Multiple sequence alignment - TraesCS1D01G267600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G267600 chr1D 100.000 9500 0 0 1 9500 363597267 363587768 0.000000e+00 17544.0
1 TraesCS1D01G267600 chr1D 85.542 249 22 9 6531 6769 332704386 332704142 2.050000e-61 248.0
2 TraesCS1D01G267600 chr1D 100.000 38 0 0 2983 3020 128978371 128978334 4.760000e-08 71.3
3 TraesCS1D01G267600 chr1B 94.388 4954 186 40 4335 9257 486835629 486830737 0.000000e+00 7524.0
4 TraesCS1D01G267600 chr1B 89.753 1337 92 16 1 1313 486840613 486839298 0.000000e+00 1668.0
5 TraesCS1D01G267600 chr1B 91.863 934 32 16 3409 4342 486836682 486835793 0.000000e+00 1264.0
6 TraesCS1D01G267600 chr1B 87.060 881 55 26 1866 2713 486838675 486837821 0.000000e+00 941.0
7 TraesCS1D01G267600 chr1B 92.237 541 26 6 1304 1828 486839225 486838685 0.000000e+00 752.0
8 TraesCS1D01G267600 chr1B 87.281 228 13 8 2758 2975 486837328 486837107 7.370000e-61 246.0
9 TraesCS1D01G267600 chr1B 78.032 437 41 24 3015 3422 486837112 486836702 3.450000e-54 224.0
10 TraesCS1D01G267600 chr1B 88.966 145 12 1 6536 6676 447585760 447585616 9.810000e-40 176.0
11 TraesCS1D01G267600 chr1B 78.814 236 42 7 9272 9500 418061007 418061241 1.650000e-32 152.0
12 TraesCS1D01G267600 chr1B 90.278 72 4 1 6687 6758 447585444 447585376 3.650000e-14 91.6
13 TraesCS1D01G267600 chr1A 95.737 3964 142 12 4710 8667 462746507 462742565 0.000000e+00 6359.0
14 TraesCS1D01G267600 chr1A 85.766 1665 134 48 1 1616 462751339 462749729 0.000000e+00 1666.0
15 TraesCS1D01G267600 chr1A 90.909 1122 59 16 3421 4528 462747922 462746830 0.000000e+00 1467.0
16 TraesCS1D01G267600 chr1A 86.977 1052 76 25 1960 2975 462749386 462748360 0.000000e+00 1127.0
17 TraesCS1D01G267600 chr1A 81.798 456 42 15 8674 9119 462728290 462727866 2.540000e-90 344.0
18 TraesCS1D01G267600 chr1A 77.855 429 39 24 3015 3422 462748365 462747972 2.080000e-51 215.0
19 TraesCS1D01G267600 chr1A 91.892 74 6 0 6552 6625 430344091 430344018 4.690000e-18 104.0
20 TraesCS1D01G267600 chr3D 74.157 534 112 17 5154 5682 496106791 496107303 2.090000e-46 198.0
21 TraesCS1D01G267600 chr3D 90.196 51 2 3 2971 3020 47799617 47799569 7.960000e-06 63.9
22 TraesCS1D01G267600 chr3A 73.256 688 125 43 5209 5852 635338841 635339513 7.530000e-46 196.0
23 TraesCS1D01G267600 chr7B 80.786 229 38 4 9276 9500 131949159 131949385 3.530000e-39 174.0
24 TraesCS1D01G267600 chr7A 80.889 225 38 3 9280 9500 3024717 3024940 1.270000e-38 172.0
25 TraesCS1D01G267600 chr3B 81.279 219 35 3 9286 9498 712574716 712574498 1.270000e-38 172.0
26 TraesCS1D01G267600 chr7D 80.531 226 36 6 9280 9500 28437364 28437586 5.900000e-37 167.0
27 TraesCS1D01G267600 chr7D 95.349 43 0 2 2971 3012 611742441 611742482 6.160000e-07 67.6
28 TraesCS1D01G267600 chr5B 80.631 222 38 3 9283 9500 562217005 562216785 5.900000e-37 167.0
29 TraesCS1D01G267600 chr5A 80.088 226 38 5 9280 9500 523930327 523930550 2.750000e-35 161.0
30 TraesCS1D01G267600 chr6B 79.399 233 41 6 9273 9500 603903843 603903613 3.550000e-34 158.0
31 TraesCS1D01G267600 chr2D 79.386 228 41 5 9276 9500 432765789 432765565 1.280000e-33 156.0
32 TraesCS1D01G267600 chr4A 92.857 56 2 2 2967 3021 552889912 552889966 7.910000e-11 80.5
33 TraesCS1D01G267600 chr4A 85.246 61 4 5 2971 3030 81278476 81278532 3.710000e-04 58.4
34 TraesCS1D01G267600 chrUn 86.154 65 4 3 2948 3012 29722150 29722091 2.210000e-06 65.8
35 TraesCS1D01G267600 chr4D 88.679 53 6 0 2960 3012 498762401 498762453 2.210000e-06 65.8
36 TraesCS1D01G267600 chr2A 85.938 64 5 4 2957 3019 755928723 755928663 2.210000e-06 65.8
37 TraesCS1D01G267600 chr2A 88.462 52 5 1 2962 3012 38968406 38968457 2.860000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G267600 chr1D 363587768 363597267 9499 True 17544.000000 17544 100.000000 1 9500 1 chr1D.!!$R3 9499
1 TraesCS1D01G267600 chr1B 486830737 486840613 9876 True 1802.714286 7524 88.659143 1 9257 7 chr1B.!!$R2 9256
2 TraesCS1D01G267600 chr1A 462742565 462751339 8774 True 2166.800000 6359 87.448800 1 8667 5 chr1A.!!$R3 8666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.035458 CCTTGTTTCTCCGCTCCTGT 59.965 55.000 0.00 0.00 0.00 4.00 F
1308 1339 0.032017 AGGATCGCCTACCTGGTTCT 60.032 55.000 3.84 0.00 44.74 3.01 F
1310 1341 0.105039 GATCGCCTACCTGGTTCTGG 59.895 60.000 3.84 6.75 38.35 3.86 F
3063 3797 0.251354 CGATATGGAGGCCATGAGGG 59.749 60.000 5.01 0.00 44.84 4.30 F
3068 3802 0.259647 TGGAGGCCATGAGGGAATTG 59.740 55.000 5.01 0.00 40.01 2.32 F
3272 4016 0.260230 TCTTTTGAACCCCTGGTGCA 59.740 50.000 0.00 0.00 39.94 4.57 F
5070 6260 0.849094 ACCCACAAGGAGGCCCAATA 60.849 55.000 0.00 0.00 39.89 1.90 F
5073 6263 2.626683 CCCACAAGGAGGCCCAATAATT 60.627 50.000 0.00 0.00 38.24 1.40 F
6335 7528 1.243902 GACCCAGCCGTTTTCATCAA 58.756 50.000 0.00 0.00 0.00 2.57 F
7892 9092 1.141858 CCTCTCAATCCCTGTAAGCCC 59.858 57.143 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1348 0.038166 ACAAGGTGGCGTGGATTGAT 59.962 50.000 0.00 0.00 0.00 2.57 R
2645 2912 0.240145 TGGTCATGACTCACGACGTC 59.760 55.000 24.50 5.18 0.00 4.34 R
3253 3997 0.260230 TGCACCAGGGGTTCAAAAGA 59.740 50.000 0.00 0.00 31.02 2.52 R
5024 6214 1.135721 GCCCTTCCTGTTTCATCATGC 59.864 52.381 0.00 0.00 0.00 4.06 R
5103 6293 6.913873 TGAAGAACTTAACACAACCACTAC 57.086 37.500 0.00 0.00 0.00 2.73 R
5205 6395 1.977594 CTGCCCAACGGACATAACGC 61.978 60.000 0.00 0.00 34.00 4.84 R
6213 7406 0.758685 TTGGGTGCCAGTTGGAAAGG 60.759 55.000 1.45 0.00 37.39 3.11 R
6718 7911 2.636768 TACATGTGCTCGTGACTCAG 57.363 50.000 14.62 0.00 34.90 3.35 R
8204 9405 0.517316 AACTCGCGAACTCAATTGCC 59.483 50.000 11.33 0.00 0.00 4.52 R
9331 10536 0.027455 CAGCGCGTCACTTTTCACAA 59.973 50.000 8.43 0.00 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.078143 GAGCCGAGCATCCCTTGTT 60.078 57.895 0.00 0.00 0.00 2.83
26 27 1.373570 CGAGCATCCCTTGTTTCTCC 58.626 55.000 0.00 0.00 0.00 3.71
30 31 1.373570 CATCCCTTGTTTCTCCGCTC 58.626 55.000 0.00 0.00 0.00 5.03
34 35 0.035458 CCTTGTTTCTCCGCTCCTGT 59.965 55.000 0.00 0.00 0.00 4.00
56 57 1.236616 CCATGTTCACGCCTTCTGCA 61.237 55.000 0.00 0.00 41.33 4.41
60 61 0.874390 GTTCACGCCTTCTGCATTCA 59.126 50.000 0.00 0.00 41.33 2.57
63 64 1.089112 CACGCCTTCTGCATTCATGA 58.911 50.000 0.00 0.00 41.33 3.07
68 69 2.426024 GCCTTCTGCATTCATGACATGT 59.574 45.455 14.98 0.00 40.77 3.21
77 78 6.151004 TGCATTCATGACATGTGTTTTGTAG 58.849 36.000 14.98 0.00 0.00 2.74
103 104 4.688413 CCTCTTGTGCTCACTCTTAACTTC 59.312 45.833 1.47 0.00 0.00 3.01
133 135 6.449635 AATGGAATGATACGCAAAGCTTTA 57.550 33.333 12.25 0.00 0.00 1.85
135 137 4.697828 TGGAATGATACGCAAAGCTTTACA 59.302 37.500 12.25 6.17 0.00 2.41
175 181 0.738389 ATTCCGGCTAAATTGTGCGG 59.262 50.000 0.00 0.00 0.00 5.69
221 227 1.588674 GTTCCACACCGATCACACAA 58.411 50.000 0.00 0.00 0.00 3.33
233 239 5.240623 ACCGATCACACAAAAGCAAGATAAA 59.759 36.000 0.00 0.00 0.00 1.40
267 273 2.508743 CACCTTGCGTGCACATTTG 58.491 52.632 18.64 0.81 35.18 2.32
300 306 0.782384 CAGCTTGTCACGTACCGTTC 59.218 55.000 0.00 0.00 38.32 3.95
301 307 0.672342 AGCTTGTCACGTACCGTTCT 59.328 50.000 0.00 0.00 38.32 3.01
302 308 1.058404 GCTTGTCACGTACCGTTCTC 58.942 55.000 0.00 0.00 38.32 2.87
303 309 1.335689 GCTTGTCACGTACCGTTCTCT 60.336 52.381 0.00 0.00 38.32 3.10
304 310 2.316792 CTTGTCACGTACCGTTCTCTG 58.683 52.381 0.00 0.00 38.32 3.35
391 397 2.255252 GGCATGACACGGCACAAC 59.745 61.111 0.00 0.00 0.00 3.32
392 398 2.260869 GGCATGACACGGCACAACT 61.261 57.895 0.00 0.00 0.00 3.16
393 399 1.207593 GCATGACACGGCACAACTC 59.792 57.895 0.00 0.00 0.00 3.01
394 400 1.230635 GCATGACACGGCACAACTCT 61.231 55.000 0.00 0.00 0.00 3.24
395 401 0.792640 CATGACACGGCACAACTCTC 59.207 55.000 0.00 0.00 0.00 3.20
396 402 0.392706 ATGACACGGCACAACTCTCA 59.607 50.000 0.00 0.00 0.00 3.27
397 403 0.392706 TGACACGGCACAACTCTCAT 59.607 50.000 0.00 0.00 0.00 2.90
520 533 1.134560 CGACCTACTGTCCTGGTAAGC 59.865 57.143 0.00 0.00 41.18 3.09
567 580 9.606631 AAAACTTGCATGGTAATTAAACTTTGA 57.393 25.926 4.44 0.00 0.00 2.69
624 637 3.439293 CTGTACTACTGGATGCAAGTCG 58.561 50.000 0.00 0.00 0.00 4.18
625 638 2.165641 TGTACTACTGGATGCAAGTCGG 59.834 50.000 0.00 0.00 0.00 4.79
633 646 4.336433 ACTGGATGCAAGTCGGAAATAATG 59.664 41.667 0.00 0.00 0.00 1.90
659 672 3.932710 CTGTGAACTGTAACATACGGCAT 59.067 43.478 0.00 0.00 38.64 4.40
879 895 3.005155 CCCAAGAAACAAGCAAAGAGAGG 59.995 47.826 0.00 0.00 0.00 3.69
954 973 2.060050 ATACACTCTCTCGGGTCCTG 57.940 55.000 0.00 0.00 0.00 3.86
974 993 2.253513 GCGTTTTGCCTGGCTAAGA 58.746 52.632 21.03 6.90 37.76 2.10
992 1011 1.761784 AGAGAGCTGATACTGCAAGGG 59.238 52.381 0.00 0.00 39.30 3.95
1007 1026 3.397482 GCAAGGGCAGAGATATGTACAG 58.603 50.000 0.33 0.00 40.72 2.74
1008 1027 3.805108 GCAAGGGCAGAGATATGTACAGG 60.805 52.174 0.33 0.00 40.72 4.00
1011 1030 2.300437 GGGCAGAGATATGTACAGGGTC 59.700 54.545 0.33 0.00 0.00 4.46
1013 1032 2.885266 GCAGAGATATGTACAGGGTCGA 59.115 50.000 0.33 0.00 0.00 4.20
1014 1033 3.508012 GCAGAGATATGTACAGGGTCGAT 59.492 47.826 0.33 0.00 0.00 3.59
1019 1038 2.585247 GTACAGGGTCGATGCGGC 60.585 66.667 0.00 0.00 0.00 6.53
1051 1070 1.445066 CTCATCGTGCTGACAGCGT 60.445 57.895 22.00 5.85 46.26 5.07
1052 1071 1.681025 CTCATCGTGCTGACAGCGTG 61.681 60.000 22.00 16.37 46.26 5.34
1053 1072 3.114616 ATCGTGCTGACAGCGTGC 61.115 61.111 22.00 13.47 46.26 5.34
1117 1148 1.149782 AGGAGGAGGAGAGGTCACCA 61.150 60.000 0.00 0.00 0.00 4.17
1279 1310 6.205464 CCTTCTTGACTGAGTTTTAGCAATCA 59.795 38.462 0.00 0.00 0.00 2.57
1281 1312 7.750229 TCTTGACTGAGTTTTAGCAATCAAT 57.250 32.000 0.00 0.00 0.00 2.57
1295 1326 6.492007 AGCAATCAATTTAGCATAGGATCG 57.508 37.500 0.00 0.00 0.00 3.69
1296 1327 5.091431 GCAATCAATTTAGCATAGGATCGC 58.909 41.667 0.00 0.00 0.00 4.58
1297 1328 5.634896 CAATCAATTTAGCATAGGATCGCC 58.365 41.667 0.00 0.00 0.00 5.54
1306 1337 3.939710 TAGGATCGCCTACCTGGTT 57.060 52.632 3.84 0.00 44.74 3.67
1307 1338 1.700955 TAGGATCGCCTACCTGGTTC 58.299 55.000 3.84 0.00 44.74 3.62
1308 1339 0.032017 AGGATCGCCTACCTGGTTCT 60.032 55.000 3.84 0.00 44.74 3.01
1310 1341 0.105039 GATCGCCTACCTGGTTCTGG 59.895 60.000 3.84 6.75 38.35 3.86
1314 1345 0.960861 GCCTACCTGGTTCTGGTTGC 60.961 60.000 3.84 3.03 36.99 4.17
1315 1346 0.322546 CCTACCTGGTTCTGGTTGCC 60.323 60.000 3.84 0.00 36.99 4.52
1316 1347 0.400213 CTACCTGGTTCTGGTTGCCA 59.600 55.000 3.84 0.00 36.99 4.92
1317 1348 0.847373 TACCTGGTTCTGGTTGCCAA 59.153 50.000 3.84 0.00 36.99 4.52
1319 1350 0.890683 CCTGGTTCTGGTTGCCAATC 59.109 55.000 0.00 0.00 30.80 2.67
1320 1351 1.619654 CTGGTTCTGGTTGCCAATCA 58.380 50.000 0.00 0.00 30.80 2.57
1321 1352 1.962807 CTGGTTCTGGTTGCCAATCAA 59.037 47.619 0.00 0.00 30.80 2.57
1322 1353 2.564062 CTGGTTCTGGTTGCCAATCAAT 59.436 45.455 0.00 0.00 36.99 2.57
1353 1477 0.527600 TGTGCTAATGCGACGCCTAG 60.528 55.000 18.69 17.88 43.34 3.02
1354 1478 1.591594 TGCTAATGCGACGCCTAGC 60.592 57.895 29.84 29.84 43.34 3.42
1355 1479 1.300233 GCTAATGCGACGCCTAGCT 60.300 57.895 29.51 11.06 36.60 3.32
1356 1480 1.552348 GCTAATGCGACGCCTAGCTG 61.552 60.000 29.51 14.01 36.60 4.24
1357 1481 0.941463 CTAATGCGACGCCTAGCTGG 60.941 60.000 18.69 0.00 39.35 4.85
1532 1665 4.262164 GCAAAGTGGGAAACTGATGAACAT 60.262 41.667 0.00 0.00 39.81 2.71
1535 1668 4.082125 AGTGGGAAACTGATGAACATTCC 58.918 43.478 0.00 0.00 37.88 3.01
1632 1776 2.285977 GCCAGTACTATTTTGGTCCGG 58.714 52.381 0.00 0.00 34.43 5.14
1649 1793 4.939439 GGTCCGGTACTGATAACAAACAAT 59.061 41.667 2.31 0.00 0.00 2.71
1697 1841 2.861935 GTGCGTGCACCGTTAATATACT 59.138 45.455 13.90 0.00 40.79 2.12
1745 1891 3.107868 CGTCGTGTACGTAACTGATGA 57.892 47.619 0.00 0.00 46.72 2.92
1778 1950 4.145365 TCCGTAATTCCATGGACGAATT 57.855 40.909 21.60 17.44 41.58 2.17
1798 1970 2.736144 AACTGAACGCCTCATACGAA 57.264 45.000 0.00 0.00 32.14 3.85
1833 2018 4.129737 CATGCACAGCCAGCCAGC 62.130 66.667 0.00 0.00 0.00 4.85
1897 2082 0.313987 TGCGTATAGGAGCATGTCGG 59.686 55.000 0.00 0.00 38.59 4.79
1903 2088 1.048160 TAGGAGCATGTCGGCCATCA 61.048 55.000 2.24 0.50 0.00 3.07
1904 2089 1.451927 GGAGCATGTCGGCCATCAA 60.452 57.895 2.24 0.00 0.00 2.57
1906 2091 1.718757 GAGCATGTCGGCCATCAACC 61.719 60.000 2.24 0.00 0.00 3.77
1907 2092 1.750399 GCATGTCGGCCATCAACCT 60.750 57.895 2.24 0.00 0.00 3.50
1908 2093 1.996786 GCATGTCGGCCATCAACCTG 61.997 60.000 2.24 0.00 0.00 4.00
1909 2094 0.392863 CATGTCGGCCATCAACCTGA 60.393 55.000 2.24 0.00 0.00 3.86
1926 2113 2.224378 CCTGACAACCTCTCTGCTCAAA 60.224 50.000 0.00 0.00 0.00 2.69
1947 2134 3.226346 AGCTTTACTACGAACGCATCA 57.774 42.857 0.00 0.00 0.00 3.07
1948 2135 3.581755 AGCTTTACTACGAACGCATCAA 58.418 40.909 0.00 0.00 0.00 2.57
1949 2136 3.367025 AGCTTTACTACGAACGCATCAAC 59.633 43.478 0.00 0.00 0.00 3.18
1951 2138 3.581024 TTACTACGAACGCATCAACCT 57.419 42.857 0.00 0.00 0.00 3.50
1952 2139 1.992170 ACTACGAACGCATCAACCTC 58.008 50.000 0.00 0.00 0.00 3.85
2016 2225 4.049186 TCTTGTAGAAGCTGTCGTTCAAC 58.951 43.478 0.00 0.00 0.00 3.18
2032 2241 9.214957 TGTCGTTCAACAATAATCTTGTAGAAT 57.785 29.630 0.00 0.00 31.50 2.40
2038 2247 9.383519 TCAACAATAATCTTGTAGAATCTGTCC 57.616 33.333 0.00 0.00 31.50 4.02
2047 2256 7.155328 TCTTGTAGAATCTGTCCTTCTGAAAC 58.845 38.462 0.00 0.00 34.81 2.78
2048 2257 6.419484 TGTAGAATCTGTCCTTCTGAAACA 57.581 37.500 0.00 0.00 34.81 2.83
2061 2270 7.756722 GTCCTTCTGAAACAATGACCATTAATG 59.243 37.037 8.58 8.58 0.00 1.90
2201 2450 8.432359 GGAATTAATTGTCAAAATCACGTTTCC 58.568 33.333 5.17 0.00 0.00 3.13
2213 2462 5.808042 ATCACGTTTCCAAGATCATTCTG 57.192 39.130 0.00 0.00 30.72 3.02
2259 2508 7.264373 AGAGGACCGAATAAAGCAATTTATG 57.736 36.000 0.00 0.00 0.00 1.90
2261 2510 7.012421 AGAGGACCGAATAAAGCAATTTATGTC 59.988 37.037 0.00 0.00 0.00 3.06
2410 2668 4.481368 ACTCGTGCATGGGTATTTCTAA 57.519 40.909 10.48 0.00 0.00 2.10
2422 2680 9.034544 CATGGGTATTTCTAAAAGCAATTAAGC 57.965 33.333 0.00 0.00 0.00 3.09
2451 2709 9.976511 TCATTACCGATTTACTATACTCCAAAG 57.023 33.333 0.00 0.00 0.00 2.77
2620 2887 5.860648 AGGAGAACCCTCAAGGAAAATTA 57.139 39.130 0.00 0.00 43.31 1.40
2634 2901 4.889995 AGGAAAATTAGCCAACTATCAGCC 59.110 41.667 0.01 0.00 0.00 4.85
2639 2906 2.182842 GCCAACTATCAGCCAGCGG 61.183 63.158 0.00 0.00 0.00 5.52
2706 2979 3.950794 ATGGCGTGCGTGGGTACTG 62.951 63.158 0.00 0.00 0.00 2.74
2745 3018 4.179599 GGGGAGGGGAGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
2746 3019 4.179599 GGGAGGGGAGGGAGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
2747 3020 4.890306 GGAGGGGAGGGAGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
2765 3486 4.426313 GGGGCGGGAAAGGAGGTG 62.426 72.222 0.00 0.00 0.00 4.00
2884 3612 2.042433 AGCAGGGCTTTGGGTACATTTA 59.958 45.455 0.00 0.00 33.89 1.40
2894 3623 5.385509 TTGGGTACATTTAGCAAAGCTTC 57.614 39.130 0.00 0.00 40.44 3.86
2910 3639 1.957113 GCTTCCACCCTCCTGATTTGG 60.957 57.143 0.00 0.00 0.00 3.28
2924 3653 5.249622 TCCTGATTTGGTCATGGTGTAGTTA 59.750 40.000 0.00 0.00 35.97 2.24
2939 3670 6.108015 GGTGTAGTTATTCAATGGTAACGGA 58.892 40.000 0.00 0.00 42.51 4.69
2955 3686 2.973945 ACGGAAGTCCAATTGTCTAGC 58.026 47.619 4.43 0.00 44.19 3.42
2956 3687 1.927174 CGGAAGTCCAATTGTCTAGCG 59.073 52.381 4.43 0.00 35.14 4.26
2958 3689 2.673368 GGAAGTCCAATTGTCTAGCGTG 59.327 50.000 4.43 0.00 35.64 5.34
2960 3691 2.688507 AGTCCAATTGTCTAGCGTGTG 58.311 47.619 4.43 0.00 0.00 3.82
2964 3695 3.880490 TCCAATTGTCTAGCGTGTGTTTT 59.120 39.130 4.43 0.00 0.00 2.43
2965 3696 4.336993 TCCAATTGTCTAGCGTGTGTTTTT 59.663 37.500 4.43 0.00 0.00 1.94
2986 3717 7.894376 TTTTTACGGTACTCCTGACATAAAG 57.106 36.000 0.00 0.00 0.00 1.85
2987 3718 6.839124 TTTACGGTACTCCTGACATAAAGA 57.161 37.500 0.00 0.00 0.00 2.52
2988 3719 6.839124 TTACGGTACTCCTGACATAAAGAA 57.161 37.500 0.00 0.00 0.00 2.52
2989 3720 5.733620 ACGGTACTCCTGACATAAAGAAA 57.266 39.130 0.00 0.00 0.00 2.52
2990 3721 6.295719 ACGGTACTCCTGACATAAAGAAAT 57.704 37.500 0.00 0.00 0.00 2.17
2991 3722 7.414222 ACGGTACTCCTGACATAAAGAAATA 57.586 36.000 0.00 0.00 0.00 1.40
2992 3723 8.019656 ACGGTACTCCTGACATAAAGAAATAT 57.980 34.615 0.00 0.00 0.00 1.28
2993 3724 9.139734 ACGGTACTCCTGACATAAAGAAATATA 57.860 33.333 0.00 0.00 0.00 0.86
2994 3725 9.976511 CGGTACTCCTGACATAAAGAAATATAA 57.023 33.333 0.00 0.00 0.00 0.98
2998 3729 9.771534 ACTCCTGACATAAAGAAATATAAGAGC 57.228 33.333 0.00 0.00 0.00 4.09
2999 3730 8.818141 TCCTGACATAAAGAAATATAAGAGCG 57.182 34.615 0.00 0.00 0.00 5.03
3000 3731 8.421784 TCCTGACATAAAGAAATATAAGAGCGT 58.578 33.333 0.00 0.00 0.00 5.07
3001 3732 9.046296 CCTGACATAAAGAAATATAAGAGCGTT 57.954 33.333 0.00 0.00 0.00 4.84
3013 3744 9.915629 AAATATAAGAGCGTTTAGATCACTAGG 57.084 33.333 0.00 0.00 37.82 3.02
3031 3765 5.064962 CACTAGGAGTACTTCGGTTGTCTAG 59.935 48.000 0.00 0.00 0.00 2.43
3055 3789 2.325583 TGTTTGACCGATATGGAGGC 57.674 50.000 0.00 0.00 42.00 4.70
3063 3797 0.251354 CGATATGGAGGCCATGAGGG 59.749 60.000 5.01 0.00 44.84 4.30
3064 3798 1.661463 GATATGGAGGCCATGAGGGA 58.339 55.000 5.01 0.00 44.84 4.20
3065 3799 1.988107 GATATGGAGGCCATGAGGGAA 59.012 52.381 5.01 0.00 44.84 3.97
3066 3800 2.138535 TATGGAGGCCATGAGGGAAT 57.861 50.000 5.01 0.00 44.84 3.01
3067 3801 1.238615 ATGGAGGCCATGAGGGAATT 58.761 50.000 5.01 0.00 43.39 2.17
3068 3802 0.259647 TGGAGGCCATGAGGGAATTG 59.740 55.000 5.01 0.00 40.01 2.32
3069 3803 1.111715 GGAGGCCATGAGGGAATTGC 61.112 60.000 5.01 0.00 40.01 3.56
3071 3805 0.263765 AGGCCATGAGGGAATTGCAT 59.736 50.000 5.01 0.00 40.01 3.96
3138 3877 2.165437 GAGAGGATCAGCTCTCGTTTGT 59.835 50.000 11.71 0.00 37.05 2.83
3172 3911 6.011096 TCCTATAGAATTTGAACCCCTGGTTT 60.011 38.462 0.00 0.00 46.95 3.27
3173 3912 6.667848 CCTATAGAATTTGAACCCCTGGTTTT 59.332 38.462 0.00 0.00 46.95 2.43
3174 3913 7.180229 CCTATAGAATTTGAACCCCTGGTTTTT 59.820 37.037 0.00 0.00 46.95 1.94
3245 3989 5.708736 AAAGAATTTGAACCCCTGGTTTT 57.291 34.783 0.00 0.00 46.95 2.43
3267 4011 5.467035 TTTTAGCATCTTTTGAACCCCTG 57.533 39.130 0.00 0.00 0.00 4.45
3268 4012 1.928868 AGCATCTTTTGAACCCCTGG 58.071 50.000 0.00 0.00 0.00 4.45
3269 4013 1.147817 AGCATCTTTTGAACCCCTGGT 59.852 47.619 0.00 0.00 37.65 4.00
3270 4014 1.273327 GCATCTTTTGAACCCCTGGTG 59.727 52.381 0.00 0.00 35.34 4.17
3271 4015 1.273327 CATCTTTTGAACCCCTGGTGC 59.727 52.381 0.00 0.00 35.34 5.01
3272 4016 0.260230 TCTTTTGAACCCCTGGTGCA 59.740 50.000 0.00 0.00 39.94 4.57
3275 4019 4.947147 TGAACCCCTGGTGCACGC 62.947 66.667 11.45 4.50 36.10 5.34
3304 4048 3.884091 CAGGTCAGTAGCCTAAGTACGAT 59.116 47.826 0.00 0.00 34.45 3.73
3338 4082 3.639094 CCATCTCGGTTCAGAGTTAGGAT 59.361 47.826 0.61 0.00 39.21 3.24
3349 4109 7.494298 GGTTCAGAGTTAGGATTTCTTCTCATC 59.506 40.741 0.00 0.00 32.05 2.92
3363 4123 1.003580 TCTCATCGGCTTGCCTTTCTT 59.996 47.619 10.12 0.00 0.00 2.52
3366 4126 0.967380 ATCGGCTTGCCTTTCTTGGG 60.967 55.000 10.12 0.00 0.00 4.12
3411 4171 2.825861 TAAACACCACGAGGACCTTC 57.174 50.000 5.68 0.00 38.69 3.46
3412 4172 1.129058 AAACACCACGAGGACCTTCT 58.871 50.000 5.68 0.00 38.69 2.85
3447 4258 1.738099 GCGCACGTCATCAGGAGTT 60.738 57.895 0.30 0.00 0.00 3.01
3454 4265 2.834549 ACGTCATCAGGAGTTTCAGGAT 59.165 45.455 0.00 0.00 0.00 3.24
3528 4339 6.932356 TTTGGCAGCTAGAGAATTAAGATG 57.068 37.500 0.00 0.00 0.00 2.90
3624 4445 3.244353 CCTCCGGCTGTCATTTCATCTAT 60.244 47.826 0.00 0.00 0.00 1.98
3661 4482 6.072728 TCAGCAAAACATTACTCGCTTTACAT 60.073 34.615 0.00 0.00 0.00 2.29
3675 4507 6.597562 TCGCTTTACATGTAATAATTCCCCT 58.402 36.000 18.69 0.00 0.00 4.79
3676 4508 7.057894 TCGCTTTACATGTAATAATTCCCCTT 58.942 34.615 18.69 0.00 0.00 3.95
3677 4509 7.012894 TCGCTTTACATGTAATAATTCCCCTTG 59.987 37.037 18.69 0.68 0.00 3.61
3678 4510 7.433680 GCTTTACATGTAATAATTCCCCTTGG 58.566 38.462 18.69 0.00 0.00 3.61
3679 4511 7.069455 GCTTTACATGTAATAATTCCCCTTGGT 59.931 37.037 18.69 0.00 0.00 3.67
3680 4512 9.635404 CTTTACATGTAATAATTCCCCTTGGTA 57.365 33.333 18.69 0.00 0.00 3.25
3681 4513 9.992442 TTTACATGTAATAATTCCCCTTGGTAA 57.008 29.630 18.69 0.00 0.00 2.85
3682 4514 9.992442 TTACATGTAATAATTCCCCTTGGTAAA 57.008 29.630 14.35 0.00 0.00 2.01
3683 4515 8.301252 ACATGTAATAATTCCCCTTGGTAAAC 57.699 34.615 0.00 0.00 0.00 2.01
3684 4516 7.343574 ACATGTAATAATTCCCCTTGGTAAACC 59.656 37.037 0.00 0.00 0.00 3.27
3701 4533 5.571357 GGTAAACCAATATCAAACTTGCACG 59.429 40.000 0.00 0.00 35.64 5.34
3711 4543 3.129638 TCAAACTTGCACGGCTAAAAAGT 59.870 39.130 0.00 0.00 32.60 2.66
3799 4632 1.619977 GCACAAGTAGAGGGAGGGAGA 60.620 57.143 0.00 0.00 0.00 3.71
3818 4651 6.954684 AGGGAGACAACTCTTCAAAGTATCTA 59.045 38.462 0.00 0.00 42.28 1.98
3851 4684 1.418334 ATGTGGATCCTCTTCCGGAG 58.582 55.000 14.23 0.00 38.74 4.63
4094 4927 1.203013 GGGCCAGGTAGGTGTCTTTTT 60.203 52.381 4.39 0.00 40.61 1.94
4105 4938 7.979537 AGGTAGGTGTCTTTTTCAATTCAAAAC 59.020 33.333 0.00 0.00 0.00 2.43
4393 5397 3.706594 GGATACCTTCATCTGACTGTCCA 59.293 47.826 5.17 0.00 0.00 4.02
4394 5398 4.346418 GGATACCTTCATCTGACTGTCCAT 59.654 45.833 5.17 0.00 0.00 3.41
4478 5501 9.877178 CACTCCTAATCACTTCTATGTTAACTT 57.123 33.333 7.22 3.03 0.00 2.66
4485 5508 6.472887 TCACTTCTATGTTAACTTCCCCTTG 58.527 40.000 7.22 0.00 0.00 3.61
4504 5527 5.483583 CCCTTGATTACTCCCCAATTTTCAA 59.516 40.000 0.00 0.00 0.00 2.69
4512 5535 9.635404 ATTACTCCCCAATTTTCAATATCGTTA 57.365 29.630 0.00 0.00 0.00 3.18
4517 5540 6.238925 CCCCAATTTTCAATATCGTTACCTCC 60.239 42.308 0.00 0.00 0.00 4.30
4528 5551 4.546829 TCGTTACCTCCTAGTTGCAAAT 57.453 40.909 4.23 4.23 0.00 2.32
4529 5552 4.901868 TCGTTACCTCCTAGTTGCAAATT 58.098 39.130 4.05 0.00 0.00 1.82
4530 5553 5.310451 TCGTTACCTCCTAGTTGCAAATTT 58.690 37.500 4.05 0.00 0.00 1.82
4531 5554 6.465948 TCGTTACCTCCTAGTTGCAAATTTA 58.534 36.000 4.05 0.00 0.00 1.40
4532 5555 7.107542 TCGTTACCTCCTAGTTGCAAATTTAT 58.892 34.615 4.05 0.00 0.00 1.40
4533 5556 7.065324 TCGTTACCTCCTAGTTGCAAATTTATG 59.935 37.037 4.05 0.00 0.00 1.90
4535 5558 5.826643 ACCTCCTAGTTGCAAATTTATGGA 58.173 37.500 4.05 7.47 0.00 3.41
4537 5560 6.547510 ACCTCCTAGTTGCAAATTTATGGATC 59.452 38.462 4.05 0.00 0.00 3.36
4538 5561 6.547141 CCTCCTAGTTGCAAATTTATGGATCA 59.453 38.462 4.05 0.00 0.00 2.92
4539 5562 7.333528 TCCTAGTTGCAAATTTATGGATCAC 57.666 36.000 4.05 0.00 0.00 3.06
4540 5563 6.889177 TCCTAGTTGCAAATTTATGGATCACA 59.111 34.615 4.05 0.00 0.00 3.58
4541 5564 7.395772 TCCTAGTTGCAAATTTATGGATCACAA 59.604 33.333 4.05 0.00 0.00 3.33
4542 5565 8.199449 CCTAGTTGCAAATTTATGGATCACAAT 58.801 33.333 4.05 0.00 0.00 2.71
4543 5566 9.590451 CTAGTTGCAAATTTATGGATCACAATT 57.410 29.630 4.05 0.00 0.00 2.32
4544 5567 8.851541 AGTTGCAAATTTATGGATCACAATTT 57.148 26.923 0.00 0.00 30.56 1.82
4545 5568 9.941325 AGTTGCAAATTTATGGATCACAATTTA 57.059 25.926 0.00 0.00 29.64 1.40
4547 5570 8.422973 TGCAAATTTATGGATCACAATTTAGC 57.577 30.769 0.00 6.67 29.64 3.09
4548 5571 7.222417 TGCAAATTTATGGATCACAATTTAGCG 59.778 33.333 0.00 0.00 31.94 4.26
4549 5572 7.558137 CAAATTTATGGATCACAATTTAGCGC 58.442 34.615 0.00 0.00 29.64 5.92
4550 5573 5.826601 TTTATGGATCACAATTTAGCGCA 57.173 34.783 11.47 0.00 0.00 6.09
4551 5574 6.389830 TTTATGGATCACAATTTAGCGCAT 57.610 33.333 11.47 0.00 0.00 4.73
4552 5575 3.696281 TGGATCACAATTTAGCGCATG 57.304 42.857 11.47 2.69 0.00 4.06
4553 5576 2.223548 TGGATCACAATTTAGCGCATGC 60.224 45.455 11.47 7.91 43.24 4.06
4584 5690 8.196378 ACTAGTACCTTTTTCTGTCAAGAGAT 57.804 34.615 0.00 0.00 32.79 2.75
4596 5702 7.312657 TCTGTCAAGAGATAAATGTGCATTC 57.687 36.000 0.00 0.00 0.00 2.67
4599 5705 6.127925 TGTCAAGAGATAAATGTGCATTCCAC 60.128 38.462 0.00 0.00 44.90 4.02
4609 5715 2.387445 GCATTCCACGCGTGCAGTA 61.387 57.895 33.17 17.19 38.68 2.74
4611 5717 1.014044 CATTCCACGCGTGCAGTAGT 61.014 55.000 33.17 11.92 0.00 2.73
4622 5728 4.319984 CGCGTGCAGTAGTTACCATAGATA 60.320 45.833 0.00 0.00 0.00 1.98
4633 5739 7.863901 AGTTACCATAGATAAGCATCTTCCT 57.136 36.000 0.00 0.00 41.84 3.36
4634 5740 8.958060 AGTTACCATAGATAAGCATCTTCCTA 57.042 34.615 0.00 0.00 41.84 2.94
4647 5753 7.105241 AGCATCTTCCTATTTGAAATGTTCC 57.895 36.000 0.00 0.00 0.00 3.62
4649 5755 7.178983 AGCATCTTCCTATTTGAAATGTTCCAA 59.821 33.333 0.00 0.00 0.00 3.53
4663 5769 7.174946 TGAAATGTTCCAAGGAATACAACTCTC 59.825 37.037 4.63 0.00 36.45 3.20
4664 5770 5.825593 TGTTCCAAGGAATACAACTCTCT 57.174 39.130 4.63 0.00 36.45 3.10
4665 5771 6.928348 TGTTCCAAGGAATACAACTCTCTA 57.072 37.500 4.63 0.00 36.45 2.43
4666 5772 6.698380 TGTTCCAAGGAATACAACTCTCTAC 58.302 40.000 4.63 0.00 36.45 2.59
4669 5775 5.778241 TCCAAGGAATACAACTCTCTACACA 59.222 40.000 0.00 0.00 0.00 3.72
4684 5790 6.379386 TCTCTACACAGAACTGTTTCATACG 58.621 40.000 4.63 0.00 42.83 3.06
4700 5806 5.784578 TCATACGAGTGCACATACCTAAT 57.215 39.130 21.04 0.00 0.00 1.73
4857 6046 7.093333 TGAGATGGCATTCTAAGAGTCTGTAAA 60.093 37.037 0.00 0.00 0.00 2.01
4858 6047 7.624549 AGATGGCATTCTAAGAGTCTGTAAAA 58.375 34.615 0.00 0.00 0.00 1.52
4964 6154 6.069905 TCAGGCTGGTTATCTTTAACATGGTA 60.070 38.462 15.73 0.00 39.62 3.25
5024 6214 7.448228 CAACGATTTGTCACACAGATAGTAAG 58.552 38.462 0.00 0.00 29.81 2.34
5070 6260 0.849094 ACCCACAAGGAGGCCCAATA 60.849 55.000 0.00 0.00 39.89 1.90
5073 6263 2.626683 CCCACAAGGAGGCCCAATAATT 60.627 50.000 0.00 0.00 38.24 1.40
5103 6293 9.284968 TCTCAGGTTAGGAAAATTAACTTGAAG 57.715 33.333 9.99 0.00 42.64 3.02
5524 6715 5.707298 TCACTTGGTTTTGGATCTTCTCATC 59.293 40.000 0.00 0.00 0.00 2.92
5563 6754 9.739276 AAAGTCTGATGGTCAATTCTTAATGTA 57.261 29.630 0.00 0.00 0.00 2.29
5683 6874 3.613030 TGTGAGCTACTACATGGTACGA 58.387 45.455 0.00 0.00 0.00 3.43
5689 6880 4.703575 AGCTACTACATGGTACGAACTTCA 59.296 41.667 0.00 0.00 0.00 3.02
5848 7039 8.688151 GCTCCTCTAGATGAATACGGTAAATAT 58.312 37.037 0.00 0.00 0.00 1.28
5893 7084 8.833231 TGCTAGAAGGATTTACATATAACAGC 57.167 34.615 0.00 0.00 0.00 4.40
6058 7249 5.607119 ACAAGAGGTAAAATAACACAGCG 57.393 39.130 0.00 0.00 0.00 5.18
6131 7324 3.558033 TGACGTACTCCAGGCACATATA 58.442 45.455 0.00 0.00 0.00 0.86
6213 7406 9.403110 CACCAACAGTAGTATTCCGTAATATAC 57.597 37.037 0.00 0.00 30.42 1.47
6335 7528 1.243902 GACCCAGCCGTTTTCATCAA 58.756 50.000 0.00 0.00 0.00 2.57
6345 7538 3.432933 CCGTTTTCATCAAAGGCAAATGG 59.567 43.478 0.00 0.00 0.00 3.16
6616 7809 5.280945 AGGTGTTTTTGTTCATCATTCGTG 58.719 37.500 0.00 0.00 0.00 4.35
6853 8046 6.470557 AAGCAACAACAAATGCACAATATC 57.529 33.333 0.00 0.00 44.95 1.63
6951 8144 4.161189 CACTTCACTCATGTCTATCAGGGT 59.839 45.833 0.00 0.00 0.00 4.34
7300 8500 8.982091 AGCAGACATAGTTCTAGAAGTGTATA 57.018 34.615 20.93 3.25 0.00 1.47
7327 8527 7.362662 ACTAGCCATTTTATCATAATTGCACG 58.637 34.615 0.00 0.00 0.00 5.34
7471 8671 7.728532 ACCAGGTAAATCCAAGTCAACTAATTT 59.271 33.333 0.00 0.00 39.02 1.82
7544 8744 3.270877 GACAGAATAATCGCAGGTTGGT 58.729 45.455 0.00 0.00 0.00 3.67
7563 8763 6.096423 GGTTGGTTTATATGGAGAAGGGAAAC 59.904 42.308 0.00 0.00 0.00 2.78
7574 8774 4.322499 GGAGAAGGGAAACGAATCTACACA 60.322 45.833 0.00 0.00 0.00 3.72
7584 8784 7.095187 GGAAACGAATCTACACACAAGAAGAAT 60.095 37.037 0.00 0.00 0.00 2.40
7610 8810 4.223700 AGCAGTGTTGAATGGACAGAGATA 59.776 41.667 0.00 0.00 0.00 1.98
7615 8815 6.652481 AGTGTTGAATGGACAGAGATAAACAG 59.348 38.462 0.00 0.00 0.00 3.16
7670 8870 7.402862 AGGTACATAAAACCAGCTAGTTCATT 58.597 34.615 0.00 0.00 39.64 2.57
7680 8880 4.274459 CCAGCTAGTTCATTATCTTGTGCC 59.726 45.833 0.00 0.00 0.00 5.01
7691 8891 2.064434 TCTTGTGCCAAATGTCCACA 57.936 45.000 0.00 0.00 37.67 4.17
7892 9092 1.141858 CCTCTCAATCCCTGTAAGCCC 59.858 57.143 0.00 0.00 0.00 5.19
7950 9150 1.553690 ATCTCCCCTGTGACCAACCG 61.554 60.000 0.00 0.00 0.00 4.44
7987 9188 2.028748 ACTGGCATTGCATTTCTGAACC 60.029 45.455 11.39 0.00 0.00 3.62
8204 9405 1.068333 CAAAGGGGCAAACACATCTCG 60.068 52.381 0.00 0.00 0.00 4.04
8216 9417 2.744202 ACACATCTCGGCAATTGAGTTC 59.256 45.455 10.34 0.00 34.99 3.01
8601 9804 5.452917 GGTTAGGTTATACAGATCCGTTGCT 60.453 44.000 0.00 0.00 0.00 3.91
8613 9816 6.155827 CAGATCCGTTGCTTTTAATCCAAAA 58.844 36.000 0.00 0.00 34.89 2.44
8668 9871 7.121759 CCAAACCAACAGATACATCATTCTTCT 59.878 37.037 0.00 0.00 0.00 2.85
8709 9912 0.248012 TCCCTTGCATTTCGAGCGTA 59.752 50.000 0.00 0.00 33.85 4.42
8750 9953 1.209128 GTCCCATCGCTACGACAATG 58.791 55.000 0.00 0.00 39.18 2.82
8806 10009 0.613853 TAGACTGGTGCTAGGGCGTT 60.614 55.000 0.00 0.00 42.25 4.84
8810 10013 0.739813 CTGGTGCTAGGGCGTTGTAC 60.740 60.000 1.77 1.77 42.25 2.90
8854 10057 2.161609 AGAAATCGTTCGGAAATGTGCC 59.838 45.455 0.00 0.00 38.90 5.01
8889 10092 3.953775 CTGTTGCCCCGACCACCT 61.954 66.667 0.00 0.00 0.00 4.00
8890 10093 4.263572 TGTTGCCCCGACCACCTG 62.264 66.667 0.00 0.00 0.00 4.00
8932 10135 3.211963 GATGGCCGCCGCAATCTT 61.212 61.111 4.58 0.00 41.62 2.40
8941 10144 4.876081 CGCAATCTTCGCCGCAGC 62.876 66.667 0.00 0.00 0.00 5.25
8980 10183 1.327303 CCTCCCTTCAGAGATCTCCG 58.673 60.000 19.30 9.51 35.82 4.63
8999 10202 1.271163 CGAACTCCCAACCCTAAAGCA 60.271 52.381 0.00 0.00 0.00 3.91
9006 10209 2.593026 CCAACCCTAAAGCAAACTCCA 58.407 47.619 0.00 0.00 0.00 3.86
9057 10260 4.273480 CCATAAGGCCATAACGAAACAGAG 59.727 45.833 5.01 0.00 0.00 3.35
9079 10283 3.126000 GGAAAGAGAGAATGCAACTTCCG 59.874 47.826 0.00 0.00 0.00 4.30
9099 10303 0.817654 GTCATGGGCTTGGGCTTAAC 59.182 55.000 0.00 0.00 38.73 2.01
9122 10326 1.656818 TTAAGCATGGGCAAGCGAGC 61.657 55.000 0.00 0.00 44.61 5.03
9135 10339 0.605589 AGCGAGCTGTTAGAAGCAGT 59.394 50.000 0.00 0.00 46.08 4.40
9145 10349 5.238650 GCTGTTAGAAGCAGTCAAAAACCTA 59.761 40.000 0.00 0.00 43.01 3.08
9149 10353 1.911057 AGCAGTCAAAAACCTAGCCC 58.089 50.000 0.00 0.00 0.00 5.19
9150 10354 0.521735 GCAGTCAAAAACCTAGCCCG 59.478 55.000 0.00 0.00 0.00 6.13
9155 10359 0.808755 CAAAAACCTAGCCCGCGATT 59.191 50.000 8.23 0.00 0.00 3.34
9165 10369 3.952675 CCGCGATTGGCCGGAATG 61.953 66.667 8.23 0.00 37.46 2.67
9167 10371 2.828549 GCGATTGGCCGGAATGGT 60.829 61.111 5.05 0.00 41.21 3.55
9225 10430 0.036164 TCAGCCACGCCAAACTACAT 59.964 50.000 0.00 0.00 0.00 2.29
9226 10431 0.168788 CAGCCACGCCAAACTACATG 59.831 55.000 0.00 0.00 0.00 3.21
9227 10432 0.960364 AGCCACGCCAAACTACATGG 60.960 55.000 0.00 0.00 41.08 3.66
9228 10433 1.241315 GCCACGCCAAACTACATGGT 61.241 55.000 0.00 0.00 40.23 3.55
9229 10434 1.243902 CCACGCCAAACTACATGGTT 58.756 50.000 0.00 0.00 40.23 3.67
9258 10463 4.851639 AGGCAGATCCTACAAAATCACT 57.148 40.909 0.00 0.00 45.41 3.41
9259 10464 5.957771 AGGCAGATCCTACAAAATCACTA 57.042 39.130 0.00 0.00 45.41 2.74
9260 10465 6.506538 AGGCAGATCCTACAAAATCACTAT 57.493 37.500 0.00 0.00 45.41 2.12
9261 10466 6.904626 AGGCAGATCCTACAAAATCACTATT 58.095 36.000 0.00 0.00 45.41 1.73
9262 10467 7.349598 AGGCAGATCCTACAAAATCACTATTT 58.650 34.615 0.00 0.00 45.41 1.40
9263 10468 7.836183 AGGCAGATCCTACAAAATCACTATTTT 59.164 33.333 0.00 0.00 45.41 1.82
9264 10469 8.470002 GGCAGATCCTACAAAATCACTATTTTT 58.530 33.333 0.00 0.00 41.50 1.94
9290 10495 4.584029 CGAACATCGCAACTCACTAATT 57.416 40.909 0.00 0.00 31.14 1.40
9291 10496 5.696260 CGAACATCGCAACTCACTAATTA 57.304 39.130 0.00 0.00 31.14 1.40
9292 10497 6.089920 CGAACATCGCAACTCACTAATTAA 57.910 37.500 0.00 0.00 31.14 1.40
9293 10498 6.178507 CGAACATCGCAACTCACTAATTAAG 58.821 40.000 0.00 0.00 31.14 1.85
9294 10499 6.034577 CGAACATCGCAACTCACTAATTAAGA 59.965 38.462 0.00 0.00 31.14 2.10
9295 10500 7.411480 CGAACATCGCAACTCACTAATTAAGAA 60.411 37.037 0.00 0.00 31.14 2.52
9296 10501 7.295952 ACATCGCAACTCACTAATTAAGAAG 57.704 36.000 0.00 0.00 0.00 2.85
9297 10502 6.874134 ACATCGCAACTCACTAATTAAGAAGT 59.126 34.615 0.00 0.00 0.00 3.01
9298 10503 8.033038 ACATCGCAACTCACTAATTAAGAAGTA 58.967 33.333 0.00 0.00 0.00 2.24
9299 10504 7.807687 TCGCAACTCACTAATTAAGAAGTAC 57.192 36.000 0.00 0.00 0.00 2.73
9300 10505 7.600065 TCGCAACTCACTAATTAAGAAGTACT 58.400 34.615 0.00 0.00 0.00 2.73
9301 10506 8.086522 TCGCAACTCACTAATTAAGAAGTACTT 58.913 33.333 8.13 8.13 42.04 2.24
9302 10507 8.373992 CGCAACTCACTAATTAAGAAGTACTTC 58.626 37.037 25.24 25.24 39.72 3.01
9318 10523 9.528489 AGAAGTACTTCTCTCAAAGATTACTCT 57.472 33.333 28.73 4.31 46.13 3.24
9319 10524 9.783256 GAAGTACTTCTCTCAAAGATTACTCTC 57.217 37.037 25.30 0.00 34.41 3.20
9320 10525 8.871629 AGTACTTCTCTCAAAGATTACTCTCA 57.128 34.615 0.00 0.00 31.85 3.27
9321 10526 9.474313 AGTACTTCTCTCAAAGATTACTCTCAT 57.526 33.333 0.00 0.00 31.85 2.90
9322 10527 9.730420 GTACTTCTCTCAAAGATTACTCTCATC 57.270 37.037 0.00 0.00 32.82 2.92
9323 10528 8.593945 ACTTCTCTCAAAGATTACTCTCATCT 57.406 34.615 0.00 0.00 32.82 2.90
9324 10529 9.034800 ACTTCTCTCAAAGATTACTCTCATCTT 57.965 33.333 0.00 0.00 41.84 2.40
9345 10550 9.694520 CATCTTATTAGATTGTGAAAAGTGACG 57.305 33.333 0.00 0.00 39.11 4.35
9346 10551 7.739295 TCTTATTAGATTGTGAAAAGTGACGC 58.261 34.615 0.00 0.00 0.00 5.19
9347 10552 2.949714 AGATTGTGAAAAGTGACGCG 57.050 45.000 3.53 3.53 0.00 6.01
9348 10553 1.069906 AGATTGTGAAAAGTGACGCGC 60.070 47.619 5.73 0.00 0.00 6.86
9349 10554 0.944386 ATTGTGAAAAGTGACGCGCT 59.056 45.000 5.73 0.00 0.00 5.92
9350 10555 0.027455 TTGTGAAAAGTGACGCGCTG 59.973 50.000 5.73 1.02 0.00 5.18
9351 10556 1.722507 GTGAAAAGTGACGCGCTGC 60.723 57.895 5.73 0.00 0.00 5.25
9352 10557 2.176926 TGAAAAGTGACGCGCTGCA 61.177 52.632 5.73 0.00 0.00 4.41
9353 10558 1.207593 GAAAAGTGACGCGCTGCAT 59.792 52.632 5.73 0.00 0.00 3.96
9354 10559 1.061799 GAAAAGTGACGCGCTGCATG 61.062 55.000 5.73 0.00 0.00 4.06
9355 10560 1.785041 AAAAGTGACGCGCTGCATGT 61.785 50.000 5.73 0.00 0.00 3.21
9356 10561 2.448153 AAAGTGACGCGCTGCATGTG 62.448 55.000 5.73 0.00 0.00 3.21
9368 10573 3.708195 GCATGTGCATCACTTGTCC 57.292 52.632 12.36 0.00 40.25 4.02
9369 10574 0.171903 GCATGTGCATCACTTGTCCC 59.828 55.000 12.36 0.00 40.25 4.46
9370 10575 1.830279 CATGTGCATCACTTGTCCCT 58.170 50.000 0.00 0.00 35.64 4.20
9371 10576 2.940971 GCATGTGCATCACTTGTCCCTA 60.941 50.000 12.36 0.00 40.25 3.53
9372 10577 3.548770 CATGTGCATCACTTGTCCCTAT 58.451 45.455 0.00 0.00 35.64 2.57
9373 10578 3.266510 TGTGCATCACTTGTCCCTATC 57.733 47.619 0.00 0.00 35.11 2.08
9374 10579 2.840038 TGTGCATCACTTGTCCCTATCT 59.160 45.455 0.00 0.00 35.11 1.98
9375 10580 3.201290 GTGCATCACTTGTCCCTATCTG 58.799 50.000 0.00 0.00 0.00 2.90
9376 10581 2.171237 TGCATCACTTGTCCCTATCTGG 59.829 50.000 0.00 0.00 0.00 3.86
9377 10582 2.435805 GCATCACTTGTCCCTATCTGGA 59.564 50.000 0.00 0.00 38.35 3.86
9378 10583 3.118261 GCATCACTTGTCCCTATCTGGAA 60.118 47.826 0.00 0.00 35.80 3.53
9379 10584 4.701765 CATCACTTGTCCCTATCTGGAAG 58.298 47.826 0.00 0.00 35.80 3.46
9380 10585 3.791320 TCACTTGTCCCTATCTGGAAGT 58.209 45.455 0.00 0.00 35.80 3.01
9381 10586 4.168101 TCACTTGTCCCTATCTGGAAGTT 58.832 43.478 0.00 0.00 35.80 2.66
9382 10587 4.597507 TCACTTGTCCCTATCTGGAAGTTT 59.402 41.667 0.00 0.00 35.80 2.66
9383 10588 4.938226 CACTTGTCCCTATCTGGAAGTTTC 59.062 45.833 0.00 0.00 35.80 2.78
9384 10589 4.846940 ACTTGTCCCTATCTGGAAGTTTCT 59.153 41.667 0.00 0.00 35.80 2.52
9385 10590 5.046231 ACTTGTCCCTATCTGGAAGTTTCTC 60.046 44.000 0.00 0.00 35.80 2.87
9386 10591 4.689062 TGTCCCTATCTGGAAGTTTCTCT 58.311 43.478 0.00 0.00 35.80 3.10
9387 10592 5.094387 TGTCCCTATCTGGAAGTTTCTCTT 58.906 41.667 0.00 0.00 35.80 2.85
9388 10593 5.548056 TGTCCCTATCTGGAAGTTTCTCTTT 59.452 40.000 0.00 0.00 35.80 2.52
9389 10594 6.044404 TGTCCCTATCTGGAAGTTTCTCTTTT 59.956 38.462 0.00 0.00 35.80 2.27
9390 10595 6.943146 GTCCCTATCTGGAAGTTTCTCTTTTT 59.057 38.462 0.00 0.00 35.80 1.94
9438 10643 6.710692 TTTTATCTCTTAAACCGTTCGTCC 57.289 37.500 0.00 0.00 29.47 4.79
9439 10644 3.947910 ATCTCTTAAACCGTTCGTCCA 57.052 42.857 0.00 0.00 0.00 4.02
9440 10645 3.731652 TCTCTTAAACCGTTCGTCCAA 57.268 42.857 0.00 0.00 0.00 3.53
9441 10646 4.057406 TCTCTTAAACCGTTCGTCCAAA 57.943 40.909 0.00 0.00 0.00 3.28
9442 10647 4.634199 TCTCTTAAACCGTTCGTCCAAAT 58.366 39.130 0.00 0.00 0.00 2.32
9443 10648 4.687483 TCTCTTAAACCGTTCGTCCAAATC 59.313 41.667 0.00 0.00 0.00 2.17
9444 10649 4.634199 TCTTAAACCGTTCGTCCAAATCT 58.366 39.130 0.00 0.00 0.00 2.40
9445 10650 4.687483 TCTTAAACCGTTCGTCCAAATCTC 59.313 41.667 0.00 0.00 0.00 2.75
9446 10651 2.536761 AACCGTTCGTCCAAATCTCA 57.463 45.000 0.00 0.00 0.00 3.27
9447 10652 2.536761 ACCGTTCGTCCAAATCTCAA 57.463 45.000 0.00 0.00 0.00 3.02
9448 10653 2.841215 ACCGTTCGTCCAAATCTCAAA 58.159 42.857 0.00 0.00 0.00 2.69
9449 10654 2.546789 ACCGTTCGTCCAAATCTCAAAC 59.453 45.455 0.00 0.00 0.00 2.93
9450 10655 2.095919 CCGTTCGTCCAAATCTCAAACC 60.096 50.000 0.00 0.00 0.00 3.27
9451 10656 2.411031 CGTTCGTCCAAATCTCAAACCG 60.411 50.000 0.00 0.00 0.00 4.44
9452 10657 2.536761 TCGTCCAAATCTCAAACCGT 57.463 45.000 0.00 0.00 0.00 4.83
9453 10658 2.841215 TCGTCCAAATCTCAAACCGTT 58.159 42.857 0.00 0.00 0.00 4.44
9454 10659 3.207778 TCGTCCAAATCTCAAACCGTTT 58.792 40.909 0.00 0.00 0.00 3.60
9455 10660 3.628487 TCGTCCAAATCTCAAACCGTTTT 59.372 39.130 0.00 0.00 0.00 2.43
9456 10661 3.972502 CGTCCAAATCTCAAACCGTTTTC 59.027 43.478 0.00 0.00 0.00 2.29
9457 10662 4.496673 CGTCCAAATCTCAAACCGTTTTCA 60.497 41.667 0.00 0.00 0.00 2.69
9458 10663 5.528870 GTCCAAATCTCAAACCGTTTTCAT 58.471 37.500 0.00 0.00 0.00 2.57
9459 10664 5.629435 GTCCAAATCTCAAACCGTTTTCATC 59.371 40.000 0.00 0.00 0.00 2.92
9460 10665 4.616802 CCAAATCTCAAACCGTTTTCATCG 59.383 41.667 0.00 0.00 0.00 3.84
9461 10666 5.212194 CAAATCTCAAACCGTTTTCATCGT 58.788 37.500 0.00 0.00 0.00 3.73
9462 10667 5.432885 AATCTCAAACCGTTTTCATCGTT 57.567 34.783 0.00 0.00 0.00 3.85
9463 10668 4.203950 TCTCAAACCGTTTTCATCGTTG 57.796 40.909 0.00 0.00 0.00 4.10
9464 10669 3.002862 TCTCAAACCGTTTTCATCGTTGG 59.997 43.478 0.00 0.00 0.00 3.77
9465 10670 2.943690 TCAAACCGTTTTCATCGTTGGA 59.056 40.909 0.00 0.00 0.00 3.53
9466 10671 3.566322 TCAAACCGTTTTCATCGTTGGAT 59.434 39.130 0.00 0.00 0.00 3.41
9467 10672 4.036971 TCAAACCGTTTTCATCGTTGGATT 59.963 37.500 0.00 0.00 0.00 3.01
9468 10673 3.824414 ACCGTTTTCATCGTTGGATTC 57.176 42.857 0.00 0.00 0.00 2.52
9469 10674 3.142951 ACCGTTTTCATCGTTGGATTCA 58.857 40.909 0.00 0.00 0.00 2.57
9470 10675 3.756434 ACCGTTTTCATCGTTGGATTCAT 59.244 39.130 0.00 0.00 0.00 2.57
9471 10676 4.097714 CCGTTTTCATCGTTGGATTCATG 58.902 43.478 0.00 0.00 0.00 3.07
9472 10677 4.379394 CCGTTTTCATCGTTGGATTCATGT 60.379 41.667 0.00 0.00 0.00 3.21
9473 10678 4.788100 CGTTTTCATCGTTGGATTCATGTC 59.212 41.667 0.00 0.00 0.00 3.06
9474 10679 5.616645 CGTTTTCATCGTTGGATTCATGTCA 60.617 40.000 0.00 0.00 0.00 3.58
9475 10680 5.956068 TTTCATCGTTGGATTCATGTCAA 57.044 34.783 0.00 0.00 0.00 3.18
9476 10681 5.550232 TTCATCGTTGGATTCATGTCAAG 57.450 39.130 0.00 0.00 0.00 3.02
9477 10682 4.831107 TCATCGTTGGATTCATGTCAAGA 58.169 39.130 0.00 0.00 0.00 3.02
9478 10683 5.430886 TCATCGTTGGATTCATGTCAAGAT 58.569 37.500 0.00 0.00 0.00 2.40
9479 10684 5.525012 TCATCGTTGGATTCATGTCAAGATC 59.475 40.000 0.00 0.00 0.00 2.75
9480 10685 5.089970 TCGTTGGATTCATGTCAAGATCT 57.910 39.130 0.00 0.00 0.00 2.75
9481 10686 5.491070 TCGTTGGATTCATGTCAAGATCTT 58.509 37.500 0.88 0.88 0.00 2.40
9482 10687 6.639563 TCGTTGGATTCATGTCAAGATCTTA 58.360 36.000 7.86 0.00 0.00 2.10
9483 10688 7.102993 TCGTTGGATTCATGTCAAGATCTTAA 58.897 34.615 7.86 0.00 0.00 1.85
9484 10689 7.606073 TCGTTGGATTCATGTCAAGATCTTAAA 59.394 33.333 7.86 0.00 0.00 1.52
9485 10690 8.236586 CGTTGGATTCATGTCAAGATCTTAAAA 58.763 33.333 7.86 0.00 0.00 1.52
9486 10691 9.912634 GTTGGATTCATGTCAAGATCTTAAAAA 57.087 29.630 7.86 0.00 0.00 1.94
9487 10692 9.912634 TTGGATTCATGTCAAGATCTTAAAAAC 57.087 29.630 7.86 5.24 0.00 2.43
9488 10693 9.300681 TGGATTCATGTCAAGATCTTAAAAACT 57.699 29.630 7.86 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.533033 TGGTGACAGGAGCGGAGAA 60.533 57.895 0.00 0.00 35.01 2.87
34 35 0.396435 AGAAGGCGTGAACATGGTGA 59.604 50.000 0.00 0.00 0.00 4.02
56 57 6.151691 GTGCTACAAAACACATGTCATGAAT 58.848 36.000 19.77 3.92 36.77 2.57
60 61 4.144297 AGGTGCTACAAAACACATGTCAT 58.856 39.130 0.00 0.00 38.57 3.06
63 64 3.820557 AGAGGTGCTACAAAACACATGT 58.179 40.909 0.00 0.00 38.57 3.21
88 89 9.255304 CCATTATAGAAGAAGTTAAGAGTGAGC 57.745 37.037 0.00 0.00 0.00 4.26
103 104 7.959651 GCTTTGCGTATCATTCCATTATAGAAG 59.040 37.037 0.00 0.00 0.00 2.85
150 156 5.452777 GCACAATTTAGCCGGAATATCTTC 58.547 41.667 5.05 0.00 0.00 2.87
210 216 3.837213 ATCTTGCTTTTGTGTGATCGG 57.163 42.857 0.00 0.00 0.00 4.18
221 227 8.301730 CATGTTTGTCATGTTTATCTTGCTTT 57.698 30.769 0.00 0.00 46.18 3.51
233 239 6.577957 GCAAGGTGCTCATGTTTGTCATGT 62.578 45.833 7.53 0.00 42.95 3.21
345 351 1.153756 AAGCAAGACTTGGGGGTGG 59.846 57.895 16.80 0.00 37.17 4.61
346 352 4.929807 AAGCAAGACTTGGGGGTG 57.070 55.556 16.80 0.00 37.17 4.61
391 397 4.684484 TCAATGATGGTGGAGATGAGAG 57.316 45.455 0.00 0.00 0.00 3.20
392 398 4.657039 TGATCAATGATGGTGGAGATGAGA 59.343 41.667 0.00 0.00 0.00 3.27
393 399 4.969484 TGATCAATGATGGTGGAGATGAG 58.031 43.478 0.00 0.00 0.00 2.90
394 400 5.376756 TTGATCAATGATGGTGGAGATGA 57.623 39.130 3.38 0.00 0.00 2.92
447 460 2.115052 TGTCCGCCTTGCCACAAT 59.885 55.556 0.00 0.00 0.00 2.71
485 498 0.027586 GGTCGCCACGCACATTAATC 59.972 55.000 0.00 0.00 0.00 1.75
525 538 4.141233 AGTTTTTGCCAGCAAATGAACT 57.859 36.364 21.19 21.19 44.14 3.01
527 540 4.879104 CAAGTTTTTGCCAGCAAATGAA 57.121 36.364 17.80 8.18 44.14 2.57
567 580 5.220758 CGCATCGACTAGTGCATAGATAGAT 60.221 44.000 0.00 7.83 41.32 1.98
574 587 2.119671 CACGCATCGACTAGTGCATA 57.880 50.000 0.00 0.00 41.32 3.14
582 595 1.141665 TGCATAGCACGCATCGACT 59.858 52.632 0.00 0.00 33.55 4.18
624 637 5.010282 ACAGTTCACAGTCCCATTATTTCC 58.990 41.667 0.00 0.00 0.00 3.13
625 638 7.174253 TGTTACAGTTCACAGTCCCATTATTTC 59.826 37.037 0.00 0.00 0.00 2.17
633 646 3.924686 CGTATGTTACAGTTCACAGTCCC 59.075 47.826 0.00 0.00 0.00 4.46
659 672 2.357637 CAGTGCTTTCCAGAAAAACCGA 59.642 45.455 0.00 0.00 0.00 4.69
954 973 0.169009 CTTAGCCAGGCAAAACGCTC 59.831 55.000 15.80 0.00 41.91 5.03
974 993 0.179936 GCCCTTGCAGTATCAGCTCT 59.820 55.000 0.00 0.00 37.47 4.09
988 1007 2.975489 CCCTGTACATATCTCTGCCCTT 59.025 50.000 0.00 0.00 0.00 3.95
992 1011 2.885266 TCGACCCTGTACATATCTCTGC 59.115 50.000 0.00 0.00 0.00 4.26
1029 1048 3.558411 GTCAGCACGATGAGCGCC 61.558 66.667 2.29 0.00 46.04 6.53
1117 1148 4.379243 CAGAGCCCTGCCGTCGTT 62.379 66.667 0.00 0.00 33.07 3.85
1279 1310 4.532521 AGGTAGGCGATCCTATGCTAAATT 59.467 41.667 0.00 0.00 46.06 1.82
1281 1312 3.258372 CAGGTAGGCGATCCTATGCTAAA 59.742 47.826 0.00 0.00 46.06 1.85
1295 1326 0.960861 GCAACCAGAACCAGGTAGGC 60.961 60.000 0.00 0.00 43.14 3.93
1296 1327 0.322546 GGCAACCAGAACCAGGTAGG 60.323 60.000 0.00 0.00 38.76 3.18
1297 1328 0.400213 TGGCAACCAGAACCAGGTAG 59.600 55.000 0.00 0.00 38.76 3.18
1298 1329 0.847373 TTGGCAACCAGAACCAGGTA 59.153 50.000 0.00 0.00 38.76 3.08
1302 1333 2.079170 TTGATTGGCAACCAGAACCA 57.921 45.000 0.00 0.00 33.81 3.67
1304 1335 2.562298 TGGATTGATTGGCAACCAGAAC 59.438 45.455 0.00 0.00 39.78 3.01
1306 1337 2.170166 GTGGATTGATTGGCAACCAGA 58.830 47.619 0.00 0.00 39.78 3.86
1307 1338 1.135315 CGTGGATTGATTGGCAACCAG 60.135 52.381 0.00 0.00 39.78 4.00
1308 1339 0.887247 CGTGGATTGATTGGCAACCA 59.113 50.000 0.00 1.58 39.78 3.67
1310 1341 0.458370 GGCGTGGATTGATTGGCAAC 60.458 55.000 0.00 0.00 39.78 4.17
1314 1345 0.680921 AGGTGGCGTGGATTGATTGG 60.681 55.000 0.00 0.00 0.00 3.16
1315 1346 1.135315 CAAGGTGGCGTGGATTGATTG 60.135 52.381 0.00 0.00 0.00 2.67
1316 1347 1.176527 CAAGGTGGCGTGGATTGATT 58.823 50.000 0.00 0.00 0.00 2.57
1317 1348 0.038166 ACAAGGTGGCGTGGATTGAT 59.962 50.000 0.00 0.00 0.00 2.57
1319 1350 1.580942 CACAAGGTGGCGTGGATTG 59.419 57.895 0.00 0.00 0.00 2.67
1320 1351 2.268076 GCACAAGGTGGCGTGGATT 61.268 57.895 0.00 0.00 33.64 3.01
1321 1352 1.836999 TAGCACAAGGTGGCGTGGAT 61.837 55.000 0.00 0.00 33.64 3.41
1322 1353 2.046009 TTAGCACAAGGTGGCGTGGA 62.046 55.000 0.00 0.00 33.64 4.02
1356 1480 3.749981 CCCGAGCATGGCATTACC 58.250 61.111 0.00 0.00 39.84 2.85
1532 1665 2.481185 GCACGAATTTACGACCAAGGAA 59.519 45.455 0.00 0.00 37.03 3.36
1535 1668 2.724839 GCTGCACGAATTTACGACCAAG 60.725 50.000 0.00 0.00 37.03 3.61
1632 1776 6.901887 CGATGAGCATTGTTTGTTATCAGTAC 59.098 38.462 0.00 0.00 0.00 2.73
1649 1793 0.602638 AACTCCGCAAACGATGAGCA 60.603 50.000 0.00 0.00 43.93 4.26
1661 1805 0.729140 CGCACCAATCAAAACTCCGC 60.729 55.000 0.00 0.00 0.00 5.54
1686 1830 5.390885 GGATGCATGCACCAGTATATTAACG 60.391 44.000 25.37 0.00 0.00 3.18
1697 1841 0.620030 ACTACTGGATGCATGCACCA 59.380 50.000 28.57 28.57 0.00 4.17
1778 1950 3.853831 TTCGTATGAGGCGTTCAGTTA 57.146 42.857 0.00 0.00 39.68 2.24
1828 2013 0.761187 TGATCTACTCCATGGCTGGC 59.239 55.000 6.96 0.00 42.80 4.85
1829 2014 3.784511 AATGATCTACTCCATGGCTGG 57.215 47.619 6.96 2.10 44.64 4.85
1854 2039 9.120538 GCATAAAAATGATCTAACAGTCCCTAA 57.879 33.333 0.00 0.00 0.00 2.69
1856 2041 6.260936 CGCATAAAAATGATCTAACAGTCCCT 59.739 38.462 0.00 0.00 0.00 4.20
1857 2042 6.038271 ACGCATAAAAATGATCTAACAGTCCC 59.962 38.462 0.00 0.00 0.00 4.46
1858 2043 7.016361 ACGCATAAAAATGATCTAACAGTCC 57.984 36.000 0.00 0.00 0.00 3.85
1864 2049 9.151471 GCTCCTATACGCATAAAAATGATCTAA 57.849 33.333 0.00 0.00 0.00 2.10
1897 2082 1.168714 GAGGTTGTCAGGTTGATGGC 58.831 55.000 0.00 0.00 0.00 4.40
1903 2088 1.346068 GAGCAGAGAGGTTGTCAGGTT 59.654 52.381 0.00 0.00 0.00 3.50
1904 2089 0.972883 GAGCAGAGAGGTTGTCAGGT 59.027 55.000 0.00 0.00 0.00 4.00
1906 2091 2.827800 TTGAGCAGAGAGGTTGTCAG 57.172 50.000 0.00 0.00 0.00 3.51
1907 2092 3.470709 CTTTTGAGCAGAGAGGTTGTCA 58.529 45.455 0.00 0.00 0.00 3.58
1908 2093 2.225255 GCTTTTGAGCAGAGAGGTTGTC 59.775 50.000 0.00 0.00 34.41 3.18
1909 2094 2.158696 AGCTTTTGAGCAGAGAGGTTGT 60.159 45.455 0.88 0.00 37.25 3.32
1926 2113 3.581755 TGATGCGTTCGTAGTAAAGCTT 58.418 40.909 0.00 0.00 35.27 3.74
1947 2134 7.453752 TGGTGTAGAATTACTTGTAGAGAGGTT 59.546 37.037 0.00 0.00 0.00 3.50
1948 2135 6.952358 TGGTGTAGAATTACTTGTAGAGAGGT 59.048 38.462 0.00 0.00 0.00 3.85
1949 2136 7.122948 AGTGGTGTAGAATTACTTGTAGAGAGG 59.877 40.741 0.00 0.00 0.00 3.69
1951 2138 8.304596 CAAGTGGTGTAGAATTACTTGTAGAGA 58.695 37.037 0.00 0.00 41.82 3.10
1952 2139 7.545965 CCAAGTGGTGTAGAATTACTTGTAGAG 59.454 40.741 11.93 0.00 43.99 2.43
2016 2225 9.829507 AGAAGGACAGATTCTACAAGATTATTG 57.170 33.333 0.00 0.00 35.26 1.90
2032 2241 4.141505 TGGTCATTGTTTCAGAAGGACAGA 60.142 41.667 0.00 0.00 36.15 3.41
2038 2247 8.517878 AGACATTAATGGTCATTGTTTCAGAAG 58.482 33.333 19.37 0.00 37.74 2.85
2176 2425 8.973378 TGGAAACGTGATTTTGACAATTAATTC 58.027 29.630 0.00 0.00 0.00 2.17
2213 2462 4.054671 TCGAATTTGTTGTTTTGGGCATC 58.945 39.130 0.00 0.00 0.00 3.91
2259 2508 5.694006 CGATCAGGATTAATTGAGGTGAGAC 59.306 44.000 0.00 0.00 0.00 3.36
2261 2510 5.464722 CACGATCAGGATTAATTGAGGTGAG 59.535 44.000 13.63 1.40 35.45 3.51
2410 2668 5.417580 TCGGTAATGAAGGCTTAATTGCTTT 59.582 36.000 20.56 7.14 34.94 3.51
2422 2680 8.582437 TGGAGTATAGTAAATCGGTAATGAAGG 58.418 37.037 0.00 0.00 0.00 3.46
2451 2709 2.287849 GGCTTGTCTTTTTGCTGGTCTC 60.288 50.000 0.00 0.00 0.00 3.36
2453 2711 1.408702 TGGCTTGTCTTTTTGCTGGTC 59.591 47.619 0.00 0.00 0.00 4.02
2620 2887 1.153289 CGCTGGCTGATAGTTGGCT 60.153 57.895 0.00 0.00 0.00 4.75
2645 2912 0.240145 TGGTCATGACTCACGACGTC 59.760 55.000 24.50 5.18 0.00 4.34
2692 2965 3.112075 CTGCAGTACCCACGCACG 61.112 66.667 5.25 0.00 33.05 5.34
2748 3021 4.426313 CACCTCCTTTCCCGCCCC 62.426 72.222 0.00 0.00 0.00 5.80
2749 3022 3.327404 TCACCTCCTTTCCCGCCC 61.327 66.667 0.00 0.00 0.00 6.13
2750 3023 2.269241 CTCACCTCCTTTCCCGCC 59.731 66.667 0.00 0.00 0.00 6.13
2751 3024 1.262640 TACCTCACCTCCTTTCCCGC 61.263 60.000 0.00 0.00 0.00 6.13
2752 3025 1.139058 CATACCTCACCTCCTTTCCCG 59.861 57.143 0.00 0.00 0.00 5.14
2753 3026 2.478292 TCATACCTCACCTCCTTTCCC 58.522 52.381 0.00 0.00 0.00 3.97
2754 3027 3.181450 CCATCATACCTCACCTCCTTTCC 60.181 52.174 0.00 0.00 0.00 3.13
2755 3028 3.745797 GCCATCATACCTCACCTCCTTTC 60.746 52.174 0.00 0.00 0.00 2.62
2765 3486 0.475906 AAGCCCTGCCATCATACCTC 59.524 55.000 0.00 0.00 0.00 3.85
2857 3578 1.975407 CCAAAGCCCTGCTGGACAG 60.975 63.158 11.88 0.00 46.77 3.51
2884 3612 1.075659 GGAGGGTGGAAGCTTTGCT 59.924 57.895 0.00 0.00 42.56 3.91
2894 3623 0.698238 TGACCAAATCAGGAGGGTGG 59.302 55.000 0.00 0.00 32.77 4.61
2910 3639 8.395633 GTTACCATTGAATAACTACACCATGAC 58.604 37.037 0.00 0.00 0.00 3.06
2924 3653 4.295141 TGGACTTCCGTTACCATTGAAT 57.705 40.909 0.00 0.00 39.43 2.57
2939 3670 3.067106 CACACGCTAGACAATTGGACTT 58.933 45.455 10.83 0.00 0.00 3.01
2964 3695 6.839124 TCTTTATGTCAGGAGTACCGTAAA 57.161 37.500 0.00 0.00 41.83 2.01
2965 3696 6.839124 TTCTTTATGTCAGGAGTACCGTAA 57.161 37.500 0.00 0.00 41.83 3.18
2966 3697 6.839124 TTTCTTTATGTCAGGAGTACCGTA 57.161 37.500 0.00 0.00 41.83 4.02
2967 3698 5.733620 TTTCTTTATGTCAGGAGTACCGT 57.266 39.130 0.00 0.00 41.83 4.83
2968 3699 9.976511 TTATATTTCTTTATGTCAGGAGTACCG 57.023 33.333 0.00 0.00 41.83 4.02
2972 3703 9.771534 GCTCTTATATTTCTTTATGTCAGGAGT 57.228 33.333 0.00 0.00 0.00 3.85
2973 3704 8.920665 CGCTCTTATATTTCTTTATGTCAGGAG 58.079 37.037 0.00 0.00 0.00 3.69
2974 3705 8.421784 ACGCTCTTATATTTCTTTATGTCAGGA 58.578 33.333 0.00 0.00 0.00 3.86
2975 3706 8.594881 ACGCTCTTATATTTCTTTATGTCAGG 57.405 34.615 0.00 0.00 0.00 3.86
2987 3718 9.915629 CCTAGTGATCTAAACGCTCTTATATTT 57.084 33.333 0.00 0.00 0.00 1.40
2988 3719 9.298250 TCCTAGTGATCTAAACGCTCTTATATT 57.702 33.333 0.00 0.00 0.00 1.28
2989 3720 8.865420 TCCTAGTGATCTAAACGCTCTTATAT 57.135 34.615 0.00 0.00 0.00 0.86
2990 3721 7.937942 ACTCCTAGTGATCTAAACGCTCTTATA 59.062 37.037 0.00 0.00 0.00 0.98
2991 3722 6.773685 ACTCCTAGTGATCTAAACGCTCTTAT 59.226 38.462 0.00 0.00 0.00 1.73
2992 3723 6.120905 ACTCCTAGTGATCTAAACGCTCTTA 58.879 40.000 0.00 0.00 0.00 2.10
2993 3724 4.951094 ACTCCTAGTGATCTAAACGCTCTT 59.049 41.667 0.00 0.00 0.00 2.85
2994 3725 4.528920 ACTCCTAGTGATCTAAACGCTCT 58.471 43.478 0.00 0.00 0.00 4.09
2995 3726 4.904253 ACTCCTAGTGATCTAAACGCTC 57.096 45.455 0.00 0.00 0.00 5.03
2996 3727 5.438833 AGTACTCCTAGTGATCTAAACGCT 58.561 41.667 0.00 0.00 0.00 5.07
2997 3728 5.754543 AGTACTCCTAGTGATCTAAACGC 57.245 43.478 0.00 0.00 0.00 4.84
2998 3729 6.420588 CGAAGTACTCCTAGTGATCTAAACG 58.579 44.000 0.00 0.00 0.00 3.60
2999 3730 6.318396 ACCGAAGTACTCCTAGTGATCTAAAC 59.682 42.308 0.00 0.00 0.00 2.01
3000 3731 6.421485 ACCGAAGTACTCCTAGTGATCTAAA 58.579 40.000 0.00 0.00 0.00 1.85
3001 3732 5.999044 ACCGAAGTACTCCTAGTGATCTAA 58.001 41.667 0.00 0.00 0.00 2.10
3002 3733 5.627182 ACCGAAGTACTCCTAGTGATCTA 57.373 43.478 0.00 0.00 0.00 1.98
3003 3734 4.506937 ACCGAAGTACTCCTAGTGATCT 57.493 45.455 0.00 0.00 0.00 2.75
3004 3735 4.398673 ACAACCGAAGTACTCCTAGTGATC 59.601 45.833 0.00 0.00 0.00 2.92
3005 3736 4.342359 ACAACCGAAGTACTCCTAGTGAT 58.658 43.478 0.00 0.00 0.00 3.06
3006 3737 3.755378 GACAACCGAAGTACTCCTAGTGA 59.245 47.826 0.00 0.00 0.00 3.41
3007 3738 3.757493 AGACAACCGAAGTACTCCTAGTG 59.243 47.826 0.00 0.00 0.00 2.74
3008 3739 4.031636 AGACAACCGAAGTACTCCTAGT 57.968 45.455 0.00 0.00 0.00 2.57
3009 3740 5.184711 ACTAGACAACCGAAGTACTCCTAG 58.815 45.833 0.00 0.00 0.00 3.02
3010 3741 5.171339 ACTAGACAACCGAAGTACTCCTA 57.829 43.478 0.00 0.00 0.00 2.94
3011 3742 4.031636 ACTAGACAACCGAAGTACTCCT 57.968 45.455 0.00 0.00 0.00 3.69
3012 3743 4.780275 AACTAGACAACCGAAGTACTCC 57.220 45.455 0.00 0.00 0.00 3.85
3013 3744 6.478016 ACAAAAACTAGACAACCGAAGTACTC 59.522 38.462 0.00 0.00 0.00 2.59
3031 3765 5.399013 CCTCCATATCGGTCAAACAAAAAC 58.601 41.667 0.00 0.00 35.57 2.43
3055 3789 3.225177 AGAGATGCAATTCCCTCATGG 57.775 47.619 0.00 0.00 0.00 3.66
3138 3877 8.424918 GGTTCAAATTCTATAGGAGACAGATCA 58.575 37.037 0.00 0.00 32.31 2.92
3178 3917 5.588246 GGGGTTCAAATTCTTTGCTCAAAAA 59.412 36.000 0.00 0.00 40.43 1.94
3183 3922 3.306294 CCAGGGGTTCAAATTCTTTGCTC 60.306 47.826 0.00 0.00 40.43 4.26
3185 3924 2.368548 ACCAGGGGTTCAAATTCTTTGC 59.631 45.455 0.00 0.00 40.43 3.68
3186 3925 4.687901 AACCAGGGGTTCAAATTCTTTG 57.312 40.909 0.00 0.00 43.05 2.77
3222 3966 4.687901 AACCAGGGGTTCAAATTCTTTG 57.312 40.909 0.00 0.00 43.05 2.77
3224 3968 5.708736 AAAAACCAGGGGTTCAAATTCTT 57.291 34.783 0.40 0.00 46.20 2.52
3244 3988 5.221621 CCAGGGGTTCAAAAGATGCTAAAAA 60.222 40.000 0.00 0.00 0.00 1.94
3245 3989 4.283212 CCAGGGGTTCAAAAGATGCTAAAA 59.717 41.667 0.00 0.00 0.00 1.52
3250 3994 1.273327 CACCAGGGGTTCAAAAGATGC 59.727 52.381 0.00 0.00 31.02 3.91
3252 3996 1.133199 TGCACCAGGGGTTCAAAAGAT 60.133 47.619 0.00 0.00 31.02 2.40
3253 3997 0.260230 TGCACCAGGGGTTCAAAAGA 59.740 50.000 0.00 0.00 31.02 2.52
3254 3998 0.389025 GTGCACCAGGGGTTCAAAAG 59.611 55.000 5.22 0.00 29.65 2.27
3255 3999 1.388065 CGTGCACCAGGGGTTCAAAA 61.388 55.000 12.15 0.00 29.65 2.44
3256 4000 1.826054 CGTGCACCAGGGGTTCAAA 60.826 57.895 12.15 0.00 29.65 2.69
3257 4001 2.203280 CGTGCACCAGGGGTTCAA 60.203 61.111 12.15 0.00 29.65 2.69
3258 4002 4.947147 GCGTGCACCAGGGGTTCA 62.947 66.667 12.15 0.00 31.02 3.18
3259 4003 4.643387 AGCGTGCACCAGGGGTTC 62.643 66.667 12.15 0.00 31.02 3.62
3260 4004 4.954970 CAGCGTGCACCAGGGGTT 62.955 66.667 12.15 0.00 31.02 4.11
3275 4019 2.097038 GCTACTGACCTGCGTGCAG 61.097 63.158 14.82 14.82 43.26 4.41
3319 4063 5.017490 AGAAATCCTAACTCTGAACCGAGA 58.983 41.667 0.67 0.00 35.06 4.04
3338 4082 1.003580 AGGCAAGCCGATGAGAAGAAA 59.996 47.619 5.28 0.00 41.95 2.52
3349 4109 2.964978 CCCAAGAAAGGCAAGCCG 59.035 61.111 5.28 0.00 41.95 5.52
3363 4123 0.544223 ATGTAAGCCGTATGTGCCCA 59.456 50.000 0.00 0.00 0.00 5.36
3366 4126 0.307760 GCCATGTAAGCCGTATGTGC 59.692 55.000 0.00 0.00 0.00 4.57
3411 4171 3.721706 GGGGCAGGACAGTGGGAG 61.722 72.222 0.00 0.00 0.00 4.30
3447 4258 5.868454 TCAGAAAAGTGTCATGATCCTGAA 58.132 37.500 0.00 0.00 0.00 3.02
3454 4265 5.824624 AGCTTCTTTCAGAAAAGTGTCATGA 59.175 36.000 0.00 0.00 42.17 3.07
3528 4339 3.442625 GGAAGTACTTGGTAATTGTGGGC 59.557 47.826 14.14 0.00 0.00 5.36
3661 4482 6.801953 TGGTTTACCAAGGGGAATTATTACA 58.198 36.000 0.00 0.00 44.35 2.41
3676 4508 6.451393 GTGCAAGTTTGATATTGGTTTACCA 58.549 36.000 0.00 0.00 45.94 3.25
3677 4509 5.571357 CGTGCAAGTTTGATATTGGTTTACC 59.429 40.000 0.00 0.00 0.00 2.85
3678 4510 5.571357 CCGTGCAAGTTTGATATTGGTTTAC 59.429 40.000 0.00 0.00 0.00 2.01
3679 4511 5.704888 CCGTGCAAGTTTGATATTGGTTTA 58.295 37.500 0.00 0.00 0.00 2.01
3680 4512 4.555262 CCGTGCAAGTTTGATATTGGTTT 58.445 39.130 0.00 0.00 0.00 3.27
3681 4513 3.613910 GCCGTGCAAGTTTGATATTGGTT 60.614 43.478 0.00 0.00 0.00 3.67
3682 4514 2.094752 GCCGTGCAAGTTTGATATTGGT 60.095 45.455 0.00 0.00 0.00 3.67
3683 4515 2.164219 AGCCGTGCAAGTTTGATATTGG 59.836 45.455 0.00 0.00 0.00 3.16
3684 4516 3.492421 AGCCGTGCAAGTTTGATATTG 57.508 42.857 0.00 0.00 0.00 1.90
3701 4533 8.547894 CAAAATTTTACCAGTGACTTTTTAGCC 58.452 33.333 2.44 0.00 0.00 3.93
3711 4543 6.071616 GGTATGCCTCAAAATTTTACCAGTGA 60.072 38.462 2.44 0.00 0.00 3.41
3781 4613 1.717077 TGTCTCCCTCCCTCTACTTGT 59.283 52.381 0.00 0.00 0.00 3.16
3836 4669 1.892474 CTCATCTCCGGAAGAGGATCC 59.108 57.143 15.37 2.48 43.45 3.36
3851 4684 7.283127 TGCCTAATATTTGACCTTTGTCTCATC 59.717 37.037 0.00 0.00 42.28 2.92
3918 4751 7.169645 CAGAAGAAGTAGCTCATTAGAGAATGC 59.830 40.741 0.00 0.00 44.98 3.56
3965 4798 6.085573 CACATCTGTCAATTGAAATACGCAA 58.914 36.000 10.35 0.00 0.00 4.85
4105 4938 7.013559 TCCCTTTGACAGACATATTTATGCATG 59.986 37.037 10.16 0.00 37.19 4.06
4113 4946 9.479549 AATATGTTTCCCTTTGACAGACATATT 57.520 29.630 11.10 11.10 41.06 1.28
4116 4949 7.781324 AAATATGTTTCCCTTTGACAGACAT 57.219 32.000 0.00 0.00 0.00 3.06
4169 5002 7.408910 TGCGATGATACAATTGAAACATACAG 58.591 34.615 13.59 9.47 0.00 2.74
4170 5003 7.313951 TGCGATGATACAATTGAAACATACA 57.686 32.000 13.59 11.70 0.00 2.29
4171 5004 8.069574 TGATGCGATGATACAATTGAAACATAC 58.930 33.333 13.59 9.68 0.00 2.39
4172 5005 8.152309 TGATGCGATGATACAATTGAAACATA 57.848 30.769 13.59 0.00 0.00 2.29
4173 5006 7.030075 TGATGCGATGATACAATTGAAACAT 57.970 32.000 13.59 13.01 0.00 2.71
4181 5014 9.494271 AAAGTTATACTGATGCGATGATACAAT 57.506 29.630 0.00 0.00 0.00 2.71
4249 5082 2.808567 GCTTACATAGAGCCCTTGAGCC 60.809 54.545 0.00 0.00 34.06 4.70
4418 5441 2.675889 GCAAACAGCCATTGGATTCAGG 60.676 50.000 6.95 0.00 37.23 3.86
4478 5501 2.369668 TTGGGGAGTAATCAAGGGGA 57.630 50.000 0.00 0.00 0.00 4.81
4485 5508 8.166422 ACGATATTGAAAATTGGGGAGTAATC 57.834 34.615 0.00 0.00 0.00 1.75
4504 5527 5.864418 TTGCAACTAGGAGGTAACGATAT 57.136 39.130 0.00 0.00 46.39 1.63
4512 5535 5.826643 TCCATAAATTTGCAACTAGGAGGT 58.173 37.500 0.00 0.00 0.00 3.85
4517 5540 9.590451 AATTGTGATCCATAAATTTGCAACTAG 57.410 29.630 0.00 0.00 0.00 2.57
4528 5551 5.826601 TGCGCTAAATTGTGATCCATAAA 57.173 34.783 9.73 0.00 0.00 1.40
4529 5552 5.761003 CATGCGCTAAATTGTGATCCATAA 58.239 37.500 9.73 0.00 0.00 1.90
4530 5553 4.320421 GCATGCGCTAAATTGTGATCCATA 60.320 41.667 9.73 0.00 34.30 2.74
4531 5554 3.551454 GCATGCGCTAAATTGTGATCCAT 60.551 43.478 9.73 0.00 34.30 3.41
4532 5555 2.223548 GCATGCGCTAAATTGTGATCCA 60.224 45.455 9.73 0.00 34.30 3.41
4533 5556 2.388121 GCATGCGCTAAATTGTGATCC 58.612 47.619 9.73 0.00 34.30 3.36
4542 5565 7.470981 AGGTACTAGTATTAAGCATGCGCTAAA 60.471 37.037 13.01 5.80 44.28 1.85
4543 5566 6.015688 AGGTACTAGTATTAAGCATGCGCTAA 60.016 38.462 13.01 14.21 44.28 3.09
4544 5567 5.475909 AGGTACTAGTATTAAGCATGCGCTA 59.524 40.000 13.01 5.19 44.28 4.26
4545 5568 4.281182 AGGTACTAGTATTAAGCATGCGCT 59.719 41.667 13.01 6.29 46.87 5.92
4546 5569 4.557205 AGGTACTAGTATTAAGCATGCGC 58.443 43.478 13.01 0.00 36.02 6.09
4547 5570 7.478520 AAAAGGTACTAGTATTAAGCATGCG 57.521 36.000 13.01 0.00 38.49 4.73
4548 5571 9.110502 AGAAAAAGGTACTAGTATTAAGCATGC 57.889 33.333 10.51 10.51 38.49 4.06
4551 5574 9.649167 GACAGAAAAAGGTACTAGTATTAAGCA 57.351 33.333 5.75 0.00 38.49 3.91
4552 5575 9.649167 TGACAGAAAAAGGTACTAGTATTAAGC 57.351 33.333 5.75 0.00 38.49 3.09
4556 5579 9.930693 CTCTTGACAGAAAAAGGTACTAGTATT 57.069 33.333 5.75 0.00 38.49 1.89
4557 5580 9.310449 TCTCTTGACAGAAAAAGGTACTAGTAT 57.690 33.333 5.75 0.00 38.49 2.12
4558 5581 8.701908 TCTCTTGACAGAAAAAGGTACTAGTA 57.298 34.615 0.00 0.00 38.49 1.82
4559 5582 7.598759 TCTCTTGACAGAAAAAGGTACTAGT 57.401 36.000 0.00 0.00 38.49 2.57
4596 5702 1.349259 GGTAACTACTGCACGCGTGG 61.349 60.000 37.47 25.17 0.00 4.94
4599 5705 2.117137 CTATGGTAACTACTGCACGCG 58.883 52.381 3.53 3.53 37.61 6.01
4609 5715 7.863901 AGGAAGATGCTTATCTATGGTAACT 57.136 36.000 0.00 0.00 37.61 2.24
4622 5728 7.178983 TGGAACATTTCAAATAGGAAGATGCTT 59.821 33.333 0.00 0.00 0.00 3.91
4633 5739 9.921637 GTTGTATTCCTTGGAACATTTCAAATA 57.078 29.630 4.00 0.00 39.30 1.40
4634 5740 8.650490 AGTTGTATTCCTTGGAACATTTCAAAT 58.350 29.630 4.00 3.52 39.30 2.32
4647 5753 6.925211 TCTGTGTAGAGAGTTGTATTCCTTG 58.075 40.000 0.00 0.00 0.00 3.61
4649 5755 6.722129 AGTTCTGTGTAGAGAGTTGTATTCCT 59.278 38.462 0.00 0.00 33.70 3.36
4663 5769 6.088217 CACTCGTATGAAACAGTTCTGTGTAG 59.912 42.308 6.22 0.00 34.60 2.74
4664 5770 5.918576 CACTCGTATGAAACAGTTCTGTGTA 59.081 40.000 6.22 0.00 34.60 2.90
4665 5771 4.745125 CACTCGTATGAAACAGTTCTGTGT 59.255 41.667 6.22 0.41 34.60 3.72
4666 5772 4.376413 GCACTCGTATGAAACAGTTCTGTG 60.376 45.833 6.22 0.00 34.60 3.66
4669 5775 3.741344 GTGCACTCGTATGAAACAGTTCT 59.259 43.478 10.32 0.00 34.60 3.01
4684 5790 7.801716 TTTATCCAATTAGGTATGTGCACTC 57.198 36.000 19.41 8.43 39.02 3.51
4700 5806 9.629878 TTTGTTCAGGTACTACTTTTTATCCAA 57.370 29.630 0.00 0.00 36.02 3.53
4857 6046 6.375455 AGTCACAGTTCAGAGTTTTTCATGTT 59.625 34.615 0.00 0.00 0.00 2.71
4858 6047 5.882557 AGTCACAGTTCAGAGTTTTTCATGT 59.117 36.000 0.00 0.00 0.00 3.21
4964 6154 5.864474 TGCGCGGACAAAAACATATAATTTT 59.136 32.000 8.83 0.00 0.00 1.82
5024 6214 1.135721 GCCCTTCCTGTTTCATCATGC 59.864 52.381 0.00 0.00 0.00 4.06
5103 6293 6.913873 TGAAGAACTTAACACAACCACTAC 57.086 37.500 0.00 0.00 0.00 2.73
5149 6339 4.507710 TGGTACTCATTCTCAATCTGTGC 58.492 43.478 0.00 0.00 0.00 4.57
5205 6395 1.977594 CTGCCCAACGGACATAACGC 61.978 60.000 0.00 0.00 34.00 4.84
5524 6715 5.125097 CCATCAGACTTTTCTTTCCATCAGG 59.875 44.000 0.00 0.00 0.00 3.86
5563 6754 9.729550 TCATTACCATATATAGGGTAGCTGAAT 57.270 33.333 24.25 16.44 42.72 2.57
5689 6880 7.279981 GCTGGGAAACTTTTGAAGTGTTTTTAT 59.720 33.333 0.00 0.00 41.91 1.40
5848 7039 5.869579 AGCATACCTTGACTCTCTTTGAAA 58.130 37.500 0.00 0.00 0.00 2.69
6131 7324 6.201517 CACACACTTCAATTCTGTTTCGAAT 58.798 36.000 0.00 0.00 35.23 3.34
6213 7406 0.758685 TTGGGTGCCAGTTGGAAAGG 60.759 55.000 1.45 0.00 37.39 3.11
6335 7528 3.105959 AGAGGTTATGCCATTTGCCTT 57.894 42.857 0.00 0.00 40.61 4.35
6639 7832 9.443323 TTTAAGCAATACAGTTAGCATAGTGAA 57.557 29.630 0.50 0.00 0.00 3.18
6718 7911 2.636768 TACATGTGCTCGTGACTCAG 57.363 50.000 14.62 0.00 34.90 3.35
6826 8019 4.252073 TGTGCATTTGTTGTTGCTTTCTT 58.748 34.783 0.00 0.00 39.60 2.52
6827 8020 3.859443 TGTGCATTTGTTGTTGCTTTCT 58.141 36.364 0.00 0.00 39.60 2.52
6951 8144 3.252979 CATGACTCCCATGCACACA 57.747 52.632 0.00 0.00 45.25 3.72
7300 8500 9.533253 GTGCAATTATGATAAAATGGCTAGTTT 57.467 29.630 0.18 0.18 34.84 2.66
7471 8671 9.993454 CATCTCTATCTCACATTCCAAATTAGA 57.007 33.333 0.00 0.00 0.00 2.10
7511 8711 8.143835 TGCGATTATTCTGTCAGATCAGATTAA 58.856 33.333 2.68 13.70 42.84 1.40
7512 8712 7.661040 TGCGATTATTCTGTCAGATCAGATTA 58.339 34.615 2.68 3.44 42.84 1.75
7516 8716 4.685165 CCTGCGATTATTCTGTCAGATCAG 59.315 45.833 2.68 3.45 36.85 2.90
7529 8729 6.539173 TCCATATAAACCAACCTGCGATTAT 58.461 36.000 0.00 0.00 0.00 1.28
7544 8744 7.802117 AGATTCGTTTCCCTTCTCCATATAAA 58.198 34.615 0.00 0.00 0.00 1.40
7563 8763 6.951256 TGATTCTTCTTGTGTGTAGATTCG 57.049 37.500 0.00 0.00 0.00 3.34
7574 8774 4.883585 TCAACACTGCTTGATTCTTCTTGT 59.116 37.500 0.00 0.00 0.00 3.16
7584 8784 2.880268 CTGTCCATTCAACACTGCTTGA 59.120 45.455 0.00 0.00 0.00 3.02
7610 8810 7.765695 AAGTGGATGATATGTCAAACTGTTT 57.234 32.000 0.00 0.00 38.01 2.83
7615 8815 7.336931 ACCAAGTAAGTGGATGATATGTCAAAC 59.663 37.037 0.00 0.00 41.65 2.93
7680 8880 5.890334 ACTGTTGTAAAGTGTGGACATTTG 58.110 37.500 0.00 0.00 0.00 2.32
7892 9092 1.471327 GCTGAGAGTTGGAGCTAGCTG 60.471 57.143 24.99 4.34 0.00 4.24
7950 9150 4.191544 TGCCAGTGAGATATTGCTTGTAC 58.808 43.478 0.00 0.00 0.00 2.90
7987 9188 4.036027 GCTGTGGAATGTGATACCTTCATG 59.964 45.833 0.00 0.00 36.54 3.07
8116 9317 1.467556 CGACGAGAGCTCATTCACGC 61.468 60.000 17.77 8.47 35.08 5.34
8165 9366 0.807496 GGCACCGTAGACGTACTTCT 59.193 55.000 7.11 7.11 37.74 2.85
8204 9405 0.517316 AACTCGCGAACTCAATTGCC 59.483 50.000 11.33 0.00 0.00 4.52
8216 9417 1.502231 CAGGATTCCCATAACTCGCG 58.498 55.000 0.00 0.00 33.88 5.87
8579 9782 5.864418 AGCAACGGATCTGTATAACCTAA 57.136 39.130 7.83 0.00 0.00 2.69
8641 9844 6.484288 AGAATGATGTATCTGTTGGTTTGGA 58.516 36.000 0.00 0.00 0.00 3.53
8668 9871 7.004086 GGGATCCTGTATATTTTCCATTCACA 58.996 38.462 12.58 0.00 0.00 3.58
8709 9912 4.946784 GGTACAAAAGCGAACATGAGAT 57.053 40.909 0.00 0.00 0.00 2.75
8750 9953 2.432444 TCCAATCATCGTTTCACCCAC 58.568 47.619 0.00 0.00 0.00 4.61
8806 10009 3.159213 TCAAACCCTCTCCGTAGTACA 57.841 47.619 0.38 0.00 0.00 2.90
8810 10013 3.679824 AAGTTCAAACCCTCTCCGTAG 57.320 47.619 0.00 0.00 0.00 3.51
8854 10057 2.022129 GGCTACATCGCGAATCCGG 61.022 63.158 15.24 0.00 36.06 5.14
8924 10127 4.876081 GCTGCGGCGAAGATTGCG 62.876 66.667 21.50 0.00 0.00 4.85
8926 10129 2.817423 GAGGCTGCGGCGAAGATTG 61.817 63.158 21.50 0.00 39.81 2.67
8941 10144 2.121538 TCGTCAGCGGAGGATGAGG 61.122 63.158 5.10 0.00 43.69 3.86
8953 10156 0.612174 TCTGAAGGGAGGGTCGTCAG 60.612 60.000 0.00 0.00 40.42 3.51
8980 10183 2.579410 TGCTTTAGGGTTGGGAGTTC 57.421 50.000 0.00 0.00 0.00 3.01
9006 10209 2.344203 CCTCACCGGAGAACTCGCT 61.344 63.158 9.46 0.00 44.26 4.93
9057 10260 3.126000 CGGAAGTTGCATTCTCTCTTTCC 59.874 47.826 0.36 0.14 0.00 3.13
9079 10283 0.324275 TTAAGCCCAAGCCCATGACC 60.324 55.000 0.00 0.00 41.25 4.02
9099 10303 1.434696 CTTGCCCATGCTTAAGCGG 59.565 57.895 21.97 17.55 45.83 5.52
9122 10326 5.757850 AGGTTTTTGACTGCTTCTAACAG 57.242 39.130 0.00 0.00 41.08 3.16
9135 10339 0.035820 ATCGCGGGCTAGGTTTTTGA 60.036 50.000 6.13 0.00 0.00 2.69
9149 10353 3.952675 CCATTCCGGCCAATCGCG 61.953 66.667 2.24 0.00 38.94 5.87
9150 10354 2.828549 ACCATTCCGGCCAATCGC 60.829 61.111 2.24 0.00 39.03 4.58
9165 10369 3.228759 TATAGCCCACGCCGGACC 61.229 66.667 5.05 0.00 36.56 4.46
9167 10371 3.598715 CGTATAGCCCACGCCGGA 61.599 66.667 5.05 0.00 36.56 5.14
9177 10381 2.661866 CGTGCCTGGCCGTATAGC 60.662 66.667 17.53 0.00 0.00 2.97
9206 10411 0.036164 ATGTAGTTTGGCGTGGCTGA 59.964 50.000 0.00 0.00 0.00 4.26
9269 10474 4.584029 AATTAGTGAGTTGCGATGTTCG 57.416 40.909 0.00 0.00 43.89 3.95
9270 10475 7.290857 TCTTAATTAGTGAGTTGCGATGTTC 57.709 36.000 0.00 0.00 0.00 3.18
9271 10476 7.387948 ACTTCTTAATTAGTGAGTTGCGATGTT 59.612 33.333 0.00 0.00 0.00 2.71
9272 10477 6.874134 ACTTCTTAATTAGTGAGTTGCGATGT 59.126 34.615 0.00 0.00 0.00 3.06
9273 10478 7.295952 ACTTCTTAATTAGTGAGTTGCGATG 57.704 36.000 0.00 0.00 0.00 3.84
9274 10479 8.251721 AGTACTTCTTAATTAGTGAGTTGCGAT 58.748 33.333 0.00 0.00 0.00 4.58
9275 10480 7.600065 AGTACTTCTTAATTAGTGAGTTGCGA 58.400 34.615 0.00 0.00 0.00 5.10
9276 10481 7.813852 AGTACTTCTTAATTAGTGAGTTGCG 57.186 36.000 0.00 0.00 0.00 4.85
9277 10482 9.425577 AGAAGTACTTCTTAATTAGTGAGTTGC 57.574 33.333 28.73 1.66 46.95 4.17
9293 10498 9.783256 GAGAGTAATCTTTGAGAGAAGTACTTC 57.217 37.037 25.24 25.24 38.45 3.01
9294 10499 9.303116 TGAGAGTAATCTTTGAGAGAAGTACTT 57.697 33.333 8.13 8.13 38.45 2.24
9295 10500 8.871629 TGAGAGTAATCTTTGAGAGAAGTACT 57.128 34.615 0.00 0.00 39.84 2.73
9296 10501 9.730420 GATGAGAGTAATCTTTGAGAGAAGTAC 57.270 37.037 0.00 0.00 38.06 2.73
9297 10502 9.693739 AGATGAGAGTAATCTTTGAGAGAAGTA 57.306 33.333 0.00 0.00 38.06 2.24
9298 10503 8.593945 AGATGAGAGTAATCTTTGAGAGAAGT 57.406 34.615 0.00 0.00 38.06 3.01
9319 10524 9.694520 CGTCACTTTTCACAATCTAATAAGATG 57.305 33.333 0.00 0.00 41.81 2.90
9320 10525 8.391106 GCGTCACTTTTCACAATCTAATAAGAT 58.609 33.333 0.00 0.00 44.67 2.40
9321 10526 7.411480 CGCGTCACTTTTCACAATCTAATAAGA 60.411 37.037 0.00 0.00 35.80 2.10
9322 10527 6.678663 CGCGTCACTTTTCACAATCTAATAAG 59.321 38.462 0.00 0.00 0.00 1.73
9323 10528 6.530567 CGCGTCACTTTTCACAATCTAATAA 58.469 36.000 0.00 0.00 0.00 1.40
9324 10529 5.445407 GCGCGTCACTTTTCACAATCTAATA 60.445 40.000 8.43 0.00 0.00 0.98
9325 10530 4.669197 GCGCGTCACTTTTCACAATCTAAT 60.669 41.667 8.43 0.00 0.00 1.73
9326 10531 3.363575 GCGCGTCACTTTTCACAATCTAA 60.364 43.478 8.43 0.00 0.00 2.10
9327 10532 2.156891 GCGCGTCACTTTTCACAATCTA 59.843 45.455 8.43 0.00 0.00 1.98
9328 10533 1.069906 GCGCGTCACTTTTCACAATCT 60.070 47.619 8.43 0.00 0.00 2.40
9329 10534 1.069906 AGCGCGTCACTTTTCACAATC 60.070 47.619 8.43 0.00 0.00 2.67
9330 10535 0.944386 AGCGCGTCACTTTTCACAAT 59.056 45.000 8.43 0.00 0.00 2.71
9331 10536 0.027455 CAGCGCGTCACTTTTCACAA 59.973 50.000 8.43 0.00 0.00 3.33
9332 10537 1.641140 CAGCGCGTCACTTTTCACA 59.359 52.632 8.43 0.00 0.00 3.58
9333 10538 1.722507 GCAGCGCGTCACTTTTCAC 60.723 57.895 8.43 0.00 0.00 3.18
9334 10539 1.506309 ATGCAGCGCGTCACTTTTCA 61.506 50.000 8.43 0.00 0.00 2.69
9335 10540 1.061799 CATGCAGCGCGTCACTTTTC 61.062 55.000 8.43 0.00 0.00 2.29
9336 10541 1.081906 CATGCAGCGCGTCACTTTT 60.082 52.632 8.43 0.00 0.00 2.27
9337 10542 2.253758 ACATGCAGCGCGTCACTTT 61.254 52.632 8.43 0.00 0.00 2.66
9338 10543 2.666190 ACATGCAGCGCGTCACTT 60.666 55.556 8.43 0.00 0.00 3.16
9339 10544 3.417224 CACATGCAGCGCGTCACT 61.417 61.111 8.43 0.00 0.00 3.41
9350 10555 0.171903 GGGACAAGTGATGCACATGC 59.828 55.000 0.00 0.00 36.67 4.06
9351 10556 1.830279 AGGGACAAGTGATGCACATG 58.170 50.000 0.00 0.00 38.74 3.21
9352 10557 3.457380 AGATAGGGACAAGTGATGCACAT 59.543 43.478 0.00 0.00 36.74 3.21
9353 10558 2.840038 AGATAGGGACAAGTGATGCACA 59.160 45.455 0.00 0.00 36.74 4.57
9354 10559 3.201290 CAGATAGGGACAAGTGATGCAC 58.799 50.000 0.00 0.00 34.10 4.57
9355 10560 2.171237 CCAGATAGGGACAAGTGATGCA 59.829 50.000 0.00 0.00 0.00 3.96
9356 10561 2.435805 TCCAGATAGGGACAAGTGATGC 59.564 50.000 0.00 0.00 38.24 3.91
9357 10562 4.163078 ACTTCCAGATAGGGACAAGTGATG 59.837 45.833 0.00 0.00 36.46 3.07
9358 10563 4.366267 ACTTCCAGATAGGGACAAGTGAT 58.634 43.478 0.00 0.00 36.46 3.06
9359 10564 3.791320 ACTTCCAGATAGGGACAAGTGA 58.209 45.455 0.00 0.00 36.46 3.41
9360 10565 4.559862 AACTTCCAGATAGGGACAAGTG 57.440 45.455 0.00 0.00 36.46 3.16
9361 10566 4.846940 AGAAACTTCCAGATAGGGACAAGT 59.153 41.667 0.00 0.00 36.46 3.16
9362 10567 5.188751 AGAGAAACTTCCAGATAGGGACAAG 59.811 44.000 0.00 0.00 36.46 3.16
9363 10568 5.094387 AGAGAAACTTCCAGATAGGGACAA 58.906 41.667 0.00 0.00 36.46 3.18
9364 10569 4.689062 AGAGAAACTTCCAGATAGGGACA 58.311 43.478 0.00 0.00 36.46 4.02
9365 10570 5.685520 AAGAGAAACTTCCAGATAGGGAC 57.314 43.478 0.00 0.00 36.46 4.46
9366 10571 6.704056 AAAAGAGAAACTTCCAGATAGGGA 57.296 37.500 0.00 0.00 37.93 4.20
9412 10617 9.038803 GGACGAACGGTTTAAGAGATAAAATAT 57.961 33.333 0.00 0.00 35.33 1.28
9413 10618 8.034215 TGGACGAACGGTTTAAGAGATAAAATA 58.966 33.333 0.00 0.00 35.33 1.40
9414 10619 6.875195 TGGACGAACGGTTTAAGAGATAAAAT 59.125 34.615 0.00 0.00 35.33 1.82
9415 10620 6.222389 TGGACGAACGGTTTAAGAGATAAAA 58.778 36.000 0.00 0.00 35.33 1.52
9416 10621 5.782047 TGGACGAACGGTTTAAGAGATAAA 58.218 37.500 0.00 0.00 0.00 1.40
9417 10622 5.389859 TGGACGAACGGTTTAAGAGATAA 57.610 39.130 0.00 0.00 0.00 1.75
9418 10623 5.389859 TTGGACGAACGGTTTAAGAGATA 57.610 39.130 0.00 0.00 0.00 1.98
9419 10624 3.947910 TGGACGAACGGTTTAAGAGAT 57.052 42.857 0.00 0.00 0.00 2.75
9420 10625 3.731652 TTGGACGAACGGTTTAAGAGA 57.268 42.857 0.00 0.00 0.00 3.10
9421 10626 4.689345 AGATTTGGACGAACGGTTTAAGAG 59.311 41.667 0.00 0.00 0.00 2.85
9422 10627 4.634199 AGATTTGGACGAACGGTTTAAGA 58.366 39.130 0.00 0.00 0.00 2.10
9423 10628 4.449743 TGAGATTTGGACGAACGGTTTAAG 59.550 41.667 0.00 0.00 0.00 1.85
9424 10629 4.378774 TGAGATTTGGACGAACGGTTTAA 58.621 39.130 0.00 0.00 0.00 1.52
9425 10630 3.992643 TGAGATTTGGACGAACGGTTTA 58.007 40.909 0.00 0.00 0.00 2.01
9426 10631 2.841215 TGAGATTTGGACGAACGGTTT 58.159 42.857 0.00 0.00 0.00 3.27
9427 10632 2.536761 TGAGATTTGGACGAACGGTT 57.463 45.000 0.00 0.00 0.00 4.44
9428 10633 2.536761 TTGAGATTTGGACGAACGGT 57.463 45.000 0.00 0.00 0.00 4.83
9429 10634 2.095919 GGTTTGAGATTTGGACGAACGG 60.096 50.000 0.00 0.00 0.00 4.44
9430 10635 2.411031 CGGTTTGAGATTTGGACGAACG 60.411 50.000 0.00 0.00 0.00 3.95
9431 10636 2.546789 ACGGTTTGAGATTTGGACGAAC 59.453 45.455 0.00 0.00 0.00 3.95
9432 10637 2.841215 ACGGTTTGAGATTTGGACGAA 58.159 42.857 0.00 0.00 0.00 3.85
9433 10638 2.536761 ACGGTTTGAGATTTGGACGA 57.463 45.000 0.00 0.00 0.00 4.20
9434 10639 3.619233 AAACGGTTTGAGATTTGGACG 57.381 42.857 5.12 0.00 0.00 4.79
9435 10640 4.927422 TGAAAACGGTTTGAGATTTGGAC 58.073 39.130 1.45 0.00 0.00 4.02
9436 10641 5.561919 CGATGAAAACGGTTTGAGATTTGGA 60.562 40.000 1.45 0.00 0.00 3.53
9437 10642 4.616802 CGATGAAAACGGTTTGAGATTTGG 59.383 41.667 1.45 0.00 0.00 3.28
9438 10643 5.212194 ACGATGAAAACGGTTTGAGATTTG 58.788 37.500 1.45 0.00 35.94 2.32
9439 10644 5.432885 ACGATGAAAACGGTTTGAGATTT 57.567 34.783 1.45 0.00 35.94 2.17
9440 10645 5.212194 CAACGATGAAAACGGTTTGAGATT 58.788 37.500 1.45 0.00 35.94 2.40
9441 10646 4.320202 CCAACGATGAAAACGGTTTGAGAT 60.320 41.667 1.45 0.00 35.94 2.75
9442 10647 3.002862 CCAACGATGAAAACGGTTTGAGA 59.997 43.478 1.45 0.00 35.94 3.27
9443 10648 3.002862 TCCAACGATGAAAACGGTTTGAG 59.997 43.478 1.45 0.00 35.94 3.02
9444 10649 2.943690 TCCAACGATGAAAACGGTTTGA 59.056 40.909 1.45 0.00 35.94 2.69
9445 10650 3.341857 TCCAACGATGAAAACGGTTTG 57.658 42.857 1.45 0.00 35.94 2.93
9446 10651 4.036971 TGAATCCAACGATGAAAACGGTTT 59.963 37.500 0.00 0.00 35.94 3.27
9447 10652 3.566322 TGAATCCAACGATGAAAACGGTT 59.434 39.130 0.00 0.00 35.94 4.44
9448 10653 3.142951 TGAATCCAACGATGAAAACGGT 58.857 40.909 0.00 0.00 35.94 4.83
9449 10654 3.822594 TGAATCCAACGATGAAAACGG 57.177 42.857 0.00 0.00 35.94 4.44
9450 10655 4.722194 ACATGAATCCAACGATGAAAACG 58.278 39.130 0.00 0.00 38.45 3.60
9451 10656 5.698832 TGACATGAATCCAACGATGAAAAC 58.301 37.500 0.00 0.00 0.00 2.43
9452 10657 5.956068 TGACATGAATCCAACGATGAAAA 57.044 34.783 0.00 0.00 0.00 2.29
9453 10658 5.704978 TCTTGACATGAATCCAACGATGAAA 59.295 36.000 0.00 0.00 0.00 2.69
9454 10659 5.244755 TCTTGACATGAATCCAACGATGAA 58.755 37.500 0.00 0.00 0.00 2.57
9455 10660 4.831107 TCTTGACATGAATCCAACGATGA 58.169 39.130 0.00 0.00 0.00 2.92
9456 10661 5.526479 AGATCTTGACATGAATCCAACGATG 59.474 40.000 0.00 0.00 0.00 3.84
9457 10662 5.678583 AGATCTTGACATGAATCCAACGAT 58.321 37.500 0.00 3.90 0.00 3.73
9458 10663 5.089970 AGATCTTGACATGAATCCAACGA 57.910 39.130 0.00 0.00 0.00 3.85
9459 10664 5.808042 AAGATCTTGACATGAATCCAACG 57.192 39.130 7.30 0.00 0.00 4.10
9460 10665 9.912634 TTTTTAAGATCTTGACATGAATCCAAC 57.087 29.630 18.47 0.00 0.00 3.77
9461 10666 9.912634 GTTTTTAAGATCTTGACATGAATCCAA 57.087 29.630 18.47 0.00 0.00 3.53
9462 10667 9.300681 AGTTTTTAAGATCTTGACATGAATCCA 57.699 29.630 18.47 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.