Multiple sequence alignment - TraesCS1D01G265000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G265000 chr1D 100.000 6181 0 0 1 6181 360888952 360882772 0.000000e+00 11415.0
1 TraesCS1D01G265000 chr1D 94.211 190 9 2 3798 3986 328793548 328793360 7.840000e-74 289.0
2 TraesCS1D01G265000 chr1D 76.736 288 47 16 5859 6135 393686364 393686642 6.460000e-30 143.0
3 TraesCS1D01G265000 chr1D 82.822 163 23 4 5865 6027 365087364 365087207 2.320000e-29 141.0
4 TraesCS1D01G265000 chr1D 73.494 249 41 19 5947 6181 478175125 478174888 3.090000e-08 71.3
5 TraesCS1D01G265000 chr1B 91.375 3710 177 62 46 3690 483119613 483115982 0.000000e+00 4946.0
6 TraesCS1D01G265000 chr1B 93.786 1754 67 18 4057 5794 483115950 483114223 0.000000e+00 2597.0
7 TraesCS1D01G265000 chr1B 83.375 397 38 17 5790 6180 482944805 482944431 5.930000e-90 342.0
8 TraesCS1D01G265000 chr1B 100.000 28 0 0 6 33 483119639 483119612 1.100000e-02 52.8
9 TraesCS1D01G265000 chr1A 93.284 2144 99 20 4057 6181 460554755 460552638 0.000000e+00 3120.0
10 TraesCS1D01G265000 chr1A 89.846 2403 106 57 46 2387 460558642 460556317 0.000000e+00 2959.0
11 TraesCS1D01G265000 chr1A 86.754 1140 121 20 2640 3764 460555862 460554738 0.000000e+00 1242.0
12 TraesCS1D01G265000 chr1A 89.496 238 17 2 2375 2612 460556256 460556027 1.680000e-75 294.0
13 TraesCS1D01G265000 chr1A 81.111 90 8 7 3756 3840 78543761 78543846 5.170000e-06 63.9
14 TraesCS1D01G265000 chr7B 92.193 269 14 4 939 1206 630115210 630114948 2.100000e-99 374.0
15 TraesCS1D01G265000 chr7B 90.638 235 9 5 3765 3986 166624900 166625134 3.620000e-77 300.0
16 TraesCS1D01G265000 chr7B 77.126 341 54 20 5856 6181 705250647 705250978 6.370000e-40 176.0
17 TraesCS1D01G265000 chr7B 97.403 77 2 0 3983 4059 743546701 743546625 1.400000e-26 132.0
18 TraesCS1D01G265000 chr5B 90.871 241 7 5 3759 3986 176590312 176590074 6.020000e-80 309.0
19 TraesCS1D01G265000 chr7A 97.238 181 5 0 3806 3986 260000972 260000792 2.160000e-79 307.0
20 TraesCS1D01G265000 chr7A 83.645 214 17 5 1304 1517 539454109 539454304 1.060000e-42 185.0
21 TraesCS1D01G265000 chr7A 81.731 208 28 8 5859 6062 283147634 283147835 1.380000e-36 165.0
22 TraesCS1D01G265000 chr3D 97.714 175 4 0 3807 3981 19753315 19753489 1.010000e-77 302.0
23 TraesCS1D01G265000 chr3D 77.455 275 43 17 5829 6094 388785851 388786115 4.990000e-31 147.0
24 TraesCS1D01G265000 chr3D 96.386 83 3 0 3977 4059 481893787 481893869 3.000000e-28 137.0
25 TraesCS1D01G265000 chr3D 76.087 276 43 19 5829 6097 66409167 66409426 8.410000e-24 122.0
26 TraesCS1D01G265000 chr3D 77.833 203 32 7 5895 6096 471394026 471393836 5.060000e-21 113.0
27 TraesCS1D01G265000 chr4B 96.111 180 7 0 3807 3986 606822097 606821918 1.680000e-75 294.0
28 TraesCS1D01G265000 chr4B 96.341 82 3 0 3977 4058 10509790 10509871 1.080000e-27 135.0
29 TraesCS1D01G265000 chr5D 94.241 191 9 2 3798 3987 551375911 551376100 2.180000e-74 291.0
30 TraesCS1D01G265000 chr5D 75.806 248 38 15 5839 6084 287405803 287405576 8.470000e-19 106.0
31 TraesCS1D01G265000 chr4D 88.525 244 22 6 3746 3986 95040579 95040339 2.180000e-74 291.0
32 TraesCS1D01G265000 chr4D 81.498 227 34 7 5829 6054 350560585 350560366 4.920000e-41 180.0
33 TraesCS1D01G265000 chr4D 83.523 176 25 4 5853 6026 80823248 80823421 1.780000e-35 161.0
34 TraesCS1D01G265000 chr2A 88.496 226 23 3 3764 3986 27080009 27080234 2.840000e-68 270.0
35 TraesCS1D01G265000 chr7D 80.075 266 45 7 5849 6112 91703239 91702980 2.270000e-44 191.0
36 TraesCS1D01G265000 chr7D 77.219 338 47 25 5859 6179 613865377 613865701 2.960000e-38 171.0
37 TraesCS1D01G265000 chr6B 83.333 192 27 4 5829 6017 576252572 576252761 8.240000e-39 172.0
38 TraesCS1D01G265000 chr6A 81.383 188 26 6 5834 6021 542699347 542699169 1.800000e-30 145.0
39 TraesCS1D01G265000 chr6A 97.403 77 2 0 3983 4059 335743563 335743639 1.400000e-26 132.0
40 TraesCS1D01G265000 chr2B 98.701 77 1 0 3983 4059 159865341 159865265 3.000000e-28 137.0
41 TraesCS1D01G265000 chr2B 97.403 77 2 0 3983 4059 788092405 788092329 1.400000e-26 132.0
42 TraesCS1D01G265000 chr2B 96.203 79 3 0 3983 4061 597734423 597734345 5.030000e-26 130.0
43 TraesCS1D01G265000 chr6D 97.403 77 2 0 3983 4059 336516057 336515981 1.400000e-26 132.0
44 TraesCS1D01G265000 chr3B 97.403 77 2 0 3983 4059 227104281 227104205 1.400000e-26 132.0
45 TraesCS1D01G265000 chr3B 92.105 38 3 0 3765 3802 578599200 578599237 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G265000 chr1D 360882772 360888952 6180 True 11415.000000 11415 100.000000 1 6181 1 chr1D.!!$R2 6180
1 TraesCS1D01G265000 chr1B 483114223 483119639 5416 True 2531.933333 4946 95.053667 6 5794 3 chr1B.!!$R2 5788
2 TraesCS1D01G265000 chr1A 460552638 460558642 6004 True 1903.750000 3120 89.845000 46 6181 4 chr1A.!!$R1 6135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.036875 GAGGGGTTCAGTTCAGTGGG 59.963 60.0 0.00 0.00 0.00 4.61 F
540 600 0.104120 TCTCTCTCTCTCTCTCGCCG 59.896 60.0 0.00 0.00 0.00 6.46 F
541 601 0.104120 CTCTCTCTCTCTCTCGCCGA 59.896 60.0 0.00 0.00 0.00 5.54 F
542 602 0.179094 TCTCTCTCTCTCTCGCCGAC 60.179 60.0 0.00 0.00 0.00 4.79 F
562 622 0.318441 CCATACACAGGCGATCGGAT 59.682 55.0 18.30 0.00 0.00 4.18 F
1926 2043 0.618981 CCTACAACCAGGACCTTCCC 59.381 60.0 0.00 0.00 37.19 3.97 F
3793 4134 0.257905 AAAGGAGAATTACCCCCGGC 59.742 55.0 0.00 0.00 0.00 6.13 F
3919 4260 0.107017 CTTGATGAAGGGGTGCCGAT 60.107 55.0 0.00 0.00 0.00 4.18 F
4010 4351 0.387367 GACGCACTCTCATGTGTCGT 60.387 55.0 13.43 13.43 46.77 4.34 F
4011 4352 0.387367 ACGCACTCTCATGTGTCGTC 60.387 55.0 9.77 0.00 42.25 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1410 0.401395 AGTGGAAGTGGAGGTGGGAA 60.401 55.000 0.00 0.00 0.00 3.97 R
2301 2418 0.179936 CCATGGAAGAGTGCTCCTCC 59.820 60.000 5.56 9.35 41.47 4.30 R
2494 2685 5.997746 TCAACTGAAAAGAGAAGTGGGTATG 59.002 40.000 0.00 0.00 0.00 2.39 R
2514 2705 7.043854 GCAATTGAGCATGTATGTACAATCAAC 60.044 37.037 10.34 0.00 38.66 3.18 R
2597 2788 1.585668 CATTAGTGACTCGAGCTTGCG 59.414 52.381 13.61 0.00 0.00 4.85 R
3896 4237 0.038166 GCACCCCTTCATCAAGTGGA 59.962 55.000 0.00 0.00 31.72 4.02 R
4806 5162 0.738975 TCGTCTTGTCGCTCCCATAG 59.261 55.000 0.00 0.00 0.00 2.23 R
4826 5182 0.812811 TCATCTTCTGCTGATGCGCC 60.813 55.000 4.18 0.00 43.34 6.53 R
5153 5509 3.104512 CATACCACTGTCTGGAACCCTA 58.895 50.000 0.00 0.00 43.95 3.53 R
5671 6031 3.657727 TCTCCCTCAACAATCCCTTCTTT 59.342 43.478 0.00 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.739371 GCGCGGGAGTTCAGAATTAGT 60.739 52.381 8.83 0.00 0.00 2.24
34 35 1.927174 CGCGGGAGTTCAGAATTAGTG 59.073 52.381 0.00 0.00 0.00 2.74
35 36 2.674177 CGCGGGAGTTCAGAATTAGTGT 60.674 50.000 0.00 0.00 0.00 3.55
36 37 2.673368 GCGGGAGTTCAGAATTAGTGTG 59.327 50.000 0.00 0.00 0.00 3.82
37 38 3.616560 GCGGGAGTTCAGAATTAGTGTGA 60.617 47.826 0.00 0.00 0.00 3.58
38 39 4.177026 CGGGAGTTCAGAATTAGTGTGAG 58.823 47.826 0.00 0.00 0.00 3.51
39 40 3.935828 GGGAGTTCAGAATTAGTGTGAGC 59.064 47.826 0.00 0.00 0.00 4.26
40 41 3.614616 GGAGTTCAGAATTAGTGTGAGCG 59.385 47.826 0.00 0.00 0.00 5.03
41 42 4.486090 GAGTTCAGAATTAGTGTGAGCGA 58.514 43.478 0.00 0.00 0.00 4.93
42 43 4.489810 AGTTCAGAATTAGTGTGAGCGAG 58.510 43.478 0.00 0.00 0.00 5.03
43 44 3.510388 TCAGAATTAGTGTGAGCGAGG 57.490 47.619 0.00 0.00 0.00 4.63
44 45 2.166459 TCAGAATTAGTGTGAGCGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
63 64 0.036875 GAGGGGTTCAGTTCAGTGGG 59.963 60.000 0.00 0.00 0.00 4.61
64 65 0.401395 AGGGGTTCAGTTCAGTGGGA 60.401 55.000 0.00 0.00 0.00 4.37
117 118 1.164041 CCTTGCACGACGAGGGTTTT 61.164 55.000 0.00 0.00 45.41 2.43
121 122 1.202557 TGCACGACGAGGGTTTTACTT 60.203 47.619 0.00 0.00 0.00 2.24
122 123 2.035704 TGCACGACGAGGGTTTTACTTA 59.964 45.455 0.00 0.00 0.00 2.24
123 124 2.665052 GCACGACGAGGGTTTTACTTAG 59.335 50.000 0.00 0.00 0.00 2.18
170 174 4.514401 AGCGGTTCTTATCTAAAACAGGG 58.486 43.478 0.00 0.00 0.00 4.45
185 189 2.281900 GGGCCAAAGCACCGTACA 60.282 61.111 4.39 0.00 42.56 2.90
209 213 2.278142 GGCGCCGAATGTGATTGC 60.278 61.111 12.58 0.00 0.00 3.56
327 345 3.526931 ACGCGTGTAGAGGTAGTACTA 57.473 47.619 12.93 0.00 0.00 1.82
331 349 3.562973 GCGTGTAGAGGTAGTACTATGCA 59.437 47.826 5.75 0.00 0.00 3.96
414 439 1.982073 GATGTTACTGCCGCTGCACC 61.982 60.000 0.00 0.00 44.23 5.01
490 546 1.727857 GCGTTCTGCCAATTTACCACG 60.728 52.381 0.00 0.00 37.76 4.94
527 587 1.412937 GGCCCTTCTCCATCTCTCTCT 60.413 57.143 0.00 0.00 0.00 3.10
531 591 3.139025 CCCTTCTCCATCTCTCTCTCTCT 59.861 52.174 0.00 0.00 0.00 3.10
532 592 4.392940 CCTTCTCCATCTCTCTCTCTCTC 58.607 52.174 0.00 0.00 0.00 3.20
533 593 4.103785 CCTTCTCCATCTCTCTCTCTCTCT 59.896 50.000 0.00 0.00 0.00 3.10
534 594 4.963318 TCTCCATCTCTCTCTCTCTCTC 57.037 50.000 0.00 0.00 0.00 3.20
535 595 4.560739 TCTCCATCTCTCTCTCTCTCTCT 58.439 47.826 0.00 0.00 0.00 3.10
536 596 4.590647 TCTCCATCTCTCTCTCTCTCTCTC 59.409 50.000 0.00 0.00 0.00 3.20
537 597 3.321968 TCCATCTCTCTCTCTCTCTCTCG 59.678 52.174 0.00 0.00 0.00 4.04
538 598 2.890808 TCTCTCTCTCTCTCTCTCGC 57.109 55.000 0.00 0.00 0.00 5.03
539 599 1.412710 TCTCTCTCTCTCTCTCTCGCC 59.587 57.143 0.00 0.00 0.00 5.54
540 600 0.104120 TCTCTCTCTCTCTCTCGCCG 59.896 60.000 0.00 0.00 0.00 6.46
541 601 0.104120 CTCTCTCTCTCTCTCGCCGA 59.896 60.000 0.00 0.00 0.00 5.54
542 602 0.179094 TCTCTCTCTCTCTCGCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
543 603 1.153329 TCTCTCTCTCTCGCCGACC 60.153 63.158 0.00 0.00 0.00 4.79
544 604 2.124653 TCTCTCTCTCGCCGACCC 60.125 66.667 0.00 0.00 0.00 4.46
545 605 2.438614 CTCTCTCTCGCCGACCCA 60.439 66.667 0.00 0.00 0.00 4.51
546 606 1.826054 CTCTCTCTCGCCGACCCAT 60.826 63.158 0.00 0.00 0.00 4.00
547 607 0.535328 CTCTCTCTCGCCGACCCATA 60.535 60.000 0.00 0.00 0.00 2.74
548 608 0.818445 TCTCTCTCGCCGACCCATAC 60.818 60.000 0.00 0.00 0.00 2.39
549 609 1.077285 TCTCTCGCCGACCCATACA 60.077 57.895 0.00 0.00 0.00 2.29
550 610 1.065928 CTCTCGCCGACCCATACAC 59.934 63.158 0.00 0.00 0.00 2.90
551 611 1.663379 CTCTCGCCGACCCATACACA 61.663 60.000 0.00 0.00 0.00 3.72
552 612 1.226974 CTCGCCGACCCATACACAG 60.227 63.158 0.00 0.00 0.00 3.66
553 613 2.202878 CGCCGACCCATACACAGG 60.203 66.667 0.00 0.00 0.00 4.00
554 614 2.513897 GCCGACCCATACACAGGC 60.514 66.667 0.00 0.00 37.61 4.85
555 615 2.202878 CCGACCCATACACAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
556 616 2.717044 CCGACCCATACACAGGCGA 61.717 63.158 0.00 0.00 0.00 5.54
557 617 1.441729 CGACCCATACACAGGCGAT 59.558 57.895 0.00 0.00 0.00 4.58
558 618 0.597637 CGACCCATACACAGGCGATC 60.598 60.000 0.00 0.00 0.00 3.69
559 619 0.597637 GACCCATACACAGGCGATCG 60.598 60.000 11.69 11.69 0.00 3.69
560 620 1.300931 CCCATACACAGGCGATCGG 60.301 63.158 18.30 2.45 0.00 4.18
561 621 1.739667 CCATACACAGGCGATCGGA 59.260 57.895 18.30 0.00 0.00 4.55
562 622 0.318441 CCATACACAGGCGATCGGAT 59.682 55.000 18.30 0.00 0.00 4.18
581 641 1.518572 CGACCCATACACAGGCGAC 60.519 63.158 0.00 0.00 0.00 5.19
868 950 1.524355 CTCAGTGTTGTTCAGTGCTCG 59.476 52.381 0.00 0.00 44.56 5.03
919 1001 2.912025 CCCACGCCACCTTTGCTT 60.912 61.111 0.00 0.00 0.00 3.91
920 1002 2.336088 CCACGCCACCTTTGCTTG 59.664 61.111 0.00 0.00 0.00 4.01
921 1003 2.355009 CACGCCACCTTTGCTTGC 60.355 61.111 0.00 0.00 0.00 4.01
922 1004 2.519302 ACGCCACCTTTGCTTGCT 60.519 55.556 0.00 0.00 0.00 3.91
944 1048 3.964875 CGCGCTTGTTTGGGCACT 61.965 61.111 5.56 0.00 44.61 4.40
945 1049 2.612567 CGCGCTTGTTTGGGCACTA 61.613 57.895 5.56 0.00 44.61 2.74
1443 1557 2.354729 CCGAATGGAGTGCCCCAA 59.645 61.111 0.00 0.00 40.04 4.12
1611 1725 1.902432 GGCCTCCTACGACGCCTAT 60.902 63.158 0.00 0.00 37.26 2.57
1620 1734 1.471119 ACGACGCCTATCCTTCTTCA 58.529 50.000 0.00 0.00 0.00 3.02
1635 1749 4.570505 CCTTCTTCATTCCCAATCCCAGAA 60.571 45.833 0.00 0.00 0.00 3.02
1926 2043 0.618981 CCTACAACCAGGACCTTCCC 59.381 60.000 0.00 0.00 37.19 3.97
1943 2060 2.802719 TCCCCACTACAATCAAAAGGC 58.197 47.619 0.00 0.00 0.00 4.35
1968 2085 4.471726 CCGGACGGGTCGTTCTCG 62.472 72.222 0.00 1.70 46.72 4.04
2225 2342 1.721926 GAGCGTTTGTAGCTGTGACTC 59.278 52.381 0.00 0.00 46.13 3.36
2301 2418 1.187087 AGGTGAAGAGGGTAAGCTCG 58.813 55.000 0.00 0.00 0.00 5.03
2454 2645 0.688087 GGATCCTTGAGGTCGGGAGT 60.688 60.000 3.84 0.00 36.34 3.85
2484 2675 1.142465 AGACCGCGGAGTAGGATCTTA 59.858 52.381 35.90 0.00 0.00 2.10
2494 2685 5.463724 CGGAGTAGGATCTTAAAATGTGAGC 59.536 44.000 0.00 0.00 0.00 4.26
2514 2705 4.583871 AGCATACCCACTTCTCTTTTCAG 58.416 43.478 0.00 0.00 0.00 3.02
2597 2788 2.416972 CCTAACAGCGTCAGACCCTAAC 60.417 54.545 0.00 0.00 0.00 2.34
2606 2797 1.078759 CAGACCCTAACGCAAGCTCG 61.079 60.000 0.00 0.00 45.62 5.03
2731 3065 7.811236 ACTTTGTCTGCATTTTTCAGTGATATG 59.189 33.333 0.00 0.00 33.48 1.78
2738 3072 8.523523 TGCATTTTTCAGTGATATGTTTCTTG 57.476 30.769 0.00 0.00 0.00 3.02
2857 3191 2.598589 CGGAACAATCAGCAATTGGTG 58.401 47.619 27.73 27.73 45.48 4.17
2964 3298 5.124457 CAGATTGTATGTGTGGGAGAAAAGG 59.876 44.000 0.00 0.00 0.00 3.11
2993 3327 5.367937 ACAAGGAGATCATGGTATGCTACTT 59.632 40.000 0.00 0.00 0.00 2.24
2997 3331 5.406780 GGAGATCATGGTATGCTACTTTTCG 59.593 44.000 0.00 0.00 0.00 3.46
3004 3338 9.256477 TCATGGTATGCTACTTTTCGTTATAAG 57.744 33.333 0.00 0.00 0.00 1.73
3008 3342 8.762426 GGTATGCTACTTTTCGTTATAAGAAGG 58.238 37.037 0.00 0.00 0.00 3.46
3012 3346 6.592994 GCTACTTTTCGTTATAAGAAGGGTGT 59.407 38.462 0.00 0.00 0.00 4.16
3021 3355 8.755977 TCGTTATAAGAAGGGTGTCTTTATTCT 58.244 33.333 0.00 0.00 38.75 2.40
3022 3356 8.818057 CGTTATAAGAAGGGTGTCTTTATTCTG 58.182 37.037 0.00 0.00 38.75 3.02
3024 3358 5.584551 AAGAAGGGTGTCTTTATTCTGGT 57.415 39.130 0.00 0.00 34.03 4.00
3031 3365 6.012858 AGGGTGTCTTTATTCTGGTTGTCATA 60.013 38.462 0.00 0.00 0.00 2.15
3034 3368 8.398665 GGTGTCTTTATTCTGGTTGTCATAATC 58.601 37.037 0.00 0.00 0.00 1.75
3073 3407 6.114187 TCTCAGAAGTTCAAAGCCTGATAA 57.886 37.500 5.50 0.00 33.95 1.75
3089 3423 5.295950 CCTGATAATGCTCTCAAACTCGAT 58.704 41.667 0.00 0.00 0.00 3.59
3093 3427 7.436933 TGATAATGCTCTCAAACTCGATGTAT 58.563 34.615 0.00 0.00 0.00 2.29
3095 3429 5.980698 ATGCTCTCAAACTCGATGTATTG 57.019 39.130 0.00 0.00 0.00 1.90
3098 3432 5.700832 TGCTCTCAAACTCGATGTATTGTTT 59.299 36.000 0.00 0.00 33.56 2.83
3109 3443 6.169800 TCGATGTATTGTTTTCCATCTGTCA 58.830 36.000 0.00 0.00 33.24 3.58
3113 3447 6.434596 TGTATTGTTTTCCATCTGTCAAACG 58.565 36.000 0.00 0.00 32.73 3.60
3114 3448 4.974368 TTGTTTTCCATCTGTCAAACGT 57.026 36.364 0.00 0.00 32.73 3.99
3115 3449 6.627395 ATTGTTTTCCATCTGTCAAACGTA 57.373 33.333 0.00 0.00 32.73 3.57
3140 3474 3.057104 TGCTCTGAAATGCATTGGTTGAG 60.057 43.478 13.82 17.34 33.94 3.02
3143 3477 3.189080 TCTGAAATGCATTGGTTGAGTCG 59.811 43.478 13.82 2.31 0.00 4.18
3144 3478 3.145286 TGAAATGCATTGGTTGAGTCGA 58.855 40.909 13.82 0.00 0.00 4.20
3145 3479 3.758023 TGAAATGCATTGGTTGAGTCGAT 59.242 39.130 13.82 0.00 0.00 3.59
3146 3480 4.940654 TGAAATGCATTGGTTGAGTCGATA 59.059 37.500 13.82 0.00 0.00 2.92
3147 3481 5.589855 TGAAATGCATTGGTTGAGTCGATAT 59.410 36.000 13.82 0.00 0.00 1.63
3152 3486 4.261322 GCATTGGTTGAGTCGATATTGCAT 60.261 41.667 0.00 0.00 0.00 3.96
3161 3495 6.437928 TGAGTCGATATTGCATAAAATTGGC 58.562 36.000 0.00 0.00 0.00 4.52
3162 3496 6.262944 TGAGTCGATATTGCATAAAATTGGCT 59.737 34.615 0.00 0.00 0.00 4.75
3168 3502 7.811236 CGATATTGCATAAAATTGGCTCTCATT 59.189 33.333 0.00 0.00 0.00 2.57
3170 3504 5.013568 TGCATAAAATTGGCTCTCATTGG 57.986 39.130 0.00 0.00 0.00 3.16
3171 3505 4.467082 TGCATAAAATTGGCTCTCATTGGT 59.533 37.500 0.00 0.00 0.00 3.67
3174 3508 4.961438 AAAATTGGCTCTCATTGGTGTT 57.039 36.364 0.00 0.00 0.00 3.32
3175 3509 7.546358 CATAAAATTGGCTCTCATTGGTGTTA 58.454 34.615 0.00 0.00 0.00 2.41
3178 3513 6.610075 AATTGGCTCTCATTGGTGTTAAAT 57.390 33.333 0.00 0.00 0.00 1.40
3207 3542 6.978674 TTTACCTCTATCTATGGAGTGTGG 57.021 41.667 3.09 0.00 34.01 4.17
3209 3544 2.230025 CCTCTATCTATGGAGTGTGGCG 59.770 54.545 3.09 0.00 34.01 5.69
3210 3545 2.887783 CTCTATCTATGGAGTGTGGCGT 59.112 50.000 0.00 0.00 31.55 5.68
3211 3546 2.623416 TCTATCTATGGAGTGTGGCGTG 59.377 50.000 0.00 0.00 0.00 5.34
3212 3547 1.485124 ATCTATGGAGTGTGGCGTGA 58.515 50.000 0.00 0.00 0.00 4.35
3213 3548 1.485124 TCTATGGAGTGTGGCGTGAT 58.515 50.000 0.00 0.00 0.00 3.06
3219 3554 1.438651 GAGTGTGGCGTGATGCTTTA 58.561 50.000 0.00 0.00 45.43 1.85
3225 3560 2.916716 GTGGCGTGATGCTTTACATTTG 59.083 45.455 0.00 0.00 45.43 2.32
3232 3567 4.563976 GTGATGCTTTACATTTGTCATGCC 59.436 41.667 0.00 0.00 39.84 4.40
3233 3568 4.220163 TGATGCTTTACATTTGTCATGCCA 59.780 37.500 0.00 0.00 39.84 4.92
3236 3571 4.930405 TGCTTTACATTTGTCATGCCATTG 59.070 37.500 0.00 0.00 0.00 2.82
3240 3575 7.520292 GCTTTACATTTGTCATGCCATTGTTTT 60.520 33.333 0.00 0.00 0.00 2.43
3243 3578 7.982761 ACATTTGTCATGCCATTGTTTTTAT 57.017 28.000 0.00 0.00 0.00 1.40
3244 3579 8.393671 ACATTTGTCATGCCATTGTTTTTATT 57.606 26.923 0.00 0.00 0.00 1.40
3245 3580 9.499479 ACATTTGTCATGCCATTGTTTTTATTA 57.501 25.926 0.00 0.00 0.00 0.98
3248 3583 7.593875 TGTCATGCCATTGTTTTTATTAAGC 57.406 32.000 0.00 0.00 0.00 3.09
3249 3584 6.593382 TGTCATGCCATTGTTTTTATTAAGCC 59.407 34.615 0.00 0.00 0.00 4.35
3329 3664 0.883833 ACAAAGAATGGAAGCGCCTG 59.116 50.000 2.29 0.00 37.63 4.85
3344 3679 2.426522 CGCCTGAAAGAGTTGGATGAA 58.573 47.619 0.00 0.00 34.07 2.57
3356 3691 2.189594 TGGATGAAAGTGGTGCAGAG 57.810 50.000 0.00 0.00 0.00 3.35
3378 3713 6.601613 AGAGCCGTATAAAATTGATTCCACAA 59.398 34.615 0.00 0.00 0.00 3.33
3416 3751 6.926272 GGACACTACTCACCAGAATCAATATC 59.074 42.308 0.00 0.00 0.00 1.63
3422 3757 5.468072 ACTCACCAGAATCAATATCGCAATC 59.532 40.000 0.00 0.00 0.00 2.67
3431 3766 4.891260 TCAATATCGCAATCAGATCAGCT 58.109 39.130 0.00 0.00 0.00 4.24
3449 3784 8.646900 AGATCAGCTAAAGTTATTTCTAGGAGG 58.353 37.037 0.00 0.00 0.00 4.30
3524 3859 3.700038 AGGGGTATGTGAAGTCTAGTTCG 59.300 47.826 0.00 0.00 0.00 3.95
3527 3862 4.157289 GGGTATGTGAAGTCTAGTTCGACA 59.843 45.833 0.00 5.74 36.38 4.35
3528 3863 5.094134 GGTATGTGAAGTCTAGTTCGACAC 58.906 45.833 0.00 0.00 36.38 3.67
3531 3866 4.856664 TGTGAAGTCTAGTTCGACACTTC 58.143 43.478 11.09 11.09 43.40 3.01
3566 3902 7.069826 TGAGTTGATCTGAAAGGGTTGAAATTT 59.930 33.333 0.00 0.00 0.00 1.82
3568 3904 7.288621 AGTTGATCTGAAAGGGTTGAAATTTCT 59.711 33.333 18.64 0.00 34.70 2.52
3577 3913 9.705290 GAAAGGGTTGAAATTTCTAGCATTTAA 57.295 29.630 29.77 10.52 41.55 1.52
3603 3939 9.857656 ATATGTCTGTGAAATTGTTAGGATGAT 57.142 29.630 0.00 0.00 0.00 2.45
3606 3942 9.330063 TGTCTGTGAAATTGTTAGGATGATATC 57.670 33.333 0.00 0.00 0.00 1.63
3641 3981 7.504922 TTTTTGCAGTCGTAATGAATATTGC 57.495 32.000 0.00 0.00 0.00 3.56
3644 3984 5.115480 TGCAGTCGTAATGAATATTGCTGA 58.885 37.500 0.00 0.00 0.00 4.26
3646 3986 5.235186 GCAGTCGTAATGAATATTGCTGACT 59.765 40.000 0.00 0.00 40.01 3.41
3662 4003 5.685841 TGCTGACTTTGTTTAAATACGCTC 58.314 37.500 0.00 0.00 0.00 5.03
3676 4017 6.751514 AAATACGCTCCAATGTGTTGATAA 57.248 33.333 0.00 0.00 37.53 1.75
3683 4024 5.124457 GCTCCAATGTGTTGATAACATGTCT 59.876 40.000 0.00 0.00 44.35 3.41
3684 4025 6.676456 GCTCCAATGTGTTGATAACATGTCTC 60.676 42.308 0.00 0.00 44.35 3.36
3721 4062 4.328440 CACTACTGAGTGCTGCAATAGTTC 59.672 45.833 16.35 6.31 46.41 3.01
3727 4068 6.983307 ACTGAGTGCTGCAATAGTTCTAATAG 59.017 38.462 2.77 0.00 0.00 1.73
3729 4070 7.730084 TGAGTGCTGCAATAGTTCTAATAGAT 58.270 34.615 2.77 0.00 0.00 1.98
3730 4071 8.860088 TGAGTGCTGCAATAGTTCTAATAGATA 58.140 33.333 2.77 0.00 0.00 1.98
3764 4105 6.045072 TGAGAACCATCGTAACATTACCTT 57.955 37.500 0.00 0.00 0.00 3.50
3765 4106 6.469410 TGAGAACCATCGTAACATTACCTTT 58.531 36.000 0.00 0.00 0.00 3.11
3766 4107 6.938030 TGAGAACCATCGTAACATTACCTTTT 59.062 34.615 0.00 0.00 0.00 2.27
3767 4108 7.446013 TGAGAACCATCGTAACATTACCTTTTT 59.554 33.333 0.00 0.00 0.00 1.94
3790 4131 7.786046 TTTTTAGAAAAGGAGAATTACCCCC 57.214 36.000 0.00 0.00 0.00 5.40
3791 4132 3.646736 AGAAAAGGAGAATTACCCCCG 57.353 47.619 0.00 0.00 0.00 5.73
3792 4133 2.241430 AGAAAAGGAGAATTACCCCCGG 59.759 50.000 0.00 0.00 0.00 5.73
3793 4134 0.257905 AAAGGAGAATTACCCCCGGC 59.742 55.000 0.00 0.00 0.00 6.13
3794 4135 1.642513 AAGGAGAATTACCCCCGGCC 61.643 60.000 0.00 0.00 0.00 6.13
3795 4136 2.076803 GGAGAATTACCCCCGGCCT 61.077 63.158 0.00 0.00 0.00 5.19
3796 4137 1.450642 GAGAATTACCCCCGGCCTC 59.549 63.158 0.00 0.00 0.00 4.70
3797 4138 1.004361 AGAATTACCCCCGGCCTCT 59.996 57.895 0.00 0.00 0.00 3.69
3798 4139 1.148498 GAATTACCCCCGGCCTCTG 59.852 63.158 0.00 0.00 0.00 3.35
3799 4140 2.960359 GAATTACCCCCGGCCTCTGC 62.960 65.000 0.00 0.00 0.00 4.26
3801 4142 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
3803 4144 2.900269 TACCCCCGGCCTCTGCATTA 62.900 60.000 0.00 0.00 40.13 1.90
3804 4145 2.111878 CCCCGGCCTCTGCATTAG 59.888 66.667 0.00 0.00 40.13 1.73
3805 4146 2.111878 CCCGGCCTCTGCATTAGG 59.888 66.667 10.27 10.27 40.13 2.69
3815 4156 5.796424 CCTCTGCATTAGGCCATTTTATT 57.204 39.130 5.01 0.00 43.89 1.40
3816 4157 6.899393 CCTCTGCATTAGGCCATTTTATTA 57.101 37.500 5.01 0.00 43.89 0.98
3817 4158 7.288810 CCTCTGCATTAGGCCATTTTATTAA 57.711 36.000 5.01 0.00 43.89 1.40
3818 4159 7.899973 CCTCTGCATTAGGCCATTTTATTAAT 58.100 34.615 5.01 0.00 43.89 1.40
3819 4160 8.370182 CCTCTGCATTAGGCCATTTTATTAATT 58.630 33.333 5.01 0.00 43.89 1.40
3844 4185 9.841295 TTATTCACAAAGACCTTACAAAGTAGT 57.159 29.630 0.00 0.00 0.00 2.73
3846 4187 8.652810 TTCACAAAGACCTTACAAAGTAGTAC 57.347 34.615 0.00 0.00 0.00 2.73
3847 4188 7.784037 TCACAAAGACCTTACAAAGTAGTACA 58.216 34.615 2.52 0.00 0.00 2.90
3848 4189 8.426489 TCACAAAGACCTTACAAAGTAGTACAT 58.574 33.333 2.52 0.00 0.00 2.29
3849 4190 9.052759 CACAAAGACCTTACAAAGTAGTACATT 57.947 33.333 2.52 0.00 0.00 2.71
3852 4193 9.939802 AAAGACCTTACAAAGTAGTACATTAGG 57.060 33.333 2.52 3.83 0.00 2.69
3853 4194 8.661752 AGACCTTACAAAGTAGTACATTAGGT 57.338 34.615 9.81 9.81 35.33 3.08
3854 4195 9.759473 AGACCTTACAAAGTAGTACATTAGGTA 57.241 33.333 9.95 0.00 33.70 3.08
3856 4197 9.539194 ACCTTACAAAGTAGTACATTAGGTAGT 57.461 33.333 8.71 0.00 39.06 2.73
3860 4201 8.874744 ACAAAGTAGTACATTAGGTAGTCTGA 57.125 34.615 2.52 0.00 36.94 3.27
3861 4202 9.305555 ACAAAGTAGTACATTAGGTAGTCTGAA 57.694 33.333 2.52 0.00 36.94 3.02
3862 4203 9.790389 CAAAGTAGTACATTAGGTAGTCTGAAG 57.210 37.037 2.52 0.00 36.94 3.02
3863 4204 7.571080 AGTAGTACATTAGGTAGTCTGAAGC 57.429 40.000 2.52 0.00 36.94 3.86
3864 4205 5.855740 AGTACATTAGGTAGTCTGAAGCC 57.144 43.478 0.00 0.00 29.37 4.35
3865 4206 5.269991 AGTACATTAGGTAGTCTGAAGCCA 58.730 41.667 0.00 0.00 29.37 4.75
3866 4207 4.473477 ACATTAGGTAGTCTGAAGCCAC 57.527 45.455 0.00 0.00 0.00 5.01
3867 4208 3.197983 ACATTAGGTAGTCTGAAGCCACC 59.802 47.826 0.00 0.00 0.00 4.61
3868 4209 2.615986 TAGGTAGTCTGAAGCCACCA 57.384 50.000 0.00 0.00 0.00 4.17
3869 4210 1.958288 AGGTAGTCTGAAGCCACCAT 58.042 50.000 0.00 0.00 0.00 3.55
3870 4211 1.834263 AGGTAGTCTGAAGCCACCATC 59.166 52.381 0.00 0.00 0.00 3.51
3871 4212 1.834263 GGTAGTCTGAAGCCACCATCT 59.166 52.381 0.00 0.00 0.00 2.90
3872 4213 2.237392 GGTAGTCTGAAGCCACCATCTT 59.763 50.000 0.00 0.00 0.00 2.40
3873 4214 3.451178 GGTAGTCTGAAGCCACCATCTTA 59.549 47.826 0.00 0.00 0.00 2.10
3874 4215 3.902881 AGTCTGAAGCCACCATCTTAG 57.097 47.619 0.00 0.00 0.00 2.18
3875 4216 2.093235 AGTCTGAAGCCACCATCTTAGC 60.093 50.000 0.00 0.00 0.00 3.09
3876 4217 1.908619 TCTGAAGCCACCATCTTAGCA 59.091 47.619 0.00 0.00 0.00 3.49
3877 4218 2.305635 TCTGAAGCCACCATCTTAGCAA 59.694 45.455 0.00 0.00 0.00 3.91
3878 4219 2.421424 CTGAAGCCACCATCTTAGCAAC 59.579 50.000 0.00 0.00 0.00 4.17
3879 4220 2.224744 TGAAGCCACCATCTTAGCAACA 60.225 45.455 0.00 0.00 0.00 3.33
3880 4221 2.814805 AGCCACCATCTTAGCAACAT 57.185 45.000 0.00 0.00 0.00 2.71
3881 4222 3.091633 AGCCACCATCTTAGCAACATT 57.908 42.857 0.00 0.00 0.00 2.71
3882 4223 3.434309 AGCCACCATCTTAGCAACATTT 58.566 40.909 0.00 0.00 0.00 2.32
3883 4224 3.194116 AGCCACCATCTTAGCAACATTTG 59.806 43.478 0.00 0.00 0.00 2.32
3884 4225 3.056607 GCCACCATCTTAGCAACATTTGT 60.057 43.478 0.00 0.00 0.00 2.83
3885 4226 4.737054 CCACCATCTTAGCAACATTTGTC 58.263 43.478 0.00 0.00 0.00 3.18
3886 4227 4.406069 CACCATCTTAGCAACATTTGTCG 58.594 43.478 0.00 0.00 0.00 4.35
3887 4228 3.119849 ACCATCTTAGCAACATTTGTCGC 60.120 43.478 0.00 0.00 0.00 5.19
3888 4229 3.127548 CCATCTTAGCAACATTTGTCGCT 59.872 43.478 1.31 1.31 38.51 4.93
3889 4230 4.332543 CCATCTTAGCAACATTTGTCGCTA 59.667 41.667 0.00 0.00 35.93 4.26
3890 4231 4.921470 TCTTAGCAACATTTGTCGCTAC 57.079 40.909 2.92 0.00 36.73 3.58
3891 4232 4.566004 TCTTAGCAACATTTGTCGCTACT 58.434 39.130 2.92 0.00 36.73 2.57
3892 4233 4.625742 TCTTAGCAACATTTGTCGCTACTC 59.374 41.667 2.92 0.00 36.73 2.59
3893 4234 2.076863 AGCAACATTTGTCGCTACTCC 58.923 47.619 0.00 0.00 31.60 3.85
3894 4235 2.076863 GCAACATTTGTCGCTACTCCT 58.923 47.619 0.00 0.00 0.00 3.69
3895 4236 3.056107 AGCAACATTTGTCGCTACTCCTA 60.056 43.478 0.00 0.00 31.60 2.94
3896 4237 3.871594 GCAACATTTGTCGCTACTCCTAT 59.128 43.478 0.00 0.00 0.00 2.57
3897 4238 4.025647 GCAACATTTGTCGCTACTCCTATC 60.026 45.833 0.00 0.00 0.00 2.08
3898 4239 4.323553 ACATTTGTCGCTACTCCTATCC 57.676 45.455 0.00 0.00 0.00 2.59
3899 4240 3.704566 ACATTTGTCGCTACTCCTATCCA 59.295 43.478 0.00 0.00 0.00 3.41
3900 4241 3.795623 TTTGTCGCTACTCCTATCCAC 57.204 47.619 0.00 0.00 0.00 4.02
3901 4242 2.730934 TGTCGCTACTCCTATCCACT 57.269 50.000 0.00 0.00 0.00 4.00
3902 4243 3.014304 TGTCGCTACTCCTATCCACTT 57.986 47.619 0.00 0.00 0.00 3.16
3903 4244 2.688446 TGTCGCTACTCCTATCCACTTG 59.312 50.000 0.00 0.00 0.00 3.16
3904 4245 2.950309 GTCGCTACTCCTATCCACTTGA 59.050 50.000 0.00 0.00 0.00 3.02
3905 4246 3.570550 GTCGCTACTCCTATCCACTTGAT 59.429 47.826 0.00 0.00 37.49 2.57
3906 4247 3.570125 TCGCTACTCCTATCCACTTGATG 59.430 47.826 0.00 0.00 34.76 3.07
3907 4248 3.570125 CGCTACTCCTATCCACTTGATGA 59.430 47.826 0.00 0.00 34.76 2.92
3908 4249 4.038042 CGCTACTCCTATCCACTTGATGAA 59.962 45.833 0.00 0.00 34.76 2.57
3909 4250 5.537188 GCTACTCCTATCCACTTGATGAAG 58.463 45.833 0.00 0.00 34.76 3.02
3910 4251 5.510520 GCTACTCCTATCCACTTGATGAAGG 60.511 48.000 0.00 0.00 34.76 3.46
3911 4252 3.713764 ACTCCTATCCACTTGATGAAGGG 59.286 47.826 0.00 0.00 34.76 3.95
3915 4256 2.571548 CCACTTGATGAAGGGGTGC 58.428 57.895 4.81 0.00 46.61 5.01
3916 4257 0.967380 CCACTTGATGAAGGGGTGCC 60.967 60.000 4.81 0.00 46.61 5.01
3917 4258 1.002134 ACTTGATGAAGGGGTGCCG 60.002 57.895 0.00 0.00 32.95 5.69
3918 4259 1.299648 CTTGATGAAGGGGTGCCGA 59.700 57.895 0.00 0.00 0.00 5.54
3919 4260 0.107017 CTTGATGAAGGGGTGCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
3920 4261 1.140852 CTTGATGAAGGGGTGCCGATA 59.859 52.381 0.00 0.00 0.00 2.92
3921 4262 0.758734 TGATGAAGGGGTGCCGATAG 59.241 55.000 0.00 0.00 0.00 2.08
3922 4263 0.759346 GATGAAGGGGTGCCGATAGT 59.241 55.000 0.00 0.00 0.00 2.12
3923 4264 0.759346 ATGAAGGGGTGCCGATAGTC 59.241 55.000 0.00 0.00 0.00 2.59
3924 4265 1.335132 TGAAGGGGTGCCGATAGTCC 61.335 60.000 0.00 0.00 0.00 3.85
3925 4266 2.365095 GAAGGGGTGCCGATAGTCCG 62.365 65.000 0.00 0.00 0.00 4.79
3926 4267 2.836360 GGGGTGCCGATAGTCCGA 60.836 66.667 0.00 0.00 0.00 4.55
3927 4268 2.728817 GGGTGCCGATAGTCCGAG 59.271 66.667 0.00 0.00 0.00 4.63
3928 4269 2.027751 GGTGCCGATAGTCCGAGC 59.972 66.667 0.00 0.00 0.00 5.03
3929 4270 2.027751 GTGCCGATAGTCCGAGCC 59.972 66.667 0.00 0.00 0.00 4.70
3930 4271 2.123854 TGCCGATAGTCCGAGCCT 60.124 61.111 0.00 0.00 0.00 4.58
3931 4272 1.149854 TGCCGATAGTCCGAGCCTA 59.850 57.895 0.00 0.00 0.00 3.93
3932 4273 0.466739 TGCCGATAGTCCGAGCCTAA 60.467 55.000 0.00 0.00 0.00 2.69
3933 4274 0.889306 GCCGATAGTCCGAGCCTAAT 59.111 55.000 0.00 0.00 0.00 1.73
3934 4275 2.089980 GCCGATAGTCCGAGCCTAATA 58.910 52.381 0.00 0.00 0.00 0.98
3935 4276 2.159407 GCCGATAGTCCGAGCCTAATAC 60.159 54.545 0.00 0.00 0.00 1.89
3936 4277 2.422832 CCGATAGTCCGAGCCTAATACC 59.577 54.545 0.00 0.00 0.00 2.73
3937 4278 3.079578 CGATAGTCCGAGCCTAATACCA 58.920 50.000 0.00 0.00 0.00 3.25
3938 4279 3.504906 CGATAGTCCGAGCCTAATACCAA 59.495 47.826 0.00 0.00 0.00 3.67
3939 4280 4.022589 CGATAGTCCGAGCCTAATACCAAA 60.023 45.833 0.00 0.00 0.00 3.28
3940 4281 3.538634 AGTCCGAGCCTAATACCAAAC 57.461 47.619 0.00 0.00 0.00 2.93
3941 4282 2.835764 AGTCCGAGCCTAATACCAAACA 59.164 45.455 0.00 0.00 0.00 2.83
3942 4283 3.118738 AGTCCGAGCCTAATACCAAACAG 60.119 47.826 0.00 0.00 0.00 3.16
3943 4284 3.101437 TCCGAGCCTAATACCAAACAGA 58.899 45.455 0.00 0.00 0.00 3.41
3944 4285 3.118884 TCCGAGCCTAATACCAAACAGAC 60.119 47.826 0.00 0.00 0.00 3.51
3945 4286 3.369052 CCGAGCCTAATACCAAACAGACA 60.369 47.826 0.00 0.00 0.00 3.41
3946 4287 4.442706 CGAGCCTAATACCAAACAGACAT 58.557 43.478 0.00 0.00 0.00 3.06
3947 4288 4.508124 CGAGCCTAATACCAAACAGACATC 59.492 45.833 0.00 0.00 0.00 3.06
3948 4289 4.442706 AGCCTAATACCAAACAGACATCG 58.557 43.478 0.00 0.00 0.00 3.84
3949 4290 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
3950 4291 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
3951 4292 4.034048 CCTAATACCAAACAGACATCGCAC 59.966 45.833 0.00 0.00 0.00 5.34
3952 4293 2.535012 TACCAAACAGACATCGCACA 57.465 45.000 0.00 0.00 0.00 4.57
3953 4294 1.674359 ACCAAACAGACATCGCACAA 58.326 45.000 0.00 0.00 0.00 3.33
3954 4295 2.020720 ACCAAACAGACATCGCACAAA 58.979 42.857 0.00 0.00 0.00 2.83
3955 4296 2.622942 ACCAAACAGACATCGCACAAAT 59.377 40.909 0.00 0.00 0.00 2.32
3956 4297 2.981805 CCAAACAGACATCGCACAAATG 59.018 45.455 0.00 0.00 0.00 2.32
3971 4312 4.800471 GCACAAATGCCTAACATCTAAAGC 59.200 41.667 0.00 0.00 46.97 3.51
3972 4313 5.343249 CACAAATGCCTAACATCTAAAGCC 58.657 41.667 0.00 0.00 38.34 4.35
3973 4314 4.096382 ACAAATGCCTAACATCTAAAGCCG 59.904 41.667 0.00 0.00 38.34 5.52
3974 4315 2.325583 TGCCTAACATCTAAAGCCGG 57.674 50.000 0.00 0.00 0.00 6.13
3975 4316 1.834896 TGCCTAACATCTAAAGCCGGA 59.165 47.619 5.05 0.00 0.00 5.14
3976 4317 2.158957 TGCCTAACATCTAAAGCCGGAG 60.159 50.000 5.05 0.00 0.00 4.63
3977 4318 6.557480 ATGCCTAACATCTAAAGCCGGAGG 62.557 50.000 5.05 0.00 44.65 4.30
3998 4339 4.657824 CAACCGGTCCGACGCACT 62.658 66.667 14.39 0.00 0.00 4.40
3999 4340 4.353437 AACCGGTCCGACGCACTC 62.353 66.667 14.39 0.00 0.00 3.51
4001 4342 4.477975 CCGGTCCGACGCACTCTC 62.478 72.222 14.39 0.00 0.00 3.20
4002 4343 3.733960 CGGTCCGACGCACTCTCA 61.734 66.667 4.91 0.00 0.00 3.27
4003 4344 2.885861 GGTCCGACGCACTCTCAT 59.114 61.111 0.00 0.00 0.00 2.90
4004 4345 1.517257 GGTCCGACGCACTCTCATG 60.517 63.158 0.00 0.00 0.00 3.07
4005 4346 1.213013 GTCCGACGCACTCTCATGT 59.787 57.895 0.00 0.00 0.00 3.21
4006 4347 1.073216 GTCCGACGCACTCTCATGTG 61.073 60.000 0.00 0.00 40.62 3.21
4007 4348 1.080501 CCGACGCACTCTCATGTGT 60.081 57.895 0.00 0.00 45.84 3.72
4009 4350 2.353807 GACGCACTCTCATGTGTCG 58.646 57.895 3.92 0.00 46.77 4.35
4010 4351 0.387367 GACGCACTCTCATGTGTCGT 60.387 55.000 13.43 13.43 46.77 4.34
4011 4352 0.387367 ACGCACTCTCATGTGTCGTC 60.387 55.000 9.77 0.00 42.25 4.20
4012 4353 1.398762 CGCACTCTCATGTGTCGTCG 61.399 60.000 0.00 0.00 39.89 5.12
4013 4354 1.678269 GCACTCTCATGTGTCGTCGC 61.678 60.000 0.00 0.00 39.89 5.19
4014 4355 1.073216 CACTCTCATGTGTCGTCGCC 61.073 60.000 0.00 0.00 33.61 5.54
4015 4356 1.869574 CTCTCATGTGTCGTCGCCG 60.870 63.158 0.00 0.00 0.00 6.46
4016 4357 3.545481 CTCATGTGTCGTCGCCGC 61.545 66.667 0.00 0.00 0.00 6.53
4019 4360 4.451150 ATGTGTCGTCGCCGCCAT 62.451 61.111 0.00 0.00 0.00 4.40
4021 4362 4.796231 GTGTCGTCGCCGCCATCT 62.796 66.667 0.00 0.00 0.00 2.90
4022 4363 4.063967 TGTCGTCGCCGCCATCTT 62.064 61.111 0.00 0.00 0.00 2.40
4023 4364 3.255379 GTCGTCGCCGCCATCTTC 61.255 66.667 0.00 0.00 0.00 2.87
4024 4365 4.508128 TCGTCGCCGCCATCTTCC 62.508 66.667 0.00 0.00 0.00 3.46
4025 4366 4.812476 CGTCGCCGCCATCTTCCA 62.812 66.667 0.00 0.00 0.00 3.53
4026 4367 3.195698 GTCGCCGCCATCTTCCAC 61.196 66.667 0.00 0.00 0.00 4.02
4027 4368 4.467084 TCGCCGCCATCTTCCACC 62.467 66.667 0.00 0.00 0.00 4.61
4028 4369 4.776322 CGCCGCCATCTTCCACCA 62.776 66.667 0.00 0.00 0.00 4.17
4029 4370 2.361104 GCCGCCATCTTCCACCAA 60.361 61.111 0.00 0.00 0.00 3.67
4030 4371 1.754234 GCCGCCATCTTCCACCAAT 60.754 57.895 0.00 0.00 0.00 3.16
4031 4372 1.728490 GCCGCCATCTTCCACCAATC 61.728 60.000 0.00 0.00 0.00 2.67
4032 4373 1.103398 CCGCCATCTTCCACCAATCC 61.103 60.000 0.00 0.00 0.00 3.01
4033 4374 0.394216 CGCCATCTTCCACCAATCCA 60.394 55.000 0.00 0.00 0.00 3.41
4034 4375 1.751733 CGCCATCTTCCACCAATCCAT 60.752 52.381 0.00 0.00 0.00 3.41
4035 4376 1.959282 GCCATCTTCCACCAATCCATC 59.041 52.381 0.00 0.00 0.00 3.51
4036 4377 2.423947 GCCATCTTCCACCAATCCATCT 60.424 50.000 0.00 0.00 0.00 2.90
4037 4378 3.907221 CCATCTTCCACCAATCCATCTT 58.093 45.455 0.00 0.00 0.00 2.40
4038 4379 3.887716 CCATCTTCCACCAATCCATCTTC 59.112 47.826 0.00 0.00 0.00 2.87
4039 4380 4.529897 CATCTTCCACCAATCCATCTTCA 58.470 43.478 0.00 0.00 0.00 3.02
4040 4381 4.226427 TCTTCCACCAATCCATCTTCAG 57.774 45.455 0.00 0.00 0.00 3.02
4041 4382 3.845992 TCTTCCACCAATCCATCTTCAGA 59.154 43.478 0.00 0.00 0.00 3.27
4042 4383 3.920231 TCCACCAATCCATCTTCAGAG 57.080 47.619 0.00 0.00 0.00 3.35
4043 4384 2.092753 TCCACCAATCCATCTTCAGAGC 60.093 50.000 0.00 0.00 0.00 4.09
4044 4385 2.356432 CCACCAATCCATCTTCAGAGCA 60.356 50.000 0.00 0.00 0.00 4.26
4045 4386 2.943690 CACCAATCCATCTTCAGAGCAG 59.056 50.000 0.00 0.00 0.00 4.24
4046 4387 2.842496 ACCAATCCATCTTCAGAGCAGA 59.158 45.455 0.00 0.00 0.00 4.26
4047 4388 3.265221 ACCAATCCATCTTCAGAGCAGAA 59.735 43.478 0.00 0.00 0.00 3.02
4048 4389 4.263639 ACCAATCCATCTTCAGAGCAGAAA 60.264 41.667 0.00 0.00 0.00 2.52
4049 4390 4.096081 CCAATCCATCTTCAGAGCAGAAAC 59.904 45.833 0.00 0.00 0.00 2.78
4050 4391 4.840716 ATCCATCTTCAGAGCAGAAACT 57.159 40.909 0.00 0.00 0.00 2.66
4051 4392 5.946942 ATCCATCTTCAGAGCAGAAACTA 57.053 39.130 0.00 0.00 0.00 2.24
4052 4393 5.745312 TCCATCTTCAGAGCAGAAACTAA 57.255 39.130 0.00 0.00 0.00 2.24
4053 4394 5.482908 TCCATCTTCAGAGCAGAAACTAAC 58.517 41.667 0.00 0.00 0.00 2.34
4054 4395 4.328440 CCATCTTCAGAGCAGAAACTAACG 59.672 45.833 0.00 0.00 0.00 3.18
4055 4396 3.318017 TCTTCAGAGCAGAAACTAACGC 58.682 45.455 0.00 0.00 0.00 4.84
4056 4397 2.812358 TCAGAGCAGAAACTAACGCA 57.188 45.000 0.00 0.00 0.00 5.24
4057 4398 2.404215 TCAGAGCAGAAACTAACGCAC 58.596 47.619 0.00 0.00 0.00 5.34
4058 4399 1.461127 CAGAGCAGAAACTAACGCACC 59.539 52.381 0.00 0.00 0.00 5.01
4059 4400 1.070134 AGAGCAGAAACTAACGCACCA 59.930 47.619 0.00 0.00 0.00 4.17
4060 4401 1.871039 GAGCAGAAACTAACGCACCAA 59.129 47.619 0.00 0.00 0.00 3.67
4061 4402 2.484264 GAGCAGAAACTAACGCACCAAT 59.516 45.455 0.00 0.00 0.00 3.16
4062 4403 2.484264 AGCAGAAACTAACGCACCAATC 59.516 45.455 0.00 0.00 0.00 2.67
4063 4404 2.724839 GCAGAAACTAACGCACCAATCG 60.725 50.000 0.00 0.00 0.00 3.34
4064 4405 2.478894 CAGAAACTAACGCACCAATCGT 59.521 45.455 0.00 0.00 42.54 3.73
4065 4406 3.676172 CAGAAACTAACGCACCAATCGTA 59.324 43.478 0.00 0.00 39.48 3.43
4066 4407 4.150980 CAGAAACTAACGCACCAATCGTAA 59.849 41.667 0.00 0.00 39.48 3.18
4067 4408 4.151157 AGAAACTAACGCACCAATCGTAAC 59.849 41.667 0.00 0.00 39.48 2.50
4068 4409 3.029320 ACTAACGCACCAATCGTAACA 57.971 42.857 0.00 0.00 39.48 2.41
4069 4410 3.592059 ACTAACGCACCAATCGTAACAT 58.408 40.909 0.00 0.00 39.48 2.71
4070 4411 3.998341 ACTAACGCACCAATCGTAACATT 59.002 39.130 0.00 0.00 39.48 2.71
4071 4412 5.170021 ACTAACGCACCAATCGTAACATTA 58.830 37.500 0.00 0.00 39.48 1.90
4072 4413 4.330740 AACGCACCAATCGTAACATTAC 57.669 40.909 0.00 0.00 39.48 1.89
4073 4414 2.674357 ACGCACCAATCGTAACATTACC 59.326 45.455 0.00 0.00 38.52 2.85
4074 4415 2.933906 CGCACCAATCGTAACATTACCT 59.066 45.455 0.00 0.00 0.00 3.08
4132 4473 8.247562 TCACAGTTTATTGGAATAAAATTCCGG 58.752 33.333 12.73 0.00 41.14 5.14
4166 4507 7.819900 ACTAAACTAAGCTTCAGTTAGGACATG 59.180 37.037 19.28 0.00 35.19 3.21
4172 4513 5.749462 AGCTTCAGTTAGGACATGCTAAAT 58.251 37.500 0.00 0.00 0.00 1.40
4175 4516 6.969473 GCTTCAGTTAGGACATGCTAAATTTC 59.031 38.462 0.00 0.00 0.00 2.17
4197 4538 8.758633 TTTCGGTTATCTTGTTTTGTTTTGAA 57.241 26.923 0.00 0.00 0.00 2.69
4201 4542 7.398746 GGTTATCTTGTTTTGTTTTGAACAGC 58.601 34.615 0.00 0.00 43.27 4.40
4245 4601 7.327032 GCCTCTTATGTGACTTGCTTTAAAAAG 59.673 37.037 0.00 0.00 39.03 2.27
4262 4618 2.999185 AAGAAAGGATTCCCTGGCAA 57.001 45.000 0.00 0.00 43.48 4.52
4270 4626 3.149981 GGATTCCCTGGCAAATAGCTAC 58.850 50.000 0.00 0.00 44.79 3.58
4271 4627 3.435026 GGATTCCCTGGCAAATAGCTACA 60.435 47.826 0.00 0.00 44.79 2.74
4272 4628 3.951563 TTCCCTGGCAAATAGCTACAT 57.048 42.857 0.00 0.00 44.79 2.29
4273 4629 5.514834 GGATTCCCTGGCAAATAGCTACATA 60.515 44.000 0.00 0.00 44.79 2.29
4328 4684 3.669251 TTTTGGGCGGGATTTGTAAAG 57.331 42.857 0.00 0.00 0.00 1.85
4329 4685 2.588464 TTGGGCGGGATTTGTAAAGA 57.412 45.000 0.00 0.00 0.00 2.52
4347 4703 9.877178 TTGTAAAGAATTCTTGATCTCCTACTC 57.123 33.333 21.15 0.00 36.12 2.59
4363 4719 8.402798 TCTCCTACTCTATTGCAAGATAAGAG 57.597 38.462 20.62 20.62 0.00 2.85
4466 4822 5.065731 CAGGAAGCAATTTCACTCCATACTC 59.934 44.000 0.00 0.00 37.54 2.59
4535 4891 2.234908 CTCCTCCAAGGTTACACTGGAG 59.765 54.545 19.17 19.17 44.13 3.86
4642 4998 2.678336 GGTTACTCAAATGGCTTCCTCG 59.322 50.000 0.00 0.00 0.00 4.63
4649 5005 2.298729 CAAATGGCTTCCTCGGGAAAAA 59.701 45.455 6.79 0.00 41.54 1.94
4787 5143 0.464373 TGGATGCGATGGAGGCTTTC 60.464 55.000 0.00 0.00 0.00 2.62
4806 5162 4.335082 TTCGCTGTTAATGTGCACATAC 57.665 40.909 31.55 25.64 35.10 2.39
4826 5182 0.738975 TATGGGAGCGACAAGACGAG 59.261 55.000 0.00 0.00 35.09 4.18
4853 5209 3.329386 TCAGCAGAAGATGAAAACCGAG 58.671 45.455 0.00 0.00 37.20 4.63
4857 5213 5.006165 CAGCAGAAGATGAAAACCGAGTATC 59.994 44.000 0.00 0.00 31.30 2.24
5009 5365 0.604073 TGGATGCATTGCACACAAGG 59.396 50.000 14.66 0.00 43.04 3.61
5153 5509 7.227156 AGACACTGAAAGGTTATGAGAATGTT 58.773 34.615 0.00 0.00 39.30 2.71
5162 5518 5.491078 AGGTTATGAGAATGTTAGGGTTCCA 59.509 40.000 0.00 0.00 0.00 3.53
5557 5917 0.744874 TATGCGCTGGTCTCCACTAC 59.255 55.000 9.73 0.00 0.00 2.73
5558 5918 0.972983 ATGCGCTGGTCTCCACTACT 60.973 55.000 9.73 0.00 0.00 2.57
5679 6044 4.697828 GTCTCCTTAGAGCAAAAAGAAGGG 59.302 45.833 0.00 0.00 40.22 3.95
5680 6045 4.597507 TCTCCTTAGAGCAAAAAGAAGGGA 59.402 41.667 0.00 0.00 40.22 4.20
5681 6046 5.251700 TCTCCTTAGAGCAAAAAGAAGGGAT 59.748 40.000 0.00 0.00 40.22 3.85
5682 6047 5.892348 TCCTTAGAGCAAAAAGAAGGGATT 58.108 37.500 0.00 0.00 37.78 3.01
5683 6048 5.711976 TCCTTAGAGCAAAAAGAAGGGATTG 59.288 40.000 0.00 0.00 37.78 2.67
5695 6060 3.854994 AGAAGGGATTGTTGAGGGAGAAT 59.145 43.478 0.00 0.00 0.00 2.40
5800 6165 6.538742 TCCAAGAGGCTCAGAAAATATTTACG 59.461 38.462 18.26 0.00 33.74 3.18
5805 6170 7.390718 AGAGGCTCAGAAAATATTTACGTGTTT 59.609 33.333 18.26 0.00 0.00 2.83
5890 6255 9.685828 TTTATTGCCAGTAGAAAAATGTACAAC 57.314 29.630 0.00 0.00 0.00 3.32
5939 6304 8.386606 TGTATTCAAAAAGTGTTCAAAACATGC 58.613 29.630 0.00 0.00 44.35 4.06
5944 6309 8.939929 TCAAAAAGTGTTCAAAACATGCATTTA 58.060 25.926 0.00 0.00 44.35 1.40
5945 6310 9.552114 CAAAAAGTGTTCAAAACATGCATTTAA 57.448 25.926 0.00 0.00 44.35 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.846405 AACCCCTCCCTCGCTCACA 62.846 63.158 0.00 0.00 0.00 3.58
34 35 3.003763 AACCCCTCCCTCGCTCAC 61.004 66.667 0.00 0.00 0.00 3.51
35 36 2.683933 GAACCCCTCCCTCGCTCA 60.684 66.667 0.00 0.00 0.00 4.26
36 37 2.683933 TGAACCCCTCCCTCGCTC 60.684 66.667 0.00 0.00 0.00 5.03
37 38 2.685380 CTGAACCCCTCCCTCGCT 60.685 66.667 0.00 0.00 0.00 4.93
38 39 2.523453 GAACTGAACCCCTCCCTCGC 62.523 65.000 0.00 0.00 0.00 5.03
39 40 1.192146 TGAACTGAACCCCTCCCTCG 61.192 60.000 0.00 0.00 0.00 4.63
40 41 0.615850 CTGAACTGAACCCCTCCCTC 59.384 60.000 0.00 0.00 0.00 4.30
41 42 0.104409 ACTGAACTGAACCCCTCCCT 60.104 55.000 0.00 0.00 0.00 4.20
42 43 0.036875 CACTGAACTGAACCCCTCCC 59.963 60.000 0.00 0.00 0.00 4.30
43 44 0.036875 CCACTGAACTGAACCCCTCC 59.963 60.000 0.00 0.00 0.00 4.30
44 45 0.036875 CCCACTGAACTGAACCCCTC 59.963 60.000 0.00 0.00 0.00 4.30
63 64 5.338365 GCATTGATGGTCAAAGATTCTGTC 58.662 41.667 0.00 0.00 40.12 3.51
64 65 4.159135 GGCATTGATGGTCAAAGATTCTGT 59.841 41.667 0.00 0.00 40.12 3.41
122 123 9.502091 TTGCTCAATTAAGTGAAATACAGTACT 57.498 29.630 7.08 0.00 0.00 2.73
123 124 9.760660 CTTGCTCAATTAAGTGAAATACAGTAC 57.239 33.333 7.08 0.00 0.00 2.73
170 174 2.187599 CTGCTGTACGGTGCTTTGGC 62.188 60.000 3.10 0.00 39.26 4.52
204 208 3.105937 GCCGAAAGATTTTACCGCAATC 58.894 45.455 0.00 0.00 0.00 2.67
207 211 0.444651 CGCCGAAAGATTTTACCGCA 59.555 50.000 0.00 0.00 0.00 5.69
209 213 2.864343 AGATCGCCGAAAGATTTTACCG 59.136 45.455 0.00 0.00 0.00 4.02
331 349 1.544825 TTTACTCGCTCTGCAGCCCT 61.545 55.000 9.47 0.00 43.56 5.19
412 437 2.229784 CACGAGGTAGGTAAGTTTCGGT 59.770 50.000 0.00 0.00 32.77 4.69
414 439 3.496155 GACACGAGGTAGGTAAGTTTCG 58.504 50.000 0.00 0.00 0.00 3.46
500 556 4.176752 GGAGAAGGGCCGGCGATT 62.177 66.667 22.54 17.81 0.00 3.34
527 587 2.124653 GGGTCGGCGAGAGAGAGA 60.125 66.667 11.20 0.00 0.00 3.10
531 591 1.077285 TGTATGGGTCGGCGAGAGA 60.077 57.895 11.20 0.00 0.00 3.10
532 592 1.065928 GTGTATGGGTCGGCGAGAG 59.934 63.158 11.20 0.00 0.00 3.20
533 593 1.663379 CTGTGTATGGGTCGGCGAGA 61.663 60.000 11.20 0.00 0.00 4.04
534 594 1.226974 CTGTGTATGGGTCGGCGAG 60.227 63.158 11.20 0.00 0.00 5.03
535 595 2.717044 CCTGTGTATGGGTCGGCGA 61.717 63.158 4.99 4.99 0.00 5.54
536 596 2.202878 CCTGTGTATGGGTCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
537 597 2.513897 GCCTGTGTATGGGTCGGC 60.514 66.667 0.00 0.00 0.00 5.54
538 598 2.028125 ATCGCCTGTGTATGGGTCGG 62.028 60.000 0.00 0.00 0.00 4.79
539 599 0.597637 GATCGCCTGTGTATGGGTCG 60.598 60.000 0.00 0.00 0.00 4.79
540 600 0.597637 CGATCGCCTGTGTATGGGTC 60.598 60.000 0.26 0.00 0.00 4.46
541 601 1.441729 CGATCGCCTGTGTATGGGT 59.558 57.895 0.26 0.00 0.00 4.51
542 602 1.300931 CCGATCGCCTGTGTATGGG 60.301 63.158 10.32 0.00 0.00 4.00
543 603 0.318441 ATCCGATCGCCTGTGTATGG 59.682 55.000 10.32 0.00 0.00 2.74
544 604 1.702886 GATCCGATCGCCTGTGTATG 58.297 55.000 10.32 0.00 0.00 2.39
545 605 0.241213 CGATCCGATCGCCTGTGTAT 59.759 55.000 17.37 0.00 46.55 2.29
546 606 1.652563 CGATCCGATCGCCTGTGTA 59.347 57.895 17.37 0.00 46.55 2.90
547 607 2.413351 CGATCCGATCGCCTGTGT 59.587 61.111 17.37 0.00 46.55 3.72
555 615 1.611977 TGTGTATGGGTCGATCCGATC 59.388 52.381 10.84 3.07 38.42 3.69
556 616 1.613925 CTGTGTATGGGTCGATCCGAT 59.386 52.381 10.84 7.51 38.42 4.18
557 617 1.029681 CTGTGTATGGGTCGATCCGA 58.970 55.000 10.84 0.00 37.00 4.55
558 618 0.032130 CCTGTGTATGGGTCGATCCG 59.968 60.000 10.84 0.00 37.00 4.18
559 619 0.249911 GCCTGTGTATGGGTCGATCC 60.250 60.000 8.12 8.12 0.00 3.36
560 620 0.597637 CGCCTGTGTATGGGTCGATC 60.598 60.000 0.00 0.00 0.00 3.69
561 621 1.040893 TCGCCTGTGTATGGGTCGAT 61.041 55.000 0.00 0.00 0.00 3.59
562 622 1.679641 TCGCCTGTGTATGGGTCGA 60.680 57.895 0.00 0.00 0.00 4.20
684 745 0.886490 ACAGCAGGGTGAGCGAAAAG 60.886 55.000 5.37 0.00 37.01 2.27
921 1003 4.741781 CAAACAAGCGCGCGGGAG 62.742 66.667 33.06 18.63 0.00 4.30
941 1045 2.726691 CGACGCCGCCAAGTTAGTG 61.727 63.158 0.00 0.00 0.00 2.74
942 1046 2.431942 CGACGCCGCCAAGTTAGT 60.432 61.111 0.00 0.00 0.00 2.24
943 1047 3.186047 CCGACGCCGCCAAGTTAG 61.186 66.667 0.00 0.00 0.00 2.34
944 1048 4.745751 CCCGACGCCGCCAAGTTA 62.746 66.667 0.00 0.00 0.00 2.24
1128 1242 4.587189 GGGAGCGCGCGGAAGTAT 62.587 66.667 33.06 5.81 0.00 2.12
1296 1410 0.401395 AGTGGAAGTGGAGGTGGGAA 60.401 55.000 0.00 0.00 0.00 3.97
1430 1544 2.036256 GCTGTTGGGGCACTCCAT 59.964 61.111 0.00 0.00 36.58 3.41
1443 1557 1.593787 CTCTGGGATGTGACGCTGT 59.406 57.895 0.00 0.00 0.00 4.40
1611 1725 2.925653 TGGGATTGGGAATGAAGAAGGA 59.074 45.455 0.00 0.00 0.00 3.36
1620 1734 1.408822 GCGACTTCTGGGATTGGGAAT 60.409 52.381 0.00 0.00 0.00 3.01
1635 1749 1.754234 GGCATTGGGGATTGCGACT 60.754 57.895 0.00 0.00 39.78 4.18
1926 2043 3.915437 AACGCCTTTTGATTGTAGTGG 57.085 42.857 0.00 0.00 0.00 4.00
1943 2060 4.675029 ACCCGTCCGGAGCAAACG 62.675 66.667 3.06 4.71 37.50 3.60
1968 2085 2.045536 CTGGAGTTGGGGCTGCTC 60.046 66.667 0.00 0.00 0.00 4.26
2068 2185 4.475135 GCTCTCCACCGCCTTCCC 62.475 72.222 0.00 0.00 0.00 3.97
2211 2328 4.309933 CATTGTCAGAGTCACAGCTACAA 58.690 43.478 0.00 0.00 0.00 2.41
2225 2342 1.134367 CTCCAGCATTGGCATTGTCAG 59.866 52.381 10.72 2.14 44.63 3.51
2261 2378 4.240103 CCGGATCATCGCCAGCCA 62.240 66.667 0.00 0.00 0.00 4.75
2301 2418 0.179936 CCATGGAAGAGTGCTCCTCC 59.820 60.000 5.56 9.35 41.47 4.30
2494 2685 5.997746 TCAACTGAAAAGAGAAGTGGGTATG 59.002 40.000 0.00 0.00 0.00 2.39
2514 2705 7.043854 GCAATTGAGCATGTATGTACAATCAAC 60.044 37.037 10.34 0.00 38.66 3.18
2597 2788 1.585668 CATTAGTGACTCGAGCTTGCG 59.414 52.381 13.61 0.00 0.00 4.85
2731 3065 7.414208 GCCAAGTTAGCTAACCTATCAAGAAAC 60.414 40.741 28.79 6.06 36.88 2.78
2738 3072 4.417426 TGGCCAAGTTAGCTAACCTATC 57.583 45.455 28.79 17.18 36.88 2.08
2857 3191 0.391661 TTCTGAGTTCCGCTGGATGC 60.392 55.000 0.00 0.00 38.57 3.91
2866 3200 9.833182 GATTCTTTTACTTGAATTCTGAGTTCC 57.167 33.333 16.56 0.00 33.60 3.62
2964 3298 2.996631 ACCATGATCTCCTTGTGAAGC 58.003 47.619 0.00 0.00 0.00 3.86
2993 3327 9.729281 AATAAAGACACCCTTCTTATAACGAAA 57.271 29.630 0.00 0.00 34.60 3.46
2997 3331 9.110502 CCAGAATAAAGACACCCTTCTTATAAC 57.889 37.037 0.00 0.00 34.60 1.89
3004 3338 5.070685 ACAACCAGAATAAAGACACCCTTC 58.929 41.667 0.00 0.00 33.02 3.46
3008 3342 7.681939 TTATGACAACCAGAATAAAGACACC 57.318 36.000 0.00 0.00 0.00 4.16
3012 3346 6.765989 CGGGATTATGACAACCAGAATAAAGA 59.234 38.462 0.00 0.00 36.87 2.52
3021 3355 6.181206 TCATTATCGGGATTATGACAACCA 57.819 37.500 6.32 0.00 33.49 3.67
3022 3356 6.878923 TGATCATTATCGGGATTATGACAACC 59.121 38.462 11.30 4.41 38.95 3.77
3024 3358 8.156820 AGTTGATCATTATCGGGATTATGACAA 58.843 33.333 11.30 13.17 38.95 3.18
3031 3365 6.268617 TCTGAGAGTTGATCATTATCGGGATT 59.731 38.462 0.00 0.00 34.60 3.01
3034 3368 5.459536 TCTGAGAGTTGATCATTATCGGG 57.540 43.478 0.00 0.00 34.60 5.14
3073 3407 5.423015 ACAATACATCGAGTTTGAGAGCAT 58.577 37.500 0.00 0.00 0.00 3.79
3089 3423 6.038825 ACGTTTGACAGATGGAAAACAATACA 59.961 34.615 11.02 0.00 33.16 2.29
3093 3427 4.974368 ACGTTTGACAGATGGAAAACAA 57.026 36.364 11.02 0.00 33.16 2.83
3095 3429 6.687105 GCATATACGTTTGACAGATGGAAAAC 59.313 38.462 0.00 3.74 0.00 2.43
3098 3432 5.670485 AGCATATACGTTTGACAGATGGAA 58.330 37.500 0.00 0.00 0.00 3.53
3140 3474 6.672147 AGAGCCAATTTTATGCAATATCGAC 58.328 36.000 0.00 0.00 0.00 4.20
3143 3477 8.922676 CAATGAGAGCCAATTTTATGCAATATC 58.077 33.333 0.00 0.00 0.00 1.63
3144 3478 7.876068 CCAATGAGAGCCAATTTTATGCAATAT 59.124 33.333 0.00 0.00 0.00 1.28
3145 3479 7.147689 ACCAATGAGAGCCAATTTTATGCAATA 60.148 33.333 0.00 0.00 0.00 1.90
3146 3480 6.053005 CCAATGAGAGCCAATTTTATGCAAT 58.947 36.000 0.00 0.00 0.00 3.56
3147 3481 5.046448 ACCAATGAGAGCCAATTTTATGCAA 60.046 36.000 0.00 0.00 0.00 4.08
3152 3486 7.531857 TTAACACCAATGAGAGCCAATTTTA 57.468 32.000 0.00 0.00 0.00 1.52
3188 3523 2.230025 CGCCACACTCCATAGATAGAGG 59.770 54.545 0.00 0.00 34.27 3.69
3200 3535 1.128692 GTAAAGCATCACGCCACACTC 59.871 52.381 0.00 0.00 44.04 3.51
3205 3540 2.556189 ACAAATGTAAAGCATCACGCCA 59.444 40.909 0.00 0.00 44.04 5.69
3206 3541 3.171277 GACAAATGTAAAGCATCACGCC 58.829 45.455 0.00 0.00 44.04 5.68
3207 3542 3.820689 TGACAAATGTAAAGCATCACGC 58.179 40.909 0.00 0.00 36.67 5.34
3209 3544 4.563976 GGCATGACAAATGTAAAGCATCAC 59.436 41.667 0.00 0.00 36.67 3.06
3210 3545 4.220163 TGGCATGACAAATGTAAAGCATCA 59.780 37.500 0.00 0.00 36.67 3.07
3211 3546 4.746729 TGGCATGACAAATGTAAAGCATC 58.253 39.130 0.00 0.00 36.67 3.91
3212 3547 4.804868 TGGCATGACAAATGTAAAGCAT 57.195 36.364 0.00 0.00 40.03 3.79
3213 3548 4.804868 ATGGCATGACAAATGTAAAGCA 57.195 36.364 4.70 0.00 0.00 3.91
3219 3554 7.982761 ATAAAAACAATGGCATGACAAATGT 57.017 28.000 15.58 15.58 0.00 2.71
3225 3560 6.818142 AGGCTTAATAAAAACAATGGCATGAC 59.182 34.615 0.00 0.00 0.00 3.06
3266 3601 9.627123 TTCTCTTCTTCCTAACAAAATTCAAGA 57.373 29.630 0.00 0.00 0.00 3.02
3284 3619 9.206690 TCATATGTAATCCTCAACTTCTCTTCT 57.793 33.333 1.90 0.00 0.00 2.85
3290 3625 9.383519 TCTTTGTCATATGTAATCCTCAACTTC 57.616 33.333 1.90 0.00 0.00 3.01
3329 3664 4.557496 GCACCACTTTCATCCAACTCTTTC 60.557 45.833 0.00 0.00 0.00 2.62
3344 3679 1.191535 TATACGGCTCTGCACCACTT 58.808 50.000 0.00 0.00 0.00 3.16
3356 3691 5.977129 CCTTGTGGAATCAATTTTATACGGC 59.023 40.000 0.00 0.00 34.57 5.68
3378 3713 1.972588 AGTGTCCTTATTGAGGCCCT 58.027 50.000 0.00 0.00 45.87 5.19
3398 3733 4.406648 TGCGATATTGATTCTGGTGAGT 57.593 40.909 0.00 0.00 0.00 3.41
3416 3751 4.871993 AACTTTAGCTGATCTGATTGCG 57.128 40.909 3.42 0.00 0.00 4.85
3422 3757 9.474920 CTCCTAGAAATAACTTTAGCTGATCTG 57.525 37.037 0.00 0.00 0.00 2.90
3431 3766 8.618240 TGTGGATCCTCCTAGAAATAACTTTA 57.382 34.615 14.23 0.00 37.46 1.85
3449 3784 3.013276 TCATCGCGTAGAATGTGGATC 57.987 47.619 5.77 0.00 0.00 3.36
3458 3793 2.218603 TGTAGCTCATCATCGCGTAGA 58.781 47.619 5.77 5.78 0.00 2.59
3524 3859 8.637986 AGATCAACTCAATAGGATAGAAGTGTC 58.362 37.037 0.00 0.00 0.00 3.67
3527 3862 8.774546 TCAGATCAACTCAATAGGATAGAAGT 57.225 34.615 0.00 0.00 0.00 3.01
3531 3866 7.877097 CCCTTTCAGATCAACTCAATAGGATAG 59.123 40.741 0.00 0.00 0.00 2.08
3577 3913 9.857656 ATCATCCTAACAATTTCACAGACATAT 57.142 29.630 0.00 0.00 0.00 1.78
3581 3917 8.778358 GGATATCATCCTAACAATTTCACAGAC 58.222 37.037 4.83 0.00 46.19 3.51
3636 3976 7.812648 AGCGTATTTAAACAAAGTCAGCAATA 58.187 30.769 0.00 0.00 0.00 1.90
3641 3981 6.236017 TGGAGCGTATTTAAACAAAGTCAG 57.764 37.500 0.00 0.00 0.00 3.51
3644 3984 6.861055 CACATTGGAGCGTATTTAAACAAAGT 59.139 34.615 0.00 0.00 0.00 2.66
3646 3986 6.740110 ACACATTGGAGCGTATTTAAACAAA 58.260 32.000 0.00 0.00 0.00 2.83
3656 3996 4.570930 TGTTATCAACACATTGGAGCGTA 58.429 39.130 0.00 0.00 36.25 4.42
3657 3997 3.407698 TGTTATCAACACATTGGAGCGT 58.592 40.909 0.00 0.00 36.25 5.07
3658 3998 4.142622 ACATGTTATCAACACATTGGAGCG 60.143 41.667 0.00 0.00 45.50 5.03
3662 4003 6.499234 TGAGACATGTTATCAACACATTGG 57.501 37.500 11.16 0.00 45.50 3.16
3700 4041 4.753233 AGAACTATTGCAGCACTCAGTAG 58.247 43.478 0.00 0.00 32.24 2.57
3701 4042 4.808414 AGAACTATTGCAGCACTCAGTA 57.192 40.909 0.00 0.00 0.00 2.74
3737 4078 6.018994 GGTAATGTTACGATGGTTCTCATGAC 60.019 42.308 0.00 0.00 35.97 3.06
3766 4107 6.434965 CGGGGGTAATTCTCCTTTTCTAAAAA 59.565 38.462 0.00 0.00 36.78 1.94
3767 4108 5.947566 CGGGGGTAATTCTCCTTTTCTAAAA 59.052 40.000 0.00 0.00 36.78 1.52
3768 4109 5.503002 CGGGGGTAATTCTCCTTTTCTAAA 58.497 41.667 0.00 0.00 36.78 1.85
3769 4110 4.080186 CCGGGGGTAATTCTCCTTTTCTAA 60.080 45.833 0.00 0.00 36.78 2.10
3770 4111 3.457012 CCGGGGGTAATTCTCCTTTTCTA 59.543 47.826 0.00 0.00 36.78 2.10
3771 4112 2.241430 CCGGGGGTAATTCTCCTTTTCT 59.759 50.000 0.00 0.00 36.78 2.52
3772 4113 2.651455 CCGGGGGTAATTCTCCTTTTC 58.349 52.381 0.00 0.00 36.78 2.29
3773 4114 1.341679 GCCGGGGGTAATTCTCCTTTT 60.342 52.381 2.18 0.00 36.78 2.27
3774 4115 0.257905 GCCGGGGGTAATTCTCCTTT 59.742 55.000 2.18 0.00 36.78 3.11
3775 4116 1.642513 GGCCGGGGGTAATTCTCCTT 61.643 60.000 2.18 0.00 36.78 3.36
3776 4117 2.076803 GGCCGGGGGTAATTCTCCT 61.077 63.158 2.18 0.00 36.78 3.69
3777 4118 2.053259 GAGGCCGGGGGTAATTCTCC 62.053 65.000 2.18 0.00 35.52 3.71
3778 4119 1.054978 AGAGGCCGGGGGTAATTCTC 61.055 60.000 2.18 0.00 0.00 2.87
3779 4120 1.004361 AGAGGCCGGGGGTAATTCT 59.996 57.895 2.18 0.00 0.00 2.40
3780 4121 1.148498 CAGAGGCCGGGGGTAATTC 59.852 63.158 2.18 0.00 0.00 2.17
3781 4122 3.056754 GCAGAGGCCGGGGGTAATT 62.057 63.158 2.18 0.00 0.00 1.40
3782 4123 3.489513 GCAGAGGCCGGGGGTAAT 61.490 66.667 2.18 0.00 0.00 1.89
3784 4125 2.900269 TAATGCAGAGGCCGGGGGTA 62.900 60.000 2.18 0.00 40.13 3.69
3786 4127 3.482232 CTAATGCAGAGGCCGGGGG 62.482 68.421 2.18 0.00 40.13 5.40
3787 4128 2.111878 CTAATGCAGAGGCCGGGG 59.888 66.667 2.18 0.00 40.13 5.73
3788 4129 2.111878 CCTAATGCAGAGGCCGGG 59.888 66.667 2.18 0.00 40.13 5.73
3793 4134 5.796424 AATAAAATGGCCTAATGCAGAGG 57.204 39.130 12.24 12.24 43.89 3.69
3818 4159 9.841295 ACTACTTTGTAAGGTCTTTGTGAATAA 57.159 29.630 0.00 0.00 0.00 1.40
3820 4161 9.269453 GTACTACTTTGTAAGGTCTTTGTGAAT 57.731 33.333 0.00 0.00 0.00 2.57
3821 4162 8.259411 TGTACTACTTTGTAAGGTCTTTGTGAA 58.741 33.333 0.00 0.00 0.00 3.18
3822 4163 7.784037 TGTACTACTTTGTAAGGTCTTTGTGA 58.216 34.615 0.00 0.00 0.00 3.58
3823 4164 8.603242 ATGTACTACTTTGTAAGGTCTTTGTG 57.397 34.615 0.00 0.00 0.00 3.33
3826 4167 9.939802 CCTAATGTACTACTTTGTAAGGTCTTT 57.060 33.333 0.00 0.00 0.00 2.52
3827 4168 9.097946 ACCTAATGTACTACTTTGTAAGGTCTT 57.902 33.333 0.00 0.00 29.03 3.01
3828 4169 8.661752 ACCTAATGTACTACTTTGTAAGGTCT 57.338 34.615 0.00 0.00 29.03 3.85
3830 4171 9.539194 ACTACCTAATGTACTACTTTGTAAGGT 57.461 33.333 10.46 10.46 35.41 3.50
3834 4175 9.964354 TCAGACTACCTAATGTACTACTTTGTA 57.036 33.333 0.00 0.00 0.00 2.41
3835 4176 8.874744 TCAGACTACCTAATGTACTACTTTGT 57.125 34.615 0.00 0.00 0.00 2.83
3836 4177 9.790389 CTTCAGACTACCTAATGTACTACTTTG 57.210 37.037 0.00 0.00 0.00 2.77
3837 4178 8.468399 GCTTCAGACTACCTAATGTACTACTTT 58.532 37.037 0.00 0.00 0.00 2.66
3838 4179 7.068470 GGCTTCAGACTACCTAATGTACTACTT 59.932 40.741 0.00 0.00 0.00 2.24
3839 4180 6.546772 GGCTTCAGACTACCTAATGTACTACT 59.453 42.308 0.00 0.00 0.00 2.57
3840 4181 6.320672 TGGCTTCAGACTACCTAATGTACTAC 59.679 42.308 0.00 0.00 0.00 2.73
3841 4182 6.320672 GTGGCTTCAGACTACCTAATGTACTA 59.679 42.308 0.00 0.00 0.00 1.82
3842 4183 5.127356 GTGGCTTCAGACTACCTAATGTACT 59.873 44.000 0.00 0.00 0.00 2.73
3843 4184 5.349809 GTGGCTTCAGACTACCTAATGTAC 58.650 45.833 0.00 0.00 0.00 2.90
3844 4185 4.404715 GGTGGCTTCAGACTACCTAATGTA 59.595 45.833 0.00 0.00 0.00 2.29
3845 4186 3.197983 GGTGGCTTCAGACTACCTAATGT 59.802 47.826 0.00 0.00 0.00 2.71
3846 4187 3.197766 TGGTGGCTTCAGACTACCTAATG 59.802 47.826 0.00 0.00 32.68 1.90
3847 4188 3.450904 TGGTGGCTTCAGACTACCTAAT 58.549 45.455 0.00 0.00 32.68 1.73
3848 4189 2.897350 TGGTGGCTTCAGACTACCTAA 58.103 47.619 0.00 0.00 32.68 2.69
3849 4190 2.615986 TGGTGGCTTCAGACTACCTA 57.384 50.000 0.00 0.00 32.68 3.08
3850 4191 1.834263 GATGGTGGCTTCAGACTACCT 59.166 52.381 0.00 0.00 32.68 3.08
3851 4192 1.834263 AGATGGTGGCTTCAGACTACC 59.166 52.381 0.00 0.00 0.00 3.18
3852 4193 3.618690 AAGATGGTGGCTTCAGACTAC 57.381 47.619 0.00 0.00 0.00 2.73
3853 4194 3.133003 GCTAAGATGGTGGCTTCAGACTA 59.867 47.826 0.00 0.00 0.00 2.59
3854 4195 2.093235 GCTAAGATGGTGGCTTCAGACT 60.093 50.000 0.00 0.00 0.00 3.24
3855 4196 2.284190 GCTAAGATGGTGGCTTCAGAC 58.716 52.381 0.00 0.00 0.00 3.51
3856 4197 1.908619 TGCTAAGATGGTGGCTTCAGA 59.091 47.619 0.00 0.00 0.00 3.27
3857 4198 2.408271 TGCTAAGATGGTGGCTTCAG 57.592 50.000 0.00 0.00 0.00 3.02
3858 4199 2.224744 TGTTGCTAAGATGGTGGCTTCA 60.225 45.455 0.00 0.00 0.00 3.02
3859 4200 2.436417 TGTTGCTAAGATGGTGGCTTC 58.564 47.619 0.00 0.00 0.00 3.86
3860 4201 2.584835 TGTTGCTAAGATGGTGGCTT 57.415 45.000 0.00 0.00 0.00 4.35
3861 4202 2.814805 ATGTTGCTAAGATGGTGGCT 57.185 45.000 0.00 0.00 0.00 4.75
3862 4203 3.056607 ACAAATGTTGCTAAGATGGTGGC 60.057 43.478 0.00 0.00 0.00 5.01
3863 4204 4.672542 CGACAAATGTTGCTAAGATGGTGG 60.673 45.833 0.00 0.00 0.00 4.61
3864 4205 4.406069 CGACAAATGTTGCTAAGATGGTG 58.594 43.478 0.00 0.00 0.00 4.17
3865 4206 4.685169 CGACAAATGTTGCTAAGATGGT 57.315 40.909 0.00 0.00 0.00 3.55
3875 4216 4.508124 GGATAGGAGTAGCGACAAATGTTG 59.492 45.833 0.00 0.00 0.00 3.33
3876 4217 4.161565 TGGATAGGAGTAGCGACAAATGTT 59.838 41.667 0.00 0.00 0.00 2.71
3877 4218 3.704566 TGGATAGGAGTAGCGACAAATGT 59.295 43.478 0.00 0.00 0.00 2.71
3878 4219 4.051922 GTGGATAGGAGTAGCGACAAATG 58.948 47.826 0.00 0.00 0.00 2.32
3879 4220 3.961408 AGTGGATAGGAGTAGCGACAAAT 59.039 43.478 0.00 0.00 0.00 2.32
3880 4221 3.362706 AGTGGATAGGAGTAGCGACAAA 58.637 45.455 0.00 0.00 0.00 2.83
3881 4222 3.014304 AGTGGATAGGAGTAGCGACAA 57.986 47.619 0.00 0.00 0.00 3.18
3882 4223 2.688446 CAAGTGGATAGGAGTAGCGACA 59.312 50.000 0.00 0.00 0.00 4.35
3883 4224 2.950309 TCAAGTGGATAGGAGTAGCGAC 59.050 50.000 0.00 0.00 0.00 5.19
3884 4225 3.292492 TCAAGTGGATAGGAGTAGCGA 57.708 47.619 0.00 0.00 0.00 4.93
3885 4226 3.570125 TCATCAAGTGGATAGGAGTAGCG 59.430 47.826 0.00 0.00 33.95 4.26
3886 4227 5.510520 CCTTCATCAAGTGGATAGGAGTAGC 60.511 48.000 0.00 0.00 33.95 3.58
3887 4228 5.011533 CCCTTCATCAAGTGGATAGGAGTAG 59.988 48.000 0.00 0.00 33.95 2.57
3888 4229 4.901849 CCCTTCATCAAGTGGATAGGAGTA 59.098 45.833 0.00 0.00 33.95 2.59
3889 4230 3.713764 CCCTTCATCAAGTGGATAGGAGT 59.286 47.826 0.00 0.00 33.95 3.85
3890 4231 3.072184 CCCCTTCATCAAGTGGATAGGAG 59.928 52.174 0.00 0.00 33.95 3.69
3891 4232 3.048600 CCCCTTCATCAAGTGGATAGGA 58.951 50.000 0.00 0.00 33.95 2.94
3892 4233 2.780010 ACCCCTTCATCAAGTGGATAGG 59.220 50.000 0.00 0.00 31.72 2.57
3893 4234 3.813443 CACCCCTTCATCAAGTGGATAG 58.187 50.000 0.00 0.00 31.72 2.08
3894 4235 2.092429 GCACCCCTTCATCAAGTGGATA 60.092 50.000 0.00 0.00 31.72 2.59
3895 4236 1.341383 GCACCCCTTCATCAAGTGGAT 60.341 52.381 0.00 0.00 31.72 3.41
3896 4237 0.038166 GCACCCCTTCATCAAGTGGA 59.962 55.000 0.00 0.00 31.72 4.02
3897 4238 0.967380 GGCACCCCTTCATCAAGTGG 60.967 60.000 0.00 0.00 33.46 4.00
3898 4239 1.308069 CGGCACCCCTTCATCAAGTG 61.308 60.000 0.00 0.00 0.00 3.16
3899 4240 1.002134 CGGCACCCCTTCATCAAGT 60.002 57.895 0.00 0.00 0.00 3.16
3900 4241 0.107017 ATCGGCACCCCTTCATCAAG 60.107 55.000 0.00 0.00 0.00 3.02
3901 4242 1.140852 CTATCGGCACCCCTTCATCAA 59.859 52.381 0.00 0.00 0.00 2.57
3902 4243 0.758734 CTATCGGCACCCCTTCATCA 59.241 55.000 0.00 0.00 0.00 3.07
3903 4244 0.759346 ACTATCGGCACCCCTTCATC 59.241 55.000 0.00 0.00 0.00 2.92
3904 4245 0.759346 GACTATCGGCACCCCTTCAT 59.241 55.000 0.00 0.00 0.00 2.57
3905 4246 1.335132 GGACTATCGGCACCCCTTCA 61.335 60.000 0.00 0.00 0.00 3.02
3906 4247 1.446366 GGACTATCGGCACCCCTTC 59.554 63.158 0.00 0.00 0.00 3.46
3907 4248 2.432300 CGGACTATCGGCACCCCTT 61.432 63.158 0.00 0.00 0.00 3.95
3908 4249 2.838225 CGGACTATCGGCACCCCT 60.838 66.667 0.00 0.00 0.00 4.79
3909 4250 2.836360 TCGGACTATCGGCACCCC 60.836 66.667 0.00 0.00 0.00 4.95
3910 4251 2.728817 CTCGGACTATCGGCACCC 59.271 66.667 0.00 0.00 0.00 4.61
3911 4252 2.027751 GCTCGGACTATCGGCACC 59.972 66.667 0.00 0.00 0.00 5.01
3912 4253 1.170919 TAGGCTCGGACTATCGGCAC 61.171 60.000 0.00 0.00 0.00 5.01
3913 4254 0.466739 TTAGGCTCGGACTATCGGCA 60.467 55.000 0.00 0.00 0.00 5.69
3914 4255 0.889306 ATTAGGCTCGGACTATCGGC 59.111 55.000 0.00 0.00 0.00 5.54
3915 4256 2.422832 GGTATTAGGCTCGGACTATCGG 59.577 54.545 0.00 0.00 0.00 4.18
3916 4257 3.079578 TGGTATTAGGCTCGGACTATCG 58.920 50.000 0.00 0.00 0.00 2.92
3917 4258 5.221382 TGTTTGGTATTAGGCTCGGACTATC 60.221 44.000 0.00 0.00 0.00 2.08
3918 4259 4.652421 TGTTTGGTATTAGGCTCGGACTAT 59.348 41.667 0.00 0.00 0.00 2.12
3919 4260 4.025360 TGTTTGGTATTAGGCTCGGACTA 58.975 43.478 0.00 0.00 0.00 2.59
3920 4261 2.835764 TGTTTGGTATTAGGCTCGGACT 59.164 45.455 0.00 0.00 0.00 3.85
3921 4262 3.118884 TCTGTTTGGTATTAGGCTCGGAC 60.119 47.826 0.00 0.00 0.00 4.79
3922 4263 3.101437 TCTGTTTGGTATTAGGCTCGGA 58.899 45.455 0.00 0.00 0.00 4.55
3923 4264 3.195661 GTCTGTTTGGTATTAGGCTCGG 58.804 50.000 0.00 0.00 0.00 4.63
3924 4265 3.857052 TGTCTGTTTGGTATTAGGCTCG 58.143 45.455 0.00 0.00 0.00 5.03
3925 4266 4.508124 CGATGTCTGTTTGGTATTAGGCTC 59.492 45.833 0.00 0.00 0.00 4.70
3926 4267 4.442706 CGATGTCTGTTTGGTATTAGGCT 58.557 43.478 0.00 0.00 0.00 4.58
3927 4268 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
3928 4269 4.034048 GTGCGATGTCTGTTTGGTATTAGG 59.966 45.833 0.00 0.00 0.00 2.69
3929 4270 4.629634 TGTGCGATGTCTGTTTGGTATTAG 59.370 41.667 0.00 0.00 0.00 1.73
3930 4271 4.570930 TGTGCGATGTCTGTTTGGTATTA 58.429 39.130 0.00 0.00 0.00 0.98
3931 4272 3.407698 TGTGCGATGTCTGTTTGGTATT 58.592 40.909 0.00 0.00 0.00 1.89
3932 4273 3.052455 TGTGCGATGTCTGTTTGGTAT 57.948 42.857 0.00 0.00 0.00 2.73
3933 4274 2.535012 TGTGCGATGTCTGTTTGGTA 57.465 45.000 0.00 0.00 0.00 3.25
3934 4275 1.674359 TTGTGCGATGTCTGTTTGGT 58.326 45.000 0.00 0.00 0.00 3.67
3935 4276 2.772568 TTTGTGCGATGTCTGTTTGG 57.227 45.000 0.00 0.00 0.00 3.28
3936 4277 2.406024 GCATTTGTGCGATGTCTGTTTG 59.594 45.455 0.00 0.00 0.00 2.93
3937 4278 2.607771 GGCATTTGTGCGATGTCTGTTT 60.608 45.455 0.00 0.00 35.24 2.83
3938 4279 1.068333 GGCATTTGTGCGATGTCTGTT 60.068 47.619 0.00 0.00 35.24 3.16
3939 4280 0.523072 GGCATTTGTGCGATGTCTGT 59.477 50.000 0.00 0.00 35.24 3.41
3940 4281 0.806868 AGGCATTTGTGCGATGTCTG 59.193 50.000 0.00 0.00 38.00 3.51
3941 4282 2.401583 TAGGCATTTGTGCGATGTCT 57.598 45.000 0.00 0.00 41.87 3.41
3942 4283 2.161410 TGTTAGGCATTTGTGCGATGTC 59.839 45.455 0.00 0.00 35.24 3.06
3943 4284 2.158559 TGTTAGGCATTTGTGCGATGT 58.841 42.857 0.00 0.00 35.24 3.06
3944 4285 2.917701 TGTTAGGCATTTGTGCGATG 57.082 45.000 0.00 0.00 35.24 3.84
3945 4286 3.282021 AGATGTTAGGCATTTGTGCGAT 58.718 40.909 0.00 0.00 38.06 4.58
3946 4287 2.710377 AGATGTTAGGCATTTGTGCGA 58.290 42.857 0.00 0.00 38.06 5.10
3947 4288 4.614555 TTAGATGTTAGGCATTTGTGCG 57.385 40.909 0.00 0.00 38.06 5.34
3948 4289 4.800471 GCTTTAGATGTTAGGCATTTGTGC 59.200 41.667 0.00 0.00 38.06 4.57
3949 4290 5.343249 GGCTTTAGATGTTAGGCATTTGTG 58.657 41.667 0.00 0.00 38.06 3.33
3950 4291 4.096382 CGGCTTTAGATGTTAGGCATTTGT 59.904 41.667 0.00 0.00 38.06 2.83
3951 4292 4.498009 CCGGCTTTAGATGTTAGGCATTTG 60.498 45.833 0.00 0.00 38.06 2.32
3952 4293 3.632145 CCGGCTTTAGATGTTAGGCATTT 59.368 43.478 0.00 0.00 38.06 2.32
3953 4294 3.118038 TCCGGCTTTAGATGTTAGGCATT 60.118 43.478 0.00 0.00 38.06 3.56
3954 4295 2.438021 TCCGGCTTTAGATGTTAGGCAT 59.562 45.455 0.00 0.00 41.24 4.40
3955 4296 1.834896 TCCGGCTTTAGATGTTAGGCA 59.165 47.619 0.00 0.00 34.43 4.75
3956 4297 2.484889 CTCCGGCTTTAGATGTTAGGC 58.515 52.381 0.00 0.00 0.00 3.93
3957 4298 2.807108 GCCTCCGGCTTTAGATGTTAGG 60.807 54.545 0.00 0.00 46.69 2.69
3958 4299 2.484889 GCCTCCGGCTTTAGATGTTAG 58.515 52.381 0.00 0.00 46.69 2.34
3959 4300 2.614829 GCCTCCGGCTTTAGATGTTA 57.385 50.000 0.00 0.00 46.69 2.41
3960 4301 3.478540 GCCTCCGGCTTTAGATGTT 57.521 52.632 0.00 0.00 46.69 2.71
3981 4322 4.657824 AGTGCGTCGGACCGGTTG 62.658 66.667 15.25 4.72 0.00 3.77
3982 4323 4.353437 GAGTGCGTCGGACCGGTT 62.353 66.667 15.25 0.00 0.00 4.44
3984 4325 4.477975 GAGAGTGCGTCGGACCGG 62.478 72.222 15.25 0.00 0.00 5.28
3985 4326 3.052620 ATGAGAGTGCGTCGGACCG 62.053 63.158 13.70 7.84 0.00 4.79
3986 4327 1.517257 CATGAGAGTGCGTCGGACC 60.517 63.158 13.70 5.33 0.00 4.46
3987 4328 1.073216 CACATGAGAGTGCGTCGGAC 61.073 60.000 9.08 9.08 32.04 4.79
3988 4329 1.212751 CACATGAGAGTGCGTCGGA 59.787 57.895 0.00 0.00 32.04 4.55
3989 4330 1.073216 GACACATGAGAGTGCGTCGG 61.073 60.000 0.00 0.00 43.23 4.79
3990 4331 1.398762 CGACACATGAGAGTGCGTCG 61.399 60.000 0.00 3.55 44.70 5.12
3991 4332 0.387367 ACGACACATGAGAGTGCGTC 60.387 55.000 0.00 0.00 43.39 5.19
3992 4333 0.387367 GACGACACATGAGAGTGCGT 60.387 55.000 0.00 13.30 46.58 5.24
3993 4334 1.398762 CGACGACACATGAGAGTGCG 61.399 60.000 0.00 0.00 43.23 5.34
3994 4335 1.678269 GCGACGACACATGAGAGTGC 61.678 60.000 0.00 1.83 43.23 4.40
3995 4336 1.073216 GGCGACGACACATGAGAGTG 61.073 60.000 0.00 0.00 44.93 3.51
3996 4337 1.213013 GGCGACGACACATGAGAGT 59.787 57.895 0.00 0.00 0.00 3.24
3997 4338 4.079090 GGCGACGACACATGAGAG 57.921 61.111 0.00 0.00 0.00 3.20
4009 4350 3.195698 GTGGAAGATGGCGGCGAC 61.196 66.667 12.98 9.31 0.00 5.19
4010 4351 4.467084 GGTGGAAGATGGCGGCGA 62.467 66.667 12.98 0.00 0.00 5.54
4011 4352 4.776322 TGGTGGAAGATGGCGGCG 62.776 66.667 0.51 0.51 0.00 6.46
4012 4353 1.728490 GATTGGTGGAAGATGGCGGC 61.728 60.000 0.00 0.00 0.00 6.53
4013 4354 1.103398 GGATTGGTGGAAGATGGCGG 61.103 60.000 0.00 0.00 0.00 6.13
4014 4355 0.394216 TGGATTGGTGGAAGATGGCG 60.394 55.000 0.00 0.00 0.00 5.69
4015 4356 1.959282 GATGGATTGGTGGAAGATGGC 59.041 52.381 0.00 0.00 0.00 4.40
4016 4357 3.589951 AGATGGATTGGTGGAAGATGG 57.410 47.619 0.00 0.00 0.00 3.51
4017 4358 4.529897 TGAAGATGGATTGGTGGAAGATG 58.470 43.478 0.00 0.00 0.00 2.90
4018 4359 4.476113 TCTGAAGATGGATTGGTGGAAGAT 59.524 41.667 0.00 0.00 0.00 2.40
4019 4360 3.845992 TCTGAAGATGGATTGGTGGAAGA 59.154 43.478 0.00 0.00 0.00 2.87
4020 4361 4.197750 CTCTGAAGATGGATTGGTGGAAG 58.802 47.826 0.00 0.00 0.00 3.46
4021 4362 3.623203 GCTCTGAAGATGGATTGGTGGAA 60.623 47.826 0.00 0.00 0.00 3.53
4022 4363 2.092753 GCTCTGAAGATGGATTGGTGGA 60.093 50.000 0.00 0.00 0.00 4.02
4023 4364 2.295885 GCTCTGAAGATGGATTGGTGG 58.704 52.381 0.00 0.00 0.00 4.61
4024 4365 2.943690 CTGCTCTGAAGATGGATTGGTG 59.056 50.000 0.00 0.00 0.00 4.17
4025 4366 2.842496 TCTGCTCTGAAGATGGATTGGT 59.158 45.455 0.00 0.00 0.00 3.67
4026 4367 3.555527 TCTGCTCTGAAGATGGATTGG 57.444 47.619 0.00 0.00 0.00 3.16
4027 4368 4.942483 AGTTTCTGCTCTGAAGATGGATTG 59.058 41.667 0.00 0.00 0.00 2.67
4028 4369 5.176741 AGTTTCTGCTCTGAAGATGGATT 57.823 39.130 0.00 0.00 0.00 3.01
4029 4370 4.840716 AGTTTCTGCTCTGAAGATGGAT 57.159 40.909 0.00 0.00 0.00 3.41
4030 4371 5.482908 GTTAGTTTCTGCTCTGAAGATGGA 58.517 41.667 0.00 0.00 0.00 3.41
4031 4372 4.328440 CGTTAGTTTCTGCTCTGAAGATGG 59.672 45.833 0.00 0.00 0.00 3.51
4032 4373 4.201666 GCGTTAGTTTCTGCTCTGAAGATG 60.202 45.833 0.00 0.00 0.00 2.90
4033 4374 3.929610 GCGTTAGTTTCTGCTCTGAAGAT 59.070 43.478 0.00 0.00 0.00 2.40
4034 4375 3.243737 TGCGTTAGTTTCTGCTCTGAAGA 60.244 43.478 0.00 0.00 0.00 2.87
4035 4376 3.059884 TGCGTTAGTTTCTGCTCTGAAG 58.940 45.455 0.00 0.00 0.00 3.02
4036 4377 2.800544 GTGCGTTAGTTTCTGCTCTGAA 59.199 45.455 0.00 0.00 0.00 3.02
4037 4378 2.404215 GTGCGTTAGTTTCTGCTCTGA 58.596 47.619 0.00 0.00 0.00 3.27
4038 4379 1.461127 GGTGCGTTAGTTTCTGCTCTG 59.539 52.381 0.00 0.00 0.00 3.35
4039 4380 1.070134 TGGTGCGTTAGTTTCTGCTCT 59.930 47.619 0.00 0.00 0.00 4.09
4040 4381 1.508632 TGGTGCGTTAGTTTCTGCTC 58.491 50.000 0.00 0.00 0.00 4.26
4041 4382 1.961793 TTGGTGCGTTAGTTTCTGCT 58.038 45.000 0.00 0.00 0.00 4.24
4042 4383 2.724839 CGATTGGTGCGTTAGTTTCTGC 60.725 50.000 0.00 0.00 0.00 4.26
4043 4384 2.478894 ACGATTGGTGCGTTAGTTTCTG 59.521 45.455 0.00 0.00 39.18 3.02
4044 4385 2.762745 ACGATTGGTGCGTTAGTTTCT 58.237 42.857 0.00 0.00 39.18 2.52
4045 4386 4.084433 TGTTACGATTGGTGCGTTAGTTTC 60.084 41.667 0.00 0.00 42.62 2.78
4046 4387 3.808726 TGTTACGATTGGTGCGTTAGTTT 59.191 39.130 0.00 0.00 42.62 2.66
4047 4388 3.391965 TGTTACGATTGGTGCGTTAGTT 58.608 40.909 0.00 0.00 42.62 2.24
4048 4389 3.029320 TGTTACGATTGGTGCGTTAGT 57.971 42.857 0.00 0.00 42.62 2.24
4049 4390 4.593597 AATGTTACGATTGGTGCGTTAG 57.406 40.909 0.00 0.00 42.62 2.34
4050 4391 4.329528 GGTAATGTTACGATTGGTGCGTTA 59.670 41.667 0.00 0.00 42.62 3.18
4051 4392 3.125658 GGTAATGTTACGATTGGTGCGTT 59.874 43.478 0.00 0.00 42.62 4.84
4052 4393 2.674357 GGTAATGTTACGATTGGTGCGT 59.326 45.455 0.00 0.00 45.01 5.24
4053 4394 2.933906 AGGTAATGTTACGATTGGTGCG 59.066 45.455 0.00 0.00 34.50 5.34
4054 4395 5.756347 TCATAGGTAATGTTACGATTGGTGC 59.244 40.000 0.00 0.00 36.89 5.01
4055 4396 7.962964 ATCATAGGTAATGTTACGATTGGTG 57.037 36.000 0.00 0.00 36.89 4.17
4056 4397 9.706691 CTAATCATAGGTAATGTTACGATTGGT 57.293 33.333 11.01 0.00 36.89 3.67
4057 4398 8.656849 GCTAATCATAGGTAATGTTACGATTGG 58.343 37.037 11.01 9.83 36.89 3.16
4058 4399 9.424319 AGCTAATCATAGGTAATGTTACGATTG 57.576 33.333 11.01 4.07 38.07 2.67
4061 4402 9.293404 AGTAGCTAATCATAGGTAATGTTACGA 57.707 33.333 0.00 0.00 42.17 3.43
4062 4403 9.909644 AAGTAGCTAATCATAGGTAATGTTACG 57.090 33.333 0.00 0.00 42.17 3.18
4116 4457 3.839293 CGCAACCGGAATTTTATTCCAA 58.161 40.909 9.46 0.00 38.49 3.53
4118 4459 2.190161 GCGCAACCGGAATTTTATTCC 58.810 47.619 9.46 8.13 35.27 3.01
4130 4471 1.127951 CTTAGTTTAGTGGCGCAACCG 59.872 52.381 12.38 0.00 43.94 4.44
4132 4473 1.804748 AGCTTAGTTTAGTGGCGCAAC 59.195 47.619 6.88 6.88 0.00 4.17
4166 4507 8.515473 ACAAAACAAGATAACCGAAATTTAGC 57.485 30.769 0.00 0.00 0.00 3.09
4172 4513 8.648968 GTTCAAAACAAAACAAGATAACCGAAA 58.351 29.630 0.00 0.00 0.00 3.46
4175 4516 7.513190 TGTTCAAAACAAAACAAGATAACCG 57.487 32.000 0.00 0.00 38.72 4.44
4197 4538 3.630769 CCATATCTGTTTGCATGAGCTGT 59.369 43.478 0.00 0.00 42.74 4.40
4201 4542 3.220110 AGGCCATATCTGTTTGCATGAG 58.780 45.455 5.01 0.00 0.00 2.90
4245 4601 3.068732 GCTATTTGCCAGGGAATCCTTTC 59.931 47.826 0.00 0.00 42.67 2.62
4249 4605 2.371658 AGCTATTTGCCAGGGAATCC 57.628 50.000 0.00 0.00 44.23 3.01
4273 4629 9.959721 TCTTTACAAGAAATACTATTTGAGGCT 57.040 29.630 0.00 0.00 33.83 4.58
4308 4664 3.231818 TCTTTACAAATCCCGCCCAAAA 58.768 40.909 0.00 0.00 0.00 2.44
4309 4665 2.877866 TCTTTACAAATCCCGCCCAAA 58.122 42.857 0.00 0.00 0.00 3.28
4310 4666 2.588464 TCTTTACAAATCCCGCCCAA 57.412 45.000 0.00 0.00 0.00 4.12
4311 4667 2.588464 TTCTTTACAAATCCCGCCCA 57.412 45.000 0.00 0.00 0.00 5.36
4312 4668 3.699538 AGAATTCTTTACAAATCCCGCCC 59.300 43.478 0.88 0.00 0.00 6.13
4314 4670 5.949735 TCAAGAATTCTTTACAAATCCCGC 58.050 37.500 18.16 0.00 33.11 6.13
4315 4671 7.989826 AGATCAAGAATTCTTTACAAATCCCG 58.010 34.615 18.16 3.50 33.11 5.14
4316 4672 8.409371 GGAGATCAAGAATTCTTTACAAATCCC 58.591 37.037 18.16 13.38 33.11 3.85
4317 4673 9.183368 AGGAGATCAAGAATTCTTTACAAATCC 57.817 33.333 18.16 18.00 33.11 3.01
4321 4677 9.877178 GAGTAGGAGATCAAGAATTCTTTACAA 57.123 33.333 18.16 5.06 33.11 2.41
4322 4678 9.261035 AGAGTAGGAGATCAAGAATTCTTTACA 57.739 33.333 18.16 5.90 33.11 2.41
4327 4683 8.367156 GCAATAGAGTAGGAGATCAAGAATTCT 58.633 37.037 0.88 0.88 0.00 2.40
4328 4684 8.147058 TGCAATAGAGTAGGAGATCAAGAATTC 58.853 37.037 0.00 0.00 0.00 2.17
4329 4685 8.027524 TGCAATAGAGTAGGAGATCAAGAATT 57.972 34.615 0.00 0.00 0.00 2.17
4347 4703 7.201767 CCCCTGAAAACTCTTATCTTGCAATAG 60.202 40.741 0.00 0.00 0.00 1.73
4466 4822 7.547370 GGGATGAGGATATGAGATTTAGTTTCG 59.453 40.741 0.00 0.00 0.00 3.46
4484 4840 3.048600 TGGTCCATTCTTAGGGATGAGG 58.951 50.000 0.00 0.00 36.47 3.86
4535 4891 5.123027 CCAGTTCAGAAGTTCCATTTCTAGC 59.877 44.000 0.00 0.00 33.30 3.42
4642 4998 1.534163 CGGACGTTTCCTCTTTTTCCC 59.466 52.381 0.00 0.00 40.23 3.97
4649 5005 2.960170 CCGTCGGACGTTTCCTCT 59.040 61.111 26.72 0.00 40.58 3.69
4787 5143 5.434706 CATAGTATGTGCACATTAACAGCG 58.565 41.667 35.45 16.51 37.76 5.18
4806 5162 0.738975 TCGTCTTGTCGCTCCCATAG 59.261 55.000 0.00 0.00 0.00 2.23
4826 5182 0.812811 TCATCTTCTGCTGATGCGCC 60.813 55.000 4.18 0.00 43.34 6.53
4857 5213 8.181904 AGCCTCTTTGAGAAATCTCTAGATAG 57.818 38.462 11.45 9.18 43.25 2.08
5153 5509 3.104512 CATACCACTGTCTGGAACCCTA 58.895 50.000 0.00 0.00 43.95 3.53
5162 5518 4.532126 TGAAATCAGACCATACCACTGTCT 59.468 41.667 0.00 0.00 39.86 3.41
5174 5530 4.257731 GGAGAAGACCTTGAAATCAGACC 58.742 47.826 0.00 0.00 0.00 3.85
5176 5532 4.171234 AGGGAGAAGACCTTGAAATCAGA 58.829 43.478 0.00 0.00 33.64 3.27
5671 6031 3.657727 TCTCCCTCAACAATCCCTTCTTT 59.342 43.478 0.00 0.00 0.00 2.52
5679 6044 9.183368 AGAAAATTCTATTCTCCCTCAACAATC 57.817 33.333 0.00 0.00 35.34 2.67
5680 6045 9.183368 GAGAAAATTCTATTCTCCCTCAACAAT 57.817 33.333 7.00 0.00 44.49 2.71
5681 6046 8.567285 GAGAAAATTCTATTCTCCCTCAACAA 57.433 34.615 7.00 0.00 44.49 2.83
5887 6252 8.879342 TGGTAACATTTTCCAAATACAAGTTG 57.121 30.769 0.00 0.00 46.17 3.16
6097 6462 2.958355 TGCTTCTTGGTTTTCTTCAGGG 59.042 45.455 0.00 0.00 0.00 4.45
6104 6469 4.754322 TCCTTGTTTGCTTCTTGGTTTTC 58.246 39.130 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.