCTAATCAAAATTCCAG 57.533 36.000 4.28 0.00 41.15 3.86
3069 3935 6.552008 TCAGGAACCTAATCAAAATTCCAGT 58.448 36.000 4.28 0.00 41.15 4.00
3070 3936 6.434028 TCAGGAACCTAATCAAAATTCCAGTG 59.566 38.462 4.28 0.00 41.15 3.66
3071 3937 6.209391 CAGGAACCTAATCAAAATTCCAGTGT 59.791 38.462 4.28 0.00 41.15 3.55
3072 3938 7.393234 CAGGAACCTAATCAAAATTCCAGTGTA 59.607 37.037 4.28 0.00 41.15 2.90
3073 3939 7.947890 AGGAACCTAATCAAAATTCCAGTGTAA 59.052 33.333 4.28 0.00 41.15 2.41
3074 3940 8.581578 GGAACCTAATCAAAATTCCAGTGTAAA 58.418 33.333 0.00 0.00 38.96 2.01
3075 3941 9.974980 GAACCTAATCAAAATTCCAGTGTAAAA 57.025 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.816863 CGCCCTATAGCCACCGATGT 61.817 60.000 0.00 0.00 0.00 3.06
1 2 1.079819 CGCCCTATAGCCACCGATG 60.080 63.158 0.00 0.00 0.00 3.84
2 3 1.119574 AACGCCCTATAGCCACCGAT 61.120 55.000 0.00 0.00 0.00 4.18
3 4 1.759299 AACGCCCTATAGCCACCGA 60.759 57.895 0.00 0.00 0.00 4.69
33 34 2.744202 GGTGAGAAATCTTCATGCGTGT 59.256 45.455 5.68 0.00 0.00 4.49
36 37 3.005554 ACAGGTGAGAAATCTTCATGCG 58.994 45.455 0.00 0.00 0.00 4.73
37 38 4.005650 TGACAGGTGAGAAATCTTCATGC 58.994 43.478 0.00 0.00 0.00 4.06
38 39 5.006455 CGATGACAGGTGAGAAATCTTCATG 59.994 44.000 0.00 0.00 0.00 3.07
40 41 4.220602 TCGATGACAGGTGAGAAATCTTCA 59.779 41.667 0.00 0.00 0.00 3.02
52 53 3.393800 CTTGACTTTGTCGATGACAGGT 58.606 45.455 0.00 4.00 43.69 4.00
53 54 2.158449 GCTTGACTTTGTCGATGACAGG 59.842 50.000 0.00 1.05 43.69 4.00
76 77 1.377333 GGCCACACTTACCAGAGCC 60.377 63.158 0.00 0.00 0.00 4.70
97 98 2.343758 CTACCGCAGTGTGCCACT 59.656 61.111 0.00 2.38 46.51 4.00
98 99 2.027625 GACTACCGCAGTGTGCCAC 61.028 63.158 0.00 0.00 41.12 5.01
99 100 2.342279 GACTACCGCAGTGTGCCA 59.658 61.111 0.00 0.00 41.12 4.92
101 102 1.615107 GAACGACTACCGCAGTGTGC 61.615 60.000 0.00 0.00 43.32 4.57
102 103 0.318360 TGAACGACTACCGCAGTGTG 60.318 55.000 0.00 0.00 43.32 3.82
103 104 0.039437 CTGAACGACTACCGCAGTGT 60.039 55.000 0.00 0.00 43.32 3.55
105 106 0.039437 CACTGAACGACTACCGCAGT 60.039 55.000 0.00 0.00 40.52 4.40
106 107 0.240145 TCACTGAACGACTACCGCAG 59.760 55.000 0.00 0.00 43.32 5.18
107 108 0.885879 ATCACTGAACGACTACCGCA 59.114 50.000 0.00 0.00 43.32 5.69
109 110 4.103357 CCTAAATCACTGAACGACTACCG 58.897 47.826 0.00 0.00 45.44 4.02
110 111 5.320549 TCCTAAATCACTGAACGACTACC 57.679 43.478 0.00 0.00 0.00 3.18
111 112 5.575995 GGTTCCTAAATCACTGAACGACTAC 59.424 44.000 0.00 0.00 38.34 2.73
113 114 4.283722 AGGTTCCTAAATCACTGAACGACT 59.716 41.667 0.00 0.00 38.34 4.18
199 217 5.163509 ACTCATACAATCGCACATACACTCT 60.164 40.000 0.00 0.00 0.00 3.24
200 218 5.043903 ACTCATACAATCGCACATACACTC 58.956 41.667 0.00 0.00 0.00 3.51
202 220 4.025730 CCACTCATACAATCGCACATACAC 60.026 45.833 0.00 0.00 0.00 2.90
271 289 0.250989 TCGAAACGAATTGCCCCCTT 60.251 50.000 0.00 0.00 31.06 3.95
274 292 1.064060 CTCATCGAAACGAATTGCCCC 59.936 52.381 0.00 0.00 39.99 5.80
424 915 7.704472 GGAGTATAGATCACTCAAACTCTGTTG 59.296 40.741 12.32 0.00 43.50 3.33
429 920 8.177119 AGATGGAGTATAGATCACTCAAACTC 57.823 38.462 12.32 7.67 43.50 3.01
518 1009 4.820897 CCATATCGTGCACTATATGGTGT 58.179 43.478 38.31 15.51 45.35 4.16
534 1025 4.202264 ACACCGAAACAGAGATCCCATATC 60.202 45.833 0.00 0.00 0.00 1.63
548 1039 7.322699 CCGCATTATTATAAATGACACCGAAAC 59.677 37.037 1.99 0.00 38.84 2.78
615 1107 5.379187 CATCACATCCCTCACCATAAATCA 58.621 41.667 0.00 0.00 0.00 2.57
693 1191 4.398247 GAATTGATGAGACGTGCACTTTC 58.602 43.478 16.19 11.10 0.00 2.62
769 1268 3.761752 ACACACAAAAAGCTTACCACAGT 59.238 39.130 0.00 0.00 0.00 3.55
782 1281 2.359214 ACACACACACACACACACAAAA 59.641 40.909 0.00 0.00 0.00 2.44
786 1285 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
788 1287 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
790 1289 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
792 1291 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
795 1294 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
796 1295 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
797 1296 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
798 1297 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
799 1298 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
800 1299 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
801 1300 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
802 1301 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
803 1302 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
804 1303 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
805 1304 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
806 1305 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
807 1306 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
808 1307 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
809 1308 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
810 1309 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
811 1310 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
812 1311 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
813 1312 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
814 1313 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
815 1314 2.342179 CTACACACACACACACACACA 58.658 47.619 0.00 0.00 0.00 3.72
816 1315 1.663643 CCTACACACACACACACACAC 59.336 52.381 0.00 0.00 0.00 3.82
817 1316 1.406205 CCCTACACACACACACACACA 60.406 52.381 0.00 0.00 0.00 3.72
818 1317 1.134640 TCCCTACACACACACACACAC 60.135 52.381 0.00 0.00 0.00 3.82
819 1318 1.134640 GTCCCTACACACACACACACA 60.135 52.381 0.00 0.00 0.00 3.72
820 1319 1.134640 TGTCCCTACACACACACACAC 60.135 52.381 0.00 0.00 0.00 3.82
821 1320 1.138069 CTGTCCCTACACACACACACA 59.862 52.381 0.00 0.00 0.00 3.72
822 1321 1.411246 TCTGTCCCTACACACACACAC 59.589 52.381 0.00 0.00 0.00 3.82
823 1322 1.783071 TCTGTCCCTACACACACACA 58.217 50.000 0.00 0.00 0.00 3.72
824 1323 2.364324 TCTTCTGTCCCTACACACACAC 59.636 50.000 0.00 0.00 0.00 3.82
825 1324 2.673258 TCTTCTGTCCCTACACACACA 58.327 47.619 0.00 0.00 0.00 3.72
826 1325 3.673594 CGATCTTCTGTCCCTACACACAC 60.674 52.174 0.00 0.00 0.00 3.82
827 1326 2.492088 CGATCTTCTGTCCCTACACACA 59.508 50.000 0.00 0.00 0.00 3.72
828 1327 2.735762 GCGATCTTCTGTCCCTACACAC 60.736 54.545 0.00 0.00 0.00 3.82
829 1328 1.476891 GCGATCTTCTGTCCCTACACA 59.523 52.381 0.00 0.00 0.00 3.72
830 1329 1.202428 GGCGATCTTCTGTCCCTACAC 60.202 57.143 0.00 0.00 0.00 2.90
831 1330 1.112113 GGCGATCTTCTGTCCCTACA 58.888 55.000 0.00 0.00 0.00 2.74
905 1404 6.697019 GCCACGACTTTAAATATGAATGCAAT 59.303 34.615 0.00 0.00 0.00 3.56
907 1406 5.124617 TGCCACGACTTTAAATATGAATGCA 59.875 36.000 0.00 0.00 0.00 3.96
924 1423 1.005748 CTCTCTTGCACTGCCACGA 60.006 57.895 0.00 0.00 0.00 4.35
963 1470 0.895100 GTTGGCAGGTGCAAGATCCA 60.895 55.000 4.01 0.00 44.36 3.41
971 1478 1.852067 CGTACCTTGTTGGCAGGTGC 61.852 60.000 6.42 4.27 40.22 5.01
972 1479 1.234615 CCGTACCTTGTTGGCAGGTG 61.235 60.000 6.42 0.00 40.22 4.00
973 1480 1.072505 CCGTACCTTGTTGGCAGGT 59.927 57.895 1.52 1.52 40.22 4.00
974 1481 1.674322 CCCGTACCTTGTTGGCAGG 60.674 63.158 0.00 0.00 40.22 4.85
976 1483 1.706995 TTCCCCGTACCTTGTTGGCA 61.707 55.000 0.00 0.00 40.22 4.92
977 1484 0.958876 CTTCCCCGTACCTTGTTGGC 60.959 60.000 0.00 0.00 40.22 4.52
978 1485 0.688487 TCTTCCCCGTACCTTGTTGG 59.312 55.000 0.00 0.00 42.93 3.77
980 1487 2.262637 TGATCTTCCCCGTACCTTGTT 58.737 47.619 0.00 0.00 0.00 2.83
981 1488 1.946984 TGATCTTCCCCGTACCTTGT 58.053 50.000 0.00 0.00 0.00 3.16
991 1498 1.595382 CGGACGCCATGATCTTCCC 60.595 63.158 0.00 0.00 0.00 3.97
1194 1701 2.490217 CTGCCGTGGTCGTAGAGG 59.510 66.667 0.00 0.00 36.95 3.69
1330 1837 3.829948 CAAATAACTGAGCTGCACAAGG 58.170 45.455 1.02 0.00 0.00 3.61
1849 2375 9.244799 CGTGAATGAATGTACTGTATAAAGCTA 57.755 33.333 0.00 0.00 0.00 3.32
1850 2376 7.254455 GCGTGAATGAATGTACTGTATAAAGCT 60.254 37.037 0.00 0.00 0.00 3.74
1851 2377 6.846283 GCGTGAATGAATGTACTGTATAAAGC 59.154 38.462 0.00 0.00 0.00 3.51
1853 2379 6.019398 CCGCGTGAATGAATGTACTGTATAAA 60.019 38.462 4.92 0.00 0.00 1.40
1854 2380 5.460748 CCGCGTGAATGAATGTACTGTATAA 59.539 40.000 4.92 0.00 0.00 0.98
1855 2381 4.979815 CCGCGTGAATGAATGTACTGTATA 59.020 41.667 4.92 0.00 0.00 1.47
1856 2382 3.802139 CCGCGTGAATGAATGTACTGTAT 59.198 43.478 4.92 0.00 0.00 2.29
1857 2383 3.183754 CCGCGTGAATGAATGTACTGTA 58.816 45.455 4.92 0.00 0.00 2.74
1859 2385 1.327460 CCCGCGTGAATGAATGTACTG 59.673 52.381 4.92 0.00 0.00 2.74
1861 2387 1.647346 TCCCGCGTGAATGAATGTAC 58.353 50.000 4.92 0.00 0.00 2.90
1864 2390 1.192312 CGTATCCCGCGTGAATGAATG 59.808 52.381 4.92 0.00 0.00 2.67
1865 2391 1.202486 ACGTATCCCGCGTGAATGAAT 60.202 47.619 4.92 0.00 41.33 2.57
1866 2392 0.173935 ACGTATCCCGCGTGAATGAA 59.826 50.000 4.92 0.00 41.33 2.57
1870 2396 1.599071 CTAGTACGTATCCCGCGTGAA 59.401 52.381 4.92 0.00 42.87 3.18
1871 2397 1.220529 CTAGTACGTATCCCGCGTGA 58.779 55.000 4.92 0.00 42.87 4.35
1873 2399 1.510480 GCCTAGTACGTATCCCGCGT 61.510 60.000 4.92 0.00 45.11 6.01
1874 2400 1.208614 GCCTAGTACGTATCCCGCG 59.791 63.158 0.00 0.00 41.42 6.46
1876 2402 0.886490 ACGGCCTAGTACGTATCCCG 60.886 60.000 15.71 15.71 42.15 5.14
1877 2403 0.877743 GACGGCCTAGTACGTATCCC 59.122 60.000 0.00 0.00 44.24 3.85
1880 2406 1.141657 TCAGGACGGCCTAGTACGTAT 59.858 52.381 11.18 0.00 44.80 3.06
1881 2407 0.541392 TCAGGACGGCCTAGTACGTA 59.459 55.000 11.18 0.00 44.80 3.57
1882 2408 0.106819 ATCAGGACGGCCTAGTACGT 60.107 55.000 11.18 8.46 44.80 3.57
1885 2415 5.446260 TGATATATCAGGACGGCCTAGTA 57.554 43.478 11.18 6.36 44.80 1.82
1890 2420 7.275920 AGATAAATTGATATATCAGGACGGCC 58.724 38.462 14.86 0.00 38.19 6.13
1911 2445 7.148120 GCCTCTGTAGTAGTGTACACAAAGATA 60.148 40.741 27.06 8.21 0.00 1.98
1912 2732 6.350277 GCCTCTGTAGTAGTGTACACAAAGAT 60.350 42.308 27.06 9.23 0.00 2.40
1924 2744 1.409427 GATTGGCGCCTCTGTAGTAGT 59.591 52.381 29.70 0.00 0.00 2.73
1925 2745 1.269831 GGATTGGCGCCTCTGTAGTAG 60.270 57.143 29.70 0.00 0.00 2.57
1926 2746 0.750850 GGATTGGCGCCTCTGTAGTA 59.249 55.000 29.70 0.07 0.00 1.82
1927 2747 1.522569 GGATTGGCGCCTCTGTAGT 59.477 57.895 29.70 2.54 0.00 2.73
2094 2917 1.602851 CAGCAGGCATATCTTCACAGC 59.397 52.381 0.00 0.00 0.00 4.40
2097 2920 4.005487 AGATCAGCAGGCATATCTTCAC 57.995 45.455 0.00 0.00 0.00 3.18
2108 2931 5.273674 TCAAAGACAGATAGATCAGCAGG 57.726 43.478 0.00 0.00 0.00 4.85
2141 2964 4.142227 ACACAGTCCGTTCATATACTGACC 60.142 45.833 8.21 0.00 41.47 4.02
2144 2967 4.562789 CACACACAGTCCGTTCATATACTG 59.437 45.833 0.00 0.00 43.90 2.74
2145 2968 4.219944 ACACACACAGTCCGTTCATATACT 59.780 41.667 0.00 0.00 0.00 2.12
2146 2969 4.491676 ACACACACAGTCCGTTCATATAC 58.508 43.478 0.00 0.00 0.00 1.47
2147 2970 4.794278 ACACACACAGTCCGTTCATATA 57.206 40.909 0.00 0.00 0.00 0.86
2173 2996 3.637432 GACTCATCGGACATCATCAGTC 58.363 50.000 0.00 0.00 35.29 3.51
2199 3022 6.970484 ACAAAAGTAACCAGAAGCATACAAG 58.030 36.000 0.00 0.00 0.00 3.16
2241 3068 7.161404 TCCCGAGTAATTTATTCATCCATGAG 58.839 38.462 0.00 0.00 38.19 2.90
2282 3109 7.411486 TGTTTTCAAATAGACAGTCCCAAAA 57.589 32.000 0.00 0.00 0.00 2.44
2314 3141 5.380900 TGTAATGTGTTGATTGGTCAGGAA 58.619 37.500 0.00 0.00 35.39 3.36
2328 3155 5.880332 CCCTGCTAATACAGTTGTAATGTGT 59.120 40.000 0.00 0.00 35.83 3.72
2329 3156 6.112734 TCCCTGCTAATACAGTTGTAATGTG 58.887 40.000 0.00 0.00 35.83 3.21
2338 3165 5.700402 AGTGATTTCCCTGCTAATACAGT 57.300 39.130 0.00 0.00 35.83 3.55
2344 3171 6.620877 TCTTTCTAGTGATTTCCCTGCTAA 57.379 37.500 0.00 0.00 0.00 3.09
2375 3202 1.017701 CCTGACCCGTTTAGGCGTTC 61.018 60.000 0.00 0.00 39.21 3.95
2379 3206 2.079158 GTTTACCTGACCCGTTTAGGC 58.921 52.381 0.00 0.00 39.21 3.93
2398 3225 2.926242 ACGAACCGGGTGGGATGT 60.926 61.111 6.42 0.00 40.75 3.06
2403 3230 4.388499 CCAGGACGAACCGGGTGG 62.388 72.222 6.32 1.81 46.54 4.61
2413 3240 1.170290 GGGGTTTGTTGTCCAGGACG 61.170 60.000 15.24 0.00 34.95 4.79
2435 3262 2.241281 TTCGTGGTCCCTAATCAGGA 57.759 50.000 0.00 0.00 45.91 3.86
2438 3265 3.181453 TGTGTTTTCGTGGTCCCTAATCA 60.181 43.478 0.00 0.00 0.00 2.57
2439 3266 3.404899 TGTGTTTTCGTGGTCCCTAATC 58.595 45.455 0.00 0.00 0.00 1.75
2440 3267 3.495434 TGTGTTTTCGTGGTCCCTAAT 57.505 42.857 0.00 0.00 0.00 1.73
2442 3269 2.773487 CATGTGTTTTCGTGGTCCCTA 58.227 47.619 0.00 0.00 0.00 3.53
2452 3279 3.197265 AGCTTTGTTGGCATGTGTTTTC 58.803 40.909 0.00 0.00 0.00 2.29
2454 3281 2.937799 CAAGCTTTGTTGGCATGTGTTT 59.062 40.909 0.00 0.00 0.00 2.83
2456 3283 1.807377 GCAAGCTTTGTTGGCATGTGT 60.807 47.619 0.00 0.00 32.04 3.72
2458 3285 0.464870 TGCAAGCTTTGTTGGCATGT 59.535 45.000 4.42 0.00 32.04 3.21
2459 3286 1.262151 GTTGCAAGCTTTGTTGGCATG 59.738 47.619 8.99 0.00 0.00 4.06
2460 3287 1.585297 GTTGCAAGCTTTGTTGGCAT 58.415 45.000 8.99 0.00 0.00 4.40
2461 3288 0.805322 CGTTGCAAGCTTTGTTGGCA 60.805 50.000 0.00 4.42 0.00 4.92
2462 3289 1.926490 CGTTGCAAGCTTTGTTGGC 59.074 52.632 0.00 0.00 0.00 4.52
2463 3290 0.805322 TGCGTTGCAAGCTTTGTTGG 60.805 50.000 17.72 0.00 34.76 3.77
2464 3291 0.298411 GTGCGTTGCAAGCTTTGTTG 59.702 50.000 17.72 0.00 41.47 3.33
2465 3292 1.139226 CGTGCGTTGCAAGCTTTGTT 61.139 50.000 17.72 0.00 41.47 2.83
2466 3293 1.586042 CGTGCGTTGCAAGCTTTGT 60.586 52.632 17.72 0.00 41.47 2.83
2467 3294 3.214412 CGTGCGTTGCAAGCTTTG 58.786 55.556 17.72 0.00 41.47 2.77
2479 3306 3.029735 GTTTGGCCTTTGCGTGCG 61.030 61.111 3.32 0.00 38.85 5.34
2480 3307 2.661537 GGTTTGGCCTTTGCGTGC 60.662 61.111 3.32 0.00 38.85 5.34
2488 3315 3.590574 GTGGAGGGGGTTTGGCCT 61.591 66.667 3.32 0.00 37.43 5.19
2489 3316 2.956077 TTTGTGGAGGGGGTTTGGCC 62.956 60.000 0.00 0.00 0.00 5.36
2491 3318 0.756294 GTTTTGTGGAGGGGGTTTGG 59.244 55.000 0.00 0.00 0.00 3.28
2493 3320 1.491668 GTGTTTTGTGGAGGGGGTTT 58.508 50.000 0.00 0.00 0.00 3.27
2521 3359 3.370104 AGATCTGTCTAGTGGTTGAGGG 58.630 50.000 0.00 0.00 31.36 4.30
2528 3366 4.950475 TGTTAGGTGAGATCTGTCTAGTGG 59.050 45.833 0.00 0.00 33.97 4.00
2551 3389 2.769095 GTCTCCAGATTTGTCTAGCCCT 59.231 50.000 0.00 0.00 0.00 5.19
2554 3392 2.197577 GCGTCTCCAGATTTGTCTAGC 58.802 52.381 0.00 0.00 0.00 3.42
2555 3393 2.482142 GGGCGTCTCCAGATTTGTCTAG 60.482 54.545 0.00 0.00 36.21 2.43
2556 3394 1.480954 GGGCGTCTCCAGATTTGTCTA 59.519 52.381 0.00 0.00 36.21 2.59
2557 3395 0.250513 GGGCGTCTCCAGATTTGTCT 59.749 55.000 0.00 0.00 36.21 3.41
2558 3396 0.036388 TGGGCGTCTCCAGATTTGTC 60.036 55.000 0.00 0.00 36.21 3.18
2559 3397 0.620556 ATGGGCGTCTCCAGATTTGT 59.379 50.000 0.00 0.00 40.56 2.83
2560 3398 1.019673 CATGGGCGTCTCCAGATTTG 58.980 55.000 0.00 0.00 40.56 2.32
2561 3399 0.911769 TCATGGGCGTCTCCAGATTT 59.088 50.000 0.00 0.00 40.56 2.17
2562 3400 0.911769 TTCATGGGCGTCTCCAGATT 59.088 50.000 0.00 0.00 40.56 2.40
2569 3407 0.404040 TCCCTTTTTCATGGGCGTCT 59.596 50.000 0.00 0.00 43.04 4.18
2580 3418 2.035783 GGCCGCCTCTCCCTTTTT 59.964 61.111 0.71 0.00 0.00 1.94
2581 3419 2.616458 ATGGCCGCCTCTCCCTTTT 61.616 57.895 11.61 0.00 0.00 2.27
2583 3421 3.801997 CATGGCCGCCTCTCCCTT 61.802 66.667 11.61 0.00 0.00 3.95
2595 3433 3.839353 CTCCCCGATCTGCCATGGC 62.839 68.421 30.54 30.54 42.35 4.40
2601 3439 2.123251 TCCTCCTCCCCGATCTGC 60.123 66.667 0.00 0.00 0.00 4.26
2626 3479 5.660864 TCTCCCAATTTTGTGTTTCCTCTTT 59.339 36.000 0.00 0.00 0.00 2.52
2659 3512 4.361783 TCCTTCTTGGTGATCATCAGGTA 58.638 43.478 16.82 7.53 37.07 3.08
2665 3518 6.012113 TGTTCATTTCCTTCTTGGTGATCAT 58.988 36.000 0.00 0.00 37.07 2.45
2674 3527 5.048713 GGATCGTGTTGTTCATTTCCTTCTT 60.049 40.000 0.00 0.00 0.00 2.52
2675 3528 4.455877 GGATCGTGTTGTTCATTTCCTTCT 59.544 41.667 0.00 0.00 0.00 2.85
2676 3529 4.215399 TGGATCGTGTTGTTCATTTCCTTC 59.785 41.667 0.00 0.00 0.00 3.46
2682 3535 3.882888 ACTTGTGGATCGTGTTGTTCATT 59.117 39.130 0.00 0.00 0.00 2.57
2693 3546 2.290367 TGTTTTGCTGACTTGTGGATCG 59.710 45.455 0.00 0.00 0.00 3.69
2702 3555 2.864343 GTGTACGACTGTTTTGCTGACT 59.136 45.455 0.00 0.00 0.00 3.41
2708 3561 3.001939 GGAGTTGGTGTACGACTGTTTTG 59.998 47.826 0.00 0.00 44.02 2.44
2709 3562 3.118519 AGGAGTTGGTGTACGACTGTTTT 60.119 43.478 0.00 0.00 44.02 2.43
2710 3563 2.433239 AGGAGTTGGTGTACGACTGTTT 59.567 45.455 0.00 0.00 44.02 2.83
2711 3564 2.035576 GAGGAGTTGGTGTACGACTGTT 59.964 50.000 0.00 0.00 44.02 3.16
2712 3565 1.612463 GAGGAGTTGGTGTACGACTGT 59.388 52.381 0.00 0.00 44.02 3.55
2713 3566 1.887198 AGAGGAGTTGGTGTACGACTG 59.113 52.381 0.00 0.00 44.02 3.51
2714 3567 1.887198 CAGAGGAGTTGGTGTACGACT 59.113 52.381 0.00 0.00 46.71 4.18
2715 3568 1.669211 GCAGAGGAGTTGGTGTACGAC 60.669 57.143 0.00 0.00 0.00 4.34
2716 3569 0.601558 GCAGAGGAGTTGGTGTACGA 59.398 55.000 0.00 0.00 0.00 3.43
2717 3570 0.317160 TGCAGAGGAGTTGGTGTACG 59.683 55.000 0.00 0.00 0.00 3.67
2718 3571 2.028112 TGATGCAGAGGAGTTGGTGTAC 60.028 50.000 0.00 0.00 0.00 2.90
2719 3572 2.256306 TGATGCAGAGGAGTTGGTGTA 58.744 47.619 0.00 0.00 0.00 2.90
2720 3573 1.059098 TGATGCAGAGGAGTTGGTGT 58.941 50.000 0.00 0.00 0.00 4.16
2721 3574 2.093075 AGATGATGCAGAGGAGTTGGTG 60.093 50.000 0.00 0.00 0.00 4.17
2722 3575 2.170187 GAGATGATGCAGAGGAGTTGGT 59.830 50.000 0.00 0.00 0.00 3.67
2723 3576 2.435069 AGAGATGATGCAGAGGAGTTGG 59.565 50.000 0.00 0.00 0.00 3.77
2748 3602 9.831737 CTTAGATTTTTGTCAATGTAAGAGGTG 57.168 33.333 4.96 0.00 40.22 4.00
2749 3603 9.014297 CCTTAGATTTTTGTCAATGTAAGAGGT 57.986 33.333 10.41 0.00 40.22 3.85
2758 3622 9.104713 AGGAAATTCCCTTAGATTTTTGTCAAT 57.895 29.630 8.66 0.00 37.19 2.57
2769 3633 7.749377 TGTAGATGAAGGAAATTCCCTTAGA 57.251 36.000 8.66 0.00 45.97 2.10
2774 3638 7.666623 TGTTTTTGTAGATGAAGGAAATTCCC 58.333 34.615 8.66 0.00 37.19 3.97
2775 3639 8.576442 TCTGTTTTTGTAGATGAAGGAAATTCC 58.424 33.333 3.29 3.29 37.08 3.01
2806 3670 6.598457 CCTGAATGTTTCTGATGTTGATCTCT 59.402 38.462 0.00 0.00 0.00 3.10
2807 3671 6.596888 TCCTGAATGTTTCTGATGTTGATCTC 59.403 38.462 0.00 0.00 0.00 2.75
2830 3696 5.070685 ACAGTGGAAATTTGACTAGGTTCC 58.929 41.667 0.00 0.00 38.59 3.62
2837 3703 8.934023 TTAGGATTTACAGTGGAAATTTGACT 57.066 30.769 14.60 12.33 0.00 3.41
2869 3735 9.185680 GACTAGTTACATGGGGATTTTAATTGT 57.814 33.333 0.00 0.00 0.00 2.71
2870 3736 9.408648 AGACTAGTTACATGGGGATTTTAATTG 57.591 33.333 0.00 0.00 0.00 2.32
2871 3737 9.990868 AAGACTAGTTACATGGGGATTTTAATT 57.009 29.630 0.00 0.00 0.00 1.40
2877 3743 9.047947 GGATATAAGACTAGTTACATGGGGATT 57.952 37.037 0.00 0.00 0.00 3.01
2878 3744 8.410623 AGGATATAAGACTAGTTACATGGGGAT 58.589 37.037 0.00 0.00 0.00 3.85
2879 3745 7.776745 AGGATATAAGACTAGTTACATGGGGA 58.223 38.462 0.00 0.00 0.00 4.81
2880 3746 9.191479 CTAGGATATAAGACTAGTTACATGGGG 57.809 40.741 0.00 0.00 31.75 4.96
2881 3747 9.976776 TCTAGGATATAAGACTAGTTACATGGG 57.023 37.037 0.00 0.00 36.47 4.00
2898 3764 9.927081 AATTCACACAGGAAATTTCTAGGATAT 57.073 29.630 17.42 1.00 0.00 1.63
2899 3765 9.396022 GAATTCACACAGGAAATTTCTAGGATA 57.604 33.333 17.42 0.00 0.00 2.59
2900 3766 7.340487 GGAATTCACACAGGAAATTTCTAGGAT 59.660 37.037 17.42 0.00 0.00 3.24
2901 3767 6.659242 GGAATTCACACAGGAAATTTCTAGGA 59.341 38.462 17.42 5.12 0.00 2.94
2902 3768 6.660949 AGGAATTCACACAGGAAATTTCTAGG 59.339 38.462 17.42 9.77 0.00 3.02
2903 3769 7.391554 TGAGGAATTCACACAGGAAATTTCTAG 59.608 37.037 17.42 12.33 0.00 2.43
2904 3770 7.230747 TGAGGAATTCACACAGGAAATTTCTA 58.769 34.615 17.42 0.00 0.00 2.10
2905 3771 6.070656 TGAGGAATTCACACAGGAAATTTCT 58.929 36.000 17.42 1.61 0.00 2.52
2906 3772 6.331369 TGAGGAATTCACACAGGAAATTTC 57.669 37.500 9.83 9.83 0.00 2.17
2907 3773 6.923199 ATGAGGAATTCACACAGGAAATTT 57.077 33.333 7.93 0.00 38.99 1.82
2908 3774 8.421249 TTTATGAGGAATTCACACAGGAAATT 57.579 30.769 7.93 0.00 38.99 1.82
2909 3775 8.599624 ATTTATGAGGAATTCACACAGGAAAT 57.400 30.769 7.93 10.20 38.99 2.17
2910 3776 8.421249 AATTTATGAGGAATTCACACAGGAAA 57.579 30.769 7.93 8.69 38.99 3.13
2911 3777 8.956426 GTAATTTATGAGGAATTCACACAGGAA 58.044 33.333 7.93 4.12 38.99 3.36
2912 3778 8.106462 TGTAATTTATGAGGAATTCACACAGGA 58.894 33.333 7.93 0.00 38.99 3.86
2913 3779 8.279970 TGTAATTTATGAGGAATTCACACAGG 57.720 34.615 7.93 0.00 38.99 4.00
2914 3780 8.950210 ACTGTAATTTATGAGGAATTCACACAG 58.050 33.333 7.93 10.12 38.99 3.66
2915 3781 8.729756 CACTGTAATTTATGAGGAATTCACACA 58.270 33.333 7.93 4.50 38.99 3.72
2916 3782 8.730680 ACACTGTAATTTATGAGGAATTCACAC 58.269 33.333 7.93 0.00 38.99 3.82
2917 3783 8.862325 ACACTGTAATTTATGAGGAATTCACA 57.138 30.769 7.93 7.36 38.99 3.58
2936 3802 9.337396 TCATTTGTCTACATCTTTTTACACTGT 57.663 29.630 0.00 0.00 0.00 3.55
2953 3819 9.577110 CTTGCAATGTAATTACATCATTTGTCT 57.423 29.630 27.07 9.84 45.55 3.41
2954 3820 9.357652 ACTTGCAATGTAATTACATCATTTGTC 57.642 29.630 27.07 18.19 45.55 3.18
2973 3839 9.496873 ACAGTGTAATTTACTATGTACTTGCAA 57.503 29.630 12.55 0.00 0.00 4.08
2993 3859 9.959721 ACTGTATTTTCCTATGATTTACAGTGT 57.040 29.630 10.94 0.00 43.80 3.55
3007 3873 9.793259 TTCAGATTTTGTCTACTGTATTTTCCT 57.207 29.630 0.00 0.00 34.69 3.36
3023 3889 9.872757 CCTGAATGTTTTTGATTTCAGATTTTG 57.127 29.630 11.90 0.00 44.97 2.44
3024 3890 9.835389 TCCTGAATGTTTTTGATTTCAGATTTT 57.165 25.926 11.90 0.00 44.97 1.82
3025 3891 9.835389 TTCCTGAATGTTTTTGATTTCAGATTT 57.165 25.926 11.90 0.00 44.97 2.17
3026 3892 9.264719 GTTCCTGAATGTTTTTGATTTCAGATT 57.735 29.630 11.90 0.00 44.97 2.40
3027 3893 7.874528 GGTTCCTGAATGTTTTTGATTTCAGAT 59.125 33.333 11.90 0.00 44.97 2.90
3028 3894 7.069826 AGGTTCCTGAATGTTTTTGATTTCAGA 59.930 33.333 11.90 0.00 44.97 3.27
3029 3895 7.212274 AGGTTCCTGAATGTTTTTGATTTCAG 58.788 34.615 4.87 4.87 42.91 3.02
3030 3896 7.123355 AGGTTCCTGAATGTTTTTGATTTCA 57.877 32.000 0.00 0.00 0.00 2.69
3031 3897 9.710900 ATTAGGTTCCTGAATGTTTTTGATTTC 57.289 29.630 1.12 0.00 0.00 2.17
3032 3898 9.710900 GATTAGGTTCCTGAATGTTTTTGATTT 57.289 29.630 1.12 0.00 0.00 2.17
3033 3899 8.869109 TGATTAGGTTCCTGAATGTTTTTGATT 58.131 29.630 1.12 0.00 0.00 2.57
3034 3900 8.421249 TGATTAGGTTCCTGAATGTTTTTGAT 57.579 30.769 1.12 0.00 0.00 2.57
3035 3901 7.831691 TGATTAGGTTCCTGAATGTTTTTGA 57.168 32.000 1.12 0.00 0.00 2.69
3036 3902 8.885494 TTTGATTAGGTTCCTGAATGTTTTTG 57.115 30.769 1.12 0.00 0.00 2.44
3039 3905 9.710900 GAATTTTGATTAGGTTCCTGAATGTTT 57.289 29.630 1.12 0.00 0.00 2.83
3040 3906 8.314021 GGAATTTTGATTAGGTTCCTGAATGTT 58.686 33.333 1.12 0.00 36.32 2.71
3041 3907 7.454380 TGGAATTTTGATTAGGTTCCTGAATGT 59.546 33.333 1.12 0.00 39.21 2.71
3042 3908 7.839907 TGGAATTTTGATTAGGTTCCTGAATG 58.160 34.615 1.12 0.00 39.21 2.67
3043 3909 7.675619 ACTGGAATTTTGATTAGGTTCCTGAAT 59.324 33.333 13.79 0.00 39.07 2.57
3044 3910 7.010160 ACTGGAATTTTGATTAGGTTCCTGAA 58.990 34.615 13.79 0.00 39.07 3.02
3045 3911 6.434028 CACTGGAATTTTGATTAGGTTCCTGA 59.566 38.462 13.79 0.00 39.07 3.86
3046 3912 6.209391 ACACTGGAATTTTGATTAGGTTCCTG 59.791 38.462 1.12 0.00 41.12 3.86
3047 3913 6.314917 ACACTGGAATTTTGATTAGGTTCCT 58.685 36.000 0.00 0.00 39.21 3.36
3048 3914 6.590234 ACACTGGAATTTTGATTAGGTTCC 57.410 37.500 0.00 0.00 38.99 3.62
3049 3915 9.974980 TTTTACACTGGAATTTTGATTAGGTTC 57.025 29.630 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.