Multiple sequence alignment - TraesCS1D01G268100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G268100 chr1D 100.000 2318 0 0 1 2318 363851776 363854093 0.000000e+00 4281.0
1 TraesCS1D01G268100 chr1D 80.147 136 17 10 7 138 370634460 370634331 2.450000e-15 93.5
2 TraesCS1D01G268100 chr1D 75.333 150 24 9 8 154 22745213 22745074 2.490000e-05 60.2
3 TraesCS1D01G268100 chr1A 86.750 1366 87 40 747 2039 463155211 463156555 0.000000e+00 1434.0
4 TraesCS1D01G268100 chr1A 83.673 343 48 6 1878 2218 49268378 49268714 1.340000e-82 316.0
5 TraesCS1D01G268100 chr1A 100.000 28 0 0 704 731 463155150 463155177 4.000000e-03 52.8
6 TraesCS1D01G268100 chr1B 90.746 1113 46 17 607 1696 487144141 487145219 0.000000e+00 1432.0
7 TraesCS1D01G268100 chr1B 84.000 350 45 9 150 497 662062841 662063181 2.220000e-85 326.0
8 TraesCS1D01G268100 chr1B 83.815 346 46 8 150 493 4303426 4303763 1.030000e-83 320.0
9 TraesCS1D01G268100 chr1B 84.830 323 39 8 1881 2201 398382628 398382942 1.340000e-82 316.0
10 TraesCS1D01G268100 chr1B 84.161 322 45 5 1877 2194 67054932 67055251 8.050000e-80 307.0
11 TraesCS1D01G268100 chr1B 95.455 66 3 0 475 540 487143825 487143890 3.150000e-19 106.0
12 TraesCS1D01G268100 chr3B 84.593 344 43 8 153 494 123573194 123572859 1.330000e-87 333.0
13 TraesCS1D01G268100 chr3B 83.286 353 47 10 153 501 767790535 767790191 4.810000e-82 315.0
14 TraesCS1D01G268100 chr3A 84.848 330 45 4 1882 2210 40175 40500 6.180000e-86 327.0
15 TraesCS1D01G268100 chr3A 84.545 330 46 4 1882 2210 63092 63417 2.870000e-84 322.0
16 TraesCS1D01G268100 chr3A 87.248 149 17 2 7 154 615272883 615272736 3.960000e-38 169.0
17 TraesCS1D01G268100 chr2B 84.046 351 45 9 147 494 497880602 497880944 6.180000e-86 327.0
18 TraesCS1D01G268100 chr2B 84.211 342 44 8 150 489 663883636 663883969 7.990000e-85 324.0
19 TraesCS1D01G268100 chr7B 84.012 344 45 8 153 494 533793540 533793205 2.870000e-84 322.0
20 TraesCS1D01G268100 chr7B 83.784 148 24 0 1 148 245943620 245943767 8.630000e-30 141.0
21 TraesCS1D01G268100 chr6B 83.573 347 46 9 153 497 228980084 228979747 4.810000e-82 315.0
22 TraesCS1D01G268100 chr6B 85.065 154 21 1 1 154 191359553 191359704 3.080000e-34 156.0
23 TraesCS1D01G268100 chr3D 83.526 346 47 8 150 493 608236310 608236647 4.810000e-82 315.0
24 TraesCS1D01G268100 chr3D 83.235 340 51 6 1882 2220 3017076 3016742 8.050000e-80 307.0
25 TraesCS1D01G268100 chr3D 83.533 334 48 6 1874 2203 590698569 590698899 2.890000e-79 305.0
26 TraesCS1D01G268100 chr7A 82.948 346 46 10 1882 2222 136443349 136443012 1.350000e-77 300.0
27 TraesCS1D01G268100 chr7A 82.521 349 51 9 1865 2210 692498282 692498623 4.840000e-77 298.0
28 TraesCS1D01G268100 chr2D 89.855 69 7 0 13 81 175934961 175934893 3.170000e-14 89.8
29 TraesCS1D01G268100 chr2D 80.808 99 18 1 48 146 334726675 334726772 2.470000e-10 76.8
30 TraesCS1D01G268100 chr6A 86.486 74 9 1 16 89 328457696 328457768 1.910000e-11 80.5
31 TraesCS1D01G268100 chr4B 84.932 73 10 1 17 89 23806926 23806855 3.190000e-09 73.1
32 TraesCS1D01G268100 chr5B 83.117 77 13 0 8 84 544927953 544928029 1.150000e-08 71.3
33 TraesCS1D01G268100 chr2A 79.612 103 16 5 45 144 618952838 618952738 4.130000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G268100 chr1D 363851776 363854093 2317 False 4281.0 4281 100.0000 1 2318 1 chr1D.!!$F1 2317
1 TraesCS1D01G268100 chr1A 463155150 463156555 1405 False 743.4 1434 93.3750 704 2039 2 chr1A.!!$F2 1335
2 TraesCS1D01G268100 chr1B 487143825 487145219 1394 False 769.0 1432 93.1005 475 1696 2 chr1B.!!$F5 1221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 432 0.031857 TGTTGTTTGGCCGAGCATTG 59.968 50.0 10.75 0.0 0.0 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2279 2596 0.038526 AAGTAGGTGGAACGACTGCG 60.039 55.0 0.0 0.0 44.79 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.997672 CTGCTCCCCTGTATACTGC 57.002 57.895 4.17 0.52 0.00 4.40
19 20 1.123077 CTGCTCCCCTGTATACTGCA 58.877 55.000 4.17 4.69 0.00 4.41
20 21 1.486310 CTGCTCCCCTGTATACTGCAA 59.514 52.381 4.17 0.00 0.00 4.08
21 22 1.209504 TGCTCCCCTGTATACTGCAAC 59.790 52.381 4.17 0.00 0.00 4.17
22 23 1.475213 GCTCCCCTGTATACTGCAACC 60.475 57.143 4.17 0.00 0.00 3.77
23 24 1.141053 CTCCCCTGTATACTGCAACCC 59.859 57.143 4.17 0.00 0.00 4.11
24 25 0.182775 CCCCTGTATACTGCAACCCC 59.817 60.000 4.17 0.00 0.00 4.95
25 26 0.916086 CCCTGTATACTGCAACCCCA 59.084 55.000 4.17 0.00 0.00 4.96
26 27 1.134098 CCCTGTATACTGCAACCCCAG 60.134 57.143 4.17 0.00 38.78 4.45
27 28 1.559682 CCTGTATACTGCAACCCCAGT 59.440 52.381 4.17 0.23 46.98 4.00
28 29 2.632377 CTGTATACTGCAACCCCAGTG 58.368 52.381 4.17 0.00 45.17 3.66
29 30 1.280710 TGTATACTGCAACCCCAGTGG 59.719 52.381 0.63 0.63 45.17 4.00
39 40 2.992476 CCCCAGTGGTAGTACAGCT 58.008 57.895 8.74 0.00 0.00 4.24
40 41 0.537188 CCCCAGTGGTAGTACAGCTG 59.463 60.000 13.48 13.48 0.00 4.24
41 42 0.537188 CCCAGTGGTAGTACAGCTGG 59.463 60.000 24.31 24.31 44.51 4.85
43 44 2.656560 CAGTGGTAGTACAGCTGGAC 57.343 55.000 22.25 22.25 0.00 4.02
44 45 1.204941 CAGTGGTAGTACAGCTGGACC 59.795 57.143 25.83 21.00 0.00 4.46
45 46 0.172803 GTGGTAGTACAGCTGGACCG 59.827 60.000 25.83 0.00 30.18 4.79
46 47 0.038599 TGGTAGTACAGCTGGACCGA 59.961 55.000 25.83 11.45 30.18 4.69
47 48 0.739561 GGTAGTACAGCTGGACCGAG 59.260 60.000 25.83 0.00 0.00 4.63
48 49 0.100861 GTAGTACAGCTGGACCGAGC 59.899 60.000 25.83 9.53 39.46 5.03
49 50 1.374343 TAGTACAGCTGGACCGAGCG 61.374 60.000 25.83 0.00 44.24 5.03
50 51 3.449227 TACAGCTGGACCGAGCGG 61.449 66.667 19.93 7.48 44.24 5.52
90 91 4.203076 CCGCCTCGGGGTACTTCG 62.203 72.222 1.62 0.00 44.15 3.79
91 92 4.867599 CGCCTCGGGGTACTTCGC 62.868 72.222 1.62 0.00 34.45 4.70
92 93 4.867599 GCCTCGGGGTACTTCGCG 62.868 72.222 1.62 0.00 43.10 5.87
93 94 3.446570 CCTCGGGGTACTTCGCGT 61.447 66.667 5.77 0.00 42.48 6.01
94 95 2.570181 CTCGGGGTACTTCGCGTT 59.430 61.111 5.77 0.00 42.48 4.84
95 96 1.080298 CTCGGGGTACTTCGCGTTT 60.080 57.895 5.77 0.00 42.48 3.60
96 97 1.349259 CTCGGGGTACTTCGCGTTTG 61.349 60.000 5.77 0.00 42.48 2.93
97 98 2.865308 GGGGTACTTCGCGTTTGC 59.135 61.111 5.77 0.00 37.91 3.68
98 99 1.962306 GGGGTACTTCGCGTTTGCA 60.962 57.895 5.77 0.00 42.97 4.08
99 100 1.205820 GGGTACTTCGCGTTTGCAC 59.794 57.895 5.77 0.00 42.97 4.57
100 101 1.226030 GGGTACTTCGCGTTTGCACT 61.226 55.000 5.77 0.00 42.97 4.40
101 102 1.421382 GGTACTTCGCGTTTGCACTA 58.579 50.000 5.77 0.00 42.97 2.74
102 103 1.997606 GGTACTTCGCGTTTGCACTAT 59.002 47.619 5.77 0.00 42.97 2.12
103 104 3.181397 GGTACTTCGCGTTTGCACTATA 58.819 45.455 5.77 0.00 42.97 1.31
104 105 3.000376 GGTACTTCGCGTTTGCACTATAC 60.000 47.826 5.77 0.00 42.97 1.47
105 106 2.955614 ACTTCGCGTTTGCACTATACT 58.044 42.857 5.77 0.00 42.97 2.12
106 107 2.921754 ACTTCGCGTTTGCACTATACTC 59.078 45.455 5.77 0.00 42.97 2.59
107 108 2.640346 TCGCGTTTGCACTATACTCA 57.360 45.000 5.77 0.00 42.97 3.41
108 109 2.526077 TCGCGTTTGCACTATACTCAG 58.474 47.619 5.77 0.00 42.97 3.35
109 110 1.588404 CGCGTTTGCACTATACTCAGG 59.412 52.381 0.00 0.00 42.97 3.86
110 111 1.933853 GCGTTTGCACTATACTCAGGG 59.066 52.381 0.00 0.00 42.15 4.45
111 112 2.418197 GCGTTTGCACTATACTCAGGGA 60.418 50.000 0.00 0.00 42.15 4.20
112 113 3.741388 GCGTTTGCACTATACTCAGGGAT 60.741 47.826 0.00 0.00 42.15 3.85
113 114 4.051922 CGTTTGCACTATACTCAGGGATC 58.948 47.826 0.00 0.00 0.00 3.36
114 115 4.202161 CGTTTGCACTATACTCAGGGATCT 60.202 45.833 0.00 0.00 0.00 2.75
115 116 5.675538 GTTTGCACTATACTCAGGGATCTT 58.324 41.667 0.00 0.00 0.00 2.40
116 117 5.957771 TTGCACTATACTCAGGGATCTTT 57.042 39.130 0.00 0.00 0.00 2.52
117 118 5.537300 TGCACTATACTCAGGGATCTTTC 57.463 43.478 0.00 0.00 0.00 2.62
118 119 4.962362 TGCACTATACTCAGGGATCTTTCA 59.038 41.667 0.00 0.00 0.00 2.69
119 120 5.163405 TGCACTATACTCAGGGATCTTTCAC 60.163 44.000 0.00 0.00 0.00 3.18
120 121 5.740513 GCACTATACTCAGGGATCTTTCACC 60.741 48.000 0.00 0.00 0.00 4.02
121 122 4.902448 ACTATACTCAGGGATCTTTCACCC 59.098 45.833 0.00 0.00 45.88 4.61
125 126 4.542075 GGGATCTTTCACCCGAGC 57.458 61.111 0.00 0.00 36.56 5.03
126 127 1.521681 GGGATCTTTCACCCGAGCG 60.522 63.158 0.00 0.00 36.56 5.03
127 128 1.521681 GGATCTTTCACCCGAGCGG 60.522 63.158 1.06 1.06 37.81 5.52
129 130 0.458669 GATCTTTCACCCGAGCGGTA 59.541 55.000 8.25 0.00 46.14 4.02
130 131 0.460311 ATCTTTCACCCGAGCGGTAG 59.540 55.000 8.25 0.00 46.14 3.18
131 132 0.896940 TCTTTCACCCGAGCGGTAGT 60.897 55.000 8.25 0.00 46.14 2.73
132 133 0.813184 CTTTCACCCGAGCGGTAGTA 59.187 55.000 8.25 0.00 46.14 1.82
133 134 0.527565 TTTCACCCGAGCGGTAGTAC 59.472 55.000 8.25 0.00 46.14 2.73
134 135 1.315257 TTCACCCGAGCGGTAGTACC 61.315 60.000 9.50 9.50 46.14 3.34
144 145 2.452767 GGTAGTACCGCTTGTGTGC 58.547 57.895 2.90 0.00 0.00 4.57
152 153 2.546321 GCTTGTGTGCGTCGAGTG 59.454 61.111 0.00 0.00 0.00 3.51
153 154 2.546321 CTTGTGTGCGTCGAGTGC 59.454 61.111 0.00 2.68 0.00 4.40
154 155 3.268446 CTTGTGTGCGTCGAGTGCG 62.268 63.158 0.00 0.00 39.35 5.34
162 163 4.203076 GTCGAGTGCGCCGGGTAT 62.203 66.667 4.18 0.00 37.46 2.73
163 164 3.454573 TCGAGTGCGCCGGGTATT 61.455 61.111 4.18 0.00 37.46 1.89
164 165 2.960129 CGAGTGCGCCGGGTATTC 60.960 66.667 4.18 0.00 0.00 1.75
165 166 2.588034 GAGTGCGCCGGGTATTCC 60.588 66.667 4.18 0.00 0.00 3.01
176 177 1.530283 GGTATTCCCCTTCCCCACG 59.470 63.158 0.00 0.00 0.00 4.94
177 178 1.153025 GTATTCCCCTTCCCCACGC 60.153 63.158 0.00 0.00 0.00 5.34
178 179 2.380285 TATTCCCCTTCCCCACGCC 61.380 63.158 0.00 0.00 0.00 5.68
184 185 4.410400 CTTCCCCACGCCCTCCAC 62.410 72.222 0.00 0.00 0.00 4.02
188 189 4.446413 CCCACGCCCTCCACGTAC 62.446 72.222 0.00 0.00 42.96 3.67
189 190 4.446413 CCACGCCCTCCACGTACC 62.446 72.222 0.00 0.00 42.96 3.34
190 191 4.789075 CACGCCCTCCACGTACCG 62.789 72.222 0.00 0.00 42.96 4.02
220 221 2.682494 GGACCAGTCCGGGTAGCA 60.682 66.667 0.00 0.00 42.53 3.49
221 222 2.722201 GGACCAGTCCGGGTAGCAG 61.722 68.421 0.00 0.00 42.53 4.24
222 223 3.372554 GACCAGTCCGGGTAGCAGC 62.373 68.421 0.00 0.00 42.53 5.25
223 224 4.514577 CCAGTCCGGGTAGCAGCG 62.515 72.222 0.00 0.00 0.00 5.18
224 225 3.760035 CAGTCCGGGTAGCAGCGT 61.760 66.667 0.00 0.00 0.00 5.07
225 226 3.450115 AGTCCGGGTAGCAGCGTC 61.450 66.667 0.00 0.00 0.00 5.19
226 227 4.849329 GTCCGGGTAGCAGCGTCG 62.849 72.222 0.00 0.00 0.00 5.12
228 229 4.849329 CCGGGTAGCAGCGTCGTC 62.849 72.222 0.00 0.00 0.00 4.20
229 230 4.111016 CGGGTAGCAGCGTCGTCA 62.111 66.667 0.00 0.00 0.00 4.35
230 231 2.494918 GGGTAGCAGCGTCGTCAT 59.505 61.111 0.00 0.00 0.00 3.06
231 232 1.589196 GGGTAGCAGCGTCGTCATC 60.589 63.158 0.00 0.00 0.00 2.92
232 233 1.939785 GGTAGCAGCGTCGTCATCG 60.940 63.158 0.00 0.00 38.55 3.84
233 234 1.226323 GTAGCAGCGTCGTCATCGT 60.226 57.895 0.00 0.00 38.33 3.73
234 235 1.062047 TAGCAGCGTCGTCATCGTC 59.938 57.895 0.00 0.00 38.33 4.20
235 236 2.627201 TAGCAGCGTCGTCATCGTCG 62.627 60.000 0.00 3.42 46.99 5.12
239 240 2.868331 CGTCGTCATCGTCGCGTT 60.868 61.111 5.77 0.00 40.72 4.84
240 241 2.681666 GTCGTCATCGTCGCGTTG 59.318 61.111 5.77 0.00 38.33 4.10
241 242 3.169924 TCGTCATCGTCGCGTTGC 61.170 61.111 5.77 0.00 38.33 4.17
242 243 3.172575 CGTCATCGTCGCGTTGCT 61.173 61.111 5.77 0.00 0.00 3.91
243 244 2.716828 CGTCATCGTCGCGTTGCTT 61.717 57.895 5.77 0.00 0.00 3.91
244 245 1.057361 GTCATCGTCGCGTTGCTTC 59.943 57.895 5.77 0.00 0.00 3.86
245 246 1.080772 TCATCGTCGCGTTGCTTCT 60.081 52.632 5.77 0.00 0.00 2.85
246 247 1.071019 TCATCGTCGCGTTGCTTCTC 61.071 55.000 5.77 0.00 0.00 2.87
247 248 2.152699 ATCGTCGCGTTGCTTCTCG 61.153 57.895 5.77 0.10 0.00 4.04
256 257 4.047834 TGCTTCTCGCAGGTGTTG 57.952 55.556 0.00 0.00 45.47 3.33
257 258 2.253758 TGCTTCTCGCAGGTGTTGC 61.254 57.895 0.00 0.00 45.47 4.17
267 268 0.168788 CAGGTGTTGCTTGGTATGCG 59.831 55.000 0.00 0.00 0.00 4.73
268 269 0.960364 AGGTGTTGCTTGGTATGCGG 60.960 55.000 0.00 0.00 0.00 5.69
269 270 1.154035 GTGTTGCTTGGTATGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
270 271 1.303236 TGTTGCTTGGTATGCGGCT 60.303 52.632 0.00 0.00 0.00 5.52
271 272 1.305219 TGTTGCTTGGTATGCGGCTC 61.305 55.000 0.00 0.00 0.00 4.70
272 273 1.026718 GTTGCTTGGTATGCGGCTCT 61.027 55.000 0.00 0.00 0.00 4.09
273 274 0.744414 TTGCTTGGTATGCGGCTCTC 60.744 55.000 0.00 0.00 0.00 3.20
274 275 1.889573 GCTTGGTATGCGGCTCTCC 60.890 63.158 0.00 1.32 0.00 3.71
285 286 1.439644 GGCTCTCCGAAGTGCTAGG 59.560 63.158 0.00 0.00 40.91 3.02
286 287 1.038130 GGCTCTCCGAAGTGCTAGGA 61.038 60.000 0.00 0.00 40.91 2.94
290 291 1.178276 CTCCGAAGTGCTAGGAGTGT 58.822 55.000 12.53 0.00 44.79 3.55
291 292 0.888619 TCCGAAGTGCTAGGAGTGTG 59.111 55.000 0.00 0.00 0.00 3.82
292 293 0.108615 CCGAAGTGCTAGGAGTGTGG 60.109 60.000 0.00 0.00 0.00 4.17
293 294 0.603569 CGAAGTGCTAGGAGTGTGGT 59.396 55.000 0.00 0.00 0.00 4.16
294 295 1.670087 CGAAGTGCTAGGAGTGTGGTG 60.670 57.143 0.00 0.00 0.00 4.17
295 296 0.035458 AAGTGCTAGGAGTGTGGTGC 59.965 55.000 0.00 0.00 0.00 5.01
296 297 1.121407 AGTGCTAGGAGTGTGGTGCA 61.121 55.000 0.00 0.00 0.00 4.57
297 298 0.250295 GTGCTAGGAGTGTGGTGCAA 60.250 55.000 0.00 0.00 32.10 4.08
298 299 0.472044 TGCTAGGAGTGTGGTGCAAA 59.528 50.000 0.00 0.00 0.00 3.68
299 300 1.073763 TGCTAGGAGTGTGGTGCAAAT 59.926 47.619 0.00 0.00 0.00 2.32
300 301 2.162681 GCTAGGAGTGTGGTGCAAATT 58.837 47.619 0.00 0.00 0.00 1.82
301 302 2.162408 GCTAGGAGTGTGGTGCAAATTC 59.838 50.000 0.00 0.00 0.00 2.17
302 303 2.664402 AGGAGTGTGGTGCAAATTCT 57.336 45.000 0.00 0.00 0.00 2.40
303 304 2.949447 AGGAGTGTGGTGCAAATTCTT 58.051 42.857 0.00 0.00 0.00 2.52
304 305 2.887152 AGGAGTGTGGTGCAAATTCTTC 59.113 45.455 0.00 0.00 0.00 2.87
305 306 2.350772 GGAGTGTGGTGCAAATTCTTCG 60.351 50.000 0.00 0.00 0.00 3.79
306 307 1.608590 AGTGTGGTGCAAATTCTTCGG 59.391 47.619 0.00 0.00 0.00 4.30
307 308 1.606668 GTGTGGTGCAAATTCTTCGGA 59.393 47.619 0.00 0.00 0.00 4.55
308 309 1.879380 TGTGGTGCAAATTCTTCGGAG 59.121 47.619 0.00 0.00 0.00 4.63
309 310 1.200020 GTGGTGCAAATTCTTCGGAGG 59.800 52.381 0.00 0.00 0.00 4.30
310 311 1.073125 TGGTGCAAATTCTTCGGAGGA 59.927 47.619 0.00 0.00 0.00 3.71
311 312 1.468914 GGTGCAAATTCTTCGGAGGAC 59.531 52.381 0.00 0.00 0.00 3.85
312 313 1.128692 GTGCAAATTCTTCGGAGGACG 59.871 52.381 0.00 0.00 46.11 4.79
313 314 0.097150 GCAAATTCTTCGGAGGACGC 59.903 55.000 0.00 0.00 43.86 5.19
314 315 1.438651 CAAATTCTTCGGAGGACGCA 58.561 50.000 0.00 0.00 43.86 5.24
315 316 1.394917 CAAATTCTTCGGAGGACGCAG 59.605 52.381 0.00 0.00 43.86 5.18
316 317 0.741221 AATTCTTCGGAGGACGCAGC 60.741 55.000 0.00 0.00 43.86 5.25
317 318 2.890847 ATTCTTCGGAGGACGCAGCG 62.891 60.000 14.82 14.82 43.86 5.18
332 333 2.824041 GCGGTTGCGGGTCATCAT 60.824 61.111 0.00 0.00 0.00 2.45
333 334 2.406616 GCGGTTGCGGGTCATCATT 61.407 57.895 0.00 0.00 0.00 2.57
334 335 1.429021 CGGTTGCGGGTCATCATTG 59.571 57.895 0.00 0.00 0.00 2.82
335 336 1.305219 CGGTTGCGGGTCATCATTGT 61.305 55.000 0.00 0.00 0.00 2.71
336 337 0.887933 GGTTGCGGGTCATCATTGTT 59.112 50.000 0.00 0.00 0.00 2.83
337 338 1.272212 GGTTGCGGGTCATCATTGTTT 59.728 47.619 0.00 0.00 0.00 2.83
338 339 2.288763 GGTTGCGGGTCATCATTGTTTT 60.289 45.455 0.00 0.00 0.00 2.43
339 340 2.986479 GTTGCGGGTCATCATTGTTTTC 59.014 45.455 0.00 0.00 0.00 2.29
340 341 1.198867 TGCGGGTCATCATTGTTTTCG 59.801 47.619 0.00 0.00 0.00 3.46
341 342 1.199097 GCGGGTCATCATTGTTTTCGT 59.801 47.619 0.00 0.00 0.00 3.85
342 343 2.727916 GCGGGTCATCATTGTTTTCGTC 60.728 50.000 0.00 0.00 0.00 4.20
343 344 2.473868 CGGGTCATCATTGTTTTCGTCG 60.474 50.000 0.00 0.00 0.00 5.12
344 345 2.739913 GGGTCATCATTGTTTTCGTCGA 59.260 45.455 0.00 0.00 0.00 4.20
345 346 3.374058 GGGTCATCATTGTTTTCGTCGAT 59.626 43.478 0.00 0.00 0.00 3.59
346 347 4.494199 GGGTCATCATTGTTTTCGTCGATC 60.494 45.833 0.00 0.00 0.00 3.69
347 348 4.494199 GGTCATCATTGTTTTCGTCGATCC 60.494 45.833 0.00 0.00 0.00 3.36
348 349 3.305897 TCATCATTGTTTTCGTCGATCCG 59.694 43.478 0.00 0.00 0.00 4.18
349 350 2.949142 TCATTGTTTTCGTCGATCCGA 58.051 42.857 0.00 0.00 34.52 4.55
360 361 1.530323 TCGATCCGACTCAGTTGACA 58.470 50.000 0.00 0.00 0.00 3.58
361 362 2.092323 TCGATCCGACTCAGTTGACAT 58.908 47.619 0.00 0.00 0.00 3.06
362 363 2.492088 TCGATCCGACTCAGTTGACATT 59.508 45.455 0.00 0.00 0.00 2.71
363 364 3.692593 TCGATCCGACTCAGTTGACATTA 59.307 43.478 0.00 0.00 0.00 1.90
364 365 4.038361 CGATCCGACTCAGTTGACATTAG 58.962 47.826 0.00 0.00 0.00 1.73
365 366 4.438880 CGATCCGACTCAGTTGACATTAGT 60.439 45.833 0.00 0.00 0.00 2.24
366 367 4.866508 TCCGACTCAGTTGACATTAGTT 57.133 40.909 0.00 0.00 0.00 2.24
367 368 5.209818 TCCGACTCAGTTGACATTAGTTT 57.790 39.130 0.00 0.00 0.00 2.66
368 369 5.227908 TCCGACTCAGTTGACATTAGTTTC 58.772 41.667 0.00 0.00 0.00 2.78
369 370 5.010719 TCCGACTCAGTTGACATTAGTTTCT 59.989 40.000 0.00 0.00 0.00 2.52
370 371 5.696724 CCGACTCAGTTGACATTAGTTTCTT 59.303 40.000 0.00 0.00 0.00 2.52
371 372 6.202954 CCGACTCAGTTGACATTAGTTTCTTT 59.797 38.462 0.00 0.00 0.00 2.52
372 373 7.254795 CCGACTCAGTTGACATTAGTTTCTTTT 60.255 37.037 0.00 0.00 0.00 2.27
373 374 8.122952 CGACTCAGTTGACATTAGTTTCTTTTT 58.877 33.333 0.00 0.00 0.00 1.94
400 401 9.974980 TCTTTATCTTTTATTTCTTTTTGGCGT 57.025 25.926 0.00 0.00 0.00 5.68
402 403 5.898630 TCTTTTATTTCTTTTTGGCGTGC 57.101 34.783 0.00 0.00 0.00 5.34
403 404 5.596845 TCTTTTATTTCTTTTTGGCGTGCT 58.403 33.333 0.00 0.00 0.00 4.40
404 405 5.461737 TCTTTTATTTCTTTTTGGCGTGCTG 59.538 36.000 0.00 0.00 0.00 4.41
405 406 2.153366 ATTTCTTTTTGGCGTGCTGG 57.847 45.000 0.00 0.00 0.00 4.85
406 407 0.820871 TTTCTTTTTGGCGTGCTGGT 59.179 45.000 0.00 0.00 0.00 4.00
407 408 0.102120 TTCTTTTTGGCGTGCTGGTG 59.898 50.000 0.00 0.00 0.00 4.17
408 409 1.950630 CTTTTTGGCGTGCTGGTGC 60.951 57.895 0.00 0.00 40.20 5.01
409 410 2.354074 CTTTTTGGCGTGCTGGTGCT 62.354 55.000 0.00 0.00 40.48 4.40
410 411 1.954362 TTTTTGGCGTGCTGGTGCTT 61.954 50.000 0.00 0.00 40.48 3.91
411 412 2.625973 TTTTGGCGTGCTGGTGCTTG 62.626 55.000 0.00 0.00 40.48 4.01
412 413 4.873810 TGGCGTGCTGGTGCTTGT 62.874 61.111 0.00 0.00 40.48 3.16
413 414 4.332637 GGCGTGCTGGTGCTTGTG 62.333 66.667 0.00 0.00 40.48 3.33
414 415 3.585990 GCGTGCTGGTGCTTGTGT 61.586 61.111 0.00 0.00 40.48 3.72
415 416 3.110139 CGTGCTGGTGCTTGTGTT 58.890 55.556 0.00 0.00 40.48 3.32
416 417 1.298563 CGTGCTGGTGCTTGTGTTG 60.299 57.895 0.00 0.00 40.48 3.33
417 418 1.809207 GTGCTGGTGCTTGTGTTGT 59.191 52.632 0.00 0.00 40.48 3.32
418 419 0.173255 GTGCTGGTGCTTGTGTTGTT 59.827 50.000 0.00 0.00 40.48 2.83
419 420 0.894141 TGCTGGTGCTTGTGTTGTTT 59.106 45.000 0.00 0.00 40.48 2.83
420 421 1.280066 GCTGGTGCTTGTGTTGTTTG 58.720 50.000 0.00 0.00 36.03 2.93
421 422 1.925229 CTGGTGCTTGTGTTGTTTGG 58.075 50.000 0.00 0.00 0.00 3.28
422 423 0.108424 TGGTGCTTGTGTTGTTTGGC 60.108 50.000 0.00 0.00 0.00 4.52
423 424 0.809636 GGTGCTTGTGTTGTTTGGCC 60.810 55.000 0.00 0.00 0.00 5.36
424 425 1.140589 TGCTTGTGTTGTTTGGCCG 59.859 52.632 0.00 0.00 0.00 6.13
425 426 1.315981 TGCTTGTGTTGTTTGGCCGA 61.316 50.000 0.00 0.00 0.00 5.54
426 427 0.594796 GCTTGTGTTGTTTGGCCGAG 60.595 55.000 0.00 0.00 0.00 4.63
427 428 0.594796 CTTGTGTTGTTTGGCCGAGC 60.595 55.000 0.00 0.00 0.00 5.03
428 429 1.315981 TTGTGTTGTTTGGCCGAGCA 61.316 50.000 5.22 5.22 0.00 4.26
429 430 1.106351 TGTGTTGTTTGGCCGAGCAT 61.106 50.000 10.75 0.00 0.00 3.79
430 431 0.031994 GTGTTGTTTGGCCGAGCATT 59.968 50.000 10.75 0.00 0.00 3.56
431 432 0.031857 TGTTGTTTGGCCGAGCATTG 59.968 50.000 10.75 0.00 0.00 2.82
432 433 0.313672 GTTGTTTGGCCGAGCATTGA 59.686 50.000 10.75 0.00 0.00 2.57
433 434 1.035923 TTGTTTGGCCGAGCATTGAA 58.964 45.000 10.75 0.00 0.00 2.69
434 435 0.313672 TGTTTGGCCGAGCATTGAAC 59.686 50.000 5.22 0.00 0.00 3.18
435 436 0.598065 GTTTGGCCGAGCATTGAACT 59.402 50.000 1.13 0.00 0.00 3.01
436 437 0.881118 TTTGGCCGAGCATTGAACTC 59.119 50.000 0.00 0.00 0.00 3.01
437 438 0.250684 TTGGCCGAGCATTGAACTCA 60.251 50.000 0.00 0.00 33.58 3.41
438 439 0.955428 TGGCCGAGCATTGAACTCAC 60.955 55.000 0.00 0.00 33.58 3.51
439 440 0.955428 GGCCGAGCATTGAACTCACA 60.955 55.000 0.00 0.00 33.58 3.58
440 441 1.089920 GCCGAGCATTGAACTCACAT 58.910 50.000 0.00 0.00 33.58 3.21
441 442 1.470098 GCCGAGCATTGAACTCACATT 59.530 47.619 0.00 0.00 33.58 2.71
442 443 2.095059 GCCGAGCATTGAACTCACATTT 60.095 45.455 0.00 0.00 33.58 2.32
443 444 3.612479 GCCGAGCATTGAACTCACATTTT 60.612 43.478 0.00 0.00 33.58 1.82
444 445 4.549458 CCGAGCATTGAACTCACATTTTT 58.451 39.130 0.00 0.00 33.58 1.94
445 446 5.698832 CCGAGCATTGAACTCACATTTTTA 58.301 37.500 0.00 0.00 33.58 1.52
446 447 6.324819 CCGAGCATTGAACTCACATTTTTAT 58.675 36.000 0.00 0.00 33.58 1.40
447 448 6.470235 CCGAGCATTGAACTCACATTTTTATC 59.530 38.462 0.00 0.00 33.58 1.75
448 449 7.022979 CGAGCATTGAACTCACATTTTTATCA 58.977 34.615 0.00 0.00 33.58 2.15
449 450 7.217636 CGAGCATTGAACTCACATTTTTATCAG 59.782 37.037 0.00 0.00 33.58 2.90
450 451 7.889469 AGCATTGAACTCACATTTTTATCAGT 58.111 30.769 0.00 0.00 0.00 3.41
451 452 8.362639 AGCATTGAACTCACATTTTTATCAGTT 58.637 29.630 0.00 0.00 0.00 3.16
452 453 8.430063 GCATTGAACTCACATTTTTATCAGTTG 58.570 33.333 0.00 0.00 0.00 3.16
453 454 8.918658 CATTGAACTCACATTTTTATCAGTTGG 58.081 33.333 0.00 0.00 0.00 3.77
454 455 7.581213 TGAACTCACATTTTTATCAGTTGGT 57.419 32.000 0.00 0.00 0.00 3.67
455 456 8.006298 TGAACTCACATTTTTATCAGTTGGTT 57.994 30.769 0.00 0.00 0.00 3.67
456 457 8.134895 TGAACTCACATTTTTATCAGTTGGTTC 58.865 33.333 0.00 0.00 0.00 3.62
457 458 6.981722 ACTCACATTTTTATCAGTTGGTTCC 58.018 36.000 0.00 0.00 0.00 3.62
458 459 6.777580 ACTCACATTTTTATCAGTTGGTTCCT 59.222 34.615 0.00 0.00 0.00 3.36
459 460 7.942341 ACTCACATTTTTATCAGTTGGTTCCTA 59.058 33.333 0.00 0.00 0.00 2.94
460 461 8.877864 TCACATTTTTATCAGTTGGTTCCTAT 57.122 30.769 0.00 0.00 0.00 2.57
461 462 9.967451 TCACATTTTTATCAGTTGGTTCCTATA 57.033 29.630 0.00 0.00 0.00 1.31
511 512 4.095632 TCGAGAGAGCTAACAGTTCTGATG 59.904 45.833 6.83 0.00 35.86 3.07
512 513 4.095632 CGAGAGAGCTAACAGTTCTGATGA 59.904 45.833 6.83 0.00 35.86 2.92
516 517 6.324512 AGAGAGCTAACAGTTCTGATGATCAT 59.675 38.462 8.25 8.25 35.86 2.45
544 762 3.453353 GGGAGTAGTAATTGCACCTACCA 59.547 47.826 8.32 0.00 33.18 3.25
553 771 0.613260 TGCACCTACCACATCTCCAC 59.387 55.000 0.00 0.00 0.00 4.02
559 777 5.360591 CACCTACCACATCTCCACTTAATC 58.639 45.833 0.00 0.00 0.00 1.75
569 787 7.986320 CACATCTCCACTTAATCATCTTCTCTT 59.014 37.037 0.00 0.00 0.00 2.85
583 801 9.767228 ATCATCTTCTCTTTATTGATGACTCTG 57.233 33.333 6.18 0.00 43.82 3.35
584 802 8.756927 TCATCTTCTCTTTATTGATGACTCTGT 58.243 33.333 0.00 0.00 38.67 3.41
585 803 9.381033 CATCTTCTCTTTATTGATGACTCTGTT 57.619 33.333 0.00 0.00 37.33 3.16
596 814 7.439157 TTGATGACTCTGTTAATGTTCAAGG 57.561 36.000 0.00 0.00 0.00 3.61
597 815 5.412594 TGATGACTCTGTTAATGTTCAAGGC 59.587 40.000 0.00 0.00 0.00 4.35
598 816 3.745975 TGACTCTGTTAATGTTCAAGGCG 59.254 43.478 0.00 0.00 0.00 5.52
599 817 3.994392 GACTCTGTTAATGTTCAAGGCGA 59.006 43.478 0.00 0.00 0.00 5.54
600 818 4.385825 ACTCTGTTAATGTTCAAGGCGAA 58.614 39.130 0.00 0.00 0.00 4.70
601 819 4.452455 ACTCTGTTAATGTTCAAGGCGAAG 59.548 41.667 0.00 0.00 33.09 3.79
602 820 3.751175 TCTGTTAATGTTCAAGGCGAAGG 59.249 43.478 0.00 0.00 33.09 3.46
603 821 3.745799 TGTTAATGTTCAAGGCGAAGGA 58.254 40.909 0.00 0.00 33.09 3.36
604 822 4.138290 TGTTAATGTTCAAGGCGAAGGAA 58.862 39.130 0.00 0.00 33.09 3.36
605 823 4.215399 TGTTAATGTTCAAGGCGAAGGAAG 59.785 41.667 0.00 0.00 33.09 3.46
625 843 4.689612 AGGAGGAGCTATTAAAATGCGA 57.310 40.909 0.00 0.00 0.00 5.10
628 846 5.057149 GGAGGAGCTATTAAAATGCGAGAA 58.943 41.667 0.00 0.00 0.00 2.87
632 850 6.767902 AGGAGCTATTAAAATGCGAGAAATCA 59.232 34.615 0.00 0.00 0.00 2.57
652 870 9.766277 GAAATCATTCAGAGTTCTTGTGATAAC 57.234 33.333 0.00 0.00 45.35 1.89
656 874 3.987868 TCAGAGTTCTTGTGATAACGTGC 59.012 43.478 0.00 0.00 0.00 5.34
666 884 2.806244 GTGATAACGTGCAGTGAACCTT 59.194 45.455 0.00 0.00 0.00 3.50
680 898 6.491394 CAGTGAACCTTTCAAAATCGTGTAA 58.509 36.000 0.00 0.00 42.15 2.41
681 899 6.632834 CAGTGAACCTTTCAAAATCGTGTAAG 59.367 38.462 0.00 0.00 42.15 2.34
682 900 6.317893 AGTGAACCTTTCAAAATCGTGTAAGT 59.682 34.615 0.00 0.00 42.15 2.24
683 901 7.496591 AGTGAACCTTTCAAAATCGTGTAAGTA 59.503 33.333 0.00 0.00 42.15 2.24
684 902 8.287503 GTGAACCTTTCAAAATCGTGTAAGTAT 58.712 33.333 0.00 0.00 42.15 2.12
685 903 8.842280 TGAACCTTTCAAAATCGTGTAAGTATT 58.158 29.630 0.00 0.00 36.59 1.89
686 904 9.673454 GAACCTTTCAAAATCGTGTAAGTATTT 57.327 29.630 0.00 0.00 0.00 1.40
687 905 9.673454 AACCTTTCAAAATCGTGTAAGTATTTC 57.327 29.630 0.00 0.00 0.00 2.17
731 949 4.018506 TGAATGGAGGGTGCTAATCAAAGA 60.019 41.667 0.00 0.00 0.00 2.52
733 951 3.181329 TGGAGGGTGCTAATCAAAGAGA 58.819 45.455 0.00 0.00 0.00 3.10
736 954 4.819088 GGAGGGTGCTAATCAAAGAGATTC 59.181 45.833 0.00 0.00 43.42 2.52
737 955 5.397334 GGAGGGTGCTAATCAAAGAGATTCT 60.397 44.000 0.00 0.00 43.42 2.40
738 956 5.435291 AGGGTGCTAATCAAAGAGATTCTG 58.565 41.667 0.00 0.00 43.42 3.02
740 958 5.882557 GGGTGCTAATCAAAGAGATTCTGAA 59.117 40.000 0.00 0.00 43.42 3.02
741 959 6.545298 GGGTGCTAATCAAAGAGATTCTGAAT 59.455 38.462 1.81 1.81 43.42 2.57
742 960 7.416022 GGTGCTAATCAAAGAGATTCTGAATG 58.584 38.462 7.78 0.00 43.42 2.67
743 961 7.066766 GGTGCTAATCAAAGAGATTCTGAATGT 59.933 37.037 7.78 3.28 43.42 2.71
812 1048 2.669391 GCAATTTGCTACAGTGCTGGAC 60.669 50.000 14.11 0.00 40.96 4.02
907 1158 1.126846 CCAAGCGCTTTGTAGAAGACG 59.873 52.381 22.51 4.77 34.87 4.18
933 1184 1.315257 AAACCATCACATGCCGAGCC 61.315 55.000 0.00 0.00 0.00 4.70
934 1185 3.274586 CCATCACATGCCGAGCCG 61.275 66.667 0.00 0.00 0.00 5.52
953 1204 0.397941 GATCCATCATTCCCTCGGCA 59.602 55.000 0.00 0.00 0.00 5.69
954 1205 0.109342 ATCCATCATTCCCTCGGCAC 59.891 55.000 0.00 0.00 0.00 5.01
984 1235 3.041211 ACTCCATTCAGATCGATCCCAA 58.959 45.455 21.66 14.51 0.00 4.12
1328 1585 1.432270 CGTGCCTAAGCTTAGCTGCC 61.432 60.000 25.38 16.39 39.62 4.85
1430 1705 4.357918 AGCTGTGGTACTCTTTGAATGT 57.642 40.909 0.00 0.00 0.00 2.71
1487 1763 6.349611 GCATGGTTCTATCATGTGAGTTGTTT 60.350 38.462 0.00 0.00 42.72 2.83
1534 1810 0.580104 GTGGGTCAGTTTGTCGTTCG 59.420 55.000 0.00 0.00 0.00 3.95
1598 1876 4.184629 GGGTGCAGTTAACTGATCTGTAG 58.815 47.826 34.43 10.02 46.59 2.74
1599 1877 4.322801 GGGTGCAGTTAACTGATCTGTAGT 60.323 45.833 34.43 0.00 46.59 2.73
1600 1878 5.238583 GGTGCAGTTAACTGATCTGTAGTT 58.761 41.667 34.43 4.04 46.59 2.24
1601 1879 5.348997 GGTGCAGTTAACTGATCTGTAGTTC 59.651 44.000 34.43 15.57 46.59 3.01
1602 1880 6.159988 GTGCAGTTAACTGATCTGTAGTTCT 58.840 40.000 34.43 0.00 46.59 3.01
1603 1881 6.090088 GTGCAGTTAACTGATCTGTAGTTCTG 59.910 42.308 34.43 8.36 46.59 3.02
1604 1882 6.159988 GCAGTTAACTGATCTGTAGTTCTGT 58.840 40.000 34.43 0.00 46.59 3.41
1605 1883 7.039993 TGCAGTTAACTGATCTGTAGTTCTGTA 60.040 37.037 34.43 4.32 46.59 2.74
1689 1967 8.920665 GTCATTCTGTATGCTTATGAGTATCAC 58.079 37.037 0.00 0.00 40.42 3.06
1716 1995 4.929146 AAACTATACACTTCTTGCCCCT 57.071 40.909 0.00 0.00 0.00 4.79
1720 1999 5.278061 ACTATACACTTCTTGCCCCTCTTA 58.722 41.667 0.00 0.00 0.00 2.10
1736 2015 4.566488 CCCTCTTAGGTGAGACAGCAAAAT 60.566 45.833 0.00 0.00 36.23 1.82
1784 2063 7.926020 TGAGCATCATCCTATATACATCCAT 57.074 36.000 0.00 0.00 42.56 3.41
1788 2067 9.840690 AGCATCATCCTATATACATCCATATCT 57.159 33.333 0.00 0.00 0.00 1.98
1792 2071 9.593565 TCATCCTATATACATCCATATCTCACC 57.406 37.037 0.00 0.00 0.00 4.02
1793 2072 9.372189 CATCCTATATACATCCATATCTCACCA 57.628 37.037 0.00 0.00 0.00 4.17
1794 2073 9.958125 ATCCTATATACATCCATATCTCACCAA 57.042 33.333 0.00 0.00 0.00 3.67
1801 2111 9.872684 ATACATCCATATCTCACCAAAAGAAAT 57.127 29.630 0.00 0.00 0.00 2.17
1803 2113 9.039165 ACATCCATATCTCACCAAAAGAAATTT 57.961 29.630 0.00 0.00 0.00 1.82
1813 2123 9.573133 CTCACCAAAAGAAATTTATACCATGAC 57.427 33.333 0.00 0.00 0.00 3.06
1818 2128 9.236691 CAAAAGAAATTTATACCATGACCATCG 57.763 33.333 0.00 0.00 0.00 3.84
1824 2134 8.603242 AATTTATACCATGACCATCGTTCTAC 57.397 34.615 0.00 0.00 0.00 2.59
1829 2139 4.404394 ACCATGACCATCGTTCTACATACA 59.596 41.667 0.00 0.00 0.00 2.29
1858 2168 1.755380 CTCTACCAGTCCCCTAAACCG 59.245 57.143 0.00 0.00 0.00 4.44
1859 2169 0.177373 CTACCAGTCCCCTAAACCGC 59.823 60.000 0.00 0.00 0.00 5.68
1922 2232 9.832445 GTCATTCCCACTAACTTATTTATCTCA 57.168 33.333 0.00 0.00 0.00 3.27
1927 2237 9.613428 TCCCACTAACTTATTTATCTCAACATG 57.387 33.333 0.00 0.00 0.00 3.21
1944 2254 7.654923 TCTCAACATGCAAGTATATCACATCTC 59.345 37.037 0.00 0.00 0.00 2.75
1946 2256 5.233225 ACATGCAAGTATATCACATCTCCG 58.767 41.667 0.00 0.00 0.00 4.63
1949 2259 5.769367 TGCAAGTATATCACATCTCCGTAC 58.231 41.667 0.00 0.00 0.00 3.67
1952 2262 6.144080 GCAAGTATATCACATCTCCGTACAAC 59.856 42.308 0.00 0.00 0.00 3.32
1960 2270 4.984785 CACATCTCCGTACAACTATGGATG 59.015 45.833 0.00 0.00 37.41 3.51
1961 2271 4.039245 ACATCTCCGTACAACTATGGATGG 59.961 45.833 0.00 0.00 46.67 3.51
1966 2276 5.149239 TCCGTACAACTATGGATGGGATAA 58.851 41.667 0.00 0.00 45.50 1.75
1983 2293 3.054361 GGATAAGACCCACCTCAACATGT 60.054 47.826 0.00 0.00 0.00 3.21
1987 2297 2.039879 AGACCCACCTCAACATGTAACC 59.960 50.000 0.00 0.00 0.00 2.85
1988 2298 1.271163 ACCCACCTCAACATGTAACCG 60.271 52.381 0.00 0.00 0.00 4.44
1989 2299 1.002659 CCCACCTCAACATGTAACCGA 59.997 52.381 0.00 0.00 0.00 4.69
1993 2310 2.027192 ACCTCAACATGTAACCGAGCAT 60.027 45.455 0.00 0.00 0.00 3.79
2003 2320 5.759506 TGTAACCGAGCATTGAAAAAGAA 57.240 34.783 0.00 0.00 0.00 2.52
2021 2338 0.968405 AATCACCACCACATGCAACC 59.032 50.000 0.00 0.00 0.00 3.77
2022 2339 0.178967 ATCACCACCACATGCAACCA 60.179 50.000 0.00 0.00 0.00 3.67
2043 2360 8.937884 CAACCATGCATGAGAAAATATTTTTCA 58.062 29.630 28.31 17.35 0.00 2.69
2044 2361 9.504708 AACCATGCATGAGAAAATATTTTTCAA 57.495 25.926 28.31 4.27 0.00 2.69
2045 2362 9.675464 ACCATGCATGAGAAAATATTTTTCAAT 57.325 25.926 28.31 6.21 0.00 2.57
2129 2446 8.840833 AAGCCGAATGTATTTTAAATTTTGGT 57.159 26.923 0.00 0.00 0.00 3.67
2130 2447 8.840833 AGCCGAATGTATTTTAAATTTTGGTT 57.159 26.923 0.00 0.00 0.00 3.67
2131 2448 8.931775 AGCCGAATGTATTTTAAATTTTGGTTC 58.068 29.630 0.00 0.00 0.00 3.62
2132 2449 8.713271 GCCGAATGTATTTTAAATTTTGGTTCA 58.287 29.630 0.00 0.00 0.00 3.18
2182 2499 8.945481 ATTTCACACAACAAAATCTCATTGAA 57.055 26.923 0.00 0.00 0.00 2.69
2183 2500 8.768957 TTTCACACAACAAAATCTCATTGAAA 57.231 26.923 0.00 0.00 0.00 2.69
2184 2501 8.945481 TTCACACAACAAAATCTCATTGAAAT 57.055 26.923 0.00 0.00 0.00 2.17
2208 2525 9.764363 AATATATTACAAGTGATTCTCGAAGCA 57.236 29.630 0.00 0.00 33.94 3.91
2209 2526 9.764363 ATATATTACAAGTGATTCTCGAAGCAA 57.236 29.630 0.00 0.00 38.53 3.91
2210 2527 6.992063 ATTACAAGTGATTCTCGAAGCAAT 57.008 33.333 0.00 0.00 38.53 3.56
2211 2528 4.675190 ACAAGTGATTCTCGAAGCAATG 57.325 40.909 0.00 5.10 38.53 2.82
2212 2529 3.120060 ACAAGTGATTCTCGAAGCAATGC 60.120 43.478 0.00 0.00 38.53 3.56
2213 2530 1.662629 AGTGATTCTCGAAGCAATGCG 59.337 47.619 0.00 0.00 38.53 4.73
2214 2531 1.394917 GTGATTCTCGAAGCAATGCGT 59.605 47.619 0.00 0.00 38.53 5.24
2215 2532 1.394572 TGATTCTCGAAGCAATGCGTG 59.605 47.619 0.00 0.00 33.35 5.34
2216 2533 0.729116 ATTCTCGAAGCAATGCGTGG 59.271 50.000 0.00 0.00 0.00 4.94
2217 2534 1.298157 TTCTCGAAGCAATGCGTGGG 61.298 55.000 0.00 0.00 0.00 4.61
2218 2535 2.745884 TCGAAGCAATGCGTGGGG 60.746 61.111 0.00 0.00 0.00 4.96
2219 2536 3.055719 CGAAGCAATGCGTGGGGT 61.056 61.111 0.00 0.00 0.00 4.95
2220 2537 2.625823 CGAAGCAATGCGTGGGGTT 61.626 57.895 0.00 0.00 0.00 4.11
2221 2538 1.302383 CGAAGCAATGCGTGGGGTTA 61.302 55.000 0.00 0.00 0.00 2.85
2222 2539 0.451783 GAAGCAATGCGTGGGGTTAG 59.548 55.000 0.00 0.00 0.00 2.34
2223 2540 0.251165 AAGCAATGCGTGGGGTTAGT 60.251 50.000 0.00 0.00 0.00 2.24
2224 2541 0.251165 AGCAATGCGTGGGGTTAGTT 60.251 50.000 0.00 0.00 0.00 2.24
2225 2542 0.601057 GCAATGCGTGGGGTTAGTTT 59.399 50.000 0.00 0.00 0.00 2.66
2226 2543 1.668628 GCAATGCGTGGGGTTAGTTTG 60.669 52.381 0.00 0.00 0.00 2.93
2227 2544 1.883275 CAATGCGTGGGGTTAGTTTGA 59.117 47.619 0.00 0.00 0.00 2.69
2228 2545 1.821216 ATGCGTGGGGTTAGTTTGAG 58.179 50.000 0.00 0.00 0.00 3.02
2229 2546 0.887387 TGCGTGGGGTTAGTTTGAGC 60.887 55.000 0.00 0.00 0.00 4.26
2230 2547 1.908066 GCGTGGGGTTAGTTTGAGCG 61.908 60.000 0.00 0.00 0.00 5.03
2231 2548 0.320073 CGTGGGGTTAGTTTGAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
2232 2549 1.674817 CGTGGGGTTAGTTTGAGCGAT 60.675 52.381 0.00 0.00 0.00 4.58
2233 2550 2.007608 GTGGGGTTAGTTTGAGCGATC 58.992 52.381 0.00 0.00 0.00 3.69
2234 2551 1.626321 TGGGGTTAGTTTGAGCGATCA 59.374 47.619 0.00 0.00 0.00 2.92
2235 2552 2.007608 GGGGTTAGTTTGAGCGATCAC 58.992 52.381 1.08 0.00 0.00 3.06
2236 2553 2.354805 GGGGTTAGTTTGAGCGATCACT 60.355 50.000 1.08 0.02 0.00 3.41
2237 2554 2.930682 GGGTTAGTTTGAGCGATCACTC 59.069 50.000 1.08 3.68 37.19 3.51
2238 2555 3.585862 GGTTAGTTTGAGCGATCACTCA 58.414 45.455 9.38 9.38 44.84 3.41
2243 2560 3.122150 TGAGCGATCACTCAAACCG 57.878 52.632 11.00 0.00 43.59 4.44
2244 2561 0.317160 TGAGCGATCACTCAAACCGT 59.683 50.000 11.00 0.00 43.59 4.83
2245 2562 1.542472 TGAGCGATCACTCAAACCGTA 59.458 47.619 11.00 0.00 43.59 4.02
2246 2563 2.165641 TGAGCGATCACTCAAACCGTAT 59.834 45.455 11.00 0.00 43.59 3.06
2247 2564 3.187700 GAGCGATCACTCAAACCGTATT 58.812 45.455 5.86 0.00 36.65 1.89
2248 2565 3.596214 AGCGATCACTCAAACCGTATTT 58.404 40.909 0.00 0.00 0.00 1.40
2249 2566 3.617263 AGCGATCACTCAAACCGTATTTC 59.383 43.478 0.00 0.00 0.00 2.17
2250 2567 3.369756 GCGATCACTCAAACCGTATTTCA 59.630 43.478 0.00 0.00 0.00 2.69
2251 2568 4.724036 GCGATCACTCAAACCGTATTTCAC 60.724 45.833 0.00 0.00 0.00 3.18
2252 2569 4.387559 CGATCACTCAAACCGTATTTCACA 59.612 41.667 0.00 0.00 0.00 3.58
2253 2570 5.107259 CGATCACTCAAACCGTATTTCACAA 60.107 40.000 0.00 0.00 0.00 3.33
2254 2571 6.565060 CGATCACTCAAACCGTATTTCACAAA 60.565 38.462 0.00 0.00 0.00 2.83
2255 2572 6.438259 TCACTCAAACCGTATTTCACAAAA 57.562 33.333 0.00 0.00 0.00 2.44
2256 2573 7.033530 TCACTCAAACCGTATTTCACAAAAT 57.966 32.000 0.00 0.00 38.61 1.82
2257 2574 7.484975 TCACTCAAACCGTATTTCACAAAATT 58.515 30.769 0.00 0.00 36.49 1.82
2258 2575 8.622157 TCACTCAAACCGTATTTCACAAAATTA 58.378 29.630 0.00 0.00 36.49 1.40
2259 2576 9.405587 CACTCAAACCGTATTTCACAAAATTAT 57.594 29.630 0.00 0.00 36.49 1.28
2282 2599 2.232399 GGAAACCTTCCCTAAAACGCA 58.768 47.619 0.00 0.00 44.30 5.24
2283 2600 2.228103 GGAAACCTTCCCTAAAACGCAG 59.772 50.000 0.00 0.00 44.30 5.18
2284 2601 4.308223 GGAAACCTTCCCTAAAACGCAGT 61.308 47.826 0.00 0.00 44.48 4.40
2285 2602 2.180432 ACCTTCCCTAAAACGCAGTC 57.820 50.000 0.00 0.00 45.00 3.51
2286 2603 1.076332 CCTTCCCTAAAACGCAGTCG 58.924 55.000 0.00 0.00 45.00 4.18
2296 2613 4.164252 CGCAGTCGTTCCACCTAC 57.836 61.111 0.00 0.00 0.00 3.18
2297 2614 1.585006 CGCAGTCGTTCCACCTACT 59.415 57.895 0.00 0.00 0.00 2.57
2298 2615 0.038526 CGCAGTCGTTCCACCTACTT 60.039 55.000 0.00 0.00 0.00 2.24
2299 2616 1.604693 CGCAGTCGTTCCACCTACTTT 60.605 52.381 0.00 0.00 0.00 2.66
2300 2617 1.798813 GCAGTCGTTCCACCTACTTTG 59.201 52.381 0.00 0.00 0.00 2.77
2301 2618 2.547218 GCAGTCGTTCCACCTACTTTGA 60.547 50.000 0.00 0.00 0.00 2.69
2302 2619 3.318017 CAGTCGTTCCACCTACTTTGAG 58.682 50.000 0.00 0.00 0.00 3.02
2303 2620 2.963782 AGTCGTTCCACCTACTTTGAGT 59.036 45.455 0.00 0.00 0.00 3.41
2304 2621 3.005578 AGTCGTTCCACCTACTTTGAGTC 59.994 47.826 0.00 0.00 0.00 3.36
2305 2622 2.298163 TCGTTCCACCTACTTTGAGTCC 59.702 50.000 0.00 0.00 0.00 3.85
2306 2623 2.036733 CGTTCCACCTACTTTGAGTCCA 59.963 50.000 0.00 0.00 0.00 4.02
2307 2624 3.493699 CGTTCCACCTACTTTGAGTCCAA 60.494 47.826 0.00 0.00 0.00 3.53
2308 2625 3.764237 TCCACCTACTTTGAGTCCAAC 57.236 47.619 0.00 0.00 30.88 3.77
2309 2626 2.370849 TCCACCTACTTTGAGTCCAACC 59.629 50.000 0.00 0.00 30.88 3.77
2310 2627 2.105821 CCACCTACTTTGAGTCCAACCA 59.894 50.000 0.00 0.00 30.88 3.67
2311 2628 3.139077 CACCTACTTTGAGTCCAACCAC 58.861 50.000 0.00 0.00 30.88 4.16
2312 2629 2.775384 ACCTACTTTGAGTCCAACCACA 59.225 45.455 0.00 0.00 30.88 4.17
2313 2630 3.201266 ACCTACTTTGAGTCCAACCACAA 59.799 43.478 0.00 0.00 30.88 3.33
2314 2631 4.204012 CCTACTTTGAGTCCAACCACAAA 58.796 43.478 0.00 0.00 30.88 2.83
2315 2632 4.642885 CCTACTTTGAGTCCAACCACAAAA 59.357 41.667 0.00 0.00 33.05 2.44
2316 2633 5.126384 CCTACTTTGAGTCCAACCACAAAAA 59.874 40.000 0.00 0.00 33.05 1.94
2317 2634 5.072040 ACTTTGAGTCCAACCACAAAAAG 57.928 39.130 0.00 0.00 33.05 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.123077 TGCAGTATACAGGGGAGCAG 58.877 55.000 5.50 0.00 0.00 4.24
1 2 1.209504 GTTGCAGTATACAGGGGAGCA 59.790 52.381 5.50 2.77 0.00 4.26
2 3 1.475213 GGTTGCAGTATACAGGGGAGC 60.475 57.143 5.50 0.22 0.00 4.70
3 4 1.141053 GGGTTGCAGTATACAGGGGAG 59.859 57.143 5.50 0.00 0.00 4.30
4 5 1.209621 GGGTTGCAGTATACAGGGGA 58.790 55.000 5.50 0.00 0.00 4.81
5 6 0.182775 GGGGTTGCAGTATACAGGGG 59.817 60.000 5.50 0.00 0.00 4.79
6 7 0.916086 TGGGGTTGCAGTATACAGGG 59.084 55.000 5.50 0.00 0.00 4.45
7 8 1.559682 ACTGGGGTTGCAGTATACAGG 59.440 52.381 5.50 0.00 0.00 4.00
8 9 2.632377 CACTGGGGTTGCAGTATACAG 58.368 52.381 5.50 0.00 0.00 2.74
9 10 1.280710 CCACTGGGGTTGCAGTATACA 59.719 52.381 5.50 0.00 0.00 2.29
10 11 2.038387 CCACTGGGGTTGCAGTATAC 57.962 55.000 0.00 0.00 0.00 1.47
21 22 0.537188 CAGCTGTACTACCACTGGGG 59.463 60.000 5.25 0.00 44.81 4.96
22 23 0.537188 CCAGCTGTACTACCACTGGG 59.463 60.000 13.81 0.00 43.42 4.45
24 25 1.204941 GGTCCAGCTGTACTACCACTG 59.795 57.143 13.81 0.00 0.00 3.66
25 26 1.558233 GGTCCAGCTGTACTACCACT 58.442 55.000 13.81 0.00 0.00 4.00
26 27 0.172803 CGGTCCAGCTGTACTACCAC 59.827 60.000 13.81 0.00 0.00 4.16
27 28 0.038599 TCGGTCCAGCTGTACTACCA 59.961 55.000 13.81 3.55 0.00 3.25
28 29 0.739561 CTCGGTCCAGCTGTACTACC 59.260 60.000 13.81 12.96 0.00 3.18
29 30 0.100861 GCTCGGTCCAGCTGTACTAC 59.899 60.000 13.81 5.15 36.38 2.73
30 31 1.374343 CGCTCGGTCCAGCTGTACTA 61.374 60.000 13.81 0.00 37.25 1.82
31 32 2.701780 CGCTCGGTCCAGCTGTACT 61.702 63.158 13.81 0.00 37.25 2.73
32 33 2.202623 CGCTCGGTCCAGCTGTAC 60.203 66.667 13.81 6.98 37.25 2.90
33 34 3.449227 CCGCTCGGTCCAGCTGTA 61.449 66.667 13.81 0.00 37.25 2.74
72 73 4.525949 GAAGTACCCCGAGGCGGC 62.526 72.222 0.00 0.00 46.86 6.53
74 75 4.867599 GCGAAGTACCCCGAGGCG 62.868 72.222 8.45 0.00 36.11 5.52
75 76 4.867599 CGCGAAGTACCCCGAGGC 62.868 72.222 0.00 0.00 36.11 4.70
76 77 2.496828 AAACGCGAAGTACCCCGAGG 62.497 60.000 15.93 0.00 40.04 4.63
77 78 1.080298 AAACGCGAAGTACCCCGAG 60.080 57.895 15.93 7.52 0.00 4.63
78 79 1.373246 CAAACGCGAAGTACCCCGA 60.373 57.895 15.93 0.00 0.00 5.14
79 80 3.018840 GCAAACGCGAAGTACCCCG 62.019 63.158 15.93 0.00 0.00 5.73
80 81 1.962306 TGCAAACGCGAAGTACCCC 60.962 57.895 15.93 0.00 0.00 4.95
81 82 1.205820 GTGCAAACGCGAAGTACCC 59.794 57.895 15.93 0.00 0.00 3.69
82 83 1.421382 TAGTGCAAACGCGAAGTACC 58.579 50.000 15.93 0.00 0.00 3.34
83 84 3.855950 AGTATAGTGCAAACGCGAAGTAC 59.144 43.478 15.93 11.65 0.00 2.73
84 85 4.100529 GAGTATAGTGCAAACGCGAAGTA 58.899 43.478 15.93 0.00 0.00 2.24
85 86 2.921754 GAGTATAGTGCAAACGCGAAGT 59.078 45.455 15.93 0.00 0.00 3.01
86 87 2.921121 TGAGTATAGTGCAAACGCGAAG 59.079 45.455 15.93 2.43 0.00 3.79
87 88 2.921121 CTGAGTATAGTGCAAACGCGAA 59.079 45.455 15.93 0.00 0.00 4.70
88 89 2.526077 CTGAGTATAGTGCAAACGCGA 58.474 47.619 15.93 0.00 0.00 5.87
89 90 1.588404 CCTGAGTATAGTGCAAACGCG 59.412 52.381 3.53 3.53 0.00 6.01
90 91 1.933853 CCCTGAGTATAGTGCAAACGC 59.066 52.381 0.00 0.00 0.00 4.84
91 92 3.520290 TCCCTGAGTATAGTGCAAACG 57.480 47.619 0.00 0.00 0.00 3.60
92 93 5.283457 AGATCCCTGAGTATAGTGCAAAC 57.717 43.478 0.00 0.00 0.00 2.93
93 94 5.957771 AAGATCCCTGAGTATAGTGCAAA 57.042 39.130 0.00 0.00 0.00 3.68
94 95 5.425217 TGAAAGATCCCTGAGTATAGTGCAA 59.575 40.000 0.00 0.00 0.00 4.08
95 96 4.962362 TGAAAGATCCCTGAGTATAGTGCA 59.038 41.667 0.00 0.00 0.00 4.57
96 97 5.293560 GTGAAAGATCCCTGAGTATAGTGC 58.706 45.833 0.00 0.00 0.00 4.40
97 98 5.221541 GGGTGAAAGATCCCTGAGTATAGTG 60.222 48.000 0.00 0.00 40.48 2.74
98 99 4.902448 GGGTGAAAGATCCCTGAGTATAGT 59.098 45.833 0.00 0.00 40.48 2.12
99 100 4.021894 CGGGTGAAAGATCCCTGAGTATAG 60.022 50.000 0.00 0.00 41.40 1.31
100 101 3.895656 CGGGTGAAAGATCCCTGAGTATA 59.104 47.826 0.00 0.00 41.40 1.47
101 102 2.700897 CGGGTGAAAGATCCCTGAGTAT 59.299 50.000 0.00 0.00 41.40 2.12
102 103 2.108168 CGGGTGAAAGATCCCTGAGTA 58.892 52.381 0.00 0.00 41.40 2.59
103 104 0.905357 CGGGTGAAAGATCCCTGAGT 59.095 55.000 0.00 0.00 41.40 3.41
104 105 1.137872 CTCGGGTGAAAGATCCCTGAG 59.862 57.143 8.79 8.79 40.21 3.35
105 106 1.195115 CTCGGGTGAAAGATCCCTGA 58.805 55.000 0.00 0.00 41.40 3.86
106 107 0.462759 GCTCGGGTGAAAGATCCCTG 60.463 60.000 0.00 0.00 41.40 4.45
107 108 1.908483 GCTCGGGTGAAAGATCCCT 59.092 57.895 0.00 0.00 41.40 4.20
108 109 1.521681 CGCTCGGGTGAAAGATCCC 60.522 63.158 0.00 0.00 40.26 3.85
109 110 1.521681 CCGCTCGGGTGAAAGATCC 60.522 63.158 0.00 0.00 0.00 3.36
110 111 4.110493 CCGCTCGGGTGAAAGATC 57.890 61.111 0.00 0.00 0.00 2.75
126 127 2.452767 GCACACAAGCGGTACTACC 58.547 57.895 0.00 0.00 34.05 3.18
135 136 2.546321 CACTCGACGCACACAAGC 59.454 61.111 0.00 0.00 0.00 4.01
136 137 2.546321 GCACTCGACGCACACAAG 59.454 61.111 0.00 0.00 0.00 3.16
137 138 3.326981 CGCACTCGACGCACACAA 61.327 61.111 3.22 0.00 38.10 3.33
145 146 3.711541 AATACCCGGCGCACTCGAC 62.712 63.158 10.83 0.00 41.23 4.20
146 147 3.420214 GAATACCCGGCGCACTCGA 62.420 63.158 10.83 0.00 38.10 4.04
147 148 2.960129 GAATACCCGGCGCACTCG 60.960 66.667 10.83 3.09 39.07 4.18
148 149 2.588034 GGAATACCCGGCGCACTC 60.588 66.667 10.83 0.00 0.00 3.51
158 159 1.530283 CGTGGGGAAGGGGAATACC 59.470 63.158 0.00 0.00 39.11 2.73
159 160 1.153025 GCGTGGGGAAGGGGAATAC 60.153 63.158 0.00 0.00 0.00 1.89
160 161 2.380285 GGCGTGGGGAAGGGGAATA 61.380 63.158 0.00 0.00 0.00 1.75
161 162 3.739613 GGCGTGGGGAAGGGGAAT 61.740 66.667 0.00 0.00 0.00 3.01
167 168 4.410400 GTGGAGGGCGTGGGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
171 172 4.446413 GTACGTGGAGGGCGTGGG 62.446 72.222 0.00 0.00 42.87 4.61
172 173 4.446413 GGTACGTGGAGGGCGTGG 62.446 72.222 0.00 0.00 42.87 4.94
182 183 3.610619 GGGTTTCCCCCGGTACGTG 62.611 68.421 0.00 0.00 45.80 4.49
183 184 3.321648 GGGTTTCCCCCGGTACGT 61.322 66.667 0.00 0.00 45.80 3.57
192 193 0.910338 GACTGGTCCTAGGGTTTCCC 59.090 60.000 9.46 2.37 45.90 3.97
193 194 0.910338 GGACTGGTCCTAGGGTTTCC 59.090 60.000 9.46 7.52 46.16 3.13
203 204 2.682494 TGCTACCCGGACTGGTCC 60.682 66.667 0.73 9.55 46.18 4.46
204 205 2.893398 CTGCTACCCGGACTGGTC 59.107 66.667 0.73 0.00 39.91 4.02
205 206 3.391382 GCTGCTACCCGGACTGGT 61.391 66.667 0.73 0.00 42.62 4.00
206 207 4.514577 CGCTGCTACCCGGACTGG 62.515 72.222 0.73 0.00 37.55 4.00
207 208 3.701604 GACGCTGCTACCCGGACTG 62.702 68.421 0.73 0.00 0.00 3.51
208 209 3.450115 GACGCTGCTACCCGGACT 61.450 66.667 0.73 0.00 0.00 3.85
209 210 4.849329 CGACGCTGCTACCCGGAC 62.849 72.222 0.73 0.00 0.00 4.79
211 212 4.849329 GACGACGCTGCTACCCGG 62.849 72.222 0.00 0.00 0.00 5.73
212 213 3.411418 ATGACGACGCTGCTACCCG 62.411 63.158 0.00 0.00 0.00 5.28
213 214 1.589196 GATGACGACGCTGCTACCC 60.589 63.158 0.00 0.00 0.00 3.69
214 215 1.939785 CGATGACGACGCTGCTACC 60.940 63.158 0.00 0.00 42.66 3.18
215 216 1.194896 GACGATGACGACGCTGCTAC 61.195 60.000 0.00 0.00 42.66 3.58
216 217 1.062047 GACGATGACGACGCTGCTA 59.938 57.895 0.00 0.00 42.66 3.49
217 218 2.202492 GACGATGACGACGCTGCT 60.202 61.111 0.00 0.00 42.66 4.24
223 224 2.681666 CAACGCGACGATGACGAC 59.318 61.111 15.93 0.00 42.66 4.34
224 225 3.169924 GCAACGCGACGATGACGA 61.170 61.111 15.93 0.00 42.66 4.20
225 226 2.583141 GAAGCAACGCGACGATGACG 62.583 60.000 15.93 0.00 45.75 4.35
226 227 1.057361 GAAGCAACGCGACGATGAC 59.943 57.895 15.93 3.08 31.46 3.06
227 228 1.071019 GAGAAGCAACGCGACGATGA 61.071 55.000 15.93 0.00 31.46 2.92
228 229 1.341802 GAGAAGCAACGCGACGATG 59.658 57.895 15.93 7.38 32.96 3.84
229 230 2.152699 CGAGAAGCAACGCGACGAT 61.153 57.895 15.93 0.00 35.31 3.73
230 231 2.799502 CGAGAAGCAACGCGACGA 60.800 61.111 15.93 0.00 35.31 4.20
240 241 2.558313 GCAACACCTGCGAGAAGC 59.442 61.111 0.00 0.00 42.37 3.86
248 249 0.168788 CGCATACCAAGCAACACCTG 59.831 55.000 0.00 0.00 0.00 4.00
249 250 0.960364 CCGCATACCAAGCAACACCT 60.960 55.000 0.00 0.00 0.00 4.00
250 251 1.506262 CCGCATACCAAGCAACACC 59.494 57.895 0.00 0.00 0.00 4.16
251 252 1.154035 GCCGCATACCAAGCAACAC 60.154 57.895 0.00 0.00 0.00 3.32
252 253 1.303236 AGCCGCATACCAAGCAACA 60.303 52.632 0.00 0.00 0.00 3.33
253 254 1.026718 AGAGCCGCATACCAAGCAAC 61.027 55.000 0.00 0.00 0.00 4.17
254 255 0.744414 GAGAGCCGCATACCAAGCAA 60.744 55.000 0.00 0.00 0.00 3.91
255 256 1.153369 GAGAGCCGCATACCAAGCA 60.153 57.895 0.00 0.00 0.00 3.91
256 257 1.889573 GGAGAGCCGCATACCAAGC 60.890 63.158 0.00 0.00 0.00 4.01
257 258 4.445699 GGAGAGCCGCATACCAAG 57.554 61.111 0.00 0.00 0.00 3.61
267 268 1.038130 TCCTAGCACTTCGGAGAGCC 61.038 60.000 9.75 0.00 39.93 4.70
268 269 0.383949 CTCCTAGCACTTCGGAGAGC 59.616 60.000 4.77 4.77 45.67 4.09
269 270 1.403679 CACTCCTAGCACTTCGGAGAG 59.596 57.143 17.56 9.45 45.67 3.20
270 271 1.271982 ACACTCCTAGCACTTCGGAGA 60.272 52.381 17.56 0.00 45.67 3.71
272 273 0.888619 CACACTCCTAGCACTTCGGA 59.111 55.000 0.00 0.00 0.00 4.55
273 274 0.108615 CCACACTCCTAGCACTTCGG 60.109 60.000 0.00 0.00 0.00 4.30
274 275 0.603569 ACCACACTCCTAGCACTTCG 59.396 55.000 0.00 0.00 0.00 3.79
275 276 1.941668 GCACCACACTCCTAGCACTTC 60.942 57.143 0.00 0.00 0.00 3.01
276 277 0.035458 GCACCACACTCCTAGCACTT 59.965 55.000 0.00 0.00 0.00 3.16
277 278 1.121407 TGCACCACACTCCTAGCACT 61.121 55.000 0.00 0.00 0.00 4.40
278 279 0.250295 TTGCACCACACTCCTAGCAC 60.250 55.000 0.00 0.00 0.00 4.40
279 280 0.472044 TTTGCACCACACTCCTAGCA 59.528 50.000 0.00 0.00 0.00 3.49
280 281 1.826385 ATTTGCACCACACTCCTAGC 58.174 50.000 0.00 0.00 0.00 3.42
281 282 3.679389 AGAATTTGCACCACACTCCTAG 58.321 45.455 0.00 0.00 0.00 3.02
282 283 3.788227 AGAATTTGCACCACACTCCTA 57.212 42.857 0.00 0.00 0.00 2.94
283 284 2.664402 AGAATTTGCACCACACTCCT 57.336 45.000 0.00 0.00 0.00 3.69
284 285 2.350772 CGAAGAATTTGCACCACACTCC 60.351 50.000 0.00 0.00 0.00 3.85
285 286 2.350772 CCGAAGAATTTGCACCACACTC 60.351 50.000 0.00 0.00 0.00 3.51
286 287 1.608590 CCGAAGAATTTGCACCACACT 59.391 47.619 0.00 0.00 0.00 3.55
287 288 1.606668 TCCGAAGAATTTGCACCACAC 59.393 47.619 0.00 0.00 0.00 3.82
288 289 1.879380 CTCCGAAGAATTTGCACCACA 59.121 47.619 0.00 0.00 0.00 4.17
289 290 1.200020 CCTCCGAAGAATTTGCACCAC 59.800 52.381 0.00 0.00 0.00 4.16
290 291 1.073125 TCCTCCGAAGAATTTGCACCA 59.927 47.619 0.00 0.00 0.00 4.17
291 292 1.468914 GTCCTCCGAAGAATTTGCACC 59.531 52.381 0.00 0.00 0.00 5.01
292 293 1.128692 CGTCCTCCGAAGAATTTGCAC 59.871 52.381 0.00 0.00 39.56 4.57
293 294 1.438651 CGTCCTCCGAAGAATTTGCA 58.561 50.000 0.00 0.00 39.56 4.08
294 295 0.097150 GCGTCCTCCGAAGAATTTGC 59.903 55.000 0.00 0.00 39.56 3.68
295 296 1.394917 CTGCGTCCTCCGAAGAATTTG 59.605 52.381 0.00 0.00 45.88 2.32
296 297 1.726853 CTGCGTCCTCCGAAGAATTT 58.273 50.000 0.00 0.00 45.88 1.82
297 298 0.741221 GCTGCGTCCTCCGAAGAATT 60.741 55.000 0.00 0.00 45.88 2.17
298 299 1.153549 GCTGCGTCCTCCGAAGAAT 60.154 57.895 0.00 0.00 45.88 2.40
299 300 2.261671 GCTGCGTCCTCCGAAGAA 59.738 61.111 0.00 0.00 45.88 2.52
300 301 4.116328 CGCTGCGTCCTCCGAAGA 62.116 66.667 14.93 0.00 45.88 2.87
313 314 3.499737 GATGACCCGCAACCGCTG 61.500 66.667 0.00 0.00 35.30 5.18
314 315 2.819984 AATGATGACCCGCAACCGCT 62.820 55.000 0.00 0.00 35.30 5.52
315 316 2.406616 AATGATGACCCGCAACCGC 61.407 57.895 0.00 0.00 0.00 5.68
316 317 1.305219 ACAATGATGACCCGCAACCG 61.305 55.000 0.00 0.00 0.00 4.44
317 318 0.887933 AACAATGATGACCCGCAACC 59.112 50.000 0.00 0.00 0.00 3.77
318 319 2.723124 AAACAATGATGACCCGCAAC 57.277 45.000 0.00 0.00 0.00 4.17
319 320 2.351253 CGAAAACAATGATGACCCGCAA 60.351 45.455 0.00 0.00 0.00 4.85
320 321 1.198867 CGAAAACAATGATGACCCGCA 59.801 47.619 0.00 0.00 0.00 5.69
321 322 1.199097 ACGAAAACAATGATGACCCGC 59.801 47.619 0.00 0.00 0.00 6.13
322 323 2.473868 CGACGAAAACAATGATGACCCG 60.474 50.000 0.00 0.00 0.00 5.28
323 324 2.739913 TCGACGAAAACAATGATGACCC 59.260 45.455 0.00 0.00 0.00 4.46
324 325 4.494199 GGATCGACGAAAACAATGATGACC 60.494 45.833 0.00 0.00 0.00 4.02
325 326 4.578601 GGATCGACGAAAACAATGATGAC 58.421 43.478 0.00 0.00 0.00 3.06
326 327 3.305897 CGGATCGACGAAAACAATGATGA 59.694 43.478 0.00 0.00 35.47 2.92
327 328 3.305897 TCGGATCGACGAAAACAATGATG 59.694 43.478 0.00 0.00 40.34 3.07
328 329 3.306166 GTCGGATCGACGAAAACAATGAT 59.694 43.478 0.00 0.00 46.56 2.45
329 330 2.664568 GTCGGATCGACGAAAACAATGA 59.335 45.455 0.00 0.00 46.56 2.57
330 331 3.021355 GTCGGATCGACGAAAACAATG 57.979 47.619 0.00 0.00 46.56 2.82
341 342 1.530323 TGTCAACTGAGTCGGATCGA 58.470 50.000 5.81 0.00 0.00 3.59
342 343 2.568696 ATGTCAACTGAGTCGGATCG 57.431 50.000 5.81 0.00 0.00 3.69
343 344 5.000012 ACTAATGTCAACTGAGTCGGATC 58.000 43.478 5.81 0.00 0.00 3.36
344 345 5.407407 AACTAATGTCAACTGAGTCGGAT 57.593 39.130 5.81 0.00 0.00 4.18
345 346 4.866508 AACTAATGTCAACTGAGTCGGA 57.133 40.909 5.81 0.00 0.00 4.55
346 347 5.230942 AGAAACTAATGTCAACTGAGTCGG 58.769 41.667 0.00 0.00 0.00 4.79
347 348 6.771188 AAGAAACTAATGTCAACTGAGTCG 57.229 37.500 0.00 0.00 0.00 4.18
374 375 9.974980 ACGCCAAAAAGAAATAAAAGATAAAGA 57.025 25.926 0.00 0.00 0.00 2.52
376 377 8.491950 GCACGCCAAAAAGAAATAAAAGATAAA 58.508 29.630 0.00 0.00 0.00 1.40
377 378 7.870445 AGCACGCCAAAAAGAAATAAAAGATAA 59.130 29.630 0.00 0.00 0.00 1.75
378 379 7.328249 CAGCACGCCAAAAAGAAATAAAAGATA 59.672 33.333 0.00 0.00 0.00 1.98
379 380 6.146021 CAGCACGCCAAAAAGAAATAAAAGAT 59.854 34.615 0.00 0.00 0.00 2.40
380 381 5.461737 CAGCACGCCAAAAAGAAATAAAAGA 59.538 36.000 0.00 0.00 0.00 2.52
381 382 5.333263 CCAGCACGCCAAAAAGAAATAAAAG 60.333 40.000 0.00 0.00 0.00 2.27
382 383 4.509600 CCAGCACGCCAAAAAGAAATAAAA 59.490 37.500 0.00 0.00 0.00 1.52
383 384 4.054671 CCAGCACGCCAAAAAGAAATAAA 58.945 39.130 0.00 0.00 0.00 1.40
384 385 3.068873 ACCAGCACGCCAAAAAGAAATAA 59.931 39.130 0.00 0.00 0.00 1.40
385 386 2.625790 ACCAGCACGCCAAAAAGAAATA 59.374 40.909 0.00 0.00 0.00 1.40
386 387 1.412343 ACCAGCACGCCAAAAAGAAAT 59.588 42.857 0.00 0.00 0.00 2.17
387 388 0.820871 ACCAGCACGCCAAAAAGAAA 59.179 45.000 0.00 0.00 0.00 2.52
388 389 0.102120 CACCAGCACGCCAAAAAGAA 59.898 50.000 0.00 0.00 0.00 2.52
389 390 1.732917 CACCAGCACGCCAAAAAGA 59.267 52.632 0.00 0.00 0.00 2.52
390 391 1.950630 GCACCAGCACGCCAAAAAG 60.951 57.895 0.00 0.00 41.58 2.27
391 392 1.954362 AAGCACCAGCACGCCAAAAA 61.954 50.000 0.00 0.00 45.49 1.94
392 393 2.422231 AAGCACCAGCACGCCAAAA 61.422 52.632 0.00 0.00 45.49 2.44
393 394 2.832661 AAGCACCAGCACGCCAAA 60.833 55.556 0.00 0.00 45.49 3.28
394 395 3.594775 CAAGCACCAGCACGCCAA 61.595 61.111 0.00 0.00 45.49 4.52
395 396 4.873810 ACAAGCACCAGCACGCCA 62.874 61.111 0.00 0.00 45.49 5.69
396 397 4.332637 CACAAGCACCAGCACGCC 62.333 66.667 0.00 0.00 45.49 5.68
397 398 3.124798 AACACAAGCACCAGCACGC 62.125 57.895 0.00 0.00 45.49 5.34
398 399 1.298563 CAACACAAGCACCAGCACG 60.299 57.895 0.00 0.00 45.49 5.34
399 400 0.173255 AACAACACAAGCACCAGCAC 59.827 50.000 0.00 0.00 45.49 4.40
400 401 0.894141 AAACAACACAAGCACCAGCA 59.106 45.000 0.00 0.00 45.49 4.41
401 402 1.280066 CAAACAACACAAGCACCAGC 58.720 50.000 0.00 0.00 42.56 4.85
402 403 1.925229 CCAAACAACACAAGCACCAG 58.075 50.000 0.00 0.00 0.00 4.00
403 404 0.108424 GCCAAACAACACAAGCACCA 60.108 50.000 0.00 0.00 0.00 4.17
404 405 0.809636 GGCCAAACAACACAAGCACC 60.810 55.000 0.00 0.00 0.00 5.01
405 406 1.145162 CGGCCAAACAACACAAGCAC 61.145 55.000 2.24 0.00 0.00 4.40
406 407 1.140589 CGGCCAAACAACACAAGCA 59.859 52.632 2.24 0.00 0.00 3.91
407 408 0.594796 CTCGGCCAAACAACACAAGC 60.595 55.000 2.24 0.00 0.00 4.01
408 409 0.594796 GCTCGGCCAAACAACACAAG 60.595 55.000 2.24 0.00 0.00 3.16
409 410 1.315981 TGCTCGGCCAAACAACACAA 61.316 50.000 2.24 0.00 0.00 3.33
410 411 1.106351 ATGCTCGGCCAAACAACACA 61.106 50.000 2.24 0.00 0.00 3.72
411 412 0.031994 AATGCTCGGCCAAACAACAC 59.968 50.000 2.24 0.00 0.00 3.32
412 413 0.031857 CAATGCTCGGCCAAACAACA 59.968 50.000 2.24 0.00 0.00 3.33
413 414 0.313672 TCAATGCTCGGCCAAACAAC 59.686 50.000 2.24 0.00 0.00 3.32
414 415 1.035923 TTCAATGCTCGGCCAAACAA 58.964 45.000 2.24 0.00 0.00 2.83
415 416 0.313672 GTTCAATGCTCGGCCAAACA 59.686 50.000 2.24 0.00 0.00 2.83
416 417 0.598065 AGTTCAATGCTCGGCCAAAC 59.402 50.000 2.24 0.00 0.00 2.93
417 418 0.881118 GAGTTCAATGCTCGGCCAAA 59.119 50.000 2.24 0.00 0.00 3.28
418 419 0.250684 TGAGTTCAATGCTCGGCCAA 60.251 50.000 2.24 0.00 35.85 4.52
419 420 0.955428 GTGAGTTCAATGCTCGGCCA 60.955 55.000 2.24 0.00 35.85 5.36
420 421 0.955428 TGTGAGTTCAATGCTCGGCC 60.955 55.000 0.00 0.00 35.85 6.13
421 422 1.089920 ATGTGAGTTCAATGCTCGGC 58.910 50.000 0.00 0.00 35.85 5.54
422 423 3.837213 AAATGTGAGTTCAATGCTCGG 57.163 42.857 0.00 0.00 35.85 4.63
423 424 7.022979 TGATAAAAATGTGAGTTCAATGCTCG 58.977 34.615 0.00 0.00 35.85 5.03
424 425 8.025445 ACTGATAAAAATGTGAGTTCAATGCTC 58.975 33.333 0.00 0.00 0.00 4.26
425 426 7.889469 ACTGATAAAAATGTGAGTTCAATGCT 58.111 30.769 0.00 0.00 0.00 3.79
426 427 8.430063 CAACTGATAAAAATGTGAGTTCAATGC 58.570 33.333 0.00 0.00 0.00 3.56
427 428 8.918658 CCAACTGATAAAAATGTGAGTTCAATG 58.081 33.333 0.00 0.00 0.00 2.82
428 429 8.641541 ACCAACTGATAAAAATGTGAGTTCAAT 58.358 29.630 0.00 0.00 0.00 2.57
429 430 8.006298 ACCAACTGATAAAAATGTGAGTTCAA 57.994 30.769 0.00 0.00 0.00 2.69
430 431 7.581213 ACCAACTGATAAAAATGTGAGTTCA 57.419 32.000 0.00 0.00 0.00 3.18
431 432 7.595130 GGAACCAACTGATAAAAATGTGAGTTC 59.405 37.037 0.00 0.00 0.00 3.01
432 433 7.287696 AGGAACCAACTGATAAAAATGTGAGTT 59.712 33.333 0.00 0.00 0.00 3.01
433 434 6.777580 AGGAACCAACTGATAAAAATGTGAGT 59.222 34.615 0.00 0.00 0.00 3.41
434 435 7.219484 AGGAACCAACTGATAAAAATGTGAG 57.781 36.000 0.00 0.00 0.00 3.51
435 436 8.877864 ATAGGAACCAACTGATAAAAATGTGA 57.122 30.769 0.00 0.00 0.00 3.58
450 451 9.905713 GCCTCATTATATTGATATAGGAACCAA 57.094 33.333 0.00 0.00 0.00 3.67
451 452 8.204160 CGCCTCATTATATTGATATAGGAACCA 58.796 37.037 0.00 0.00 0.00 3.67
452 453 8.421784 TCGCCTCATTATATTGATATAGGAACC 58.578 37.037 0.00 0.00 0.00 3.62
453 454 9.817809 TTCGCCTCATTATATTGATATAGGAAC 57.182 33.333 0.00 0.00 0.00 3.62
456 457 8.768955 GCTTTCGCCTCATTATATTGATATAGG 58.231 37.037 0.00 0.00 0.00 2.57
511 512 6.226787 CAATTACTACTCCCCTCACATGATC 58.773 44.000 0.00 0.00 0.00 2.92
512 513 5.455326 GCAATTACTACTCCCCTCACATGAT 60.455 44.000 0.00 0.00 0.00 2.45
516 517 3.055385 GTGCAATTACTACTCCCCTCACA 60.055 47.826 0.00 0.00 0.00 3.58
544 762 7.673641 AGAGAAGATGATTAAGTGGAGATGT 57.326 36.000 0.00 0.00 0.00 3.06
559 777 8.945481 ACAGAGTCATCAATAAAGAGAAGATG 57.055 34.615 0.00 0.00 37.90 2.90
571 789 7.362401 GCCTTGAACATTAACAGAGTCATCAAT 60.362 37.037 0.00 0.00 0.00 2.57
573 791 5.412594 GCCTTGAACATTAACAGAGTCATCA 59.587 40.000 0.00 0.00 0.00 3.07
574 792 5.446473 CGCCTTGAACATTAACAGAGTCATC 60.446 44.000 0.00 0.00 0.00 2.92
575 793 4.393062 CGCCTTGAACATTAACAGAGTCAT 59.607 41.667 0.00 0.00 0.00 3.06
576 794 3.745975 CGCCTTGAACATTAACAGAGTCA 59.254 43.478 0.00 0.00 0.00 3.41
577 795 3.994392 TCGCCTTGAACATTAACAGAGTC 59.006 43.478 0.00 0.00 0.00 3.36
578 796 4.002906 TCGCCTTGAACATTAACAGAGT 57.997 40.909 0.00 0.00 0.00 3.24
579 797 4.142816 CCTTCGCCTTGAACATTAACAGAG 60.143 45.833 0.00 0.00 31.87 3.35
580 798 3.751175 CCTTCGCCTTGAACATTAACAGA 59.249 43.478 0.00 0.00 31.87 3.41
581 799 3.751175 TCCTTCGCCTTGAACATTAACAG 59.249 43.478 0.00 0.00 31.87 3.16
582 800 3.745799 TCCTTCGCCTTGAACATTAACA 58.254 40.909 0.00 0.00 31.87 2.41
583 801 4.379499 CCTTCCTTCGCCTTGAACATTAAC 60.379 45.833 0.00 0.00 31.87 2.01
584 802 3.756434 CCTTCCTTCGCCTTGAACATTAA 59.244 43.478 0.00 0.00 31.87 1.40
585 803 3.008594 TCCTTCCTTCGCCTTGAACATTA 59.991 43.478 0.00 0.00 31.87 1.90
586 804 2.162681 CCTTCCTTCGCCTTGAACATT 58.837 47.619 0.00 0.00 31.87 2.71
587 805 1.351017 TCCTTCCTTCGCCTTGAACAT 59.649 47.619 0.00 0.00 31.87 2.71
588 806 0.762418 TCCTTCCTTCGCCTTGAACA 59.238 50.000 0.00 0.00 31.87 3.18
589 807 1.443802 CTCCTTCCTTCGCCTTGAAC 58.556 55.000 0.00 0.00 31.87 3.18
590 808 0.324943 CCTCCTTCCTTCGCCTTGAA 59.675 55.000 0.00 0.00 34.74 2.69
591 809 0.544357 TCCTCCTTCCTTCGCCTTGA 60.544 55.000 0.00 0.00 0.00 3.02
592 810 0.107945 CTCCTCCTTCCTTCGCCTTG 60.108 60.000 0.00 0.00 0.00 3.61
593 811 1.904990 GCTCCTCCTTCCTTCGCCTT 61.905 60.000 0.00 0.00 0.00 4.35
594 812 2.363172 GCTCCTCCTTCCTTCGCCT 61.363 63.158 0.00 0.00 0.00 5.52
595 813 1.043673 TAGCTCCTCCTTCCTTCGCC 61.044 60.000 0.00 0.00 0.00 5.54
596 814 1.044611 ATAGCTCCTCCTTCCTTCGC 58.955 55.000 0.00 0.00 0.00 4.70
597 815 4.939052 TTAATAGCTCCTCCTTCCTTCG 57.061 45.455 0.00 0.00 0.00 3.79
598 816 6.016693 GCATTTTAATAGCTCCTCCTTCCTTC 60.017 42.308 0.00 0.00 0.00 3.46
599 817 5.830457 GCATTTTAATAGCTCCTCCTTCCTT 59.170 40.000 0.00 0.00 0.00 3.36
600 818 5.380900 GCATTTTAATAGCTCCTCCTTCCT 58.619 41.667 0.00 0.00 0.00 3.36
601 819 4.214332 CGCATTTTAATAGCTCCTCCTTCC 59.786 45.833 0.00 0.00 0.00 3.46
602 820 5.057149 TCGCATTTTAATAGCTCCTCCTTC 58.943 41.667 0.00 0.00 0.00 3.46
603 821 5.036117 TCGCATTTTAATAGCTCCTCCTT 57.964 39.130 0.00 0.00 0.00 3.36
604 822 4.345257 TCTCGCATTTTAATAGCTCCTCCT 59.655 41.667 0.00 0.00 0.00 3.69
605 823 4.632153 TCTCGCATTTTAATAGCTCCTCC 58.368 43.478 0.00 0.00 0.00 4.30
625 843 9.730705 TTATCACAAGAACTCTGAATGATTTCT 57.269 29.630 6.14 0.00 43.60 2.52
628 846 7.604164 ACGTTATCACAAGAACTCTGAATGATT 59.396 33.333 6.14 0.00 30.30 2.57
632 850 5.120830 GCACGTTATCACAAGAACTCTGAAT 59.879 40.000 0.00 0.00 0.00 2.57
642 860 3.363970 GGTTCACTGCACGTTATCACAAG 60.364 47.826 0.00 0.00 0.00 3.16
645 863 2.413837 AGGTTCACTGCACGTTATCAC 58.586 47.619 0.00 0.00 0.00 3.06
646 864 2.831685 AGGTTCACTGCACGTTATCA 57.168 45.000 0.00 0.00 0.00 2.15
647 865 3.496884 TGAAAGGTTCACTGCACGTTATC 59.503 43.478 0.00 0.00 34.08 1.75
648 866 3.472652 TGAAAGGTTCACTGCACGTTAT 58.527 40.909 0.00 0.00 34.08 1.89
649 867 2.907634 TGAAAGGTTCACTGCACGTTA 58.092 42.857 0.00 0.00 34.08 3.18
650 868 1.745232 TGAAAGGTTCACTGCACGTT 58.255 45.000 0.00 0.00 34.08 3.99
651 869 1.745232 TTGAAAGGTTCACTGCACGT 58.255 45.000 0.00 0.00 39.87 4.49
652 870 2.842208 TTTGAAAGGTTCACTGCACG 57.158 45.000 0.00 0.00 39.87 5.34
656 874 4.920376 ACACGATTTTGAAAGGTTCACTG 58.080 39.130 0.00 0.00 39.87 3.66
731 949 2.169352 CCCACGAGGACATTCAGAATCT 59.831 50.000 0.00 0.00 38.24 2.40
733 951 1.909302 ACCCACGAGGACATTCAGAAT 59.091 47.619 0.00 0.00 39.89 2.40
735 953 0.895530 GACCCACGAGGACATTCAGA 59.104 55.000 0.00 0.00 39.89 3.27
736 954 0.608130 TGACCCACGAGGACATTCAG 59.392 55.000 0.00 0.00 35.22 3.02
737 955 2.753319 TGACCCACGAGGACATTCA 58.247 52.632 0.00 0.00 35.22 2.57
741 959 1.229051 TCCATGACCCACGAGGACA 60.229 57.895 0.00 1.98 44.64 4.02
742 960 1.218316 GTCCATGACCCACGAGGAC 59.782 63.158 0.00 0.00 41.59 3.85
743 961 1.078528 AGTCCATGACCCACGAGGA 59.921 57.895 0.00 0.00 39.89 3.71
812 1048 8.119226 CCTCTTTGTTTATTGCTCGAAAGATAG 58.881 37.037 0.00 0.00 40.84 2.08
907 1158 2.223572 GGCATGTGATGGTTTTCGATCC 60.224 50.000 0.00 0.00 34.77 3.36
933 1184 0.671781 GCCGAGGGAATGATGGATCG 60.672 60.000 0.00 0.00 0.00 3.69
934 1185 0.397941 TGCCGAGGGAATGATGGATC 59.602 55.000 0.00 0.00 0.00 3.36
953 1204 1.296715 GAATGGAGTCACAGGCCGT 59.703 57.895 0.00 0.00 0.00 5.68
954 1205 0.742281 CTGAATGGAGTCACAGGCCG 60.742 60.000 0.00 0.00 0.00 6.13
955 1206 0.615331 TCTGAATGGAGTCACAGGCC 59.385 55.000 0.00 0.00 0.00 5.19
956 1207 2.559440 GATCTGAATGGAGTCACAGGC 58.441 52.381 0.00 0.00 0.00 4.85
957 1208 2.428530 TCGATCTGAATGGAGTCACAGG 59.571 50.000 0.00 0.00 0.00 4.00
984 1235 2.424601 CGCCATTGATGTTTCTGTGGAT 59.575 45.455 0.00 0.00 32.26 3.41
1328 1585 8.807667 AAGCAGAGAAAACATACAAAAATGAG 57.192 30.769 0.00 0.00 0.00 2.90
1430 1705 3.273434 CAAAGATGGAGCGGATGAAGAA 58.727 45.455 0.00 0.00 0.00 2.52
1487 1763 6.737720 ATCTAGCACAGATTCATCACCTAA 57.262 37.500 0.00 0.00 41.49 2.69
1534 1810 5.098211 GGCATATTTTGAAGAAGACACTGC 58.902 41.667 0.00 0.00 0.00 4.40
1598 1876 7.173562 ACAGATCGGATACTCATAGTACAGAAC 59.826 40.741 0.00 0.00 32.84 3.01
1599 1877 7.173390 CACAGATCGGATACTCATAGTACAGAA 59.827 40.741 0.00 0.00 32.84 3.02
1600 1878 6.651225 CACAGATCGGATACTCATAGTACAGA 59.349 42.308 0.00 0.00 32.84 3.41
1601 1879 6.651225 TCACAGATCGGATACTCATAGTACAG 59.349 42.308 0.00 0.00 32.84 2.74
1602 1880 6.531021 TCACAGATCGGATACTCATAGTACA 58.469 40.000 0.00 0.00 32.84 2.90
1603 1881 7.618502 ATCACAGATCGGATACTCATAGTAC 57.381 40.000 0.00 0.00 32.84 2.73
1604 1882 8.637196 AAATCACAGATCGGATACTCATAGTA 57.363 34.615 0.00 0.00 34.82 1.82
1605 1883 7.531857 AAATCACAGATCGGATACTCATAGT 57.468 36.000 0.00 0.00 0.00 2.12
1644 1922 8.303156 AGAATGACACTCATAGTACATATCAGC 58.697 37.037 0.00 0.00 35.76 4.26
1689 1967 6.483640 GGGCAAGAAGTGTATAGTTTATGGAG 59.516 42.308 0.00 0.00 0.00 3.86
1696 1974 4.104831 AGAGGGGCAAGAAGTGTATAGTT 58.895 43.478 0.00 0.00 0.00 2.24
1700 1978 3.456277 CCTAAGAGGGGCAAGAAGTGTAT 59.544 47.826 0.00 0.00 0.00 2.29
1716 1995 6.605471 TCTATTTTGCTGTCTCACCTAAGA 57.395 37.500 0.00 0.00 0.00 2.10
1720 1999 5.690464 AGATCTATTTTGCTGTCTCACCT 57.310 39.130 0.00 0.00 0.00 4.00
1748 2027 4.760715 GGATGATGCTCAATTGCTCATAGT 59.239 41.667 0.00 0.00 33.97 2.12
1749 2028 5.004448 AGGATGATGCTCAATTGCTCATAG 58.996 41.667 0.00 0.00 33.97 2.23
1750 2029 4.981812 AGGATGATGCTCAATTGCTCATA 58.018 39.130 0.00 0.00 33.97 2.15
1751 2030 3.833732 AGGATGATGCTCAATTGCTCAT 58.166 40.909 0.00 6.28 35.32 2.90
1752 2031 3.292492 AGGATGATGCTCAATTGCTCA 57.708 42.857 0.00 1.16 0.00 4.26
1753 2032 7.767659 TGTATATAGGATGATGCTCAATTGCTC 59.232 37.037 0.00 0.00 0.00 4.26
1754 2033 7.627311 TGTATATAGGATGATGCTCAATTGCT 58.373 34.615 0.00 0.00 0.00 3.91
1755 2034 7.854557 TGTATATAGGATGATGCTCAATTGC 57.145 36.000 0.00 0.00 0.00 3.56
1756 2035 9.053840 GGATGTATATAGGATGATGCTCAATTG 57.946 37.037 0.00 0.00 0.00 2.32
1757 2036 8.775151 TGGATGTATATAGGATGATGCTCAATT 58.225 33.333 0.00 0.00 0.00 2.32
1758 2037 8.328055 TGGATGTATATAGGATGATGCTCAAT 57.672 34.615 0.00 0.00 0.00 2.57
1759 2038 7.738437 TGGATGTATATAGGATGATGCTCAA 57.262 36.000 0.00 0.00 0.00 3.02
1787 2066 9.573133 GTCATGGTATAAATTTCTTTTGGTGAG 57.427 33.333 0.00 0.00 0.00 3.51
1788 2067 8.527810 GGTCATGGTATAAATTTCTTTTGGTGA 58.472 33.333 0.00 0.00 0.00 4.02
1791 2070 9.533253 GATGGTCATGGTATAAATTTCTTTTGG 57.467 33.333 0.00 0.00 0.00 3.28
1792 2071 9.236691 CGATGGTCATGGTATAAATTTCTTTTG 57.763 33.333 0.00 0.00 0.00 2.44
1793 2072 8.966868 ACGATGGTCATGGTATAAATTTCTTTT 58.033 29.630 0.00 0.00 0.00 2.27
1794 2073 8.519799 ACGATGGTCATGGTATAAATTTCTTT 57.480 30.769 0.00 0.00 0.00 2.52
1796 2075 7.993183 AGAACGATGGTCATGGTATAAATTTCT 59.007 33.333 0.00 0.00 0.00 2.52
1797 2076 8.154649 AGAACGATGGTCATGGTATAAATTTC 57.845 34.615 0.00 0.00 0.00 2.17
1798 2077 9.052759 GTAGAACGATGGTCATGGTATAAATTT 57.947 33.333 0.00 0.00 0.00 1.82
1801 2111 7.114866 TGTAGAACGATGGTCATGGTATAAA 57.885 36.000 0.00 0.00 0.00 1.40
1803 2113 6.911250 ATGTAGAACGATGGTCATGGTATA 57.089 37.500 0.00 0.00 0.00 1.47
1813 2123 6.013842 TGCTCTATGTATGTAGAACGATGG 57.986 41.667 0.00 0.00 30.74 3.51
1818 2128 8.455682 GGTAGAGATGCTCTATGTATGTAGAAC 58.544 40.741 7.37 0.00 43.69 3.01
1824 2134 6.127758 GGACTGGTAGAGATGCTCTATGTATG 60.128 46.154 7.37 1.28 43.69 2.39
1829 2139 3.501385 GGGGACTGGTAGAGATGCTCTAT 60.501 52.174 7.37 0.00 43.69 1.98
1840 2150 0.177373 GCGGTTTAGGGGACTGGTAG 59.823 60.000 0.00 0.00 43.88 3.18
1843 2153 0.834612 TATGCGGTTTAGGGGACTGG 59.165 55.000 0.00 0.00 43.88 4.00
1849 2159 7.976734 TGTTTTATGAAAATATGCGGTTTAGGG 59.023 33.333 0.00 0.00 32.22 3.53
1887 2197 7.554959 AGTTAGTGGGAATGACTCTCTTAAA 57.445 36.000 0.00 0.00 0.00 1.52
1901 2211 9.613428 CATGTTGAGATAAATAAGTTAGTGGGA 57.387 33.333 0.00 0.00 0.00 4.37
1922 2232 5.698089 CGGAGATGTGATATACTTGCATGTT 59.302 40.000 10.85 2.16 0.00 2.71
1927 2237 5.769367 TGTACGGAGATGTGATATACTTGC 58.231 41.667 0.00 0.00 0.00 4.01
1935 2245 4.893524 TCCATAGTTGTACGGAGATGTGAT 59.106 41.667 0.00 0.00 0.00 3.06
1944 2254 5.245301 TCTTATCCCATCCATAGTTGTACGG 59.755 44.000 0.00 0.00 0.00 4.02
1946 2256 6.465084 GGTCTTATCCCATCCATAGTTGTAC 58.535 44.000 0.00 0.00 0.00 2.90
1949 2259 4.911390 GGGTCTTATCCCATCCATAGTTG 58.089 47.826 0.00 0.00 46.30 3.16
1961 2271 3.054361 ACATGTTGAGGTGGGTCTTATCC 60.054 47.826 0.00 0.00 0.00 2.59
1966 2276 2.039879 GGTTACATGTTGAGGTGGGTCT 59.960 50.000 2.30 0.00 0.00 3.85
1983 2293 6.378582 GTGATTCTTTTTCAATGCTCGGTTA 58.621 36.000 0.00 0.00 0.00 2.85
1987 2297 4.618489 GTGGTGATTCTTTTTCAATGCTCG 59.382 41.667 0.00 0.00 0.00 5.03
1988 2298 4.925646 GGTGGTGATTCTTTTTCAATGCTC 59.074 41.667 0.00 0.00 0.00 4.26
1989 2299 4.344679 TGGTGGTGATTCTTTTTCAATGCT 59.655 37.500 0.00 0.00 0.00 3.79
1993 2310 5.599732 CATGTGGTGGTGATTCTTTTTCAA 58.400 37.500 0.00 0.00 0.00 2.69
2003 2320 0.178967 TGGTTGCATGTGGTGGTGAT 60.179 50.000 0.00 0.00 0.00 3.06
2103 2420 9.930693 ACCAAAATTTAAAATACATTCGGCTTA 57.069 25.926 0.00 0.00 0.00 3.09
2104 2421 8.840833 ACCAAAATTTAAAATACATTCGGCTT 57.159 26.923 0.00 0.00 0.00 4.35
2105 2422 8.840833 AACCAAAATTTAAAATACATTCGGCT 57.159 26.923 0.00 0.00 0.00 5.52
2106 2423 8.713271 TGAACCAAAATTTAAAATACATTCGGC 58.287 29.630 0.00 0.00 0.00 5.54
2157 2474 8.945481 TTCAATGAGATTTTGTTGTGTGAAAT 57.055 26.923 0.00 0.00 0.00 2.17
2158 2475 8.768957 TTTCAATGAGATTTTGTTGTGTGAAA 57.231 26.923 0.00 0.00 0.00 2.69
2159 2476 8.945481 ATTTCAATGAGATTTTGTTGTGTGAA 57.055 26.923 0.00 0.00 0.00 3.18
2182 2499 9.764363 TGCTTCGAGAATCACTTGTAATATATT 57.236 29.630 2.97 2.97 33.17 1.28
2183 2500 9.764363 TTGCTTCGAGAATCACTTGTAATATAT 57.236 29.630 0.00 0.00 33.17 0.86
2184 2501 9.764363 ATTGCTTCGAGAATCACTTGTAATATA 57.236 29.630 0.00 0.00 33.17 0.86
2185 2502 8.554528 CATTGCTTCGAGAATCACTTGTAATAT 58.445 33.333 0.00 0.00 33.17 1.28
2186 2503 7.465916 GCATTGCTTCGAGAATCACTTGTAATA 60.466 37.037 0.16 0.00 33.17 0.98
2187 2504 6.676456 GCATTGCTTCGAGAATCACTTGTAAT 60.676 38.462 0.16 0.00 33.17 1.89
2188 2505 5.390885 GCATTGCTTCGAGAATCACTTGTAA 60.391 40.000 0.16 0.00 33.17 2.41
2189 2506 4.093408 GCATTGCTTCGAGAATCACTTGTA 59.907 41.667 0.16 0.00 33.17 2.41
2190 2507 3.120060 GCATTGCTTCGAGAATCACTTGT 60.120 43.478 0.16 0.00 33.17 3.16
2191 2508 3.423571 GCATTGCTTCGAGAATCACTTG 58.576 45.455 0.16 0.00 33.17 3.16
2192 2509 2.094894 CGCATTGCTTCGAGAATCACTT 59.905 45.455 7.12 0.00 33.17 3.16
2193 2510 1.662629 CGCATTGCTTCGAGAATCACT 59.337 47.619 7.12 0.00 33.17 3.41
2194 2511 1.394917 ACGCATTGCTTCGAGAATCAC 59.605 47.619 7.12 0.00 33.17 3.06
2195 2512 1.394572 CACGCATTGCTTCGAGAATCA 59.605 47.619 7.12 0.00 33.17 2.57
2196 2513 1.267732 CCACGCATTGCTTCGAGAATC 60.268 52.381 7.12 0.00 0.00 2.52
2197 2514 0.729116 CCACGCATTGCTTCGAGAAT 59.271 50.000 7.12 0.00 0.00 2.40
2198 2515 1.298157 CCCACGCATTGCTTCGAGAA 61.298 55.000 7.12 0.00 0.00 2.87
2199 2516 1.741401 CCCACGCATTGCTTCGAGA 60.741 57.895 7.12 0.00 0.00 4.04
2200 2517 2.753966 CCCCACGCATTGCTTCGAG 61.754 63.158 7.12 0.00 0.00 4.04
2201 2518 2.745884 CCCCACGCATTGCTTCGA 60.746 61.111 7.12 0.00 0.00 3.71
2202 2519 1.302383 TAACCCCACGCATTGCTTCG 61.302 55.000 7.12 0.00 0.00 3.79
2203 2520 0.451783 CTAACCCCACGCATTGCTTC 59.548 55.000 7.12 0.00 0.00 3.86
2204 2521 0.251165 ACTAACCCCACGCATTGCTT 60.251 50.000 7.12 0.00 0.00 3.91
2205 2522 0.251165 AACTAACCCCACGCATTGCT 60.251 50.000 7.12 0.00 0.00 3.91
2206 2523 0.601057 AAACTAACCCCACGCATTGC 59.399 50.000 0.00 0.00 0.00 3.56
2207 2524 1.883275 TCAAACTAACCCCACGCATTG 59.117 47.619 0.00 0.00 0.00 2.82
2208 2525 2.159382 CTCAAACTAACCCCACGCATT 58.841 47.619 0.00 0.00 0.00 3.56
2209 2526 1.821216 CTCAAACTAACCCCACGCAT 58.179 50.000 0.00 0.00 0.00 4.73
2210 2527 0.887387 GCTCAAACTAACCCCACGCA 60.887 55.000 0.00 0.00 0.00 5.24
2211 2528 1.873863 GCTCAAACTAACCCCACGC 59.126 57.895 0.00 0.00 0.00 5.34
2212 2529 0.320073 TCGCTCAAACTAACCCCACG 60.320 55.000 0.00 0.00 0.00 4.94
2213 2530 2.007608 GATCGCTCAAACTAACCCCAC 58.992 52.381 0.00 0.00 0.00 4.61
2214 2531 1.626321 TGATCGCTCAAACTAACCCCA 59.374 47.619 0.00 0.00 0.00 4.96
2215 2532 2.007608 GTGATCGCTCAAACTAACCCC 58.992 52.381 0.00 0.00 31.85 4.95
2216 2533 2.930682 GAGTGATCGCTCAAACTAACCC 59.069 50.000 27.51 0.30 35.67 4.11
2217 2534 3.585862 TGAGTGATCGCTCAAACTAACC 58.414 45.455 31.62 7.58 41.93 2.85
2225 2542 0.317160 ACGGTTTGAGTGATCGCTCA 59.683 50.000 30.44 30.44 43.03 4.26
2226 2543 2.273370 TACGGTTTGAGTGATCGCTC 57.727 50.000 26.14 26.14 36.12 5.03
2227 2544 2.961526 ATACGGTTTGAGTGATCGCT 57.038 45.000 8.94 8.94 0.00 4.93
2228 2545 3.369756 TGAAATACGGTTTGAGTGATCGC 59.630 43.478 0.00 0.00 0.00 4.58
2229 2546 4.387559 TGTGAAATACGGTTTGAGTGATCG 59.612 41.667 0.00 0.00 0.00 3.69
2230 2547 5.856126 TGTGAAATACGGTTTGAGTGATC 57.144 39.130 0.00 0.00 0.00 2.92
2231 2548 6.627395 TTTGTGAAATACGGTTTGAGTGAT 57.373 33.333 0.00 0.00 0.00 3.06
2232 2549 6.438259 TTTTGTGAAATACGGTTTGAGTGA 57.562 33.333 0.00 0.00 0.00 3.41
2233 2550 7.692908 AATTTTGTGAAATACGGTTTGAGTG 57.307 32.000 0.00 0.00 34.44 3.51
2246 2563 9.990360 GGAAGGTTTCCTTATAATTTTGTGAAA 57.010 29.630 0.75 0.00 44.82 2.69
2263 2580 2.882761 ACTGCGTTTTAGGGAAGGTTTC 59.117 45.455 0.00 0.00 0.00 2.78
2264 2581 2.882761 GACTGCGTTTTAGGGAAGGTTT 59.117 45.455 0.00 0.00 0.00 3.27
2265 2582 2.501261 GACTGCGTTTTAGGGAAGGTT 58.499 47.619 0.00 0.00 0.00 3.50
2266 2583 1.607251 CGACTGCGTTTTAGGGAAGGT 60.607 52.381 0.00 0.00 0.00 3.50
2267 2584 1.076332 CGACTGCGTTTTAGGGAAGG 58.924 55.000 0.00 0.00 0.00 3.46
2279 2596 0.038526 AAGTAGGTGGAACGACTGCG 60.039 55.000 0.00 0.00 44.79 5.18
2280 2597 1.798813 CAAAGTAGGTGGAACGACTGC 59.201 52.381 0.00 0.00 38.12 4.40
2281 2598 3.243771 ACTCAAAGTAGGTGGAACGACTG 60.244 47.826 0.00 0.00 38.12 3.51
2282 2599 2.963782 ACTCAAAGTAGGTGGAACGACT 59.036 45.455 0.00 0.00 38.12 4.18
2283 2600 3.315418 GACTCAAAGTAGGTGGAACGAC 58.685 50.000 0.00 0.00 38.12 4.34
2284 2601 2.298163 GGACTCAAAGTAGGTGGAACGA 59.702 50.000 0.00 0.00 38.12 3.85
2285 2602 2.036733 TGGACTCAAAGTAGGTGGAACG 59.963 50.000 0.00 0.00 38.12 3.95
2286 2603 3.764237 TGGACTCAAAGTAGGTGGAAC 57.236 47.619 0.00 0.00 0.00 3.62
2287 2604 3.181448 GGTTGGACTCAAAGTAGGTGGAA 60.181 47.826 0.00 0.00 34.28 3.53
2288 2605 2.370849 GGTTGGACTCAAAGTAGGTGGA 59.629 50.000 0.00 0.00 34.28 4.02
2289 2606 2.105821 TGGTTGGACTCAAAGTAGGTGG 59.894 50.000 0.00 0.00 34.28 4.61
2290 2607 3.139077 GTGGTTGGACTCAAAGTAGGTG 58.861 50.000 0.00 0.00 34.28 4.00
2291 2608 2.775384 TGTGGTTGGACTCAAAGTAGGT 59.225 45.455 0.00 0.00 34.28 3.08
2292 2609 3.485463 TGTGGTTGGACTCAAAGTAGG 57.515 47.619 0.00 0.00 34.28 3.18
2293 2610 5.828299 TTTTGTGGTTGGACTCAAAGTAG 57.172 39.130 0.00 0.00 34.28 2.57
2294 2611 6.202516 CTTTTTGTGGTTGGACTCAAAGTA 57.797 37.500 0.00 0.00 34.28 2.24
2295 2612 5.072040 CTTTTTGTGGTTGGACTCAAAGT 57.928 39.130 0.00 0.00 34.28 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.