Multiple sequence alignment - TraesCS1D01G268200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G268200 chr1D 100.000 2681 0 0 1 2681 363855977 363858657 0.000000e+00 4951.0
1 TraesCS1D01G268200 chr1D 91.892 518 38 3 2017 2534 11044547 11044034 0.000000e+00 721.0
2 TraesCS1D01G268200 chr1D 91.707 205 10 3 779 978 363856179 363856381 7.310000e-71 278.0
3 TraesCS1D01G268200 chr1D 91.707 205 10 3 203 405 363856755 363856954 7.310000e-71 278.0
4 TraesCS1D01G268200 chr1D 82.667 150 24 2 1325 1473 363804065 363803917 6.020000e-27 132.0
5 TraesCS1D01G268200 chr1D 90.566 53 5 0 1905 1957 351909713 351909661 1.330000e-08 71.3
6 TraesCS1D01G268200 chr1B 94.122 1259 55 13 709 1961 487170199 487171444 0.000000e+00 1897.0
7 TraesCS1D01G268200 chr1B 91.739 690 56 1 1993 2681 256199299 256199988 0.000000e+00 957.0
8 TraesCS1D01G268200 chr1B 90.087 686 66 1 1996 2681 666846280 666845597 0.000000e+00 889.0
9 TraesCS1D01G268200 chr1B 89.826 688 68 2 1994 2681 615213330 615212645 0.000000e+00 881.0
10 TraesCS1D01G268200 chr1B 89.769 694 62 7 1991 2681 115449149 115448462 0.000000e+00 880.0
11 TraesCS1D01G268200 chr1B 90.732 205 12 3 203 405 487170265 487170464 1.580000e-67 267.0
12 TraesCS1D01G268200 chr1B 81.752 137 23 2 1332 1467 487021593 487021458 2.180000e-21 113.0
13 TraesCS1D01G268200 chr1B 97.561 41 1 0 641 681 487170157 487170197 1.330000e-08 71.3
14 TraesCS1D01G268200 chr1A 91.363 1042 58 17 742 1778 463194594 463195608 0.000000e+00 1397.0
15 TraesCS1D01G268200 chr1A 89.320 206 10 4 203 405 463194629 463194825 5.730000e-62 248.0
16 TraesCS1D01G268200 chr1A 77.487 191 41 2 1325 1514 463041301 463041112 2.180000e-21 113.0
17 TraesCS1D01G268200 chr3D 91.329 692 57 3 1991 2681 946247 945558 0.000000e+00 942.0
18 TraesCS1D01G268200 chr3D 90.741 54 2 3 1904 1955 341490795 341490847 4.790000e-08 69.4
19 TraesCS1D01G268200 chr3A 91.172 691 61 0 1991 2681 16259691 16260381 0.000000e+00 939.0
20 TraesCS1D01G268200 chr3A 92.982 57 1 3 1904 1958 461843857 461843802 2.210000e-11 80.5
21 TraesCS1D01G268200 chr2B 91.317 691 50 9 1991 2681 21532777 21533457 0.000000e+00 935.0
22 TraesCS1D01G268200 chr6B 89.855 690 66 4 1991 2680 548641033 548640348 0.000000e+00 883.0
23 TraesCS1D01G268200 chr6B 89.420 690 67 5 1992 2681 564317722 564317039 0.000000e+00 865.0
24 TraesCS1D01G268200 chr4A 92.391 92 7 0 113 204 160250181 160250272 6.020000e-27 132.0
25 TraesCS1D01G268200 chr4A 86.957 69 6 1 1894 1959 124222483 124222415 1.030000e-09 75.0
26 TraesCS1D01G268200 chr7B 94.118 85 5 0 120 204 714418718 714418634 2.170000e-26 130.0
27 TraesCS1D01G268200 chr7B 93.103 87 6 0 118 204 17654549 17654463 7.790000e-26 128.0
28 TraesCS1D01G268200 chr6D 94.048 84 5 0 121 204 26117861 26117944 7.790000e-26 128.0
29 TraesCS1D01G268200 chr2D 94.048 84 5 0 121 204 622392685 622392768 7.790000e-26 128.0
30 TraesCS1D01G268200 chr2D 90.217 92 9 0 113 204 309064462 309064371 1.300000e-23 121.0
31 TraesCS1D01G268200 chr4D 91.304 92 8 0 113 204 315084973 315084882 2.800000e-25 126.0
32 TraesCS1D01G268200 chrUn 91.954 87 7 0 118 204 17492106 17492020 3.620000e-24 122.0
33 TraesCS1D01G268200 chrUn 91.954 87 7 0 118 204 339822933 339822847 3.620000e-24 122.0
34 TraesCS1D01G268200 chr6A 96.429 56 2 0 1907 1962 531514337 531514392 2.840000e-15 93.5
35 TraesCS1D01G268200 chr7A 94.118 51 3 0 1907 1957 155307851 155307901 7.960000e-11 78.7
36 TraesCS1D01G268200 chr4B 90.909 55 5 0 1905 1959 424279578 424279632 1.030000e-09 75.0
37 TraesCS1D01G268200 chr5B 91.837 49 3 1 1904 1951 278250670 278250622 1.720000e-07 67.6
38 TraesCS1D01G268200 chr5B 97.222 36 1 0 1963 1998 685622745 685622780 8.010000e-06 62.1
39 TraesCS1D01G268200 chr7D 96.875 32 1 0 69 100 81909180 81909211 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G268200 chr1D 363855977 363858657 2680 False 1835.666667 4951 94.471333 1 2681 3 chr1D.!!$F1 2680
1 TraesCS1D01G268200 chr1D 11044034 11044547 513 True 721.000000 721 91.892000 2017 2534 1 chr1D.!!$R1 517
2 TraesCS1D01G268200 chr1B 256199299 256199988 689 False 957.000000 957 91.739000 1993 2681 1 chr1B.!!$F1 688
3 TraesCS1D01G268200 chr1B 666845597 666846280 683 True 889.000000 889 90.087000 1996 2681 1 chr1B.!!$R4 685
4 TraesCS1D01G268200 chr1B 615212645 615213330 685 True 881.000000 881 89.826000 1994 2681 1 chr1B.!!$R3 687
5 TraesCS1D01G268200 chr1B 115448462 115449149 687 True 880.000000 880 89.769000 1991 2681 1 chr1B.!!$R1 690
6 TraesCS1D01G268200 chr1B 487170157 487171444 1287 False 745.100000 1897 94.138333 203 1961 3 chr1B.!!$F2 1758
7 TraesCS1D01G268200 chr1A 463194594 463195608 1014 False 822.500000 1397 90.341500 203 1778 2 chr1A.!!$F1 1575
8 TraesCS1D01G268200 chr3D 945558 946247 689 True 942.000000 942 91.329000 1991 2681 1 chr3D.!!$R1 690
9 TraesCS1D01G268200 chr3A 16259691 16260381 690 False 939.000000 939 91.172000 1991 2681 1 chr3A.!!$F1 690
10 TraesCS1D01G268200 chr2B 21532777 21533457 680 False 935.000000 935 91.317000 1991 2681 1 chr2B.!!$F1 690
11 TraesCS1D01G268200 chr6B 548640348 548641033 685 True 883.000000 883 89.855000 1991 2680 1 chr6B.!!$R1 689
12 TraesCS1D01G268200 chr6B 564317039 564317722 683 True 865.000000 865 89.420000 1992 2681 1 chr6B.!!$R2 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.02811 CCTTTTGCGCCGAATCTAGC 59.972 55.0 4.18 0.0 0.0 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 1700 0.321122 CGGTCAGGAAGAAAGCAGCT 60.321 55.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.367444 CGAGATTTAATGTTAGGTTCTACAAGT 57.633 33.333 0.00 0.00 0.00 3.16
33 34 8.918202 AATGTTAGGTTCTACAAGTTGATTCA 57.082 30.769 10.54 0.00 0.00 2.57
34 35 8.918202 ATGTTAGGTTCTACAAGTTGATTCAA 57.082 30.769 10.54 0.00 0.00 2.69
35 36 8.378172 TGTTAGGTTCTACAAGTTGATTCAAG 57.622 34.615 10.54 0.00 0.00 3.02
36 37 8.208224 TGTTAGGTTCTACAAGTTGATTCAAGA 58.792 33.333 10.54 1.71 0.00 3.02
37 38 8.713271 GTTAGGTTCTACAAGTTGATTCAAGAG 58.287 37.037 10.54 0.00 0.00 2.85
38 39 6.831976 AGGTTCTACAAGTTGATTCAAGAGT 58.168 36.000 10.54 1.93 0.00 3.24
39 40 7.283329 AGGTTCTACAAGTTGATTCAAGAGTT 58.717 34.615 10.54 0.00 0.00 3.01
40 41 7.442666 AGGTTCTACAAGTTGATTCAAGAGTTC 59.557 37.037 10.54 0.00 0.00 3.01
41 42 7.226720 GGTTCTACAAGTTGATTCAAGAGTTCA 59.773 37.037 10.54 0.00 0.00 3.18
42 43 8.612619 GTTCTACAAGTTGATTCAAGAGTTCAA 58.387 33.333 10.54 0.00 0.00 2.69
43 44 8.908786 TCTACAAGTTGATTCAAGAGTTCAAT 57.091 30.769 10.54 0.00 32.48 2.57
44 45 8.777413 TCTACAAGTTGATTCAAGAGTTCAATG 58.223 33.333 10.54 0.00 32.48 2.82
45 46 7.572523 ACAAGTTGATTCAAGAGTTCAATGA 57.427 32.000 10.54 0.00 32.48 2.57
46 47 7.420800 ACAAGTTGATTCAAGAGTTCAATGAC 58.579 34.615 10.54 0.00 32.48 3.06
47 48 6.233430 AGTTGATTCAAGAGTTCAATGACG 57.767 37.500 0.00 0.00 32.48 4.35
48 49 4.668576 TGATTCAAGAGTTCAATGACGC 57.331 40.909 0.00 0.00 0.00 5.19
49 50 3.436704 TGATTCAAGAGTTCAATGACGCC 59.563 43.478 0.00 0.00 0.00 5.68
50 51 1.428448 TCAAGAGTTCAATGACGCCG 58.572 50.000 0.00 0.00 0.00 6.46
51 52 1.000394 TCAAGAGTTCAATGACGCCGA 60.000 47.619 0.00 0.00 0.00 5.54
52 53 1.126846 CAAGAGTTCAATGACGCCGAC 59.873 52.381 0.00 0.00 0.00 4.79
53 54 0.603569 AGAGTTCAATGACGCCGACT 59.396 50.000 0.00 0.00 0.00 4.18
54 55 0.716108 GAGTTCAATGACGCCGACTG 59.284 55.000 0.00 0.00 0.00 3.51
55 56 1.132640 GTTCAATGACGCCGACTGC 59.867 57.895 0.00 0.00 0.00 4.40
56 57 1.301322 TTCAATGACGCCGACTGCA 60.301 52.632 0.00 0.00 41.33 4.41
57 58 1.291184 TTCAATGACGCCGACTGCAG 61.291 55.000 13.48 13.48 41.33 4.41
58 59 3.121030 AATGACGCCGACTGCAGC 61.121 61.111 15.27 5.81 41.33 5.25
59 60 3.596066 AATGACGCCGACTGCAGCT 62.596 57.895 15.27 0.23 41.33 4.24
60 61 3.997064 ATGACGCCGACTGCAGCTC 62.997 63.158 15.27 9.81 41.33 4.09
64 65 4.074526 GCCGACTGCAGCTCCAGA 62.075 66.667 12.78 0.00 40.77 3.86
65 66 2.659016 CCGACTGCAGCTCCAGAA 59.341 61.111 12.78 0.00 36.67 3.02
66 67 1.739562 CCGACTGCAGCTCCAGAAC 60.740 63.158 12.78 4.15 36.67 3.01
67 68 1.005748 CGACTGCAGCTCCAGAACA 60.006 57.895 12.78 0.00 36.67 3.18
68 69 1.287730 CGACTGCAGCTCCAGAACAC 61.288 60.000 12.78 0.00 36.67 3.32
69 70 0.034616 GACTGCAGCTCCAGAACACT 59.965 55.000 12.78 0.00 36.67 3.55
70 71 1.273606 GACTGCAGCTCCAGAACACTA 59.726 52.381 12.78 0.00 36.67 2.74
71 72 1.274728 ACTGCAGCTCCAGAACACTAG 59.725 52.381 12.78 0.00 36.67 2.57
72 73 1.274728 CTGCAGCTCCAGAACACTAGT 59.725 52.381 0.00 0.00 34.77 2.57
73 74 1.273606 TGCAGCTCCAGAACACTAGTC 59.726 52.381 0.00 0.00 0.00 2.59
74 75 1.548269 GCAGCTCCAGAACACTAGTCT 59.452 52.381 0.00 0.00 0.00 3.24
75 76 2.028567 GCAGCTCCAGAACACTAGTCTT 60.029 50.000 0.00 0.00 0.00 3.01
76 77 3.556004 GCAGCTCCAGAACACTAGTCTTT 60.556 47.826 0.00 0.00 0.00 2.52
77 78 4.322049 GCAGCTCCAGAACACTAGTCTTTA 60.322 45.833 0.00 0.00 0.00 1.85
78 79 5.406649 CAGCTCCAGAACACTAGTCTTTAG 58.593 45.833 0.00 0.00 0.00 1.85
79 80 4.464597 AGCTCCAGAACACTAGTCTTTAGG 59.535 45.833 0.00 0.00 0.00 2.69
80 81 4.749976 CTCCAGAACACTAGTCTTTAGGC 58.250 47.826 0.00 0.00 0.00 3.93
81 82 3.192844 TCCAGAACACTAGTCTTTAGGCG 59.807 47.826 0.00 0.00 0.00 5.52
82 83 2.924290 CAGAACACTAGTCTTTAGGCGC 59.076 50.000 0.00 0.00 0.00 6.53
83 84 2.561419 AGAACACTAGTCTTTAGGCGCA 59.439 45.455 10.83 0.00 0.00 6.09
84 85 2.365408 ACACTAGTCTTTAGGCGCAC 57.635 50.000 10.83 0.00 0.00 5.34
85 86 1.269166 CACTAGTCTTTAGGCGCACG 58.731 55.000 10.83 0.00 0.00 5.34
86 87 0.886563 ACTAGTCTTTAGGCGCACGT 59.113 50.000 10.83 0.00 0.00 4.49
87 88 1.269166 CTAGTCTTTAGGCGCACGTG 58.731 55.000 12.28 12.28 0.00 4.49
88 89 0.734942 TAGTCTTTAGGCGCACGTGC 60.735 55.000 30.42 30.42 37.78 5.34
89 90 2.029815 TCTTTAGGCGCACGTGCA 59.970 55.556 37.03 17.66 42.21 4.57
90 91 2.173382 CTTTAGGCGCACGTGCAC 59.827 61.111 37.03 29.08 42.21 4.57
91 92 3.629491 CTTTAGGCGCACGTGCACG 62.629 63.158 37.03 35.99 46.33 5.34
92 93 4.649310 TTAGGCGCACGTGCACGA 62.649 61.111 42.94 23.27 43.02 4.35
93 94 4.649310 TAGGCGCACGTGCACGAA 62.649 61.111 42.94 20.25 43.02 3.85
96 97 4.702826 GCGCACGTGCACGAAGAC 62.703 66.667 42.94 26.03 43.02 3.01
97 98 3.030308 CGCACGTGCACGAAGACT 61.030 61.111 42.94 19.98 43.02 3.24
98 99 2.585869 CGCACGTGCACGAAGACTT 61.586 57.895 42.94 19.18 43.02 3.01
99 100 1.201825 GCACGTGCACGAAGACTTC 59.798 57.895 42.94 19.21 43.02 3.01
100 101 1.215655 GCACGTGCACGAAGACTTCT 61.216 55.000 42.94 17.58 43.02 2.85
101 102 0.778815 CACGTGCACGAAGACTTCTC 59.221 55.000 42.94 0.00 43.02 2.87
102 103 0.318784 ACGTGCACGAAGACTTCTCC 60.319 55.000 42.94 0.00 43.02 3.71
103 104 0.318699 CGTGCACGAAGACTTCTCCA 60.319 55.000 34.93 4.74 43.02 3.86
104 105 1.140816 GTGCACGAAGACTTCTCCAC 58.859 55.000 13.22 12.17 0.00 4.02
105 106 1.040646 TGCACGAAGACTTCTCCACT 58.959 50.000 13.22 0.00 0.00 4.00
106 107 1.269778 TGCACGAAGACTTCTCCACTG 60.270 52.381 13.22 0.00 0.00 3.66
107 108 1.269831 GCACGAAGACTTCTCCACTGT 60.270 52.381 13.22 0.00 0.00 3.55
108 109 2.667137 CACGAAGACTTCTCCACTGTC 58.333 52.381 13.22 0.00 0.00 3.51
109 110 2.294791 CACGAAGACTTCTCCACTGTCT 59.705 50.000 13.22 0.00 42.12 3.41
113 114 2.964209 AGACTTCTCCACTGTCTTCCA 58.036 47.619 0.00 0.00 37.76 3.53
114 115 2.630580 AGACTTCTCCACTGTCTTCCAC 59.369 50.000 0.00 0.00 37.76 4.02
115 116 1.341531 ACTTCTCCACTGTCTTCCACG 59.658 52.381 0.00 0.00 0.00 4.94
116 117 1.341531 CTTCTCCACTGTCTTCCACGT 59.658 52.381 0.00 0.00 0.00 4.49
117 118 0.959553 TCTCCACTGTCTTCCACGTC 59.040 55.000 0.00 0.00 0.00 4.34
118 119 0.673985 CTCCACTGTCTTCCACGTCA 59.326 55.000 0.00 0.00 0.00 4.35
119 120 0.387929 TCCACTGTCTTCCACGTCAC 59.612 55.000 0.00 0.00 0.00 3.67
120 121 0.600255 CCACTGTCTTCCACGTCACC 60.600 60.000 0.00 0.00 0.00 4.02
121 122 0.939577 CACTGTCTTCCACGTCACCG 60.940 60.000 0.00 0.00 40.83 4.94
122 123 2.022129 CTGTCTTCCACGTCACCGC 61.022 63.158 0.00 0.00 37.70 5.68
123 124 3.103911 GTCTTCCACGTCACCGCG 61.104 66.667 0.00 0.00 37.70 6.46
124 125 3.289062 TCTTCCACGTCACCGCGA 61.289 61.111 8.23 0.00 37.70 5.87
125 126 2.355363 CTTCCACGTCACCGCGAA 60.355 61.111 8.23 0.00 37.70 4.70
126 127 2.355363 TTCCACGTCACCGCGAAG 60.355 61.111 8.23 0.00 37.70 3.79
127 128 2.742710 CTTCCACGTCACCGCGAAGA 62.743 60.000 8.23 0.96 42.19 2.87
128 129 3.103911 CCACGTCACCGCGAAGAC 61.104 66.667 8.23 14.33 37.70 3.01
138 139 4.135493 GCGAAGACGTGAAGCCGC 62.135 66.667 0.00 0.00 41.98 6.53
139 140 2.733218 CGAAGACGTGAAGCCGCA 60.733 61.111 0.00 0.00 34.56 5.69
140 141 2.094659 CGAAGACGTGAAGCCGCAT 61.095 57.895 0.00 0.00 34.56 4.73
141 142 0.800683 CGAAGACGTGAAGCCGCATA 60.801 55.000 0.00 0.00 34.56 3.14
142 143 1.571919 GAAGACGTGAAGCCGCATAT 58.428 50.000 0.00 0.00 0.00 1.78
143 144 1.258982 GAAGACGTGAAGCCGCATATG 59.741 52.381 0.00 0.00 0.00 1.78
144 145 0.459899 AGACGTGAAGCCGCATATGA 59.540 50.000 6.97 0.00 0.00 2.15
145 146 0.577269 GACGTGAAGCCGCATATGAC 59.423 55.000 6.97 0.00 0.00 3.06
146 147 1.145759 ACGTGAAGCCGCATATGACG 61.146 55.000 6.97 9.57 0.00 4.35
147 148 0.869880 CGTGAAGCCGCATATGACGA 60.870 55.000 17.40 0.00 0.00 4.20
148 149 1.286501 GTGAAGCCGCATATGACGAA 58.713 50.000 17.40 0.44 0.00 3.85
149 150 1.004927 GTGAAGCCGCATATGACGAAC 60.005 52.381 17.40 10.84 0.00 3.95
150 151 0.582005 GAAGCCGCATATGACGAACC 59.418 55.000 17.40 8.16 0.00 3.62
151 152 1.151777 AAGCCGCATATGACGAACCG 61.152 55.000 17.40 6.23 0.00 4.44
152 153 1.881252 GCCGCATATGACGAACCGT 60.881 57.895 17.40 0.00 45.10 4.83
153 154 1.924335 CCGCATATGACGAACCGTG 59.076 57.895 17.40 0.85 41.37 4.94
154 155 1.487452 CCGCATATGACGAACCGTGG 61.487 60.000 17.40 0.00 41.37 4.94
155 156 1.487452 CGCATATGACGAACCGTGGG 61.487 60.000 6.97 0.00 41.37 4.61
156 157 1.772063 GCATATGACGAACCGTGGGC 61.772 60.000 6.97 0.00 41.37 5.36
157 158 0.179084 CATATGACGAACCGTGGGCT 60.179 55.000 0.00 0.00 41.37 5.19
158 159 0.539986 ATATGACGAACCGTGGGCTT 59.460 50.000 0.00 0.00 41.37 4.35
159 160 0.108520 TATGACGAACCGTGGGCTTC 60.109 55.000 0.00 0.00 41.37 3.86
160 161 2.029964 GACGAACCGTGGGCTTCA 59.970 61.111 0.00 0.00 41.37 3.02
161 162 1.595929 GACGAACCGTGGGCTTCAA 60.596 57.895 0.00 0.00 41.37 2.69
162 163 1.566018 GACGAACCGTGGGCTTCAAG 61.566 60.000 0.00 0.00 41.37 3.02
163 164 1.301401 CGAACCGTGGGCTTCAAGA 60.301 57.895 0.00 0.00 0.00 3.02
164 165 0.673644 CGAACCGTGGGCTTCAAGAT 60.674 55.000 0.00 0.00 0.00 2.40
165 166 0.804989 GAACCGTGGGCTTCAAGATG 59.195 55.000 0.00 0.00 0.00 2.90
166 167 0.609131 AACCGTGGGCTTCAAGATGG 60.609 55.000 0.00 0.00 0.00 3.51
167 168 2.409870 CCGTGGGCTTCAAGATGGC 61.410 63.158 0.00 1.53 0.00 4.40
168 169 2.753966 CGTGGGCTTCAAGATGGCG 61.754 63.158 0.00 0.00 32.83 5.69
169 170 1.675641 GTGGGCTTCAAGATGGCGT 60.676 57.895 0.00 0.00 32.83 5.68
170 171 1.377202 TGGGCTTCAAGATGGCGTC 60.377 57.895 0.00 0.00 32.83 5.19
171 172 1.078143 GGGCTTCAAGATGGCGTCT 60.078 57.895 2.64 2.64 39.43 4.18
173 174 0.729690 GGCTTCAAGATGGCGTCTTC 59.270 55.000 18.84 8.02 45.35 2.87
174 175 1.442769 GCTTCAAGATGGCGTCTTCA 58.557 50.000 18.84 3.58 45.35 3.02
175 176 1.806542 GCTTCAAGATGGCGTCTTCAA 59.193 47.619 18.84 12.17 45.35 2.69
176 177 2.159599 GCTTCAAGATGGCGTCTTCAAG 60.160 50.000 23.83 23.83 44.96 3.02
177 178 3.329386 CTTCAAGATGGCGTCTTCAAGA 58.671 45.455 23.83 13.99 44.97 3.02
178 179 3.401033 TCAAGATGGCGTCTTCAAGAA 57.599 42.857 18.84 0.67 45.35 2.52
179 180 3.329386 TCAAGATGGCGTCTTCAAGAAG 58.671 45.455 18.84 7.36 45.35 2.85
180 181 2.393271 AGATGGCGTCTTCAAGAAGG 57.607 50.000 2.64 0.00 38.88 3.46
181 182 1.065854 AGATGGCGTCTTCAAGAAGGG 60.066 52.381 2.64 4.19 38.88 3.95
182 183 0.035056 ATGGCGTCTTCAAGAAGGGG 60.035 55.000 9.73 3.88 38.88 4.79
183 184 1.125093 TGGCGTCTTCAAGAAGGGGA 61.125 55.000 9.73 0.00 38.88 4.81
184 185 0.673956 GGCGTCTTCAAGAAGGGGAC 60.674 60.000 9.73 1.28 38.88 4.46
185 186 1.014564 GCGTCTTCAAGAAGGGGACG 61.015 60.000 14.77 14.77 38.43 4.79
186 187 0.601558 CGTCTTCAAGAAGGGGACGA 59.398 55.000 14.21 0.00 37.97 4.20
187 188 1.669211 CGTCTTCAAGAAGGGGACGAC 60.669 57.143 14.21 3.41 37.97 4.34
188 189 1.343465 GTCTTCAAGAAGGGGACGACA 59.657 52.381 9.73 0.00 38.88 4.35
189 190 1.343465 TCTTCAAGAAGGGGACGACAC 59.657 52.381 9.73 0.00 38.88 3.67
190 191 0.395312 TTCAAGAAGGGGACGACACC 59.605 55.000 0.00 0.00 40.50 4.16
191 192 1.374252 CAAGAAGGGGACGACACCG 60.374 63.158 0.00 0.00 45.76 4.94
192 193 2.580601 AAGAAGGGGACGACACCGG 61.581 63.158 0.00 0.00 45.76 5.28
193 194 2.993264 GAAGGGGACGACACCGGA 60.993 66.667 9.46 0.00 45.76 5.14
194 195 2.995574 AAGGGGACGACACCGGAG 60.996 66.667 9.46 1.26 45.76 4.63
214 215 3.753434 CCGCCACTCTCGAGCTGT 61.753 66.667 7.81 6.31 0.00 4.40
215 216 2.259818 CGCCACTCTCGAGCTGTT 59.740 61.111 7.81 0.00 0.00 3.16
216 217 2.091112 CGCCACTCTCGAGCTGTTG 61.091 63.158 7.81 6.36 0.00 3.33
217 218 1.290324 GCCACTCTCGAGCTGTTGA 59.710 57.895 7.81 0.00 0.00 3.18
218 219 0.319900 GCCACTCTCGAGCTGTTGAA 60.320 55.000 7.81 0.00 0.00 2.69
219 220 1.423395 CCACTCTCGAGCTGTTGAAC 58.577 55.000 7.81 0.00 0.00 3.18
220 221 1.269778 CCACTCTCGAGCTGTTGAACA 60.270 52.381 7.81 0.00 0.00 3.18
224 225 2.922387 CTCTCGAGCTGTTGAACAGATG 59.078 50.000 27.97 16.08 45.93 2.90
225 226 1.392853 CTCGAGCTGTTGAACAGATGC 59.607 52.381 27.97 14.20 45.93 3.91
226 227 1.150827 CGAGCTGTTGAACAGATGCA 58.849 50.000 27.97 0.00 45.93 3.96
227 228 1.532437 CGAGCTGTTGAACAGATGCAA 59.468 47.619 27.97 0.00 45.93 4.08
228 229 2.161012 CGAGCTGTTGAACAGATGCAAT 59.839 45.455 27.97 6.43 45.93 3.56
229 230 3.499048 GAGCTGTTGAACAGATGCAATG 58.501 45.455 27.97 0.99 45.93 2.82
230 231 3.057736 GAGCTGTTGAACAGATGCAATGT 60.058 43.478 27.97 2.25 45.93 2.71
231 232 4.558095 GAGCTGTTGAACAGATGCAATGTT 60.558 41.667 27.97 17.70 45.93 2.71
232 233 6.019302 GAGCTGTTGAACAGATGCAATGTTT 61.019 40.000 27.97 4.59 45.93 2.83
233 234 7.445778 GAGCTGTTGAACAGATGCAATGTTTT 61.446 38.462 27.97 1.54 45.93 2.43
234 235 9.137287 GAGCTGTTGAACAGATGCAATGTTTTC 62.137 40.741 27.97 6.12 45.93 2.29
235 236 5.049167 TGTTGAACAGATGCAATGTTTTCC 58.951 37.500 18.44 9.26 40.86 3.13
236 237 5.163426 TGTTGAACAGATGCAATGTTTTCCT 60.163 36.000 18.44 0.26 40.86 3.36
237 238 5.534207 TGAACAGATGCAATGTTTTCCTT 57.466 34.783 18.44 0.00 40.86 3.36
238 239 6.647334 TGAACAGATGCAATGTTTTCCTTA 57.353 33.333 18.44 3.48 40.86 2.69
239 240 7.230849 TGAACAGATGCAATGTTTTCCTTAT 57.769 32.000 18.44 0.00 40.86 1.73
240 241 7.092079 TGAACAGATGCAATGTTTTCCTTATG 58.908 34.615 18.44 0.00 40.86 1.90
241 242 6.594788 ACAGATGCAATGTTTTCCTTATGT 57.405 33.333 2.25 0.00 0.00 2.29
242 243 6.392354 ACAGATGCAATGTTTTCCTTATGTG 58.608 36.000 2.25 0.00 0.00 3.21
243 244 6.015180 ACAGATGCAATGTTTTCCTTATGTGT 60.015 34.615 2.25 0.00 0.00 3.72
244 245 6.869913 CAGATGCAATGTTTTCCTTATGTGTT 59.130 34.615 0.00 0.00 0.00 3.32
245 246 7.385752 CAGATGCAATGTTTTCCTTATGTGTTT 59.614 33.333 0.00 0.00 0.00 2.83
246 247 7.933033 AGATGCAATGTTTTCCTTATGTGTTTT 59.067 29.630 0.00 0.00 0.00 2.43
247 248 7.856145 TGCAATGTTTTCCTTATGTGTTTTT 57.144 28.000 0.00 0.00 0.00 1.94
248 249 7.914465 TGCAATGTTTTCCTTATGTGTTTTTC 58.086 30.769 0.00 0.00 0.00 2.29
249 250 7.768120 TGCAATGTTTTCCTTATGTGTTTTTCT 59.232 29.630 0.00 0.00 0.00 2.52
250 251 8.611757 GCAATGTTTTCCTTATGTGTTTTTCTT 58.388 29.630 0.00 0.00 0.00 2.52
255 256 9.982291 GTTTTCCTTATGTGTTTTTCTTTTTCC 57.018 29.630 0.00 0.00 0.00 3.13
256 257 9.952030 TTTTCCTTATGTGTTTTTCTTTTTCCT 57.048 25.926 0.00 0.00 0.00 3.36
257 258 9.952030 TTTCCTTATGTGTTTTTCTTTTTCCTT 57.048 25.926 0.00 0.00 0.00 3.36
258 259 9.952030 TTCCTTATGTGTTTTTCTTTTTCCTTT 57.048 25.926 0.00 0.00 0.00 3.11
259 260 9.952030 TCCTTATGTGTTTTTCTTTTTCCTTTT 57.048 25.926 0.00 0.00 0.00 2.27
260 261 9.986833 CCTTATGTGTTTTTCTTTTTCCTTTTG 57.013 29.630 0.00 0.00 0.00 2.44
261 262 9.489393 CTTATGTGTTTTTCTTTTTCCTTTTGC 57.511 29.630 0.00 0.00 0.00 3.68
262 263 5.921429 TGTGTTTTTCTTTTTCCTTTTGCG 58.079 33.333 0.00 0.00 0.00 4.85
263 264 4.786068 GTGTTTTTCTTTTTCCTTTTGCGC 59.214 37.500 0.00 0.00 0.00 6.09
264 265 4.142795 TGTTTTTCTTTTTCCTTTTGCGCC 60.143 37.500 4.18 0.00 0.00 6.53
265 266 1.846541 TTCTTTTTCCTTTTGCGCCG 58.153 45.000 4.18 0.00 0.00 6.46
266 267 1.025812 TCTTTTTCCTTTTGCGCCGA 58.974 45.000 4.18 0.00 0.00 5.54
267 268 1.405821 TCTTTTTCCTTTTGCGCCGAA 59.594 42.857 4.18 0.00 0.00 4.30
268 269 2.035321 TCTTTTTCCTTTTGCGCCGAAT 59.965 40.909 4.18 0.00 0.00 3.34
269 270 2.058913 TTTTCCTTTTGCGCCGAATC 57.941 45.000 4.18 0.00 0.00 2.52
270 271 1.243902 TTTCCTTTTGCGCCGAATCT 58.756 45.000 4.18 0.00 0.00 2.40
271 272 2.102070 TTCCTTTTGCGCCGAATCTA 57.898 45.000 4.18 0.00 0.00 1.98
272 273 1.651987 TCCTTTTGCGCCGAATCTAG 58.348 50.000 4.18 0.00 0.00 2.43
273 274 0.028110 CCTTTTGCGCCGAATCTAGC 59.972 55.000 4.18 0.00 0.00 3.42
274 275 0.726827 CTTTTGCGCCGAATCTAGCA 59.273 50.000 4.18 0.00 37.89 3.49
275 276 0.446222 TTTTGCGCCGAATCTAGCAC 59.554 50.000 4.18 0.00 39.51 4.40
276 277 1.366111 TTTGCGCCGAATCTAGCACC 61.366 55.000 4.18 0.00 39.51 5.01
277 278 3.330853 GCGCCGAATCTAGCACCG 61.331 66.667 0.00 0.00 0.00 4.94
278 279 2.411701 CGCCGAATCTAGCACCGA 59.588 61.111 0.00 0.00 0.00 4.69
279 280 1.944676 CGCCGAATCTAGCACCGAC 60.945 63.158 0.00 0.00 0.00 4.79
280 281 1.437986 GCCGAATCTAGCACCGACT 59.562 57.895 0.00 0.00 0.00 4.18
281 282 0.595310 GCCGAATCTAGCACCGACTC 60.595 60.000 0.00 0.00 0.00 3.36
282 283 0.030908 CCGAATCTAGCACCGACTCC 59.969 60.000 0.00 0.00 0.00 3.85
283 284 1.025812 CGAATCTAGCACCGACTCCT 58.974 55.000 0.00 0.00 0.00 3.69
284 285 2.219458 CGAATCTAGCACCGACTCCTA 58.781 52.381 0.00 0.00 0.00 2.94
285 286 2.031857 CGAATCTAGCACCGACTCCTAC 60.032 54.545 0.00 0.00 0.00 3.18
286 287 1.984066 ATCTAGCACCGACTCCTACC 58.016 55.000 0.00 0.00 0.00 3.18
287 288 0.463295 TCTAGCACCGACTCCTACCG 60.463 60.000 0.00 0.00 0.00 4.02
288 289 0.747283 CTAGCACCGACTCCTACCGT 60.747 60.000 0.00 0.00 0.00 4.83
289 290 0.541392 TAGCACCGACTCCTACCGTA 59.459 55.000 0.00 0.00 0.00 4.02
290 291 0.106819 AGCACCGACTCCTACCGTAT 60.107 55.000 0.00 0.00 0.00 3.06
291 292 0.310232 GCACCGACTCCTACCGTATC 59.690 60.000 0.00 0.00 0.00 2.24
292 293 0.585357 CACCGACTCCTACCGTATCG 59.415 60.000 0.00 0.00 0.00 2.92
293 294 0.179000 ACCGACTCCTACCGTATCGT 59.821 55.000 0.00 0.00 0.00 3.73
294 295 0.585357 CCGACTCCTACCGTATCGTG 59.415 60.000 0.00 0.00 0.00 4.35
295 296 0.041488 CGACTCCTACCGTATCGTGC 60.041 60.000 0.00 0.00 0.00 5.34
296 297 0.041488 GACTCCTACCGTATCGTGCG 60.041 60.000 0.00 0.00 0.00 5.34
297 298 1.370172 CTCCTACCGTATCGTGCGC 60.370 63.158 0.00 0.00 0.00 6.09
298 299 2.055310 CTCCTACCGTATCGTGCGCA 62.055 60.000 5.66 5.66 0.00 6.09
299 300 1.226745 CCTACCGTATCGTGCGCAA 60.227 57.895 14.00 0.00 0.00 4.85
300 301 0.596600 CCTACCGTATCGTGCGCAAT 60.597 55.000 14.00 5.55 0.00 3.56
301 302 1.335233 CCTACCGTATCGTGCGCAATA 60.335 52.381 14.00 4.29 0.00 1.90
302 303 1.976728 CTACCGTATCGTGCGCAATAG 59.023 52.381 14.00 7.11 0.00 1.73
303 304 1.213094 ACCGTATCGTGCGCAATAGC 61.213 55.000 14.00 0.00 37.71 2.97
304 305 1.487231 CGTATCGTGCGCAATAGCC 59.513 57.895 14.00 0.00 37.52 3.93
305 306 0.939577 CGTATCGTGCGCAATAGCCT 60.940 55.000 14.00 0.47 37.52 4.58
306 307 0.508641 GTATCGTGCGCAATAGCCTG 59.491 55.000 14.00 0.00 37.52 4.85
307 308 0.387565 TATCGTGCGCAATAGCCTGA 59.612 50.000 14.00 1.74 37.52 3.86
308 309 0.461870 ATCGTGCGCAATAGCCTGAA 60.462 50.000 14.00 0.00 37.52 3.02
309 310 1.083806 TCGTGCGCAATAGCCTGAAG 61.084 55.000 14.00 0.00 37.52 3.02
310 311 1.083806 CGTGCGCAATAGCCTGAAGA 61.084 55.000 14.00 0.00 37.52 2.87
311 312 1.086696 GTGCGCAATAGCCTGAAGAA 58.913 50.000 14.00 0.00 37.52 2.52
312 313 1.468520 GTGCGCAATAGCCTGAAGAAA 59.531 47.619 14.00 0.00 37.52 2.52
313 314 1.739466 TGCGCAATAGCCTGAAGAAAG 59.261 47.619 8.16 0.00 37.52 2.62
314 315 2.009774 GCGCAATAGCCTGAAGAAAGA 58.990 47.619 0.30 0.00 37.52 2.52
315 316 2.420022 GCGCAATAGCCTGAAGAAAGAA 59.580 45.455 0.30 0.00 37.52 2.52
316 317 3.119849 GCGCAATAGCCTGAAGAAAGAAA 60.120 43.478 0.30 0.00 37.52 2.52
317 318 4.656041 CGCAATAGCCTGAAGAAAGAAAG 58.344 43.478 0.00 0.00 37.52 2.62
318 319 4.437930 CGCAATAGCCTGAAGAAAGAAAGG 60.438 45.833 0.00 0.00 37.52 3.11
319 320 4.142293 GCAATAGCCTGAAGAAAGAAAGGG 60.142 45.833 0.00 0.00 33.58 3.95
320 321 1.916506 AGCCTGAAGAAAGAAAGGGC 58.083 50.000 0.00 0.00 38.50 5.19
321 322 0.891373 GCCTGAAGAAAGAAAGGGCC 59.109 55.000 0.00 0.00 32.86 5.80
322 323 1.823250 GCCTGAAGAAAGAAAGGGCCA 60.823 52.381 6.18 0.00 32.86 5.36
323 324 1.889170 CCTGAAGAAAGAAAGGGCCAC 59.111 52.381 6.18 0.00 0.00 5.01
324 325 1.537202 CTGAAGAAAGAAAGGGCCACG 59.463 52.381 6.18 0.00 0.00 4.94
325 326 1.133915 TGAAGAAAGAAAGGGCCACGT 60.134 47.619 6.18 0.00 0.00 4.49
326 327 1.266989 GAAGAAAGAAAGGGCCACGTG 59.733 52.381 9.08 9.08 0.00 4.49
327 328 0.537371 AGAAAGAAAGGGCCACGTGG 60.537 55.000 30.66 30.66 38.53 4.94
328 329 0.536460 GAAAGAAAGGGCCACGTGGA 60.536 55.000 38.30 0.00 37.39 4.02
329 330 0.822121 AAAGAAAGGGCCACGTGGAC 60.822 55.000 38.30 35.96 44.61 4.02
330 331 1.705997 AAGAAAGGGCCACGTGGACT 61.706 55.000 38.20 29.41 44.77 3.85
331 332 1.228154 GAAAGGGCCACGTGGACTT 60.228 57.895 38.20 32.69 44.77 3.01
332 333 1.228154 AAAGGGCCACGTGGACTTC 60.228 57.895 38.20 23.72 44.77 3.01
333 334 2.692273 AAAGGGCCACGTGGACTTCC 62.692 60.000 38.20 28.40 44.77 3.46
334 335 4.717313 GGGCCACGTGGACTTCCC 62.717 72.222 38.20 31.64 44.77 3.97
335 336 3.637273 GGCCACGTGGACTTCCCT 61.637 66.667 38.30 0.00 41.12 4.20
336 337 2.047179 GCCACGTGGACTTCCCTC 60.047 66.667 38.30 13.83 37.39 4.30
337 338 2.584391 GCCACGTGGACTTCCCTCT 61.584 63.158 38.30 0.00 37.39 3.69
338 339 2.058675 CCACGTGGACTTCCCTCTT 58.941 57.895 31.31 0.00 37.39 2.85
339 340 0.320771 CCACGTGGACTTCCCTCTTG 60.321 60.000 31.31 0.00 37.39 3.02
340 341 0.320771 CACGTGGACTTCCCTCTTGG 60.321 60.000 7.95 0.00 35.38 3.61
341 342 1.376037 CGTGGACTTCCCTCTTGGC 60.376 63.158 0.00 0.00 35.38 4.52
342 343 1.761174 GTGGACTTCCCTCTTGGCA 59.239 57.895 0.00 0.00 35.38 4.92
343 344 0.329596 GTGGACTTCCCTCTTGGCAT 59.670 55.000 0.00 0.00 35.38 4.40
344 345 1.075601 TGGACTTCCCTCTTGGCATT 58.924 50.000 0.00 0.00 35.38 3.56
345 346 1.004745 TGGACTTCCCTCTTGGCATTC 59.995 52.381 0.00 0.00 35.38 2.67
346 347 1.283321 GGACTTCCCTCTTGGCATTCT 59.717 52.381 0.00 0.00 0.00 2.40
347 348 2.363683 GACTTCCCTCTTGGCATTCTG 58.636 52.381 0.00 0.00 0.00 3.02
348 349 1.988107 ACTTCCCTCTTGGCATTCTGA 59.012 47.619 0.00 0.00 0.00 3.27
349 350 2.290577 ACTTCCCTCTTGGCATTCTGAC 60.291 50.000 0.00 0.00 0.00 3.51
350 351 0.250234 TCCCTCTTGGCATTCTGACG 59.750 55.000 0.00 0.00 0.00 4.35
351 352 0.036010 CCCTCTTGGCATTCTGACGT 60.036 55.000 0.00 0.00 0.00 4.34
352 353 1.363744 CCTCTTGGCATTCTGACGTC 58.636 55.000 9.11 9.11 0.00 4.34
353 354 0.994995 CTCTTGGCATTCTGACGTCG 59.005 55.000 11.62 6.07 0.00 5.12
354 355 1.014044 TCTTGGCATTCTGACGTCGC 61.014 55.000 11.62 7.46 0.00 5.19
355 356 1.291184 CTTGGCATTCTGACGTCGCA 61.291 55.000 11.62 0.00 0.00 5.10
356 357 1.291184 TTGGCATTCTGACGTCGCAG 61.291 55.000 11.62 4.36 37.24 5.18
357 358 2.397252 GCATTCTGACGTCGCAGC 59.603 61.111 11.62 6.79 35.86 5.25
358 359 2.382746 GCATTCTGACGTCGCAGCA 61.383 57.895 11.62 0.00 35.86 4.41
359 360 1.706301 CATTCTGACGTCGCAGCAG 59.294 57.895 11.62 2.76 35.86 4.24
360 361 0.733909 CATTCTGACGTCGCAGCAGA 60.734 55.000 11.62 5.40 36.92 4.26
361 362 0.174389 ATTCTGACGTCGCAGCAGAT 59.826 50.000 11.62 0.00 38.35 2.90
362 363 0.038251 TTCTGACGTCGCAGCAGATT 60.038 50.000 11.62 0.00 38.35 2.40
363 364 0.733909 TCTGACGTCGCAGCAGATTG 60.734 55.000 11.62 0.00 34.02 2.67
364 365 2.288926 CTGACGTCGCAGCAGATTGC 62.289 60.000 11.62 0.00 45.46 3.56
380 381 7.864307 GCAGATTGCATACTTATCAATTTCC 57.136 36.000 0.00 0.00 44.26 3.13
381 382 7.655490 GCAGATTGCATACTTATCAATTTCCT 58.345 34.615 0.00 0.00 44.26 3.36
382 383 8.139989 GCAGATTGCATACTTATCAATTTCCTT 58.860 33.333 0.00 0.00 44.26 3.36
410 411 9.547279 TTAAATACATCTATCCATCTGCTAGGA 57.453 33.333 0.00 0.00 38.50 2.94
411 412 7.658525 AATACATCTATCCATCTGCTAGGAG 57.341 40.000 4.60 4.60 37.34 3.69
412 413 5.009436 ACATCTATCCATCTGCTAGGAGT 57.991 43.478 11.39 0.00 37.34 3.85
413 414 5.016173 ACATCTATCCATCTGCTAGGAGTC 58.984 45.833 11.39 0.00 37.34 3.36
414 415 5.222316 ACATCTATCCATCTGCTAGGAGTCT 60.222 44.000 11.39 0.00 37.34 3.24
415 416 5.332106 TCTATCCATCTGCTAGGAGTCTT 57.668 43.478 11.39 0.00 37.34 3.01
416 417 5.710646 TCTATCCATCTGCTAGGAGTCTTT 58.289 41.667 11.39 0.00 37.34 2.52
417 418 4.686191 ATCCATCTGCTAGGAGTCTTTG 57.314 45.455 11.39 5.44 37.34 2.77
418 419 3.713003 TCCATCTGCTAGGAGTCTTTGA 58.287 45.455 11.39 0.14 0.00 2.69
419 420 3.449018 TCCATCTGCTAGGAGTCTTTGAC 59.551 47.826 11.39 0.00 0.00 3.18
420 421 3.450457 CCATCTGCTAGGAGTCTTTGACT 59.550 47.826 11.39 0.00 46.42 3.41
421 422 4.081198 CCATCTGCTAGGAGTCTTTGACTT 60.081 45.833 11.39 0.00 43.53 3.01
422 423 4.792521 TCTGCTAGGAGTCTTTGACTTC 57.207 45.455 11.39 0.00 43.53 3.01
423 424 3.511934 TCTGCTAGGAGTCTTTGACTTCC 59.488 47.826 11.39 5.23 43.53 3.46
424 425 3.239449 TGCTAGGAGTCTTTGACTTCCA 58.761 45.455 14.07 0.00 43.53 3.53
425 426 3.646162 TGCTAGGAGTCTTTGACTTCCAA 59.354 43.478 14.07 0.00 43.53 3.53
426 427 4.102524 TGCTAGGAGTCTTTGACTTCCAAA 59.897 41.667 14.07 0.00 43.53 3.28
442 443 7.944729 ACTTCCAAAGTCATAAATACTGCAT 57.055 32.000 0.00 0.00 37.02 3.96
444 445 9.632638 ACTTCCAAAGTCATAAATACTGCATAT 57.367 29.630 0.00 0.00 37.02 1.78
446 447 9.851686 TTCCAAAGTCATAAATACTGCATATCT 57.148 29.630 0.00 0.00 0.00 1.98
447 448 9.276590 TCCAAAGTCATAAATACTGCATATCTG 57.723 33.333 0.00 0.00 0.00 2.90
448 449 9.060347 CCAAAGTCATAAATACTGCATATCTGT 57.940 33.333 0.00 0.00 0.00 3.41
449 450 9.874215 CAAAGTCATAAATACTGCATATCTGTG 57.126 33.333 0.00 0.00 0.00 3.66
450 451 7.664082 AGTCATAAATACTGCATATCTGTGC 57.336 36.000 0.00 0.00 45.25 4.57
461 462 5.936686 GCATATCTGTGCAGTAACATGAT 57.063 39.130 0.00 0.00 44.43 2.45
462 463 5.924786 GCATATCTGTGCAGTAACATGATC 58.075 41.667 0.00 0.00 44.43 2.92
463 464 5.106791 GCATATCTGTGCAGTAACATGATCC 60.107 44.000 0.00 0.00 44.43 3.36
464 465 3.979101 TCTGTGCAGTAACATGATCCA 57.021 42.857 0.00 0.00 0.00 3.41
465 466 4.284829 TCTGTGCAGTAACATGATCCAA 57.715 40.909 0.00 0.00 0.00 3.53
466 467 4.650734 TCTGTGCAGTAACATGATCCAAA 58.349 39.130 0.00 0.00 0.00 3.28
467 468 5.069318 TCTGTGCAGTAACATGATCCAAAA 58.931 37.500 0.00 0.00 0.00 2.44
468 469 5.534278 TCTGTGCAGTAACATGATCCAAAAA 59.466 36.000 0.00 0.00 0.00 1.94
469 470 5.527951 TGTGCAGTAACATGATCCAAAAAC 58.472 37.500 0.00 0.00 0.00 2.43
470 471 5.301551 TGTGCAGTAACATGATCCAAAAACT 59.698 36.000 0.00 0.00 0.00 2.66
471 472 6.183360 TGTGCAGTAACATGATCCAAAAACTT 60.183 34.615 0.00 0.00 0.00 2.66
472 473 6.701400 GTGCAGTAACATGATCCAAAAACTTT 59.299 34.615 0.00 0.00 0.00 2.66
473 474 6.922957 TGCAGTAACATGATCCAAAAACTTTC 59.077 34.615 0.00 0.00 0.00 2.62
474 475 6.922957 GCAGTAACATGATCCAAAAACTTTCA 59.077 34.615 0.00 0.00 0.00 2.69
475 476 7.437862 GCAGTAACATGATCCAAAAACTTTCAA 59.562 33.333 0.00 0.00 0.00 2.69
476 477 9.311916 CAGTAACATGATCCAAAAACTTTCAAA 57.688 29.630 0.00 0.00 0.00 2.69
477 478 9.883142 AGTAACATGATCCAAAAACTTTCAAAA 57.117 25.926 0.00 0.00 0.00 2.44
521 522 9.612066 AAAAATCATGAAACTTGTAAACCATGT 57.388 25.926 0.00 0.00 34.63 3.21
522 523 9.612066 AAAATCATGAAACTTGTAAACCATGTT 57.388 25.926 0.00 0.00 41.68 2.71
612 613 9.971922 TTTTTGAAAAATGGTCACAAAACATTT 57.028 22.222 0.00 0.00 44.18 2.32
643 644 9.715121 AAAAGTTCACGTTTTATACTATCTCCA 57.285 29.630 0.00 0.00 0.00 3.86
644 645 9.886132 AAAGTTCACGTTTTATACTATCTCCAT 57.114 29.630 0.00 0.00 0.00 3.41
648 649 8.014070 TCACGTTTTATACTATCTCCATTCCA 57.986 34.615 0.00 0.00 0.00 3.53
681 682 8.133024 TGAATTTAGCCTACCAAAATGTCATT 57.867 30.769 0.00 0.00 0.00 2.57
682 683 8.250332 TGAATTTAGCCTACCAAAATGTCATTC 58.750 33.333 0.00 0.00 0.00 2.67
683 684 7.961326 ATTTAGCCTACCAAAATGTCATTCT 57.039 32.000 0.00 0.00 0.00 2.40
684 685 9.474313 AATTTAGCCTACCAAAATGTCATTCTA 57.526 29.630 0.00 0.00 0.00 2.10
685 686 8.871629 TTTAGCCTACCAAAATGTCATTCTAA 57.128 30.769 0.00 0.00 0.00 2.10
686 687 8.871629 TTAGCCTACCAAAATGTCATTCTAAA 57.128 30.769 0.00 0.00 0.00 1.85
687 688 7.396540 AGCCTACCAAAATGTCATTCTAAAG 57.603 36.000 0.00 0.00 0.00 1.85
688 689 6.036470 GCCTACCAAAATGTCATTCTAAAGC 58.964 40.000 0.00 0.00 0.00 3.51
689 690 6.127619 GCCTACCAAAATGTCATTCTAAAGCT 60.128 38.462 0.00 0.00 0.00 3.74
690 691 7.067008 GCCTACCAAAATGTCATTCTAAAGCTA 59.933 37.037 0.00 0.00 0.00 3.32
691 692 8.616076 CCTACCAAAATGTCATTCTAAAGCTAG 58.384 37.037 0.00 0.00 0.00 3.42
692 693 9.167311 CTACCAAAATGTCATTCTAAAGCTAGT 57.833 33.333 0.00 0.00 0.00 2.57
694 695 9.686683 ACCAAAATGTCATTCTAAAGCTAGTAT 57.313 29.630 0.00 0.00 0.00 2.12
705 706 9.794719 ATTCTAAAGCTAGTATATTTTGGGACC 57.205 33.333 0.00 0.00 0.00 4.46
706 707 7.439381 TCTAAAGCTAGTATATTTTGGGACCG 58.561 38.462 0.00 0.00 0.00 4.79
707 708 4.618920 AGCTAGTATATTTTGGGACCGG 57.381 45.455 0.00 0.00 0.00 5.28
711 712 3.124861 AGTATATTTTGGGACCGGGGAA 58.875 45.455 6.32 0.00 0.00 3.97
759 760 3.132824 CCTTGATTACCAAAAGATGCCCC 59.867 47.826 0.00 0.00 33.76 5.80
1004 1009 9.649024 GTACGTTTACAAGCTTCTATCTACTAG 57.351 37.037 0.00 0.00 0.00 2.57
1005 1010 8.278729 ACGTTTACAAGCTTCTATCTACTAGT 57.721 34.615 0.00 0.00 0.00 2.57
1006 1011 9.388506 ACGTTTACAAGCTTCTATCTACTAGTA 57.611 33.333 0.00 1.89 0.00 1.82
1007 1012 9.649024 CGTTTACAAGCTTCTATCTACTAGTAC 57.351 37.037 0.00 0.00 0.00 2.73
1074 1079 6.091986 CCTCTCTGACATAAAAGTTCTTGCTC 59.908 42.308 0.00 0.00 0.00 4.26
1098 1103 2.310538 AGCAAACCAAGTGGAGAAAGG 58.689 47.619 3.83 0.00 38.94 3.11
1103 1108 3.229697 ACCAAGTGGAGAAAGGAAAGG 57.770 47.619 3.83 0.00 38.94 3.11
1107 1112 3.147553 AGTGGAGAAAGGAAAGGAAGC 57.852 47.619 0.00 0.00 0.00 3.86
1113 1118 4.878971 GGAGAAAGGAAAGGAAGCATACTC 59.121 45.833 0.00 0.00 0.00 2.59
1146 1151 1.198094 ACACCACCCACCGATCATGA 61.198 55.000 0.00 0.00 0.00 3.07
1226 1231 2.671177 CGCAGGTTTGTGCTCCTCG 61.671 63.158 0.00 0.00 41.62 4.63
1518 1523 8.084073 CCTCATGATTACAAAGTGTCAAACAAT 58.916 33.333 0.00 0.00 0.00 2.71
1691 1700 6.428465 TGCTATGTACTTTCATGGACGAAAAA 59.572 34.615 0.00 0.00 34.59 1.94
1694 1703 4.819630 TGTACTTTCATGGACGAAAAAGCT 59.180 37.500 0.00 0.00 34.59 3.74
1706 1715 3.243201 ACGAAAAAGCTGCTTTCTTCCTG 60.243 43.478 26.17 18.89 31.99 3.86
1709 1718 1.902938 AAGCTGCTTTCTTCCTGACC 58.097 50.000 9.53 0.00 0.00 4.02
1778 1787 7.556996 AGAGTTATAGGTAGTCGACAACAGAAT 59.443 37.037 19.50 6.45 0.00 2.40
1783 1792 6.092955 AGGTAGTCGACAACAGAATTAACA 57.907 37.500 19.50 0.00 0.00 2.41
1852 1861 4.415596 TGGGCATGACTGGTAAGAAAAAT 58.584 39.130 0.00 0.00 0.00 1.82
1877 1886 1.134560 GTACATGAGGAGGACGGACAC 59.865 57.143 0.00 0.00 0.00 3.67
1889 1898 2.125512 GGACACCTAGCCGCAGTG 60.126 66.667 6.65 6.65 37.53 3.66
1963 1972 9.802039 AAATACCTACTTTTTACATCACTTGGA 57.198 29.630 0.00 0.00 0.00 3.53
1964 1973 9.449719 AATACCTACTTTTTACATCACTTGGAG 57.550 33.333 0.00 0.00 0.00 3.86
1965 1974 5.705905 ACCTACTTTTTACATCACTTGGAGC 59.294 40.000 0.00 0.00 0.00 4.70
1966 1975 5.705441 CCTACTTTTTACATCACTTGGAGCA 59.295 40.000 0.00 0.00 0.00 4.26
1967 1976 6.375455 CCTACTTTTTACATCACTTGGAGCAT 59.625 38.462 0.00 0.00 0.00 3.79
1968 1977 6.259550 ACTTTTTACATCACTTGGAGCATC 57.740 37.500 0.00 0.00 0.00 3.91
1979 1988 2.511600 GAGCATCCCCAACGGACG 60.512 66.667 0.00 0.00 46.09 4.79
1987 1996 3.955101 CCAACGGACGCGCCAAAA 61.955 61.111 5.73 0.00 35.94 2.44
1988 1997 2.426752 CAACGGACGCGCCAAAAG 60.427 61.111 5.73 0.00 35.94 2.27
1989 1998 2.589442 AACGGACGCGCCAAAAGA 60.589 55.556 5.73 0.00 35.94 2.52
2079 2090 3.808036 GCGGAAAATAGCGGCAGA 58.192 55.556 1.45 0.00 0.00 4.26
2096 2107 0.108992 AGAACGCGCGGTAGATTTGA 60.109 50.000 35.22 0.00 0.00 2.69
2513 2526 4.147322 CGTGCGGACCACATTCGC 62.147 66.667 0.00 0.00 44.91 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.367444 ACTTGTAGAACCTAACATTAAATCTCG 57.633 33.333 0.00 0.00 0.00 4.04
8 9 8.918202 TGAATCAACTTGTAGAACCTAACATT 57.082 30.769 0.00 0.00 0.00 2.71
9 10 8.918202 TTGAATCAACTTGTAGAACCTAACAT 57.082 30.769 0.00 0.00 0.00 2.71
10 11 8.208224 TCTTGAATCAACTTGTAGAACCTAACA 58.792 33.333 0.00 0.00 0.00 2.41
11 12 8.603242 TCTTGAATCAACTTGTAGAACCTAAC 57.397 34.615 0.00 0.00 0.00 2.34
12 13 8.429641 ACTCTTGAATCAACTTGTAGAACCTAA 58.570 33.333 0.00 0.00 0.00 2.69
13 14 7.963532 ACTCTTGAATCAACTTGTAGAACCTA 58.036 34.615 0.00 0.00 0.00 3.08
14 15 6.831976 ACTCTTGAATCAACTTGTAGAACCT 58.168 36.000 0.00 0.00 0.00 3.50
15 16 7.226720 TGAACTCTTGAATCAACTTGTAGAACC 59.773 37.037 0.00 0.00 0.00 3.62
16 17 8.142994 TGAACTCTTGAATCAACTTGTAGAAC 57.857 34.615 0.00 0.00 0.00 3.01
17 18 8.731275 TTGAACTCTTGAATCAACTTGTAGAA 57.269 30.769 0.00 0.00 0.00 2.10
18 19 8.777413 CATTGAACTCTTGAATCAACTTGTAGA 58.223 33.333 0.00 0.00 36.03 2.59
19 20 8.777413 TCATTGAACTCTTGAATCAACTTGTAG 58.223 33.333 0.00 0.00 36.03 2.74
20 21 8.559536 GTCATTGAACTCTTGAATCAACTTGTA 58.440 33.333 0.00 0.00 36.03 2.41
21 22 7.420800 GTCATTGAACTCTTGAATCAACTTGT 58.579 34.615 0.00 0.00 36.03 3.16
22 23 6.576313 CGTCATTGAACTCTTGAATCAACTTG 59.424 38.462 0.00 0.00 36.03 3.16
23 24 6.662616 CGTCATTGAACTCTTGAATCAACTT 58.337 36.000 0.00 0.00 36.03 2.66
24 25 5.334414 GCGTCATTGAACTCTTGAATCAACT 60.334 40.000 0.00 0.00 36.03 3.16
25 26 4.848299 GCGTCATTGAACTCTTGAATCAAC 59.152 41.667 0.00 0.00 36.03 3.18
26 27 4.083324 GGCGTCATTGAACTCTTGAATCAA 60.083 41.667 0.00 0.00 37.47 2.57
27 28 3.436704 GGCGTCATTGAACTCTTGAATCA 59.563 43.478 0.00 0.00 0.00 2.57
28 29 3.484229 CGGCGTCATTGAACTCTTGAATC 60.484 47.826 0.00 0.00 0.00 2.52
29 30 2.416547 CGGCGTCATTGAACTCTTGAAT 59.583 45.455 0.00 0.00 0.00 2.57
30 31 1.798223 CGGCGTCATTGAACTCTTGAA 59.202 47.619 0.00 0.00 0.00 2.69
31 32 1.000394 TCGGCGTCATTGAACTCTTGA 60.000 47.619 6.85 0.00 0.00 3.02
32 33 1.126846 GTCGGCGTCATTGAACTCTTG 59.873 52.381 6.85 0.00 0.00 3.02
33 34 1.000955 AGTCGGCGTCATTGAACTCTT 59.999 47.619 6.85 0.00 0.00 2.85
34 35 0.603569 AGTCGGCGTCATTGAACTCT 59.396 50.000 6.85 0.00 0.00 3.24
35 36 0.716108 CAGTCGGCGTCATTGAACTC 59.284 55.000 6.85 0.00 0.00 3.01
36 37 1.291877 GCAGTCGGCGTCATTGAACT 61.292 55.000 6.85 0.00 0.00 3.01
37 38 1.132640 GCAGTCGGCGTCATTGAAC 59.867 57.895 6.85 0.00 0.00 3.18
38 39 3.561429 GCAGTCGGCGTCATTGAA 58.439 55.556 6.85 0.00 0.00 2.69
47 48 3.596066 TTCTGGAGCTGCAGTCGGC 62.596 63.158 31.17 0.71 44.91 5.54
48 49 1.739562 GTTCTGGAGCTGCAGTCGG 60.740 63.158 31.17 10.38 0.00 4.79
49 50 1.005748 TGTTCTGGAGCTGCAGTCG 60.006 57.895 31.17 10.75 0.00 4.18
50 51 0.034616 AGTGTTCTGGAGCTGCAGTC 59.965 55.000 31.17 24.47 0.00 3.51
51 52 1.274728 CTAGTGTTCTGGAGCTGCAGT 59.725 52.381 31.17 16.51 0.00 4.40
52 53 1.274728 ACTAGTGTTCTGGAGCTGCAG 59.725 52.381 27.83 27.83 0.00 4.41
53 54 1.273606 GACTAGTGTTCTGGAGCTGCA 59.726 52.381 7.99 7.99 0.00 4.41
54 55 1.548269 AGACTAGTGTTCTGGAGCTGC 59.452 52.381 0.00 0.00 0.00 5.25
55 56 3.951775 AAGACTAGTGTTCTGGAGCTG 57.048 47.619 0.00 0.00 0.00 4.24
56 57 4.464597 CCTAAAGACTAGTGTTCTGGAGCT 59.535 45.833 14.78 0.00 0.00 4.09
57 58 4.749976 CCTAAAGACTAGTGTTCTGGAGC 58.250 47.826 14.78 0.00 0.00 4.70
58 59 4.675671 CGCCTAAAGACTAGTGTTCTGGAG 60.676 50.000 20.69 15.93 0.00 3.86
59 60 3.192844 CGCCTAAAGACTAGTGTTCTGGA 59.807 47.826 20.69 3.45 0.00 3.86
60 61 3.512680 CGCCTAAAGACTAGTGTTCTGG 58.487 50.000 5.63 11.67 0.00 3.86
61 62 2.924290 GCGCCTAAAGACTAGTGTTCTG 59.076 50.000 5.63 2.31 0.00 3.02
62 63 2.561419 TGCGCCTAAAGACTAGTGTTCT 59.439 45.455 4.18 0.00 0.00 3.01
63 64 2.666994 GTGCGCCTAAAGACTAGTGTTC 59.333 50.000 4.18 0.00 0.00 3.18
64 65 2.685100 GTGCGCCTAAAGACTAGTGTT 58.315 47.619 4.18 0.00 0.00 3.32
65 66 1.402456 CGTGCGCCTAAAGACTAGTGT 60.402 52.381 4.18 0.00 0.00 3.55
66 67 1.269166 CGTGCGCCTAAAGACTAGTG 58.731 55.000 4.18 0.00 0.00 2.74
67 68 0.886563 ACGTGCGCCTAAAGACTAGT 59.113 50.000 4.18 0.00 0.00 2.57
68 69 1.269166 CACGTGCGCCTAAAGACTAG 58.731 55.000 4.18 0.00 0.00 2.57
69 70 0.734942 GCACGTGCGCCTAAAGACTA 60.735 55.000 26.77 0.00 0.00 2.59
70 71 2.027625 GCACGTGCGCCTAAAGACT 61.028 57.895 26.77 0.00 0.00 3.24
71 72 2.314647 TGCACGTGCGCCTAAAGAC 61.315 57.895 33.22 5.81 45.83 3.01
72 73 2.029815 TGCACGTGCGCCTAAAGA 59.970 55.556 33.22 12.43 45.83 2.52
73 74 2.173382 GTGCACGTGCGCCTAAAG 59.827 61.111 37.48 0.62 45.15 1.85
80 81 2.466518 GAAGTCTTCGTGCACGTGCG 62.467 60.000 35.74 24.41 45.83 5.34
81 82 1.201825 GAAGTCTTCGTGCACGTGC 59.798 57.895 35.74 33.11 40.80 5.34
82 83 0.778815 GAGAAGTCTTCGTGCACGTG 59.221 55.000 35.74 28.05 40.80 4.49
83 84 0.318784 GGAGAAGTCTTCGTGCACGT 60.319 55.000 35.74 18.16 40.80 4.49
84 85 0.318699 TGGAGAAGTCTTCGTGCACG 60.319 55.000 32.76 32.76 41.45 5.34
85 86 1.140816 GTGGAGAAGTCTTCGTGCAC 58.859 55.000 6.82 6.82 34.02 4.57
86 87 1.040646 AGTGGAGAAGTCTTCGTGCA 58.959 50.000 6.94 4.86 34.02 4.57
87 88 1.269831 ACAGTGGAGAAGTCTTCGTGC 60.270 52.381 6.94 2.47 34.02 5.34
88 89 2.294791 AGACAGTGGAGAAGTCTTCGTG 59.705 50.000 6.94 4.23 39.45 4.35
89 90 2.588620 AGACAGTGGAGAAGTCTTCGT 58.411 47.619 6.94 0.00 39.45 3.85
90 91 3.651803 AAGACAGTGGAGAAGTCTTCG 57.348 47.619 6.94 0.00 46.47 3.79
93 94 2.630580 GTGGAAGACAGTGGAGAAGTCT 59.369 50.000 0.00 0.00 43.98 3.24
94 95 2.608261 CGTGGAAGACAGTGGAGAAGTC 60.608 54.545 0.00 0.00 0.00 3.01
95 96 1.341531 CGTGGAAGACAGTGGAGAAGT 59.658 52.381 0.00 0.00 0.00 3.01
96 97 1.341531 ACGTGGAAGACAGTGGAGAAG 59.658 52.381 0.00 0.00 0.00 2.85
97 98 1.340248 GACGTGGAAGACAGTGGAGAA 59.660 52.381 0.00 0.00 0.00 2.87
98 99 0.959553 GACGTGGAAGACAGTGGAGA 59.040 55.000 0.00 0.00 0.00 3.71
99 100 0.673985 TGACGTGGAAGACAGTGGAG 59.326 55.000 0.00 0.00 0.00 3.86
100 101 0.387929 GTGACGTGGAAGACAGTGGA 59.612 55.000 0.00 0.00 0.00 4.02
101 102 0.600255 GGTGACGTGGAAGACAGTGG 60.600 60.000 0.00 0.00 0.00 4.00
102 103 2.900528 GGTGACGTGGAAGACAGTG 58.099 57.895 0.00 0.00 0.00 3.66
115 116 1.606350 CTTCACGTCTTCGCGGTGAC 61.606 60.000 13.54 15.93 41.18 3.67
116 117 1.371267 CTTCACGTCTTCGCGGTGA 60.371 57.895 6.13 8.82 41.18 4.02
117 118 3.000080 GCTTCACGTCTTCGCGGTG 62.000 63.158 6.13 6.14 41.18 4.94
118 119 2.733593 GCTTCACGTCTTCGCGGT 60.734 61.111 6.13 0.00 41.18 5.68
119 120 3.479269 GGCTTCACGTCTTCGCGG 61.479 66.667 6.13 0.00 41.18 6.46
120 121 3.827784 CGGCTTCACGTCTTCGCG 61.828 66.667 0.00 0.00 41.18 5.87
121 122 4.135493 GCGGCTTCACGTCTTCGC 62.135 66.667 0.00 0.00 41.18 4.70
122 123 0.800683 TATGCGGCTTCACGTCTTCG 60.801 55.000 0.00 0.00 43.34 3.79
123 124 1.258982 CATATGCGGCTTCACGTCTTC 59.741 52.381 0.00 0.00 35.98 2.87
124 125 1.134818 TCATATGCGGCTTCACGTCTT 60.135 47.619 0.00 0.00 35.98 3.01
125 126 0.459899 TCATATGCGGCTTCACGTCT 59.540 50.000 0.00 0.00 35.98 4.18
126 127 0.577269 GTCATATGCGGCTTCACGTC 59.423 55.000 0.00 0.00 35.98 4.34
127 128 1.145759 CGTCATATGCGGCTTCACGT 61.146 55.000 0.00 0.00 35.98 4.49
128 129 0.869880 TCGTCATATGCGGCTTCACG 60.870 55.000 16.01 10.82 0.00 4.35
129 130 1.004927 GTTCGTCATATGCGGCTTCAC 60.005 52.381 16.01 0.26 0.00 3.18
130 131 1.286501 GTTCGTCATATGCGGCTTCA 58.713 50.000 16.01 0.00 0.00 3.02
131 132 0.582005 GGTTCGTCATATGCGGCTTC 59.418 55.000 16.01 7.28 0.00 3.86
132 133 1.151777 CGGTTCGTCATATGCGGCTT 61.152 55.000 16.01 0.00 0.00 4.35
133 134 1.591594 CGGTTCGTCATATGCGGCT 60.592 57.895 16.01 0.00 0.00 5.52
134 135 1.881252 ACGGTTCGTCATATGCGGC 60.881 57.895 16.01 0.00 33.69 6.53
135 136 1.487452 CCACGGTTCGTCATATGCGG 61.487 60.000 16.01 3.72 38.32 5.69
136 137 1.487452 CCCACGGTTCGTCATATGCG 61.487 60.000 11.69 11.69 38.32 4.73
137 138 1.772063 GCCCACGGTTCGTCATATGC 61.772 60.000 0.00 0.00 38.32 3.14
138 139 0.179084 AGCCCACGGTTCGTCATATG 60.179 55.000 0.00 0.00 38.32 1.78
139 140 0.539986 AAGCCCACGGTTCGTCATAT 59.460 50.000 0.00 0.00 38.32 1.78
140 141 0.108520 GAAGCCCACGGTTCGTCATA 60.109 55.000 0.00 0.00 38.32 2.15
141 142 1.375523 GAAGCCCACGGTTCGTCAT 60.376 57.895 0.00 0.00 38.32 3.06
142 143 2.029964 GAAGCCCACGGTTCGTCA 59.970 61.111 0.00 0.00 38.32 4.35
146 147 0.804989 CATCTTGAAGCCCACGGTTC 59.195 55.000 0.00 0.00 45.00 3.62
147 148 0.609131 CCATCTTGAAGCCCACGGTT 60.609 55.000 0.00 0.00 0.00 4.44
148 149 1.002134 CCATCTTGAAGCCCACGGT 60.002 57.895 0.00 0.00 0.00 4.83
149 150 2.409870 GCCATCTTGAAGCCCACGG 61.410 63.158 0.00 0.00 0.00 4.94
150 151 2.753966 CGCCATCTTGAAGCCCACG 61.754 63.158 0.00 0.00 0.00 4.94
151 152 1.648467 GACGCCATCTTGAAGCCCAC 61.648 60.000 0.00 0.00 0.00 4.61
152 153 1.377202 GACGCCATCTTGAAGCCCA 60.377 57.895 0.00 0.00 0.00 5.36
153 154 0.678048 AAGACGCCATCTTGAAGCCC 60.678 55.000 0.00 0.00 46.44 5.19
154 155 2.859992 AAGACGCCATCTTGAAGCC 58.140 52.632 0.00 0.00 46.44 4.35
161 162 1.065854 CCCTTCTTGAAGACGCCATCT 60.066 52.381 11.53 0.00 40.46 2.90
162 163 1.373570 CCCTTCTTGAAGACGCCATC 58.626 55.000 11.53 0.00 0.00 3.51
163 164 0.035056 CCCCTTCTTGAAGACGCCAT 60.035 55.000 11.53 0.00 0.00 4.40
164 165 1.125093 TCCCCTTCTTGAAGACGCCA 61.125 55.000 11.53 0.00 0.00 5.69
165 166 0.673956 GTCCCCTTCTTGAAGACGCC 60.674 60.000 11.53 0.00 0.00 5.68
166 167 1.014564 CGTCCCCTTCTTGAAGACGC 61.015 60.000 11.53 0.00 43.07 5.19
167 168 3.123674 CGTCCCCTTCTTGAAGACG 57.876 57.895 11.53 9.80 43.52 4.18
168 169 1.343465 TGTCGTCCCCTTCTTGAAGAC 59.657 52.381 11.53 0.00 39.46 3.01
169 170 1.343465 GTGTCGTCCCCTTCTTGAAGA 59.657 52.381 11.53 0.00 0.00 2.87
170 171 1.608283 GGTGTCGTCCCCTTCTTGAAG 60.608 57.143 3.55 3.55 0.00 3.02
171 172 0.395312 GGTGTCGTCCCCTTCTTGAA 59.605 55.000 0.00 0.00 0.00 2.69
172 173 1.812686 CGGTGTCGTCCCCTTCTTGA 61.813 60.000 0.00 0.00 0.00 3.02
173 174 1.374252 CGGTGTCGTCCCCTTCTTG 60.374 63.158 0.00 0.00 0.00 3.02
174 175 2.580601 CCGGTGTCGTCCCCTTCTT 61.581 63.158 0.00 0.00 33.95 2.52
175 176 2.995574 CCGGTGTCGTCCCCTTCT 60.996 66.667 0.00 0.00 33.95 2.85
176 177 2.993264 TCCGGTGTCGTCCCCTTC 60.993 66.667 0.00 0.00 33.95 3.46
177 178 2.995574 CTCCGGTGTCGTCCCCTT 60.996 66.667 0.00 0.00 33.95 3.95
197 198 3.288308 AACAGCTCGAGAGTGGCGG 62.288 63.158 18.75 4.22 36.44 6.13
198 199 2.091112 CAACAGCTCGAGAGTGGCG 61.091 63.158 18.75 4.36 36.44 5.69
199 200 0.319900 TTCAACAGCTCGAGAGTGGC 60.320 55.000 18.75 0.00 0.00 5.01
200 201 1.269778 TGTTCAACAGCTCGAGAGTGG 60.270 52.381 18.75 11.48 0.00 4.00
201 202 2.057316 CTGTTCAACAGCTCGAGAGTG 58.943 52.381 18.75 14.92 39.62 3.51
202 203 1.957177 TCTGTTCAACAGCTCGAGAGT 59.043 47.619 18.75 11.05 45.54 3.24
203 204 2.713895 TCTGTTCAACAGCTCGAGAG 57.286 50.000 18.75 10.32 45.54 3.20
204 205 2.928301 GCATCTGTTCAACAGCTCGAGA 60.928 50.000 18.75 0.00 45.54 4.04
205 206 1.392853 GCATCTGTTCAACAGCTCGAG 59.607 52.381 13.15 8.45 45.54 4.04
206 207 1.270252 TGCATCTGTTCAACAGCTCGA 60.270 47.619 13.15 0.00 45.54 4.04
207 208 1.150827 TGCATCTGTTCAACAGCTCG 58.849 50.000 13.15 4.63 45.54 5.03
208 209 3.057736 ACATTGCATCTGTTCAACAGCTC 60.058 43.478 13.15 4.80 45.54 4.09
209 210 2.889045 ACATTGCATCTGTTCAACAGCT 59.111 40.909 13.15 0.00 45.54 4.24
210 211 3.293311 ACATTGCATCTGTTCAACAGC 57.707 42.857 13.15 2.82 45.54 4.40
212 213 5.049167 GGAAAACATTGCATCTGTTCAACA 58.951 37.500 13.66 0.00 35.84 3.33
213 214 5.291971 AGGAAAACATTGCATCTGTTCAAC 58.708 37.500 13.66 8.23 35.84 3.18
214 215 5.534207 AGGAAAACATTGCATCTGTTCAA 57.466 34.783 13.66 0.00 35.84 2.69
215 216 5.534207 AAGGAAAACATTGCATCTGTTCA 57.466 34.783 13.66 0.00 35.84 3.18
216 217 7.062605 CACATAAGGAAAACATTGCATCTGTTC 59.937 37.037 13.66 4.88 35.84 3.18
217 218 6.869913 CACATAAGGAAAACATTGCATCTGTT 59.130 34.615 8.85 8.85 38.44 3.16
218 219 6.015180 ACACATAAGGAAAACATTGCATCTGT 60.015 34.615 0.00 0.00 0.00 3.41
219 220 6.392354 ACACATAAGGAAAACATTGCATCTG 58.608 36.000 0.00 0.00 0.00 2.90
220 221 6.594788 ACACATAAGGAAAACATTGCATCT 57.405 33.333 0.00 0.00 0.00 2.90
221 222 7.656707 AAACACATAAGGAAAACATTGCATC 57.343 32.000 0.00 0.00 0.00 3.91
222 223 8.449251 AAAAACACATAAGGAAAACATTGCAT 57.551 26.923 0.00 0.00 0.00 3.96
223 224 7.768120 AGAAAAACACATAAGGAAAACATTGCA 59.232 29.630 0.00 0.00 0.00 4.08
224 225 8.141835 AGAAAAACACATAAGGAAAACATTGC 57.858 30.769 0.00 0.00 0.00 3.56
229 230 9.982291 GGAAAAAGAAAAACACATAAGGAAAAC 57.018 29.630 0.00 0.00 0.00 2.43
230 231 9.952030 AGGAAAAAGAAAAACACATAAGGAAAA 57.048 25.926 0.00 0.00 0.00 2.29
231 232 9.952030 AAGGAAAAAGAAAAACACATAAGGAAA 57.048 25.926 0.00 0.00 0.00 3.13
232 233 9.952030 AAAGGAAAAAGAAAAACACATAAGGAA 57.048 25.926 0.00 0.00 0.00 3.36
233 234 9.952030 AAAAGGAAAAAGAAAAACACATAAGGA 57.048 25.926 0.00 0.00 0.00 3.36
234 235 9.986833 CAAAAGGAAAAAGAAAAACACATAAGG 57.013 29.630 0.00 0.00 0.00 2.69
235 236 9.489393 GCAAAAGGAAAAAGAAAAACACATAAG 57.511 29.630 0.00 0.00 0.00 1.73
236 237 8.171840 CGCAAAAGGAAAAAGAAAAACACATAA 58.828 29.630 0.00 0.00 0.00 1.90
237 238 7.675170 GCGCAAAAGGAAAAAGAAAAACACATA 60.675 33.333 0.30 0.00 0.00 2.29
238 239 6.541969 CGCAAAAGGAAAAAGAAAAACACAT 58.458 32.000 0.00 0.00 0.00 3.21
239 240 5.615764 GCGCAAAAGGAAAAAGAAAAACACA 60.616 36.000 0.30 0.00 0.00 3.72
240 241 4.786068 GCGCAAAAGGAAAAAGAAAAACAC 59.214 37.500 0.30 0.00 0.00 3.32
241 242 4.142795 GGCGCAAAAGGAAAAAGAAAAACA 60.143 37.500 10.83 0.00 0.00 2.83
242 243 4.339429 GGCGCAAAAGGAAAAAGAAAAAC 58.661 39.130 10.83 0.00 0.00 2.43
243 244 3.062774 CGGCGCAAAAGGAAAAAGAAAAA 59.937 39.130 10.83 0.00 0.00 1.94
244 245 2.605366 CGGCGCAAAAGGAAAAAGAAAA 59.395 40.909 10.83 0.00 0.00 2.29
245 246 2.159226 TCGGCGCAAAAGGAAAAAGAAA 60.159 40.909 10.83 0.00 0.00 2.52
246 247 1.405821 TCGGCGCAAAAGGAAAAAGAA 59.594 42.857 10.83 0.00 0.00 2.52
247 248 1.025812 TCGGCGCAAAAGGAAAAAGA 58.974 45.000 10.83 0.00 0.00 2.52
248 249 1.846541 TTCGGCGCAAAAGGAAAAAG 58.153 45.000 10.83 0.00 0.00 2.27
249 250 2.035321 AGATTCGGCGCAAAAGGAAAAA 59.965 40.909 10.83 0.00 0.00 1.94
250 251 1.611491 AGATTCGGCGCAAAAGGAAAA 59.389 42.857 10.83 0.00 0.00 2.29
251 252 1.243902 AGATTCGGCGCAAAAGGAAA 58.756 45.000 10.83 0.00 0.00 3.13
252 253 2.006888 CTAGATTCGGCGCAAAAGGAA 58.993 47.619 10.83 4.60 0.00 3.36
253 254 1.651987 CTAGATTCGGCGCAAAAGGA 58.348 50.000 10.83 0.00 0.00 3.36
254 255 0.028110 GCTAGATTCGGCGCAAAAGG 59.972 55.000 10.83 0.00 0.00 3.11
255 256 0.726827 TGCTAGATTCGGCGCAAAAG 59.273 50.000 10.83 0.00 0.00 2.27
256 257 0.446222 GTGCTAGATTCGGCGCAAAA 59.554 50.000 10.83 2.28 38.62 2.44
257 258 1.366111 GGTGCTAGATTCGGCGCAAA 61.366 55.000 10.83 2.72 40.26 3.68
258 259 1.813753 GGTGCTAGATTCGGCGCAA 60.814 57.895 10.83 0.00 40.26 4.85
259 260 2.202878 GGTGCTAGATTCGGCGCA 60.203 61.111 10.83 0.00 40.26 6.09
260 261 3.330853 CGGTGCTAGATTCGGCGC 61.331 66.667 0.00 0.00 38.12 6.53
261 262 1.944676 GTCGGTGCTAGATTCGGCG 60.945 63.158 0.00 0.00 0.00 6.46
262 263 0.595310 GAGTCGGTGCTAGATTCGGC 60.595 60.000 0.00 0.00 0.00 5.54
263 264 0.030908 GGAGTCGGTGCTAGATTCGG 59.969 60.000 0.00 0.00 0.00 4.30
264 265 1.025812 AGGAGTCGGTGCTAGATTCG 58.974 55.000 0.00 0.00 0.00 3.34
265 266 2.293955 GGTAGGAGTCGGTGCTAGATTC 59.706 54.545 0.00 0.00 27.92 2.52
266 267 2.308690 GGTAGGAGTCGGTGCTAGATT 58.691 52.381 0.00 0.00 27.92 2.40
267 268 1.814634 CGGTAGGAGTCGGTGCTAGAT 60.815 57.143 0.00 0.00 27.92 1.98
268 269 0.463295 CGGTAGGAGTCGGTGCTAGA 60.463 60.000 0.00 0.00 27.92 2.43
269 270 0.747283 ACGGTAGGAGTCGGTGCTAG 60.747 60.000 0.00 0.00 27.92 3.42
270 271 0.541392 TACGGTAGGAGTCGGTGCTA 59.459 55.000 0.00 0.00 0.00 3.49
271 272 0.106819 ATACGGTAGGAGTCGGTGCT 60.107 55.000 0.00 0.00 0.00 4.40
272 273 0.310232 GATACGGTAGGAGTCGGTGC 59.690 60.000 0.00 0.00 0.00 5.01
273 274 0.585357 CGATACGGTAGGAGTCGGTG 59.415 60.000 1.90 0.00 0.00 4.94
274 275 0.179000 ACGATACGGTAGGAGTCGGT 59.821 55.000 12.02 0.00 36.68 4.69
275 276 0.585357 CACGATACGGTAGGAGTCGG 59.415 60.000 12.02 0.57 36.68 4.79
276 277 0.041488 GCACGATACGGTAGGAGTCG 60.041 60.000 7.20 7.20 38.21 4.18
277 278 0.041488 CGCACGATACGGTAGGAGTC 60.041 60.000 0.00 0.00 0.00 3.36
278 279 2.020131 CGCACGATACGGTAGGAGT 58.980 57.895 0.00 0.00 0.00 3.85
279 280 1.370172 GCGCACGATACGGTAGGAG 60.370 63.158 0.30 0.00 0.00 3.69
280 281 1.655885 TTGCGCACGATACGGTAGGA 61.656 55.000 11.12 0.00 0.00 2.94
281 282 0.596600 ATTGCGCACGATACGGTAGG 60.597 55.000 11.12 0.00 0.00 3.18
282 283 1.976728 CTATTGCGCACGATACGGTAG 59.023 52.381 11.12 0.00 0.00 3.18
283 284 1.927268 GCTATTGCGCACGATACGGTA 60.927 52.381 11.12 0.00 0.00 4.02
284 285 1.213094 GCTATTGCGCACGATACGGT 61.213 55.000 11.12 0.00 0.00 4.83
285 286 1.487231 GCTATTGCGCACGATACGG 59.513 57.895 11.12 0.00 0.00 4.02
286 287 0.939577 AGGCTATTGCGCACGATACG 60.940 55.000 11.12 2.14 40.82 3.06
287 288 0.508641 CAGGCTATTGCGCACGATAC 59.491 55.000 11.12 0.06 40.82 2.24
288 289 0.387565 TCAGGCTATTGCGCACGATA 59.612 50.000 11.12 5.46 40.82 2.92
289 290 0.461870 TTCAGGCTATTGCGCACGAT 60.462 50.000 11.12 4.26 40.82 3.73
290 291 1.079474 TTCAGGCTATTGCGCACGA 60.079 52.632 11.12 0.00 40.82 4.35
291 292 1.083806 TCTTCAGGCTATTGCGCACG 61.084 55.000 11.12 2.25 40.82 5.34
292 293 1.086696 TTCTTCAGGCTATTGCGCAC 58.913 50.000 11.12 0.00 40.82 5.34
293 294 1.739466 CTTTCTTCAGGCTATTGCGCA 59.261 47.619 5.66 5.66 40.82 6.09
294 295 2.009774 TCTTTCTTCAGGCTATTGCGC 58.990 47.619 0.00 0.00 40.82 6.09
295 296 4.437930 CCTTTCTTTCTTCAGGCTATTGCG 60.438 45.833 0.00 0.00 40.82 4.85
296 297 4.142293 CCCTTTCTTTCTTCAGGCTATTGC 60.142 45.833 0.00 0.00 38.76 3.56
297 298 4.142293 GCCCTTTCTTTCTTCAGGCTATTG 60.142 45.833 0.00 0.00 36.00 1.90
298 299 4.019858 GCCCTTTCTTTCTTCAGGCTATT 58.980 43.478 0.00 0.00 36.00 1.73
299 300 3.625853 GCCCTTTCTTTCTTCAGGCTAT 58.374 45.455 0.00 0.00 36.00 2.97
300 301 2.290960 GGCCCTTTCTTTCTTCAGGCTA 60.291 50.000 0.00 0.00 38.95 3.93
301 302 1.548809 GGCCCTTTCTTTCTTCAGGCT 60.549 52.381 0.00 0.00 38.95 4.58
302 303 0.891373 GGCCCTTTCTTTCTTCAGGC 59.109 55.000 0.00 0.00 38.21 4.85
303 304 1.889170 GTGGCCCTTTCTTTCTTCAGG 59.111 52.381 0.00 0.00 0.00 3.86
304 305 1.537202 CGTGGCCCTTTCTTTCTTCAG 59.463 52.381 0.00 0.00 0.00 3.02
305 306 1.133915 ACGTGGCCCTTTCTTTCTTCA 60.134 47.619 0.00 0.00 0.00 3.02
306 307 1.266989 CACGTGGCCCTTTCTTTCTTC 59.733 52.381 7.95 0.00 0.00 2.87
307 308 1.318576 CACGTGGCCCTTTCTTTCTT 58.681 50.000 7.95 0.00 0.00 2.52
308 309 0.537371 CCACGTGGCCCTTTCTTTCT 60.537 55.000 24.02 0.00 0.00 2.52
309 310 0.536460 TCCACGTGGCCCTTTCTTTC 60.536 55.000 30.25 0.00 34.44 2.62
310 311 0.822121 GTCCACGTGGCCCTTTCTTT 60.822 55.000 30.25 0.00 34.44 2.52
311 312 1.228154 GTCCACGTGGCCCTTTCTT 60.228 57.895 30.25 0.00 34.44 2.52
312 313 1.705997 AAGTCCACGTGGCCCTTTCT 61.706 55.000 30.25 16.03 34.44 2.52
313 314 1.228154 AAGTCCACGTGGCCCTTTC 60.228 57.895 30.25 14.18 34.44 2.62
314 315 1.228154 GAAGTCCACGTGGCCCTTT 60.228 57.895 30.25 19.07 34.44 3.11
315 316 2.430367 GAAGTCCACGTGGCCCTT 59.570 61.111 30.25 29.24 34.44 3.95
316 317 3.637273 GGAAGTCCACGTGGCCCT 61.637 66.667 30.25 23.20 35.64 5.19
317 318 4.717313 GGGAAGTCCACGTGGCCC 62.717 72.222 30.25 27.97 37.91 5.80
318 319 3.607370 GAGGGAAGTCCACGTGGCC 62.607 68.421 30.25 23.39 38.24 5.36
319 320 2.047179 GAGGGAAGTCCACGTGGC 60.047 66.667 30.25 23.26 38.24 5.01
320 321 0.320771 CAAGAGGGAAGTCCACGTGG 60.321 60.000 29.26 29.26 38.24 4.94
321 322 0.320771 CCAAGAGGGAAGTCCACGTG 60.321 60.000 9.08 9.08 40.01 4.49
322 323 2.058675 CCAAGAGGGAAGTCCACGT 58.941 57.895 0.00 0.00 40.01 4.49
323 324 1.376037 GCCAAGAGGGAAGTCCACG 60.376 63.158 0.00 0.00 40.01 4.94
324 325 0.329596 ATGCCAAGAGGGAAGTCCAC 59.670 55.000 0.00 0.00 39.40 4.02
325 326 1.004745 GAATGCCAAGAGGGAAGTCCA 59.995 52.381 0.00 0.00 39.40 4.02
326 327 1.283321 AGAATGCCAAGAGGGAAGTCC 59.717 52.381 0.00 0.00 40.42 3.85
327 328 2.026822 TCAGAATGCCAAGAGGGAAGTC 60.027 50.000 0.00 0.00 39.79 3.01
328 329 1.988107 TCAGAATGCCAAGAGGGAAGT 59.012 47.619 0.00 0.00 39.40 3.01
329 330 2.363683 GTCAGAATGCCAAGAGGGAAG 58.636 52.381 0.00 0.00 39.40 3.46
330 331 1.339055 CGTCAGAATGCCAAGAGGGAA 60.339 52.381 0.00 0.00 39.40 3.97
331 332 0.250234 CGTCAGAATGCCAAGAGGGA 59.750 55.000 0.00 0.00 40.67 4.20
332 333 0.036010 ACGTCAGAATGCCAAGAGGG 60.036 55.000 0.00 0.00 40.85 4.30
333 334 1.363744 GACGTCAGAATGCCAAGAGG 58.636 55.000 11.55 0.00 34.76 3.69
334 335 0.994995 CGACGTCAGAATGCCAAGAG 59.005 55.000 17.16 0.00 34.76 2.85
335 336 1.014044 GCGACGTCAGAATGCCAAGA 61.014 55.000 17.16 0.00 34.76 3.02
336 337 1.291184 TGCGACGTCAGAATGCCAAG 61.291 55.000 17.16 0.00 34.76 3.61
337 338 1.291184 CTGCGACGTCAGAATGCCAA 61.291 55.000 17.16 0.00 36.19 4.52
338 339 1.737735 CTGCGACGTCAGAATGCCA 60.738 57.895 17.16 1.12 36.19 4.92
339 340 3.084579 CTGCGACGTCAGAATGCC 58.915 61.111 17.16 0.00 36.19 4.40
340 341 2.288926 CTGCTGCGACGTCAGAATGC 62.289 60.000 17.16 10.83 36.19 3.56
341 342 0.733909 TCTGCTGCGACGTCAGAATG 60.734 55.000 17.16 0.00 36.19 2.67
342 343 0.174389 ATCTGCTGCGACGTCAGAAT 59.826 50.000 17.16 8.87 39.88 2.40
343 344 0.038251 AATCTGCTGCGACGTCAGAA 60.038 50.000 17.16 10.53 39.88 3.02
344 345 0.733909 CAATCTGCTGCGACGTCAGA 60.734 55.000 17.16 11.28 40.62 3.27
345 346 1.706301 CAATCTGCTGCGACGTCAG 59.294 57.895 17.16 8.18 37.15 3.51
346 347 2.382746 GCAATCTGCTGCGACGTCA 61.383 57.895 17.16 0.00 40.96 4.35
347 348 1.699656 ATGCAATCTGCTGCGACGTC 61.700 55.000 5.18 5.18 45.74 4.34
348 349 0.460109 TATGCAATCTGCTGCGACGT 60.460 50.000 0.00 0.00 45.74 4.34
349 350 0.042708 GTATGCAATCTGCTGCGACG 60.043 55.000 0.00 0.00 45.74 5.12
350 351 1.293924 AGTATGCAATCTGCTGCGAC 58.706 50.000 0.00 0.00 45.74 5.19
351 352 2.028420 AAGTATGCAATCTGCTGCGA 57.972 45.000 0.00 0.00 45.74 5.10
352 353 3.495753 TGATAAGTATGCAATCTGCTGCG 59.504 43.478 0.00 0.00 45.74 5.18
353 354 5.428496 TTGATAAGTATGCAATCTGCTGC 57.572 39.130 0.00 0.00 45.31 5.25
354 355 7.594015 GGAAATTGATAAGTATGCAATCTGCTG 59.406 37.037 0.00 0.00 45.31 4.41
355 356 7.504911 AGGAAATTGATAAGTATGCAATCTGCT 59.495 33.333 0.00 0.00 45.31 4.24
356 357 7.655490 AGGAAATTGATAAGTATGCAATCTGC 58.345 34.615 0.00 0.00 45.29 4.26
384 385 9.547279 TCCTAGCAGATGGATAGATGTATTTAA 57.453 33.333 0.00 0.00 37.71 1.52
385 386 9.194972 CTCCTAGCAGATGGATAGATGTATTTA 57.805 37.037 0.00 0.00 37.71 1.40
386 387 7.677745 ACTCCTAGCAGATGGATAGATGTATTT 59.322 37.037 0.00 0.00 37.71 1.40
387 388 7.188381 ACTCCTAGCAGATGGATAGATGTATT 58.812 38.462 0.00 0.00 37.71 1.89
388 389 6.740693 ACTCCTAGCAGATGGATAGATGTAT 58.259 40.000 0.00 0.00 37.71 2.29
389 390 6.012069 AGACTCCTAGCAGATGGATAGATGTA 60.012 42.308 0.00 0.00 37.71 2.29
390 391 5.009436 ACTCCTAGCAGATGGATAGATGT 57.991 43.478 0.00 0.00 37.71 3.06
391 392 5.263599 AGACTCCTAGCAGATGGATAGATG 58.736 45.833 0.00 0.00 37.71 2.90
392 393 5.534914 AGACTCCTAGCAGATGGATAGAT 57.465 43.478 0.00 0.00 37.71 1.98
393 394 5.332106 AAGACTCCTAGCAGATGGATAGA 57.668 43.478 0.00 0.00 37.71 1.98
394 395 5.538053 TCAAAGACTCCTAGCAGATGGATAG 59.462 44.000 0.00 0.00 35.23 2.08
395 396 5.303078 GTCAAAGACTCCTAGCAGATGGATA 59.697 44.000 0.00 0.00 0.00 2.59
396 397 4.100808 GTCAAAGACTCCTAGCAGATGGAT 59.899 45.833 0.00 0.00 0.00 3.41
397 398 3.449018 GTCAAAGACTCCTAGCAGATGGA 59.551 47.826 0.00 0.00 0.00 3.41
398 399 3.450457 AGTCAAAGACTCCTAGCAGATGG 59.550 47.826 0.00 0.00 38.71 3.51
399 400 4.734398 AGTCAAAGACTCCTAGCAGATG 57.266 45.455 0.00 0.00 38.71 2.90
400 401 4.161377 GGAAGTCAAAGACTCCTAGCAGAT 59.839 45.833 0.00 0.00 42.59 2.90
401 402 3.511934 GGAAGTCAAAGACTCCTAGCAGA 59.488 47.826 0.00 0.00 42.59 4.26
402 403 3.259374 TGGAAGTCAAAGACTCCTAGCAG 59.741 47.826 0.00 0.00 42.59 4.24
403 404 3.239449 TGGAAGTCAAAGACTCCTAGCA 58.761 45.455 0.00 0.00 42.59 3.49
404 405 3.963428 TGGAAGTCAAAGACTCCTAGC 57.037 47.619 0.00 0.00 42.59 3.42
418 419 7.944729 ATGCAGTATTTATGACTTTGGAAGT 57.055 32.000 0.00 0.00 46.38 3.01
420 421 9.851686 AGATATGCAGTATTTATGACTTTGGAA 57.148 29.630 0.00 0.00 0.00 3.53
421 422 9.276590 CAGATATGCAGTATTTATGACTTTGGA 57.723 33.333 0.00 0.00 0.00 3.53
422 423 9.060347 ACAGATATGCAGTATTTATGACTTTGG 57.940 33.333 0.00 0.00 0.00 3.28
423 424 9.874215 CACAGATATGCAGTATTTATGACTTTG 57.126 33.333 0.00 0.00 0.00 2.77
424 425 8.562892 GCACAGATATGCAGTATTTATGACTTT 58.437 33.333 0.00 0.00 45.39 2.66
425 426 8.092521 GCACAGATATGCAGTATTTATGACTT 57.907 34.615 0.00 0.00 45.39 3.01
426 427 7.664082 GCACAGATATGCAGTATTTATGACT 57.336 36.000 0.00 0.00 45.39 3.41
439 440 5.106791 GGATCATGTTACTGCACAGATATGC 60.107 44.000 4.31 0.00 46.32 3.14
440 441 5.993441 TGGATCATGTTACTGCACAGATATG 59.007 40.000 4.31 3.83 0.00 1.78
441 442 6.178607 TGGATCATGTTACTGCACAGATAT 57.821 37.500 4.31 0.00 0.00 1.63
442 443 5.612725 TGGATCATGTTACTGCACAGATA 57.387 39.130 4.31 0.00 0.00 1.98
443 444 4.492494 TGGATCATGTTACTGCACAGAT 57.508 40.909 4.31 0.00 0.00 2.90
444 445 3.979101 TGGATCATGTTACTGCACAGA 57.021 42.857 4.31 0.00 0.00 3.41
445 446 5.375417 TTTTGGATCATGTTACTGCACAG 57.625 39.130 0.00 0.00 0.00 3.66
446 447 5.301551 AGTTTTTGGATCATGTTACTGCACA 59.698 36.000 0.00 0.00 0.00 4.57
447 448 5.772521 AGTTTTTGGATCATGTTACTGCAC 58.227 37.500 0.00 0.00 0.00 4.57
448 449 6.403866 AAGTTTTTGGATCATGTTACTGCA 57.596 33.333 0.00 0.00 0.00 4.41
449 450 6.922957 TGAAAGTTTTTGGATCATGTTACTGC 59.077 34.615 0.00 0.00 0.00 4.40
450 451 8.870160 TTGAAAGTTTTTGGATCATGTTACTG 57.130 30.769 0.00 0.00 0.00 2.74
451 452 9.883142 TTTTGAAAGTTTTTGGATCATGTTACT 57.117 25.926 0.00 0.00 0.00 2.24
495 496 9.612066 ACATGGTTTACAAGTTTCATGATTTTT 57.388 25.926 0.00 0.00 36.47 1.94
496 497 9.612066 AACATGGTTTACAAGTTTCATGATTTT 57.388 25.926 0.00 0.00 37.72 1.82
586 587 9.971922 AAATGTTTTGTGACCATTTTTCAAAAA 57.028 22.222 0.00 0.00 38.87 1.94
587 588 9.971922 AAAATGTTTTGTGACCATTTTTCAAAA 57.028 22.222 4.99 0.00 42.88 2.44
617 618 9.715121 TGGAGATAGTATAAAACGTGAACTTTT 57.285 29.630 0.00 0.00 0.00 2.27
618 619 9.886132 ATGGAGATAGTATAAAACGTGAACTTT 57.114 29.630 0.00 0.00 0.00 2.66
619 620 9.886132 AATGGAGATAGTATAAAACGTGAACTT 57.114 29.630 0.00 0.00 0.00 2.66
620 621 9.530633 GAATGGAGATAGTATAAAACGTGAACT 57.469 33.333 0.00 0.00 0.00 3.01
621 622 8.762426 GGAATGGAGATAGTATAAAACGTGAAC 58.238 37.037 0.00 0.00 0.00 3.18
622 623 8.479689 TGGAATGGAGATAGTATAAAACGTGAA 58.520 33.333 0.00 0.00 0.00 3.18
623 624 8.014070 TGGAATGGAGATAGTATAAAACGTGA 57.986 34.615 0.00 0.00 0.00 4.35
624 625 8.657074 TTGGAATGGAGATAGTATAAAACGTG 57.343 34.615 0.00 0.00 0.00 4.49
625 626 9.675464 TTTTGGAATGGAGATAGTATAAAACGT 57.325 29.630 0.00 0.00 0.00 3.99
681 682 7.439381 CGGTCCCAAAATATACTAGCTTTAGA 58.561 38.462 0.00 0.00 0.00 2.10
682 683 6.649557 CCGGTCCCAAAATATACTAGCTTTAG 59.350 42.308 0.00 0.00 0.00 1.85
683 684 6.464749 CCCGGTCCCAAAATATACTAGCTTTA 60.465 42.308 0.00 0.00 0.00 1.85
684 685 5.374071 CCGGTCCCAAAATATACTAGCTTT 58.626 41.667 0.00 0.00 0.00 3.51
685 686 4.202430 CCCGGTCCCAAAATATACTAGCTT 60.202 45.833 0.00 0.00 0.00 3.74
686 687 3.326880 CCCGGTCCCAAAATATACTAGCT 59.673 47.826 0.00 0.00 0.00 3.32
687 688 3.558533 CCCCGGTCCCAAAATATACTAGC 60.559 52.174 0.00 0.00 0.00 3.42
688 689 3.905591 TCCCCGGTCCCAAAATATACTAG 59.094 47.826 0.00 0.00 0.00 2.57
689 690 3.939042 TCCCCGGTCCCAAAATATACTA 58.061 45.455 0.00 0.00 0.00 1.82
690 691 2.779163 TCCCCGGTCCCAAAATATACT 58.221 47.619 0.00 0.00 0.00 2.12
691 692 3.581265 TTCCCCGGTCCCAAAATATAC 57.419 47.619 0.00 0.00 0.00 1.47
692 693 7.774694 ATATATTCCCCGGTCCCAAAATATA 57.225 36.000 0.00 5.51 0.00 0.86
693 694 6.668133 ATATATTCCCCGGTCCCAAAATAT 57.332 37.500 0.00 3.54 0.00 1.28
694 695 6.471942 AATATATTCCCCGGTCCCAAAATA 57.528 37.500 0.00 0.00 0.00 1.40
695 696 5.348259 AATATATTCCCCGGTCCCAAAAT 57.652 39.130 0.00 0.00 0.00 1.82
696 697 4.817874 AATATATTCCCCGGTCCCAAAA 57.182 40.909 0.00 0.00 0.00 2.44
697 698 4.817874 AAATATATTCCCCGGTCCCAAA 57.182 40.909 0.00 0.00 0.00 3.28
698 699 4.817874 AAAATATATTCCCCGGTCCCAA 57.182 40.909 0.00 0.00 0.00 4.12
699 700 5.164143 TCTAAAATATATTCCCCGGTCCCA 58.836 41.667 0.00 0.00 0.00 4.37
700 701 5.767277 TCTAAAATATATTCCCCGGTCCC 57.233 43.478 0.00 0.00 0.00 4.46
701 702 5.640783 CGTTCTAAAATATATTCCCCGGTCC 59.359 44.000 0.00 0.00 0.00 4.46
702 703 5.640783 CCGTTCTAAAATATATTCCCCGGTC 59.359 44.000 0.00 0.00 0.00 4.79
703 704 5.307716 TCCGTTCTAAAATATATTCCCCGGT 59.692 40.000 0.00 0.00 32.72 5.28
704 705 5.797051 TCCGTTCTAAAATATATTCCCCGG 58.203 41.667 0.00 0.00 0.00 5.73
705 706 5.873164 CCTCCGTTCTAAAATATATTCCCCG 59.127 44.000 0.00 0.00 0.00 5.73
706 707 6.776744 ACCTCCGTTCTAAAATATATTCCCC 58.223 40.000 0.00 0.00 0.00 4.81
707 708 8.591940 ACTACCTCCGTTCTAAAATATATTCCC 58.408 37.037 0.00 0.00 0.00 3.97
735 736 4.098501 GGGCATCTTTTGGTAATCAAGGAG 59.901 45.833 0.00 0.00 36.62 3.69
737 738 3.132824 GGGGCATCTTTTGGTAATCAAGG 59.867 47.826 0.00 0.00 36.62 3.61
738 739 3.768757 TGGGGCATCTTTTGGTAATCAAG 59.231 43.478 0.00 0.00 36.62 3.02
739 740 3.513515 GTGGGGCATCTTTTGGTAATCAA 59.486 43.478 0.00 0.00 0.00 2.57
740 741 3.096092 GTGGGGCATCTTTTGGTAATCA 58.904 45.455 0.00 0.00 0.00 2.57
759 760 7.811236 TCGAGAGTAGTAAATTACCAAACTGTG 59.189 37.037 7.76 2.16 0.00 3.66
1074 1079 3.071874 TCTCCACTTGGTTTGCTATGG 57.928 47.619 0.00 0.00 36.34 2.74
1098 1103 5.859557 GAAGTTTCGAGTATGCTTCCTTTC 58.140 41.667 0.00 0.00 31.97 2.62
1166 1171 7.436118 ACAATACAAGAATCAACACAAAGCAT 58.564 30.769 0.00 0.00 0.00 3.79
1172 1177 5.049060 CGGGAACAATACAAGAATCAACACA 60.049 40.000 0.00 0.00 0.00 3.72
1301 1306 3.047857 TGATATTCACCCAGCATCCTGA 58.952 45.455 0.00 0.00 41.77 3.86
1657 1666 6.682423 TGAAAGTACATAGCACATGATTGG 57.318 37.500 0.00 0.00 0.00 3.16
1663 1672 4.811024 CGTCCATGAAAGTACATAGCACAT 59.189 41.667 0.00 0.00 0.00 3.21
1664 1673 4.081917 TCGTCCATGAAAGTACATAGCACA 60.082 41.667 0.00 0.00 0.00 4.57
1665 1674 4.430007 TCGTCCATGAAAGTACATAGCAC 58.570 43.478 0.00 0.00 0.00 4.40
1667 1676 6.417191 TTTTCGTCCATGAAAGTACATAGC 57.583 37.500 0.00 0.00 38.92 2.97
1668 1677 6.961554 GCTTTTTCGTCCATGAAAGTACATAG 59.038 38.462 0.00 0.00 38.92 2.23
1669 1678 6.653320 AGCTTTTTCGTCCATGAAAGTACATA 59.347 34.615 0.00 0.00 38.92 2.29
1691 1700 0.321122 CGGTCAGGAAGAAAGCAGCT 60.321 55.000 0.00 0.00 0.00 4.24
1694 1703 0.884704 GTGCGGTCAGGAAGAAAGCA 60.885 55.000 0.00 0.00 38.19 3.91
1706 1715 1.727335 GAAACTAGCTCAAGTGCGGTC 59.273 52.381 0.00 0.00 38.13 4.79
1709 1718 1.125021 CGTGAAACTAGCTCAAGTGCG 59.875 52.381 0.00 0.00 34.00 5.34
1778 1787 5.763204 GGACAGTCATCAAACTTCCTGTTAA 59.237 40.000 2.17 0.00 38.03 2.01
1783 1792 3.906846 AGAGGACAGTCATCAAACTTCCT 59.093 43.478 17.27 0.00 38.43 3.36
1852 1861 2.019249 CGTCCTCCTCATGTACCGTAA 58.981 52.381 0.00 0.00 0.00 3.18
1889 1898 5.718649 TGCTCTAACAAAGATAATCGCAC 57.281 39.130 0.00 0.00 32.41 5.34
1970 1979 3.872409 CTTTTGGCGCGTCCGTTGG 62.872 63.158 8.89 0.00 37.80 3.77
1971 1980 2.426752 CTTTTGGCGCGTCCGTTG 60.427 61.111 8.89 0.00 37.80 4.10
1972 1981 2.589442 TCTTTTGGCGCGTCCGTT 60.589 55.556 8.89 0.00 37.80 4.44
1973 1982 3.343421 GTCTTTTGGCGCGTCCGT 61.343 61.111 8.89 0.00 37.80 4.69
1974 1983 4.424430 CGTCTTTTGGCGCGTCCG 62.424 66.667 8.89 0.00 41.95 4.79
2079 2090 1.680105 CGTCAAATCTACCGCGCGTT 61.680 55.000 29.95 18.87 0.00 4.84
2136 2147 4.235762 AGTGTGGTGGAGCGCGTT 62.236 61.111 8.43 0.00 0.00 4.84
2250 2263 1.048724 CGGTAGCCTGAAGATCCCCA 61.049 60.000 0.00 0.00 0.00 4.96
2543 2556 4.521062 GCCATGGCTCGCTCGTCT 62.521 66.667 29.98 0.00 38.26 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.