Multiple sequence alignment - TraesCS1D01G266200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G266200 chr1D 100.000 5120 0 0 1 5120 362014215 362009096 0.000000e+00 9455
1 TraesCS1D01G266200 chr1D 86.998 1046 83 20 797 1819 362132773 362131758 0.000000e+00 1129
2 TraesCS1D01G266200 chr1D 89.487 390 20 7 2889 3257 445232632 445232243 1.670000e-129 473
3 TraesCS1D01G266200 chr1D 95.122 246 10 2 405 650 13352140 13352383 2.240000e-103 387
4 TraesCS1D01G266200 chr1D 77.778 612 104 20 1127 1710 476872643 476872036 1.060000e-91 348
5 TraesCS1D01G266200 chr1B 94.934 1441 49 10 650 2076 484465582 484464152 0.000000e+00 2235
6 TraesCS1D01G266200 chr1B 93.423 1186 72 5 3272 4453 484464001 484462818 0.000000e+00 1753
7 TraesCS1D01G266200 chr1B 88.498 939 101 6 3520 4453 484691125 484690189 0.000000e+00 1129
8 TraesCS1D01G266200 chr1B 86.915 1047 84 21 797 1819 484693057 484692040 0.000000e+00 1125
9 TraesCS1D01G266200 chr1B 83.452 701 73 16 4446 5120 484462777 484462094 3.390000e-171 612
10 TraesCS1D01G266200 chr1B 75.980 612 107 24 1131 1710 664317874 664318477 3.900000e-71 279
11 TraesCS1D01G266200 chr1B 93.333 165 9 2 2097 2261 484464166 484464004 5.120000e-60 243
12 TraesCS1D01G266200 chr1B 85.590 229 24 5 182 403 484467238 484467012 1.110000e-56 231
13 TraesCS1D01G266200 chr1B 91.753 97 8 0 12 108 484467407 484467311 8.940000e-28 135
14 TraesCS1D01G266200 chr1B 85.294 102 9 4 4446 4542 484690148 484690048 3.260000e-17 100
15 TraesCS1D01G266200 chr1A 94.142 1451 52 19 650 2076 461524385 461522944 0.000000e+00 2178
16 TraesCS1D01G266200 chr1A 96.078 867 30 3 3401 4263 461522722 461521856 0.000000e+00 1410
17 TraesCS1D01G266200 chr1A 88.584 946 71 11 797 1726 461644164 461643240 0.000000e+00 1114
18 TraesCS1D01G266200 chr1A 85.679 810 103 12 3520 4321 461642418 461641614 0.000000e+00 841
19 TraesCS1D01G266200 chr1A 90.196 357 34 1 4263 4619 461521789 461521434 1.000000e-126 464
20 TraesCS1D01G266200 chr1A 85.158 411 49 7 1 403 461524803 461524397 1.330000e-110 411
21 TraesCS1D01G266200 chr1A 95.102 245 10 2 406 650 427351543 427351785 8.040000e-103 385
22 TraesCS1D01G266200 chr1A 93.258 89 2 1 2097 2181 461522958 461522870 1.500000e-25 128
23 TraesCS1D01G266200 chr5D 90.357 1037 67 20 2257 3271 355463347 355462322 0.000000e+00 1330
24 TraesCS1D01G266200 chr5D 89.692 1038 53 19 2257 3271 254594520 254593514 0.000000e+00 1275
25 TraesCS1D01G266200 chr5D 91.383 882 43 8 2247 3123 483581785 483580932 0.000000e+00 1177
26 TraesCS1D01G266200 chr3D 90.294 1020 65 18 2270 3263 113454442 113455453 0.000000e+00 1304
27 TraesCS1D01G266200 chr3D 91.429 875 62 10 2253 3123 156729295 156728430 0.000000e+00 1188
28 TraesCS1D01G266200 chr3D 89.223 399 17 13 2890 3265 327722323 327721928 4.640000e-130 475
29 TraesCS1D01G266200 chr3D 86.420 405 25 5 2890 3272 495305905 495306301 2.850000e-112 416
30 TraesCS1D01G266200 chr3D 95.473 243 9 2 407 649 532558113 532557873 2.240000e-103 387
31 TraesCS1D01G266200 chr3D 93.478 92 6 0 1442 1533 326120752 326120661 2.490000e-28 137
32 TraesCS1D01G266200 chr7D 90.173 1038 47 16 2253 3265 568366003 568364996 0.000000e+00 1301
33 TraesCS1D01G266200 chr7D 89.622 1031 57 11 2260 3268 554422563 554421561 0.000000e+00 1266
34 TraesCS1D01G266200 chr7D 88.972 399 22 2 2889 3265 36941745 36941347 1.670000e-129 473
35 TraesCS1D01G266200 chr2A 89.335 1022 90 14 2253 3269 561022026 561021019 0.000000e+00 1266
36 TraesCS1D01G266200 chr2A 95.102 245 10 2 406 650 573237552 573237794 8.040000e-103 385
37 TraesCS1D01G266200 chr4D 89.448 1033 55 16 2257 3265 40798942 40799944 0.000000e+00 1254
38 TraesCS1D01G266200 chr4D 88.395 1034 56 19 2258 3265 73990700 73989705 0.000000e+00 1186
39 TraesCS1D01G266200 chr4D 88.395 405 20 12 2889 3269 35124110 35123709 3.610000e-126 462
40 TraesCS1D01G266200 chr4D 95.510 245 9 2 407 651 115044520 115044278 1.730000e-104 390
41 TraesCS1D01G266200 chr6D 88.366 404 23 4 2889 3269 390782163 390782565 1.000000e-126 464
42 TraesCS1D01G266200 chr6D 84.221 507 32 12 2809 3268 62137324 62137829 2.810000e-122 449
43 TraesCS1D01G266200 chr4B 87.871 404 24 7 2889 3268 377799436 377799838 7.820000e-123 451
44 TraesCS1D01G266200 chr2B 87.841 403 26 8 2889 3269 665368574 665368975 7.820000e-123 451
45 TraesCS1D01G266200 chr2B 95.122 246 10 2 407 652 135101419 135101662 2.240000e-103 387
46 TraesCS1D01G266200 chr2D 88.830 376 18 6 2915 3267 518803187 518803561 1.690000e-119 440
47 TraesCS1D01G266200 chr2D 96.311 244 7 2 407 650 541547530 541547289 2.870000e-107 399
48 TraesCS1D01G266200 chr3B 85.786 401 33 7 2889 3266 594444490 594444889 2.220000e-108 403
49 TraesCS1D01G266200 chr6B 95.492 244 9 2 407 650 347227154 347227395 6.220000e-104 388
50 TraesCS1D01G266200 chr5A 93.103 261 14 4 407 666 707705424 707705167 3.740000e-101 379
51 TraesCS1D01G266200 chr3A 92.391 92 7 0 1442 1533 438810543 438810634 1.160000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G266200 chr1D 362009096 362014215 5119 True 9455.000000 9455 100.000000 1 5120 1 chr1D.!!$R1 5119
1 TraesCS1D01G266200 chr1D 362131758 362132773 1015 True 1129.000000 1129 86.998000 797 1819 1 chr1D.!!$R2 1022
2 TraesCS1D01G266200 chr1D 476872036 476872643 607 True 348.000000 348 77.778000 1127 1710 1 chr1D.!!$R4 583
3 TraesCS1D01G266200 chr1B 484462094 484467407 5313 True 868.166667 2235 90.414167 12 5120 6 chr1B.!!$R1 5108
4 TraesCS1D01G266200 chr1B 484690048 484693057 3009 True 784.666667 1129 86.902333 797 4542 3 chr1B.!!$R2 3745
5 TraesCS1D01G266200 chr1B 664317874 664318477 603 False 279.000000 279 75.980000 1131 1710 1 chr1B.!!$F1 579
6 TraesCS1D01G266200 chr1A 461641614 461644164 2550 True 977.500000 1114 87.131500 797 4321 2 chr1A.!!$R2 3524
7 TraesCS1D01G266200 chr1A 461521434 461524803 3369 True 918.200000 2178 91.766400 1 4619 5 chr1A.!!$R1 4618
8 TraesCS1D01G266200 chr5D 355462322 355463347 1025 True 1330.000000 1330 90.357000 2257 3271 1 chr5D.!!$R2 1014
9 TraesCS1D01G266200 chr5D 254593514 254594520 1006 True 1275.000000 1275 89.692000 2257 3271 1 chr5D.!!$R1 1014
10 TraesCS1D01G266200 chr5D 483580932 483581785 853 True 1177.000000 1177 91.383000 2247 3123 1 chr5D.!!$R3 876
11 TraesCS1D01G266200 chr3D 113454442 113455453 1011 False 1304.000000 1304 90.294000 2270 3263 1 chr3D.!!$F1 993
12 TraesCS1D01G266200 chr3D 156728430 156729295 865 True 1188.000000 1188 91.429000 2253 3123 1 chr3D.!!$R1 870
13 TraesCS1D01G266200 chr7D 568364996 568366003 1007 True 1301.000000 1301 90.173000 2253 3265 1 chr7D.!!$R3 1012
14 TraesCS1D01G266200 chr7D 554421561 554422563 1002 True 1266.000000 1266 89.622000 2260 3268 1 chr7D.!!$R2 1008
15 TraesCS1D01G266200 chr2A 561021019 561022026 1007 True 1266.000000 1266 89.335000 2253 3269 1 chr2A.!!$R1 1016
16 TraesCS1D01G266200 chr4D 40798942 40799944 1002 False 1254.000000 1254 89.448000 2257 3265 1 chr4D.!!$F1 1008
17 TraesCS1D01G266200 chr4D 73989705 73990700 995 True 1186.000000 1186 88.395000 2258 3265 1 chr4D.!!$R2 1007
18 TraesCS1D01G266200 chr6D 62137324 62137829 505 False 449.000000 449 84.221000 2809 3268 1 chr6D.!!$F1 459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 643 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.0 31.93 24.81 0.00 3.32 F
2085 3783 0.245539 GCACGGTAGCTACACTCCAA 59.754 55.0 24.75 0.00 0.00 3.53 F
2881 4627 0.035317 TGGCAACTGCAGTAGACCAG 59.965 55.0 22.01 7.33 44.36 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 3982 0.118346 AGTCCCCAGACACCCATACA 59.882 55.0 0.00 0.00 46.15 2.29 R
2890 4636 0.035317 CTGGTCTACTGCAGTTGCCA 59.965 55.0 28.04 28.04 41.18 4.92 R
4459 6496 0.239347 CGTGGAAAGCAAGCTTGGAG 59.761 55.0 27.10 3.04 36.26 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.757894 AGTCCGTCTGGGTCTGATAT 57.242 50.000 0.00 0.00 32.58 1.63
26 27 2.031870 CCGTCTGGGTCTGATATCACA 58.968 52.381 0.00 0.00 0.00 3.58
104 105 5.163152 GGATACACTTGGGGAAGAAGATGAT 60.163 44.000 0.00 0.00 0.00 2.45
108 109 3.133721 ACTTGGGGAAGAAGATGATCTCG 59.866 47.826 0.00 0.00 0.00 4.04
109 110 1.414181 TGGGGAAGAAGATGATCTCGC 59.586 52.381 0.00 0.00 0.00 5.03
110 111 1.604185 GGGGAAGAAGATGATCTCGCG 60.604 57.143 0.00 0.00 0.00 5.87
111 112 1.338337 GGGAAGAAGATGATCTCGCGA 59.662 52.381 9.26 9.26 0.00 5.87
113 114 2.292016 GGAAGAAGATGATCTCGCGAGA 59.708 50.000 38.22 38.22 42.37 4.04
144 145 0.676782 GATTACAAGCCACCGCCACT 60.677 55.000 0.00 0.00 34.57 4.00
149 150 3.731766 AAGCCACCGCCACTGGTTT 62.732 57.895 0.00 0.00 41.38 3.27
180 205 1.487976 CAGGATAGCTTGCTCCCTTCA 59.512 52.381 11.90 0.00 31.49 3.02
261 288 2.708216 TCACTGGTTGCACAGAAAGA 57.292 45.000 11.03 3.76 40.97 2.52
263 290 3.554934 TCACTGGTTGCACAGAAAGATT 58.445 40.909 11.03 0.00 40.97 2.40
269 296 4.523943 TGGTTGCACAGAAAGATTGCTAAT 59.476 37.500 0.00 0.00 37.16 1.73
271 298 6.377996 TGGTTGCACAGAAAGATTGCTAATAT 59.622 34.615 0.00 0.00 37.16 1.28
272 299 6.694411 GGTTGCACAGAAAGATTGCTAATATG 59.306 38.462 0.00 0.00 37.16 1.78
274 301 7.395190 TGCACAGAAAGATTGCTAATATGTT 57.605 32.000 0.00 0.00 37.16 2.71
277 304 6.630443 CACAGAAAGATTGCTAATATGTTCGC 59.370 38.462 0.00 0.00 0.00 4.70
279 306 6.849811 CAGAAAGATTGCTAATATGTTCGCTG 59.150 38.462 0.61 0.00 0.00 5.18
292 323 4.926860 TGTTCGCTGACATTTATCACAG 57.073 40.909 0.00 0.00 0.00 3.66
294 325 5.178061 TGTTCGCTGACATTTATCACAGAT 58.822 37.500 0.00 0.00 32.90 2.90
321 352 7.699391 CGAACTACTATAAAAATCTGACGTGGA 59.301 37.037 0.00 0.00 0.00 4.02
323 354 9.886132 AACTACTATAAAAATCTGACGTGGATT 57.114 29.630 0.00 0.00 35.25 3.01
328 359 4.864916 AAAATCTGACGTGGATTCGATG 57.135 40.909 11.99 0.00 32.96 3.84
329 360 3.801114 AATCTGACGTGGATTCGATGA 57.199 42.857 0.00 0.00 34.70 2.92
371 403 4.812476 CCGACGGCAGATTGCGGA 62.812 66.667 14.33 0.00 46.21 5.54
394 426 1.959085 CTGCAAAATCGCCCACAGT 59.041 52.632 0.00 0.00 0.00 3.55
397 429 1.284297 GCAAAATCGCCCACAGTTGC 61.284 55.000 0.00 0.00 35.13 4.17
399 431 1.112315 AAAATCGCCCACAGTTGCCA 61.112 50.000 0.00 0.00 0.00 4.92
403 435 1.599518 CGCCCACAGTTGCCAGTTA 60.600 57.895 0.00 0.00 0.00 2.24
404 436 1.577328 CGCCCACAGTTGCCAGTTAG 61.577 60.000 0.00 0.00 0.00 2.34
407 439 1.538047 CCACAGTTGCCAGTTAGCAT 58.462 50.000 0.00 0.00 43.64 3.79
408 440 1.470098 CCACAGTTGCCAGTTAGCATC 59.530 52.381 0.00 0.00 43.64 3.91
411 443 4.194640 CACAGTTGCCAGTTAGCATCTAT 58.805 43.478 0.00 0.00 43.64 1.98
413 445 5.235186 CACAGTTGCCAGTTAGCATCTATAC 59.765 44.000 0.00 0.00 43.64 1.47
414 446 4.752101 CAGTTGCCAGTTAGCATCTATACC 59.248 45.833 0.00 0.00 43.64 2.73
417 449 5.567037 TGCCAGTTAGCATCTATACCAAT 57.433 39.130 0.00 0.00 38.00 3.16
418 450 6.680148 TGCCAGTTAGCATCTATACCAATA 57.320 37.500 0.00 0.00 38.00 1.90
419 451 7.257790 TGCCAGTTAGCATCTATACCAATAT 57.742 36.000 0.00 0.00 38.00 1.28
420 452 8.374184 TGCCAGTTAGCATCTATACCAATATA 57.626 34.615 0.00 0.00 38.00 0.86
422 454 9.667107 GCCAGTTAGCATCTATACCAATATAAA 57.333 33.333 0.00 0.00 0.00 1.40
459 589 3.565482 GCAGATTCAAATAATCTCGGCCA 59.435 43.478 2.24 0.00 34.96 5.36
460 590 4.217118 GCAGATTCAAATAATCTCGGCCAT 59.783 41.667 2.24 0.00 34.96 4.40
461 591 5.618640 GCAGATTCAAATAATCTCGGCCATC 60.619 44.000 2.24 0.00 34.96 3.51
463 593 6.016860 CAGATTCAAATAATCTCGGCCATCAA 60.017 38.462 2.24 0.00 34.96 2.57
464 594 6.547141 AGATTCAAATAATCTCGGCCATCAAA 59.453 34.615 2.24 0.00 31.78 2.69
465 595 6.713762 TTCAAATAATCTCGGCCATCAAAT 57.286 33.333 2.24 0.00 0.00 2.32
466 596 6.317789 TCAAATAATCTCGGCCATCAAATC 57.682 37.500 2.24 0.00 0.00 2.17
467 597 5.827267 TCAAATAATCTCGGCCATCAAATCA 59.173 36.000 2.24 0.00 0.00 2.57
468 598 6.491062 TCAAATAATCTCGGCCATCAAATCAT 59.509 34.615 2.24 0.00 0.00 2.45
469 599 5.892160 ATAATCTCGGCCATCAAATCATG 57.108 39.130 2.24 0.00 0.00 3.07
470 600 2.715749 TCTCGGCCATCAAATCATGT 57.284 45.000 2.24 0.00 0.00 3.21
471 601 2.564771 TCTCGGCCATCAAATCATGTC 58.435 47.619 2.24 0.00 0.00 3.06
472 602 2.093021 TCTCGGCCATCAAATCATGTCA 60.093 45.455 2.24 0.00 0.00 3.58
473 603 2.684374 CTCGGCCATCAAATCATGTCAA 59.316 45.455 2.24 0.00 0.00 3.18
474 604 3.289836 TCGGCCATCAAATCATGTCAAT 58.710 40.909 2.24 0.00 0.00 2.57
476 606 3.551454 CGGCCATCAAATCATGTCAATCC 60.551 47.826 2.24 0.00 0.00 3.01
477 607 3.385433 GGCCATCAAATCATGTCAATCCA 59.615 43.478 0.00 0.00 0.00 3.41
478 608 4.141892 GGCCATCAAATCATGTCAATCCAA 60.142 41.667 0.00 0.00 0.00 3.53
479 609 4.807304 GCCATCAAATCATGTCAATCCAAC 59.193 41.667 0.00 0.00 0.00 3.77
480 610 5.038683 CCATCAAATCATGTCAATCCAACG 58.961 41.667 0.00 0.00 0.00 4.10
481 611 5.163632 CCATCAAATCATGTCAATCCAACGA 60.164 40.000 0.00 0.00 0.00 3.85
484 614 3.634397 ATCATGTCAATCCAACGACCT 57.366 42.857 0.00 0.00 0.00 3.85
485 615 4.753516 ATCATGTCAATCCAACGACCTA 57.246 40.909 0.00 0.00 0.00 3.08
486 616 4.123497 TCATGTCAATCCAACGACCTAG 57.877 45.455 0.00 0.00 0.00 3.02
487 617 3.767131 TCATGTCAATCCAACGACCTAGA 59.233 43.478 0.00 0.00 0.00 2.43
489 619 3.162666 TGTCAATCCAACGACCTAGACT 58.837 45.455 0.00 0.00 0.00 3.24
490 620 3.056821 TGTCAATCCAACGACCTAGACTG 60.057 47.826 0.00 0.00 0.00 3.51
491 621 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
492 622 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
493 623 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
494 624 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
495 625 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
496 626 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
497 627 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
500 630 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
501 631 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
502 632 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
503 633 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
504 634 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
507 637 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
508 638 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
510 640 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
511 641 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
513 643 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.000 31.93 24.81 0.00 3.32
514 644 1.617755 AATGTCGAGCGCTCAACACG 61.618 55.000 31.93 20.44 0.00 4.49
515 645 2.729862 GTCGAGCGCTCAACACGT 60.730 61.111 34.69 0.00 0.00 4.49
516 646 2.027024 TCGAGCGCTCAACACGTT 59.973 55.556 34.69 0.00 0.00 3.99
517 647 1.590525 TCGAGCGCTCAACACGTTT 60.591 52.632 34.69 0.00 0.00 3.60
535 665 4.459606 CGTTTAGCGTGCAGTTAATTTCA 58.540 39.130 0.00 0.00 35.54 2.69
536 666 5.086058 CGTTTAGCGTGCAGTTAATTTCAT 58.914 37.500 0.00 0.00 35.54 2.57
537 667 5.002468 CGTTTAGCGTGCAGTTAATTTCATG 59.998 40.000 0.00 0.00 35.54 3.07
538 668 2.867429 AGCGTGCAGTTAATTTCATGC 58.133 42.857 6.69 6.69 40.63 4.06
539 669 1.919918 GCGTGCAGTTAATTTCATGCC 59.080 47.619 3.91 0.00 37.89 4.40
540 670 2.670789 GCGTGCAGTTAATTTCATGCCA 60.671 45.455 3.91 0.00 37.89 4.92
542 672 3.986572 CGTGCAGTTAATTTCATGCCAAA 59.013 39.130 0.00 0.00 37.89 3.28
543 673 4.447054 CGTGCAGTTAATTTCATGCCAAAA 59.553 37.500 0.00 0.00 37.89 2.44
544 674 5.050499 CGTGCAGTTAATTTCATGCCAAAAA 60.050 36.000 0.00 0.00 37.89 1.94
545 675 6.347563 CGTGCAGTTAATTTCATGCCAAAAAT 60.348 34.615 0.00 0.00 37.89 1.82
546 676 7.148672 CGTGCAGTTAATTTCATGCCAAAAATA 60.149 33.333 0.00 0.00 37.89 1.40
547 677 8.170553 GTGCAGTTAATTTCATGCCAAAAATAG 58.829 33.333 0.00 0.00 37.89 1.73
548 678 7.877097 TGCAGTTAATTTCATGCCAAAAATAGT 59.123 29.630 6.13 0.00 37.89 2.12
549 679 8.170553 GCAGTTAATTTCATGCCAAAAATAGTG 58.829 33.333 0.00 0.00 32.49 2.74
550 680 8.170553 CAGTTAATTTCATGCCAAAAATAGTGC 58.829 33.333 0.00 0.00 0.00 4.40
552 682 9.364989 GTTAATTTCATGCCAAAAATAGTGCTA 57.635 29.630 0.00 0.00 0.00 3.49
553 683 9.935241 TTAATTTCATGCCAAAAATAGTGCTAA 57.065 25.926 0.00 0.00 0.00 3.09
556 686 6.772360 TCATGCCAAAAATAGTGCTAATCA 57.228 33.333 0.00 0.00 0.00 2.57
570 700 6.043327 GTGCTAATCACATAATAACACGCA 57.957 37.500 0.00 0.00 44.98 5.24
571 701 6.482835 GTGCTAATCACATAATAACACGCAA 58.517 36.000 0.00 0.00 44.98 4.85
572 702 6.964370 GTGCTAATCACATAATAACACGCAAA 59.036 34.615 0.00 0.00 44.98 3.68
573 703 7.483375 GTGCTAATCACATAATAACACGCAAAA 59.517 33.333 0.00 0.00 44.98 2.44
574 704 8.187480 TGCTAATCACATAATAACACGCAAAAT 58.813 29.630 0.00 0.00 0.00 1.82
575 705 9.658475 GCTAATCACATAATAACACGCAAAATA 57.342 29.630 0.00 0.00 0.00 1.40
603 733 8.874744 ATCCTACTTAATATCTGCATGCATTT 57.125 30.769 22.97 14.04 0.00 2.32
604 734 9.964354 ATCCTACTTAATATCTGCATGCATTTA 57.036 29.630 22.97 15.83 0.00 1.40
605 735 9.791801 TCCTACTTAATATCTGCATGCATTTAA 57.208 29.630 22.97 19.11 0.00 1.52
631 1649 4.981389 TTTCCAAATTAACGTGCATTGC 57.019 36.364 0.46 0.46 0.00 3.56
632 1650 3.650070 TCCAAATTAACGTGCATTGCA 57.350 38.095 7.38 7.38 35.60 4.08
644 1662 1.876156 TGCATTGCACGTACACATTGA 59.124 42.857 7.38 0.00 31.71 2.57
646 1664 2.095768 GCATTGCACGTACACATTGACT 60.096 45.455 3.15 0.00 0.00 3.41
647 1665 3.124466 GCATTGCACGTACACATTGACTA 59.876 43.478 3.15 0.00 0.00 2.59
766 1985 9.074443 CGTCACTTACTTCTAAGGAAAAGATAC 57.926 37.037 8.04 5.64 34.62 2.24
768 1987 8.537858 TCACTTACTTCTAAGGAAAAGATACCC 58.462 37.037 8.04 0.00 34.62 3.69
785 2004 8.589701 AAGATACCCTTTTGAATAAATTCCGT 57.410 30.769 0.41 0.00 35.97 4.69
904 2126 0.886563 CCAAGCTGAAGCAAAGAGGG 59.113 55.000 4.90 0.00 45.16 4.30
937 2159 3.803715 GCAAGAGAGTGTAGCCAACAGAA 60.804 47.826 0.00 0.00 39.29 3.02
1188 2425 2.689034 CTGGACCCTCTGGACCCC 60.689 72.222 0.00 0.00 44.86 4.95
1194 2431 2.204151 CCTCTGGACCCCCACCTT 60.204 66.667 0.00 0.00 37.58 3.50
1395 2656 4.463879 CTGCCACTCCCCAGCTCG 62.464 72.222 0.00 0.00 0.00 5.03
1896 3238 1.084370 ATACTGAAGCAAGGCGACGC 61.084 55.000 12.43 12.43 0.00 5.19
1913 3255 1.323412 CGCTCTAGATAGCCACAGGT 58.677 55.000 0.00 0.00 39.43 4.00
1919 3261 5.125367 TCTAGATAGCCACAGGTAGTCAA 57.875 43.478 0.00 0.00 0.00 3.18
2032 3720 7.576861 TGTCCTTTTCTTTCGTAAAAATCCT 57.423 32.000 0.00 0.00 0.00 3.24
2042 3730 4.963373 TCGTAAAAATCCTCACACTCCAA 58.037 39.130 0.00 0.00 0.00 3.53
2043 3741 5.369833 TCGTAAAAATCCTCACACTCCAAA 58.630 37.500 0.00 0.00 0.00 3.28
2069 3767 3.467374 TGAACCCTTCAAAAATGGCAC 57.533 42.857 0.00 0.00 36.59 5.01
2070 3768 2.223923 TGAACCCTTCAAAAATGGCACG 60.224 45.455 0.00 0.00 36.59 5.34
2071 3769 0.678950 ACCCTTCAAAAATGGCACGG 59.321 50.000 0.00 0.00 0.00 4.94
2072 3770 0.678950 CCCTTCAAAAATGGCACGGT 59.321 50.000 0.00 0.00 0.00 4.83
2073 3771 1.889829 CCCTTCAAAAATGGCACGGTA 59.110 47.619 0.00 0.00 0.00 4.02
2074 3772 2.094752 CCCTTCAAAAATGGCACGGTAG 60.095 50.000 0.00 0.00 0.00 3.18
2075 3773 2.595386 CTTCAAAAATGGCACGGTAGC 58.405 47.619 0.00 0.00 0.00 3.58
2076 3774 1.904287 TCAAAAATGGCACGGTAGCT 58.096 45.000 0.00 0.00 34.17 3.32
2077 3775 3.060736 TCAAAAATGGCACGGTAGCTA 57.939 42.857 0.00 0.00 34.17 3.32
2078 3776 2.745281 TCAAAAATGGCACGGTAGCTAC 59.255 45.455 15.88 15.88 34.17 3.58
2079 3777 2.483014 AAAATGGCACGGTAGCTACA 57.517 45.000 24.75 4.05 34.17 2.74
2080 3778 1.734163 AAATGGCACGGTAGCTACAC 58.266 50.000 24.75 13.22 34.17 2.90
2081 3779 0.902531 AATGGCACGGTAGCTACACT 59.097 50.000 24.75 6.47 34.17 3.55
2082 3780 0.460311 ATGGCACGGTAGCTACACTC 59.540 55.000 24.75 10.47 34.17 3.51
2083 3781 1.141234 GGCACGGTAGCTACACTCC 59.859 63.158 24.75 15.19 34.17 3.85
2084 3782 1.601419 GGCACGGTAGCTACACTCCA 61.601 60.000 24.75 0.00 34.17 3.86
2085 3783 0.245539 GCACGGTAGCTACACTCCAA 59.754 55.000 24.75 0.00 0.00 3.53
2086 3784 1.337447 GCACGGTAGCTACACTCCAAA 60.337 52.381 24.75 0.00 0.00 3.28
2087 3785 2.868839 GCACGGTAGCTACACTCCAAAA 60.869 50.000 24.75 0.00 0.00 2.44
2088 3786 3.395639 CACGGTAGCTACACTCCAAAAA 58.604 45.455 24.75 0.00 0.00 1.94
2089 3787 4.000988 CACGGTAGCTACACTCCAAAAAT 58.999 43.478 24.75 0.00 0.00 1.82
2090 3788 5.172934 CACGGTAGCTACACTCCAAAAATA 58.827 41.667 24.75 0.00 0.00 1.40
2091 3789 5.640357 CACGGTAGCTACACTCCAAAAATAA 59.360 40.000 24.75 0.00 0.00 1.40
2092 3790 6.315393 CACGGTAGCTACACTCCAAAAATAAT 59.685 38.462 24.75 0.00 0.00 1.28
2093 3791 7.493320 CACGGTAGCTACACTCCAAAAATAATA 59.507 37.037 24.75 0.00 0.00 0.98
2094 3792 8.042515 ACGGTAGCTACACTCCAAAAATAATAA 58.957 33.333 24.75 0.00 0.00 1.40
2095 3793 9.052759 CGGTAGCTACACTCCAAAAATAATAAT 57.947 33.333 24.75 0.00 0.00 1.28
2141 3839 2.981302 GGTCCAAAATGGGCTGCC 59.019 61.111 11.05 11.05 43.05 4.85
2142 3840 1.912763 GGTCCAAAATGGGCTGCCA 60.913 57.895 22.05 7.16 43.05 4.92
2192 3894 1.218047 GGTGCTACTGTGCGATGGA 59.782 57.895 0.00 0.00 35.36 3.41
2222 3924 1.956802 CTTTGACAAACTCGGGGGC 59.043 57.895 0.00 0.00 0.00 5.80
2242 3944 3.800506 GGCAGCGTGTTAATAGTCGTTAT 59.199 43.478 0.00 0.00 0.00 1.89
2280 3982 2.554893 ACGAAAACATTAACGCCCACAT 59.445 40.909 0.00 0.00 0.00 3.21
2295 3997 1.408683 CCACATGTATGGGTGTCTGGG 60.409 57.143 0.00 0.00 35.95 4.45
2296 3998 0.918983 ACATGTATGGGTGTCTGGGG 59.081 55.000 0.00 0.00 0.00 4.96
2354 4056 1.206578 CACGAATCTTGGCGCGTTT 59.793 52.632 8.43 0.00 34.37 3.60
2364 4066 0.317436 TGGCGCGTTTTAGCAGTTTG 60.317 50.000 8.43 0.00 36.85 2.93
2405 4107 1.259609 CTGGTGTGTGGGCATTCATT 58.740 50.000 0.00 0.00 0.00 2.57
2419 4121 2.358125 CATTCGGTCGCCCACACA 60.358 61.111 0.00 0.00 0.00 3.72
2531 4235 1.014352 GCGTTTATCACTTCGCCCAT 58.986 50.000 0.00 0.00 42.33 4.00
2546 4250 2.125326 CCATACGCCCGTCTCCTCA 61.125 63.158 0.00 0.00 0.00 3.86
2603 4309 1.280710 CAGGGTACATGGTAACTGCCA 59.719 52.381 0.00 0.00 43.48 4.92
2822 4538 0.250858 AGTGCTACATGGCAACTGCA 60.251 50.000 3.76 0.00 44.18 4.41
2879 4625 1.089920 CATGGCAACTGCAGTAGACC 58.910 55.000 22.01 21.02 44.36 3.85
2880 4626 0.692476 ATGGCAACTGCAGTAGACCA 59.308 50.000 27.80 27.80 44.36 4.02
2881 4627 0.035317 TGGCAACTGCAGTAGACCAG 59.965 55.000 22.01 7.33 44.36 4.00
2882 4628 0.321671 GGCAACTGCAGTAGACCAGA 59.678 55.000 22.01 0.00 44.36 3.86
2883 4629 1.065854 GGCAACTGCAGTAGACCAGAT 60.066 52.381 22.01 0.00 44.36 2.90
2884 4630 2.275318 GCAACTGCAGTAGACCAGATC 58.725 52.381 22.01 0.00 41.59 2.75
2885 4631 2.354103 GCAACTGCAGTAGACCAGATCA 60.354 50.000 22.01 0.00 41.59 2.92
2886 4632 3.681034 GCAACTGCAGTAGACCAGATCAT 60.681 47.826 22.01 0.00 41.59 2.45
2887 4633 4.442052 GCAACTGCAGTAGACCAGATCATA 60.442 45.833 22.01 0.00 41.59 2.15
2888 4634 4.927978 ACTGCAGTAGACCAGATCATAC 57.072 45.455 20.16 0.00 33.40 2.39
2889 4635 4.281657 ACTGCAGTAGACCAGATCATACA 58.718 43.478 20.16 0.00 33.40 2.29
2890 4636 4.898265 ACTGCAGTAGACCAGATCATACAT 59.102 41.667 20.16 0.00 33.40 2.29
2891 4637 5.205759 TGCAGTAGACCAGATCATACATG 57.794 43.478 0.00 0.00 0.00 3.21
2892 4638 4.039609 TGCAGTAGACCAGATCATACATGG 59.960 45.833 0.00 0.00 40.10 3.66
2893 4639 4.564041 CAGTAGACCAGATCATACATGGC 58.436 47.826 0.00 0.00 37.64 4.40
2894 4640 4.039609 CAGTAGACCAGATCATACATGGCA 59.960 45.833 0.00 0.00 37.64 4.92
2895 4641 4.655649 AGTAGACCAGATCATACATGGCAA 59.344 41.667 0.00 0.00 37.64 4.52
2896 4642 3.813443 AGACCAGATCATACATGGCAAC 58.187 45.455 0.00 0.00 37.64 4.17
2897 4643 3.457380 AGACCAGATCATACATGGCAACT 59.543 43.478 0.00 0.00 37.64 3.16
2898 4644 3.548770 ACCAGATCATACATGGCAACTG 58.451 45.455 0.00 0.00 37.64 3.16
2899 4645 2.292569 CCAGATCATACATGGCAACTGC 59.707 50.000 0.00 0.00 41.14 4.40
2900 4646 2.946990 CAGATCATACATGGCAACTGCA 59.053 45.455 3.76 0.00 44.36 4.41
2901 4647 3.003378 CAGATCATACATGGCAACTGCAG 59.997 47.826 13.48 13.48 44.36 4.41
2902 4648 2.495155 TCATACATGGCAACTGCAGT 57.505 45.000 15.25 15.25 44.36 4.40
2903 4649 3.625649 TCATACATGGCAACTGCAGTA 57.374 42.857 22.01 4.30 44.36 2.74
2904 4650 3.534554 TCATACATGGCAACTGCAGTAG 58.465 45.455 22.01 8.61 44.36 2.57
2905 4651 3.197549 TCATACATGGCAACTGCAGTAGA 59.802 43.478 22.01 4.58 44.36 2.59
2906 4652 1.813513 ACATGGCAACTGCAGTAGAC 58.186 50.000 22.01 13.35 44.36 2.59
2911 4657 1.065854 GGCAACTGCAGTAGACCAGAT 60.066 52.381 22.01 0.00 44.36 2.90
2947 4745 0.963962 AGTTGAGCAACCATGGCAAG 59.036 50.000 13.04 2.61 42.06 4.01
3004 4824 0.665835 TGGCAACTGCAGTTAAACGG 59.334 50.000 30.67 19.05 44.36 4.44
3169 5014 4.400884 TGTGTGGACATTACTTGTTTTGCT 59.599 37.500 0.00 0.00 39.18 3.91
3259 5104 0.108804 CACGTGTGGCTCTTATCGGT 60.109 55.000 7.58 0.00 0.00 4.69
3269 5114 4.058817 GGCTCTTATCGGTGTCCTAAATG 58.941 47.826 0.00 0.00 0.00 2.32
3280 5125 5.997746 CGGTGTCCTAAATGTATCCATCAAT 59.002 40.000 0.00 0.00 0.00 2.57
3313 5158 1.580845 GCGCTGCTGGTTGTTGAGAT 61.581 55.000 0.00 0.00 0.00 2.75
3318 5163 3.365364 GCTGCTGGTTGTTGAGATTGTAC 60.365 47.826 0.00 0.00 0.00 2.90
3329 5174 3.215151 TGAGATTGTACGTTTGCCCAAA 58.785 40.909 0.00 0.00 0.00 3.28
3360 5205 1.705873 ACCCTATACTTCTGAGCCGG 58.294 55.000 0.00 0.00 0.00 6.13
3451 5353 8.227731 AGAACAAACTATTTATTTTTGAGCGC 57.772 30.769 0.00 0.00 34.84 5.92
3465 5367 1.623811 TGAGCGCCCTAAGGAATATCC 59.376 52.381 2.29 0.00 36.58 2.59
3666 5582 0.608035 GCATCAACAAACCCGAGGGA 60.608 55.000 16.26 0.00 38.96 4.20
3858 5774 5.354234 CGTGGAGCTTACCATAAGAACAATT 59.646 40.000 0.00 0.00 42.17 2.32
3882 5798 1.030457 CTCCGTACATCCGTAAGCCT 58.970 55.000 0.00 0.00 0.00 4.58
4005 5921 1.529244 GCTGGTGAACAAGGGTGCT 60.529 57.895 0.00 0.00 0.00 4.40
4133 6049 4.675408 GCACATCTGAGTTACTCACATCGA 60.675 45.833 11.42 7.68 35.39 3.59
4143 6059 6.173339 AGTTACTCACATCGACCATTGAAAT 58.827 36.000 0.00 0.00 0.00 2.17
4146 6062 5.188434 ACTCACATCGACCATTGAAATGAT 58.812 37.500 4.58 0.00 38.70 2.45
4147 6063 5.649395 ACTCACATCGACCATTGAAATGATT 59.351 36.000 4.58 0.00 38.70 2.57
4149 6065 7.011763 ACTCACATCGACCATTGAAATGATTAG 59.988 37.037 4.58 0.00 38.70 1.73
4150 6066 6.260714 TCACATCGACCATTGAAATGATTAGG 59.739 38.462 4.58 0.00 38.70 2.69
4268 6256 9.638239 GCAATCTAAGTGAATGTTCCAAAATAA 57.362 29.630 0.00 0.00 0.00 1.40
4310 6298 6.743575 ATATGAAGAAACAACTTTCCCTCG 57.256 37.500 0.00 0.00 37.12 4.63
4311 6299 3.211045 TGAAGAAACAACTTTCCCTCGG 58.789 45.455 0.00 0.00 37.12 4.63
4341 6329 5.493133 TTCCAAAATAAACTATGCGCGAT 57.507 34.783 12.10 2.89 0.00 4.58
4362 6350 7.571059 CGCGATACATGAATATGATGAAACCAA 60.571 37.037 0.00 0.00 37.73 3.67
4415 6403 9.752961 CTTCATGCCAAATTTGTTGATCATATA 57.247 29.630 16.73 1.54 0.00 0.86
4437 6425 4.196971 ACTTGGTGTACTTGGTTTGAGAC 58.803 43.478 0.00 0.00 0.00 3.36
4447 6435 3.576078 TGGTTTGAGACATGAAGGTGT 57.424 42.857 0.00 0.00 34.39 4.16
4465 6502 3.391506 TGTCATCACAGACACTCCAAG 57.608 47.619 0.00 0.00 43.18 3.61
4469 6506 2.245159 TCACAGACACTCCAAGCTTG 57.755 50.000 19.93 19.93 0.00 4.01
4477 6514 1.000938 CACTCCAAGCTTGCTTTCCAC 60.001 52.381 21.43 0.00 0.00 4.02
4559 6600 4.452455 CCTAGTGAACATGGTTGAGTCAAC 59.548 45.833 25.00 25.00 42.89 3.18
4565 6606 6.874134 GTGAACATGGTTGAGTCAACTATACT 59.126 38.462 28.11 19.84 42.15 2.12
4619 6660 2.039480 AGCACTCATACCATGCCCTATG 59.961 50.000 0.00 0.00 40.33 2.23
4634 6675 2.755103 CCCTATGGGCTTGTTTGAGTTC 59.245 50.000 0.00 0.00 35.35 3.01
4640 6681 3.886505 TGGGCTTGTTTGAGTTCGTAAAT 59.113 39.130 0.00 0.00 0.00 1.40
4649 6690 5.856126 TTGAGTTCGTAAATAGCCTTGTG 57.144 39.130 0.00 0.00 0.00 3.33
4665 6706 4.589908 CCTTGTGGAGTTTATAGCAAGGT 58.410 43.478 11.65 0.00 44.53 3.50
4676 6717 5.957842 TTATAGCAAGGTTGGACAACTTG 57.042 39.130 14.14 15.36 40.94 3.16
4679 6720 1.067060 GCAAGGTTGGACAACTTGGAC 59.933 52.381 14.14 0.00 40.94 4.02
4690 6731 5.011125 TGGACAACTTGGACTTTTCAAAACA 59.989 36.000 0.00 0.00 0.00 2.83
4782 6823 1.548719 TGGAGAGTTATGTCGTGGTGG 59.451 52.381 0.00 0.00 0.00 4.61
4786 6827 2.427453 AGAGTTATGTCGTGGTGGCTAG 59.573 50.000 0.00 0.00 0.00 3.42
4805 6846 5.180304 GGCTAGCATAAGCAAGAAGAATACC 59.820 44.000 18.24 0.00 44.64 2.73
4810 6851 8.930846 AGCATAAGCAAGAAGAATACCAATAT 57.069 30.769 0.00 0.00 45.49 1.28
4820 6861 8.553459 AGAAGAATACCAATATATTCAAGGCG 57.447 34.615 7.94 0.00 41.95 5.52
4823 6864 7.224297 AGAATACCAATATATTCAAGGCGTGT 58.776 34.615 0.00 0.00 41.95 4.49
4826 6867 5.376625 ACCAATATATTCAAGGCGTGTCAT 58.623 37.500 0.00 0.00 0.00 3.06
4831 6872 0.955428 TTCAAGGCGTGTCATGAGGC 60.955 55.000 0.00 0.00 0.00 4.70
4849 6890 1.308998 GCCATATGCCGCACTAAAGT 58.691 50.000 0.00 0.00 0.00 2.66
4850 6891 1.264288 GCCATATGCCGCACTAAAGTC 59.736 52.381 0.00 0.00 0.00 3.01
4851 6892 2.838736 CCATATGCCGCACTAAAGTCT 58.161 47.619 0.00 0.00 0.00 3.24
4853 6894 4.377021 CCATATGCCGCACTAAAGTCTAA 58.623 43.478 0.00 0.00 0.00 2.10
4854 6895 4.211374 CCATATGCCGCACTAAAGTCTAAC 59.789 45.833 0.00 0.00 0.00 2.34
4855 6896 2.823924 TGCCGCACTAAAGTCTAACA 57.176 45.000 0.00 0.00 0.00 2.41
4870 6911 8.472007 AAAGTCTAACATTCAATTTGGGTGTA 57.528 30.769 7.63 0.00 0.00 2.90
4890 6931 1.519246 CCTTGAGCGATGAGGCTGA 59.481 57.895 0.00 0.00 44.93 4.26
4908 6949 3.743396 GCTGAGAAGATTGTCGAAGTGTT 59.257 43.478 0.00 0.00 0.00 3.32
4912 6953 6.150318 TGAGAAGATTGTCGAAGTGTTCTAC 58.850 40.000 5.66 2.58 0.00 2.59
4919 6960 3.083293 GTCGAAGTGTTCTACCCTCTCT 58.917 50.000 0.00 0.00 0.00 3.10
4920 6961 3.082548 TCGAAGTGTTCTACCCTCTCTG 58.917 50.000 0.00 0.00 0.00 3.35
4932 6973 2.441051 TCTCTGTGAGAGGGCCGT 59.559 61.111 0.00 0.00 42.54 5.68
4950 7011 1.207329 CGTATGGCTTATCCCCTAGGC 59.793 57.143 2.05 0.00 37.45 3.93
4952 7013 2.140098 ATGGCTTATCCCCTAGGCTT 57.860 50.000 2.05 0.00 37.78 4.35
4953 7014 1.907240 TGGCTTATCCCCTAGGCTTT 58.093 50.000 2.05 0.00 37.78 3.51
4973 7034 7.665559 AGGCTTTACACATGATTTTCTCTACAA 59.334 33.333 0.00 0.00 0.00 2.41
4986 7047 3.770666 TCTCTACAAGCGTGATTAGCAC 58.229 45.455 6.65 0.00 44.21 4.40
5062 7123 3.677963 CAACTCTTGGGGGCATTCT 57.322 52.632 0.00 0.00 0.00 2.40
5063 7124 2.806945 CAACTCTTGGGGGCATTCTA 57.193 50.000 0.00 0.00 0.00 2.10
5064 7125 3.085952 CAACTCTTGGGGGCATTCTAA 57.914 47.619 0.00 0.00 0.00 2.10
5067 7128 3.701664 ACTCTTGGGGGCATTCTAAAAG 58.298 45.455 0.00 0.00 0.00 2.27
5078 7139 3.367395 GCATTCTAAAAGCCTGTGGAACC 60.367 47.826 0.00 0.00 34.36 3.62
5079 7140 3.876309 TTCTAAAAGCCTGTGGAACCT 57.124 42.857 0.00 0.00 34.36 3.50
5080 7141 3.876309 TCTAAAAGCCTGTGGAACCTT 57.124 42.857 0.00 0.00 34.36 3.50
5094 7155 8.875168 CCTGTGGAACCTTCTAGATAATATCTT 58.125 37.037 8.20 0.00 37.07 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.305386 CCTTACATGTGATATCAGACCCAGA 59.695 44.000 9.11 0.00 0.00 3.86
14 15 4.202357 TGCCCCTTACATGTGATATCAGAC 60.202 45.833 9.11 0.00 0.00 3.51
22 23 1.656587 AGAGTGCCCCTTACATGTGA 58.343 50.000 9.11 0.00 0.00 3.58
26 27 3.707102 GAGAACTAGAGTGCCCCTTACAT 59.293 47.826 0.00 0.00 0.00 2.29
104 105 1.452289 CTTCTCCCCTCTCGCGAGA 60.452 63.158 34.65 34.65 39.74 4.04
108 109 1.408969 ATCTTCTTCTCCCCTCTCGC 58.591 55.000 0.00 0.00 0.00 5.03
109 110 3.954904 TGTAATCTTCTTCTCCCCTCTCG 59.045 47.826 0.00 0.00 0.00 4.04
110 111 5.683770 GCTTGTAATCTTCTTCTCCCCTCTC 60.684 48.000 0.00 0.00 0.00 3.20
111 112 4.163268 GCTTGTAATCTTCTTCTCCCCTCT 59.837 45.833 0.00 0.00 0.00 3.69
113 114 3.201045 GGCTTGTAATCTTCTTCTCCCCT 59.799 47.826 0.00 0.00 0.00 4.79
114 115 3.054361 TGGCTTGTAATCTTCTTCTCCCC 60.054 47.826 0.00 0.00 0.00 4.81
115 116 3.942115 GTGGCTTGTAATCTTCTTCTCCC 59.058 47.826 0.00 0.00 0.00 4.30
116 117 3.942115 GGTGGCTTGTAATCTTCTTCTCC 59.058 47.826 0.00 0.00 0.00 3.71
117 118 3.619038 CGGTGGCTTGTAATCTTCTTCTC 59.381 47.826 0.00 0.00 0.00 2.87
118 119 3.600388 CGGTGGCTTGTAATCTTCTTCT 58.400 45.455 0.00 0.00 0.00 2.85
119 120 2.096013 GCGGTGGCTTGTAATCTTCTTC 59.904 50.000 0.00 0.00 35.83 2.87
144 145 1.146774 TCCTGGCTTGGATCAAAACCA 59.853 47.619 4.86 4.86 35.47 3.67
149 150 2.130193 AGCTATCCTGGCTTGGATCAA 58.870 47.619 14.13 0.63 44.93 2.57
180 205 9.781425 ACATGGACTATATATTCCAGAGAGAAT 57.219 33.333 22.15 5.86 45.20 2.40
261 288 6.624352 AATGTCAGCGAACATATTAGCAAT 57.376 33.333 7.33 0.00 38.92 3.56
263 290 7.440856 TGATAAATGTCAGCGAACATATTAGCA 59.559 33.333 7.33 12.16 38.92 3.49
269 296 6.337356 TCTGTGATAAATGTCAGCGAACATA 58.663 36.000 7.33 0.00 38.92 2.29
271 298 4.565022 TCTGTGATAAATGTCAGCGAACA 58.435 39.130 0.00 0.00 0.00 3.18
272 299 5.555256 CGATCTGTGATAAATGTCAGCGAAC 60.555 44.000 0.00 0.00 0.00 3.95
274 301 4.044426 CGATCTGTGATAAATGTCAGCGA 58.956 43.478 0.00 0.00 0.00 4.93
277 304 7.918033 AGTAGTTCGATCTGTGATAAATGTCAG 59.082 37.037 6.25 0.00 0.00 3.51
279 306 9.900710 ATAGTAGTTCGATCTGTGATAAATGTC 57.099 33.333 6.25 0.00 0.00 3.06
292 323 9.448294 ACGTCAGATTTTTATAGTAGTTCGATC 57.552 33.333 0.00 0.00 0.00 3.69
294 325 7.699391 CCACGTCAGATTTTTATAGTAGTTCGA 59.301 37.037 0.00 0.00 0.00 3.71
321 352 3.127548 GCGAATATTGGCCATCATCGAAT 59.872 43.478 25.51 11.04 0.00 3.34
323 354 2.076100 GCGAATATTGGCCATCATCGA 58.924 47.619 25.51 5.08 0.00 3.59
328 359 0.310543 TTGCGCGAATATTGGCCATC 59.689 50.000 12.10 0.00 0.00 3.51
329 360 0.743688 TTTGCGCGAATATTGGCCAT 59.256 45.000 12.10 0.00 0.00 4.40
371 403 2.690778 GGGCGATTTTGCAGCGACT 61.691 57.895 6.24 0.00 36.28 4.18
394 426 5.366482 TTGGTATAGATGCTAACTGGCAA 57.634 39.130 0.00 0.00 45.68 4.52
422 454 0.476771 TCTGCCCCTTTCGGTCTTTT 59.523 50.000 0.00 0.00 0.00 2.27
423 455 0.698818 ATCTGCCCCTTTCGGTCTTT 59.301 50.000 0.00 0.00 0.00 2.52
425 457 0.253327 GAATCTGCCCCTTTCGGTCT 59.747 55.000 0.00 0.00 0.00 3.85
426 458 0.035439 TGAATCTGCCCCTTTCGGTC 60.035 55.000 0.00 0.00 0.00 4.79
427 459 0.404040 TTGAATCTGCCCCTTTCGGT 59.596 50.000 0.00 0.00 0.00 4.69
429 461 4.981806 TTATTTGAATCTGCCCCTTTCG 57.018 40.909 0.00 0.00 0.00 3.46
430 462 6.514048 CGAGATTATTTGAATCTGCCCCTTTC 60.514 42.308 4.58 0.00 37.14 2.62
431 463 5.300286 CGAGATTATTTGAATCTGCCCCTTT 59.700 40.000 4.58 0.00 37.14 3.11
432 464 4.823989 CGAGATTATTTGAATCTGCCCCTT 59.176 41.667 4.58 0.00 37.14 3.95
434 466 3.503748 CCGAGATTATTTGAATCTGCCCC 59.496 47.826 4.58 0.00 37.14 5.80
435 467 3.057946 GCCGAGATTATTTGAATCTGCCC 60.058 47.826 4.58 0.00 37.14 5.36
436 468 3.057946 GGCCGAGATTATTTGAATCTGCC 60.058 47.826 10.95 10.95 38.11 4.85
437 469 3.565482 TGGCCGAGATTATTTGAATCTGC 59.435 43.478 4.58 3.42 37.14 4.26
438 470 5.471116 TGATGGCCGAGATTATTTGAATCTG 59.529 40.000 4.58 0.00 37.14 2.90
439 471 5.624159 TGATGGCCGAGATTATTTGAATCT 58.376 37.500 0.00 0.00 39.53 2.40
440 472 5.947228 TGATGGCCGAGATTATTTGAATC 57.053 39.130 0.00 0.00 0.00 2.52
441 473 6.713762 TTTGATGGCCGAGATTATTTGAAT 57.286 33.333 0.00 0.00 0.00 2.57
442 474 6.320926 TGATTTGATGGCCGAGATTATTTGAA 59.679 34.615 0.00 0.00 0.00 2.69
443 475 5.827267 TGATTTGATGGCCGAGATTATTTGA 59.173 36.000 0.00 0.00 0.00 2.69
444 476 6.075762 TGATTTGATGGCCGAGATTATTTG 57.924 37.500 0.00 0.00 0.00 2.32
445 477 6.266103 ACATGATTTGATGGCCGAGATTATTT 59.734 34.615 0.00 0.00 0.00 1.40
446 478 5.771666 ACATGATTTGATGGCCGAGATTATT 59.228 36.000 0.00 0.00 0.00 1.40
447 479 5.319453 ACATGATTTGATGGCCGAGATTAT 58.681 37.500 0.00 0.00 0.00 1.28
448 480 4.717877 ACATGATTTGATGGCCGAGATTA 58.282 39.130 0.00 0.00 0.00 1.75
459 589 5.163622 GGTCGTTGGATTGACATGATTTGAT 60.164 40.000 0.00 0.00 36.83 2.57
460 590 4.155826 GGTCGTTGGATTGACATGATTTGA 59.844 41.667 0.00 0.00 36.83 2.69
461 591 4.156556 AGGTCGTTGGATTGACATGATTTG 59.843 41.667 0.00 0.00 36.83 2.32
463 593 3.955471 AGGTCGTTGGATTGACATGATT 58.045 40.909 0.00 0.00 36.83 2.57
464 594 3.634397 AGGTCGTTGGATTGACATGAT 57.366 42.857 0.00 0.00 36.83 2.45
465 595 3.767131 TCTAGGTCGTTGGATTGACATGA 59.233 43.478 0.00 0.00 36.83 3.07
466 596 3.865745 GTCTAGGTCGTTGGATTGACATG 59.134 47.826 0.00 0.00 36.83 3.21
467 597 3.769844 AGTCTAGGTCGTTGGATTGACAT 59.230 43.478 0.00 0.00 36.83 3.06
468 598 3.056821 CAGTCTAGGTCGTTGGATTGACA 60.057 47.826 0.00 0.00 36.83 3.58
469 599 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
470 600 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
471 601 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
472 602 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
473 603 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
474 604 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
476 606 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
477 607 3.006967 ACATTGAAGCAGTCTAGGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
478 608 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
479 609 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
480 610 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
481 611 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
484 614 2.732282 CGCTCGACATTGAAGCAGTCTA 60.732 50.000 9.76 0.00 0.00 2.59
485 615 1.719600 GCTCGACATTGAAGCAGTCT 58.280 50.000 0.00 0.00 0.00 3.24
486 616 0.368227 CGCTCGACATTGAAGCAGTC 59.632 55.000 9.76 0.00 0.00 3.51
487 617 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
489 619 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
490 620 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
491 621 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
492 622 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
493 623 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
494 624 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
495 625 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
500 630 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.000 30.75 21.89 0.00 5.03
501 631 0.179248 GCTAAACGTGTTGAGCGCTC 60.179 55.000 30.42 30.42 37.32 5.03
502 632 1.860078 GCTAAACGTGTTGAGCGCT 59.140 52.632 11.27 11.27 37.32 5.92
503 633 4.417240 GCTAAACGTGTTGAGCGC 57.583 55.556 6.34 0.00 37.32 5.92
514 644 5.220024 GCATGAAATTAACTGCACGCTAAAC 60.220 40.000 0.00 0.00 34.77 2.01
515 645 4.856487 GCATGAAATTAACTGCACGCTAAA 59.144 37.500 0.00 0.00 34.77 1.85
516 646 4.411327 GCATGAAATTAACTGCACGCTAA 58.589 39.130 0.00 0.00 34.77 3.09
517 647 3.181501 GGCATGAAATTAACTGCACGCTA 60.182 43.478 0.00 0.00 36.34 4.26
522 652 7.877097 ACTATTTTTGGCATGAAATTAACTGCA 59.123 29.630 12.62 0.00 36.34 4.41
523 653 8.170553 CACTATTTTTGGCATGAAATTAACTGC 58.829 33.333 12.62 0.00 0.00 4.40
524 654 8.170553 GCACTATTTTTGGCATGAAATTAACTG 58.829 33.333 12.62 6.55 0.00 3.16
525 655 8.096414 AGCACTATTTTTGGCATGAAATTAACT 58.904 29.630 12.62 5.62 0.00 2.24
529 659 9.101655 GATTAGCACTATTTTTGGCATGAAATT 57.898 29.630 12.62 0.92 0.00 1.82
531 661 7.545265 GTGATTAGCACTATTTTTGGCATGAAA 59.455 33.333 0.00 0.00 44.27 2.69
532 662 7.035004 GTGATTAGCACTATTTTTGGCATGAA 58.965 34.615 0.00 0.00 44.27 2.57
533 663 6.563422 GTGATTAGCACTATTTTTGGCATGA 58.437 36.000 0.00 0.00 44.27 3.07
534 664 6.817270 GTGATTAGCACTATTTTTGGCATG 57.183 37.500 0.00 0.00 44.27 4.06
548 678 6.670077 TTGCGTGTTATTATGTGATTAGCA 57.330 33.333 0.00 0.00 0.00 3.49
549 679 7.962934 TTTTGCGTGTTATTATGTGATTAGC 57.037 32.000 0.00 0.00 0.00 3.09
577 707 9.964354 AAATGCATGCAGATATTAAGTAGGATA 57.036 29.630 26.69 0.00 0.00 2.59
578 708 8.874744 AAATGCATGCAGATATTAAGTAGGAT 57.125 30.769 26.69 0.00 0.00 3.24
579 709 9.791801 TTAAATGCATGCAGATATTAAGTAGGA 57.208 29.630 26.69 4.28 0.00 2.94
605 735 8.977505 GCAATGCACGTTAATTTGGAAATATAT 58.022 29.630 0.00 0.00 0.00 0.86
606 736 7.976175 TGCAATGCACGTTAATTTGGAAATATA 59.024 29.630 2.72 0.00 31.71 0.86
608 738 6.159293 TGCAATGCACGTTAATTTGGAAATA 58.841 32.000 2.72 0.00 31.71 1.40
609 739 4.993584 TGCAATGCACGTTAATTTGGAAAT 59.006 33.333 2.72 0.00 31.71 2.17
610 740 4.371786 TGCAATGCACGTTAATTTGGAAA 58.628 34.783 2.72 0.00 31.71 3.13
628 1646 3.985008 ACTAGTCAATGTGTACGTGCAA 58.015 40.909 8.25 0.00 0.00 4.08
629 1647 3.653539 ACTAGTCAATGTGTACGTGCA 57.346 42.857 0.82 0.82 0.00 4.57
630 1648 4.143179 GGAAACTAGTCAATGTGTACGTGC 60.143 45.833 0.00 0.00 0.00 5.34
631 1649 4.089493 CGGAAACTAGTCAATGTGTACGTG 59.911 45.833 0.00 0.00 0.00 4.49
632 1650 4.232221 CGGAAACTAGTCAATGTGTACGT 58.768 43.478 0.00 0.00 0.00 3.57
633 1651 4.232221 ACGGAAACTAGTCAATGTGTACG 58.768 43.478 0.00 0.00 0.00 3.67
635 1653 8.659925 TTTTTACGGAAACTAGTCAATGTGTA 57.340 30.769 0.00 0.00 0.00 2.90
636 1654 7.556733 TTTTTACGGAAACTAGTCAATGTGT 57.443 32.000 0.00 0.00 0.00 3.72
673 1891 2.891191 TTTAAGGAATCACCGGGCTT 57.109 45.000 6.32 0.00 44.74 4.35
718 1936 1.923356 TCCTTTTGCCCTTGATCCAC 58.077 50.000 0.00 0.00 0.00 4.02
766 1985 8.996024 ATTTACACGGAATTTATTCAAAAGGG 57.004 30.769 4.97 0.00 38.53 3.95
785 2004 6.627395 CAACCACTGGACTGTAAATTTACA 57.373 37.500 25.48 25.48 41.06 2.41
904 2126 2.478134 CACTCTCTTGCTAGTGTTGTGC 59.522 50.000 10.60 0.00 38.62 4.57
1188 2425 1.817099 GATGCTGGAGCGAAGGTGG 60.817 63.158 0.00 0.00 45.83 4.61
1194 2431 0.758310 AGGAGATGATGCTGGAGCGA 60.758 55.000 0.00 0.00 45.83 4.93
1856 3193 3.549299 AGTCAATCGCTTTGCTTCTTG 57.451 42.857 0.00 0.00 35.16 3.02
1896 3238 4.720046 TGACTACCTGTGGCTATCTAGAG 58.280 47.826 0.00 0.00 0.00 2.43
1913 3255 5.497464 TCTTGGGAACATCACATTGACTA 57.503 39.130 0.00 0.00 42.32 2.59
1919 3261 8.877864 TTTAACTTATCTTGGGAACATCACAT 57.122 30.769 0.00 0.00 42.32 3.21
2032 3720 6.074648 AGGGTTCAATTATTTTGGAGTGTGA 58.925 36.000 0.00 0.00 0.00 3.58
2066 3764 0.245539 TTGGAGTGTAGCTACCGTGC 59.754 55.000 21.01 13.30 0.00 5.34
2067 3765 2.736144 TTTGGAGTGTAGCTACCGTG 57.264 50.000 21.01 0.00 0.00 4.94
2068 3766 3.756933 TTTTTGGAGTGTAGCTACCGT 57.243 42.857 21.01 8.09 0.00 4.83
2069 3767 6.920569 ATTATTTTTGGAGTGTAGCTACCG 57.079 37.500 21.01 0.00 0.00 4.02
2079 3777 9.528018 CGTGCCATTTATTATTATTTTTGGAGT 57.472 29.630 0.00 0.00 0.00 3.85
2080 3778 8.977505 CCGTGCCATTTATTATTATTTTTGGAG 58.022 33.333 0.00 0.00 0.00 3.86
2081 3779 8.478877 ACCGTGCCATTTATTATTATTTTTGGA 58.521 29.630 0.00 0.00 0.00 3.53
2082 3780 8.655651 ACCGTGCCATTTATTATTATTTTTGG 57.344 30.769 0.00 0.00 0.00 3.28
2084 3782 9.471084 GCTACCGTGCCATTTATTATTATTTTT 57.529 29.630 0.00 0.00 0.00 1.94
2085 3783 8.634444 TGCTACCGTGCCATTTATTATTATTTT 58.366 29.630 0.00 0.00 0.00 1.82
2086 3784 8.172352 TGCTACCGTGCCATTTATTATTATTT 57.828 30.769 0.00 0.00 0.00 1.40
2087 3785 7.753309 TGCTACCGTGCCATTTATTATTATT 57.247 32.000 0.00 0.00 0.00 1.40
2088 3786 7.447238 ACTTGCTACCGTGCCATTTATTATTAT 59.553 33.333 0.00 0.00 0.00 1.28
2089 3787 6.768861 ACTTGCTACCGTGCCATTTATTATTA 59.231 34.615 0.00 0.00 0.00 0.98
2090 3788 5.592688 ACTTGCTACCGTGCCATTTATTATT 59.407 36.000 0.00 0.00 0.00 1.40
2091 3789 5.130350 ACTTGCTACCGTGCCATTTATTAT 58.870 37.500 0.00 0.00 0.00 1.28
2092 3790 4.519213 ACTTGCTACCGTGCCATTTATTA 58.481 39.130 0.00 0.00 0.00 0.98
2093 3791 3.352648 ACTTGCTACCGTGCCATTTATT 58.647 40.909 0.00 0.00 0.00 1.40
2094 3792 2.999331 ACTTGCTACCGTGCCATTTAT 58.001 42.857 0.00 0.00 0.00 1.40
2095 3793 2.483014 ACTTGCTACCGTGCCATTTA 57.517 45.000 0.00 0.00 0.00 1.40
2096 3794 1.616159 AACTTGCTACCGTGCCATTT 58.384 45.000 0.00 0.00 0.00 2.32
2097 3795 2.483014 TAACTTGCTACCGTGCCATT 57.517 45.000 0.00 0.00 0.00 3.16
2098 3796 2.081462 GTTAACTTGCTACCGTGCCAT 58.919 47.619 0.00 0.00 0.00 4.40
2099 3797 1.202663 TGTTAACTTGCTACCGTGCCA 60.203 47.619 7.22 0.00 0.00 4.92
2100 3798 1.196127 GTGTTAACTTGCTACCGTGCC 59.804 52.381 7.22 0.00 0.00 5.01
2181 3883 3.200593 GCTGGCTCCATCGCACAG 61.201 66.667 0.00 0.00 33.88 3.66
2222 3924 5.517411 TGGAATAACGACTATTAACACGCTG 59.483 40.000 0.00 0.00 29.89 5.18
2280 3982 0.118346 AGTCCCCAGACACCCATACA 59.882 55.000 0.00 0.00 46.15 2.29
2295 3997 1.956170 CATGCGTATGGGCGAGTCC 60.956 63.158 5.47 0.00 35.06 3.85
2296 3998 3.630204 CATGCGTATGGGCGAGTC 58.370 61.111 5.47 0.00 35.06 3.36
2306 4008 0.753848 TGGACGAGGATCCATGCGTA 60.754 55.000 21.91 9.37 44.14 4.42
2354 4056 1.756430 TGGCACACACAAACTGCTAA 58.244 45.000 0.00 0.00 0.00 3.09
2419 4121 1.616159 CCCGTGTGGTGAAAAAGGAT 58.384 50.000 0.00 0.00 0.00 3.24
2470 4174 2.025589 TGCGTGAAAACTGGTGTGTA 57.974 45.000 0.00 0.00 0.00 2.90
2531 4235 2.753043 GGTGAGGAGACGGGCGTA 60.753 66.667 0.00 0.00 0.00 4.42
2546 4250 2.198426 CCAGCTTTGGGTGTGGGT 59.802 61.111 0.00 0.00 39.09 4.51
2822 4538 2.642807 AGTTGCCACCCACTAACACTAT 59.357 45.455 0.00 0.00 0.00 2.12
2879 4625 2.946990 TGCAGTTGCCATGTATGATCTG 59.053 45.455 1.06 0.00 41.18 2.90
2880 4626 3.211865 CTGCAGTTGCCATGTATGATCT 58.788 45.455 5.25 0.00 41.18 2.75
2881 4627 2.947652 ACTGCAGTTGCCATGTATGATC 59.052 45.455 15.25 0.00 41.18 2.92
2882 4628 3.008835 ACTGCAGTTGCCATGTATGAT 57.991 42.857 15.25 0.00 41.18 2.45
2883 4629 2.495155 ACTGCAGTTGCCATGTATGA 57.505 45.000 15.25 0.00 41.18 2.15
2884 4630 3.310774 GTCTACTGCAGTTGCCATGTATG 59.689 47.826 27.06 3.18 41.18 2.39
2885 4631 3.535561 GTCTACTGCAGTTGCCATGTAT 58.464 45.455 27.06 0.00 41.18 2.29
2886 4632 2.354704 GGTCTACTGCAGTTGCCATGTA 60.355 50.000 27.06 2.69 41.18 2.29
2887 4633 1.611673 GGTCTACTGCAGTTGCCATGT 60.612 52.381 27.06 0.00 41.18 3.21
2888 4634 1.089920 GGTCTACTGCAGTTGCCATG 58.910 55.000 27.06 8.76 41.18 3.66
2889 4635 0.692476 TGGTCTACTGCAGTTGCCAT 59.308 50.000 27.06 0.12 41.18 4.40
2890 4636 0.035317 CTGGTCTACTGCAGTTGCCA 59.965 55.000 28.04 28.04 41.18 4.92
2891 4637 0.321671 TCTGGTCTACTGCAGTTGCC 59.678 55.000 27.06 25.05 41.18 4.52
2892 4638 2.275318 GATCTGGTCTACTGCAGTTGC 58.725 52.381 27.06 17.71 42.50 4.17
2893 4639 3.599730 TGATCTGGTCTACTGCAGTTG 57.400 47.619 27.06 23.41 0.00 3.16
2894 4640 4.711846 TGTATGATCTGGTCTACTGCAGTT 59.288 41.667 27.06 9.41 0.00 3.16
2895 4641 4.281657 TGTATGATCTGGTCTACTGCAGT 58.718 43.478 25.12 25.12 0.00 4.40
2896 4642 4.926140 TGTATGATCTGGTCTACTGCAG 57.074 45.455 13.48 13.48 0.00 4.41
2897 4643 4.039609 CCATGTATGATCTGGTCTACTGCA 59.960 45.833 0.00 0.00 0.00 4.41
2898 4644 4.564041 CCATGTATGATCTGGTCTACTGC 58.436 47.826 0.00 0.00 0.00 4.40
2899 4645 4.039609 TGCCATGTATGATCTGGTCTACTG 59.960 45.833 0.00 0.00 32.42 2.74
2900 4646 4.226384 TGCCATGTATGATCTGGTCTACT 58.774 43.478 0.00 0.00 32.42 2.57
2901 4647 4.607293 TGCCATGTATGATCTGGTCTAC 57.393 45.455 0.00 0.00 32.42 2.59
2902 4648 4.655649 AGTTGCCATGTATGATCTGGTCTA 59.344 41.667 0.00 0.00 32.42 2.59
2903 4649 3.457380 AGTTGCCATGTATGATCTGGTCT 59.543 43.478 0.00 0.00 32.42 3.85
2904 4650 3.562973 CAGTTGCCATGTATGATCTGGTC 59.437 47.826 0.00 0.00 32.42 4.02
2905 4651 3.548770 CAGTTGCCATGTATGATCTGGT 58.451 45.455 0.00 0.00 32.42 4.00
2906 4652 2.292569 GCAGTTGCCATGTATGATCTGG 59.707 50.000 0.00 0.00 34.31 3.86
2911 4657 2.495155 ACTGCAGTTGCCATGTATGA 57.505 45.000 15.25 0.00 41.18 2.15
2947 4745 1.076332 GCCATGTCGGACAACTACAC 58.924 55.000 15.72 0.00 36.56 2.90
3004 4824 0.970937 TCCAGACCCTCGTCCATGTC 60.971 60.000 0.00 0.00 40.12 3.06
3077 4897 2.473816 CCGTACGTCAGGTCGTATCTA 58.526 52.381 15.21 0.00 45.61 1.98
3104 4926 0.433492 CGCGAAATAGATAACGCCCG 59.567 55.000 0.00 0.00 46.69 6.13
3250 5095 6.551975 TGGATACATTTAGGACACCGATAAGA 59.448 38.462 0.00 0.00 46.17 2.10
3269 5114 4.470462 GCATCGCTTTCATTGATGGATAC 58.530 43.478 3.89 0.00 39.84 2.24
3349 5194 5.629079 AGAATTTTTAACCGGCTCAGAAG 57.371 39.130 0.00 0.00 0.00 2.85
3562 5478 0.247736 GTGATGCTGACCTCCTCGTT 59.752 55.000 0.00 0.00 0.00 3.85
3666 5582 2.233922 CACAGGGAACGACTTAGTGGAT 59.766 50.000 0.49 0.00 0.00 3.41
3858 5774 2.531522 TACGGATGTACGGAGATCGA 57.468 50.000 0.00 0.00 42.43 3.59
3882 5798 3.469863 GAGTGTTCCCACCGTGGCA 62.470 63.158 12.54 2.05 42.88 4.92
4005 5921 2.667199 TCGTCCGTGAGAGCGTCA 60.667 61.111 0.00 0.00 0.00 4.35
4133 6049 6.381994 ACATCAAGCCTAATCATTTCAATGGT 59.618 34.615 0.00 0.00 37.03 3.55
4143 6059 5.499313 TGTGAATCACATCAAGCCTAATCA 58.501 37.500 12.63 0.00 39.62 2.57
4146 6062 5.069318 TGTTGTGAATCACATCAAGCCTAA 58.931 37.500 20.85 0.12 44.16 2.69
4147 6063 4.650734 TGTTGTGAATCACATCAAGCCTA 58.349 39.130 20.85 0.81 44.16 3.93
4149 6065 3.921119 TGTTGTGAATCACATCAAGCC 57.079 42.857 20.85 5.92 44.16 4.35
4150 6066 5.224888 ACAATGTTGTGAATCACATCAAGC 58.775 37.500 25.09 11.51 43.92 4.01
4222 6143 8.689972 AGATTGCATAAAAAGGGAAAGATACTG 58.310 33.333 0.00 0.00 0.00 2.74
4293 6281 1.133915 TGCCGAGGGAAAGTTGTTTCT 60.134 47.619 0.00 0.00 41.72 2.52
4310 6298 7.011389 GCATAGTTTATTTTGGAAGGAATTGCC 59.989 37.037 0.00 0.00 0.00 4.52
4311 6299 7.254084 CGCATAGTTTATTTTGGAAGGAATTGC 60.254 37.037 0.00 0.00 0.00 3.56
4362 6350 3.758554 CCAAAGGAATTGTCGAGGTGAAT 59.241 43.478 0.00 0.00 37.32 2.57
4415 6403 4.196971 GTCTCAAACCAAGTACACCAAGT 58.803 43.478 0.00 0.00 0.00 3.16
4437 6425 3.667360 TGTCTGTGATGACACCTTCATG 58.333 45.455 0.00 0.00 45.67 3.07
4447 6435 1.973515 AGCTTGGAGTGTCTGTGATGA 59.026 47.619 0.00 0.00 0.00 2.92
4453 6441 1.602311 AAGCAAGCTTGGAGTGTCTG 58.398 50.000 27.10 0.00 34.60 3.51
4454 6442 2.225467 GAAAGCAAGCTTGGAGTGTCT 58.775 47.619 27.10 11.97 36.26 3.41
4459 6496 0.239347 CGTGGAAAGCAAGCTTGGAG 59.761 55.000 27.10 3.04 36.26 3.86
4461 6498 0.239347 CTCGTGGAAAGCAAGCTTGG 59.761 55.000 27.10 9.80 36.26 3.61
4465 6502 2.350484 GGTAAACTCGTGGAAAGCAAGC 60.350 50.000 0.00 0.00 0.00 4.01
4469 6506 3.549423 GGTTTGGTAAACTCGTGGAAAGC 60.549 47.826 4.65 0.00 41.14 3.51
4477 6514 3.007979 GCAAAGGGTTTGGTAAACTCG 57.992 47.619 4.65 0.00 46.52 4.18
4585 6626 3.340814 TGAGTGCTTGAAGAGATTCCC 57.659 47.619 0.00 0.00 0.00 3.97
4619 6660 3.974871 TTTACGAACTCAAACAAGCCC 57.025 42.857 0.00 0.00 0.00 5.19
4620 6661 5.086727 GCTATTTACGAACTCAAACAAGCC 58.913 41.667 0.00 0.00 0.00 4.35
4634 6675 6.920569 ATAAACTCCACAAGGCTATTTACG 57.079 37.500 0.00 0.00 33.74 3.18
4640 6681 5.428253 CTTGCTATAAACTCCACAAGGCTA 58.572 41.667 0.00 0.00 32.76 3.93
4649 6690 4.585879 TGTCCAACCTTGCTATAAACTCC 58.414 43.478 0.00 0.00 0.00 3.85
4665 6706 5.730296 TTTGAAAAGTCCAAGTTGTCCAA 57.270 34.783 1.45 0.00 0.00 3.53
4676 6717 5.109210 CAACCTCCTTGTTTTGAAAAGTCC 58.891 41.667 0.00 0.00 0.00 3.85
4736 6777 5.684550 AATGGACGTTTAAAGTGTTCTCC 57.315 39.130 0.00 0.00 0.00 3.71
4739 6780 7.320499 CATCAAATGGACGTTTAAAGTGTTC 57.680 36.000 0.00 0.00 0.00 3.18
4773 6814 1.571919 CTTATGCTAGCCACCACGAC 58.428 55.000 13.29 0.00 0.00 4.34
4782 6823 5.760253 TGGTATTCTTCTTGCTTATGCTAGC 59.240 40.000 8.10 8.10 40.83 3.42
4805 6846 6.347969 CCTCATGACACGCCTTGAATATATTG 60.348 42.308 1.78 0.00 0.00 1.90
4810 6851 2.905075 CCTCATGACACGCCTTGAATA 58.095 47.619 0.00 0.00 0.00 1.75
4814 6855 2.401766 GGCCTCATGACACGCCTTG 61.402 63.158 13.96 0.00 38.41 3.61
4831 6872 2.838736 AGACTTTAGTGCGGCATATGG 58.161 47.619 5.72 0.00 0.00 2.74
4843 6884 8.576442 ACACCCAAATTGAATGTTAGACTTTAG 58.424 33.333 0.00 0.00 0.00 1.85
4844 6885 8.472007 ACACCCAAATTGAATGTTAGACTTTA 57.528 30.769 0.00 0.00 0.00 1.85
4845 6886 7.360113 ACACCCAAATTGAATGTTAGACTTT 57.640 32.000 0.00 0.00 0.00 2.66
4846 6887 6.976934 ACACCCAAATTGAATGTTAGACTT 57.023 33.333 0.00 0.00 0.00 3.01
4847 6888 6.433093 GGTACACCCAAATTGAATGTTAGACT 59.567 38.462 7.25 0.00 0.00 3.24
4848 6889 6.617879 GGTACACCCAAATTGAATGTTAGAC 58.382 40.000 7.25 1.63 0.00 2.59
4849 6890 6.827586 GGTACACCCAAATTGAATGTTAGA 57.172 37.500 7.25 0.00 0.00 2.10
4870 6911 1.992277 AGCCTCATCGCTCAAGGGT 60.992 57.895 0.00 0.00 32.06 4.34
4880 6921 3.122297 CGACAATCTTCTCAGCCTCATC 58.878 50.000 0.00 0.00 0.00 2.92
4890 6931 5.471257 GGTAGAACACTTCGACAATCTTCT 58.529 41.667 0.00 0.00 37.07 2.85
4919 6960 3.628989 CCATACGGCCCTCTCACA 58.371 61.111 0.00 0.00 0.00 3.58
4929 6970 1.831736 CCTAGGGGATAAGCCATACGG 59.168 57.143 0.00 0.00 38.95 4.02
4930 6971 1.207329 GCCTAGGGGATAAGCCATACG 59.793 57.143 11.72 0.00 38.95 3.06
4932 6973 3.291626 AAGCCTAGGGGATAAGCCATA 57.708 47.619 11.72 0.00 38.95 2.74
4950 7011 7.689812 CGCTTGTAGAGAAAATCATGTGTAAAG 59.310 37.037 0.00 0.00 0.00 1.85
4952 7013 6.649141 ACGCTTGTAGAGAAAATCATGTGTAA 59.351 34.615 0.00 0.00 30.84 2.41
4953 7014 6.090763 CACGCTTGTAGAGAAAATCATGTGTA 59.909 38.462 0.00 0.00 31.21 2.90
5021 7082 8.458843 GTTGGTATGATATGTTGTTAGCAAACT 58.541 33.333 0.00 0.00 36.22 2.66
5024 7085 8.046708 AGAGTTGGTATGATATGTTGTTAGCAA 58.953 33.333 0.00 0.00 0.00 3.91
5044 7105 2.806945 TAGAATGCCCCCAAGAGTTG 57.193 50.000 0.00 0.00 0.00 3.16
5056 7117 3.367395 GGTTCCACAGGCTTTTAGAATGC 60.367 47.826 0.00 0.00 0.00 3.56
5057 7118 4.082125 AGGTTCCACAGGCTTTTAGAATG 58.918 43.478 0.00 0.00 0.00 2.67
5062 7123 3.876309 AGAAGGTTCCACAGGCTTTTA 57.124 42.857 0.00 0.00 0.00 1.52
5063 7124 2.755952 AGAAGGTTCCACAGGCTTTT 57.244 45.000 0.00 0.00 0.00 2.27
5064 7125 2.979678 TCTAGAAGGTTCCACAGGCTTT 59.020 45.455 0.00 0.00 0.00 3.51
5067 7128 4.755266 TTATCTAGAAGGTTCCACAGGC 57.245 45.455 0.00 0.00 0.00 4.85
5069 7130 9.921637 GAAGATATTATCTAGAAGGTTCCACAG 57.078 37.037 6.62 0.00 39.08 3.66
5094 7155 7.374271 AGATTAAGAGGGAGGAGGATTTTAGA 58.626 38.462 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.