Multiple sequence alignment - TraesCS1D01G264900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G264900 chr1D 100.000 5550 0 0 1 5550 360482353 360476804 0.000000e+00 10250.0
1 TraesCS1D01G264900 chr1D 89.655 116 8 3 3404 3517 310858484 310858597 1.610000e-30 145.0
2 TraesCS1D01G264900 chr1B 92.806 2808 105 37 657 3420 482717034 482714280 0.000000e+00 3976.0
3 TraesCS1D01G264900 chr1B 88.989 1553 78 33 3514 5027 482714285 482712787 0.000000e+00 1834.0
4 TraesCS1D01G264900 chr1B 86.399 1022 57 35 4580 5550 482713247 482712257 0.000000e+00 1042.0
5 TraesCS1D01G264900 chr1B 83.376 391 29 13 210 566 482717471 482717083 4.140000e-86 329.0
6 TraesCS1D01G264900 chr1B 79.500 400 35 19 210 565 482748630 482748234 2.000000e-59 241.0
7 TraesCS1D01G264900 chr1A 93.169 1259 52 8 3630 4854 460331784 460330526 0.000000e+00 1818.0
8 TraesCS1D01G264900 chr1A 87.478 1158 66 41 591 1715 460334681 460333570 0.000000e+00 1262.0
9 TraesCS1D01G264900 chr1A 94.026 837 25 7 2558 3382 460332828 460332005 0.000000e+00 1245.0
10 TraesCS1D01G264900 chr1A 93.712 827 29 14 1713 2517 460333649 460332824 0.000000e+00 1218.0
11 TraesCS1D01G264900 chr1A 82.314 605 53 24 4985 5550 460330306 460329717 5.030000e-130 475.0
12 TraesCS1D01G264900 chr1A 86.145 332 26 15 273 599 460335148 460334832 1.910000e-89 340.0
13 TraesCS1D01G264900 chr1A 100.000 29 0 0 3392 3420 460331895 460331867 3.000000e-03 54.7
14 TraesCS1D01G264900 chr3A 87.838 148 18 0 2865 3012 652027855 652027708 2.060000e-39 174.0
15 TraesCS1D01G264900 chr3A 92.381 105 7 1 3419 3522 8012203 8012099 1.250000e-31 148.0
16 TraesCS1D01G264900 chr3A 79.675 123 22 3 1057 1178 633052905 633053025 9.910000e-13 86.1
17 TraesCS1D01G264900 chr3D 87.162 148 19 0 2865 3012 516880783 516880636 9.560000e-38 169.0
18 TraesCS1D01G264900 chr3D 94.231 104 5 1 3420 3522 94028570 94028673 2.070000e-34 158.0
19 TraesCS1D01G264900 chr3D 90.909 110 9 1 3418 3526 435678524 435678633 4.480000e-31 147.0
20 TraesCS1D01G264900 chr3D 92.000 100 8 0 3419 3518 8363826 8363727 2.080000e-29 141.0
21 TraesCS1D01G264900 chr3D 79.699 133 23 4 1057 1187 490834436 490834566 5.920000e-15 93.5
22 TraesCS1D01G264900 chr3B 87.162 148 19 0 2865 3012 680423066 680423213 9.560000e-38 169.0
23 TraesCS1D01G264900 chr3B 79.231 130 22 5 1057 1185 652734768 652734893 9.910000e-13 86.1
24 TraesCS1D01G264900 chr7D 91.818 110 8 1 3418 3526 24495157 24495048 9.630000e-33 152.0
25 TraesCS1D01G264900 chr7B 93.000 100 6 1 3419 3518 148477257 148477355 1.610000e-30 145.0
26 TraesCS1D01G264900 chr4D 93.000 100 6 1 3419 3518 85487439 85487341 1.610000e-30 145.0
27 TraesCS1D01G264900 chr6B 92.079 101 7 1 3418 3518 704410256 704410355 2.080000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G264900 chr1D 360476804 360482353 5549 True 10250.00 10250 100.000000 1 5550 1 chr1D.!!$R1 5549
1 TraesCS1D01G264900 chr1B 482712257 482717471 5214 True 1795.25 3976 87.892500 210 5550 4 chr1B.!!$R2 5340
2 TraesCS1D01G264900 chr1A 460329717 460335148 5431 True 916.10 1818 90.977714 273 5550 7 chr1A.!!$R1 5277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.317603 GTCGCCAAGATGCATGATGC 60.318 55.000 11.12 11.12 45.29 3.91 F
100 101 0.383949 TGCGGTTTCAAAGGAGCAAC 59.616 50.000 0.00 0.00 0.00 4.17 F
797 1006 0.470268 GCGATACCTTCCCCTCTCCT 60.470 60.000 0.00 0.00 0.00 3.69 F
1918 2183 0.039708 GCTGAAACTGTTGCTCCTGC 60.040 55.000 0.00 0.53 40.20 4.85 F
3433 3827 1.431633 TGAGTTACTCCCTCTGTCCCA 59.568 52.381 10.10 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2171 0.609957 TGGAATGGCAGGAGCAACAG 60.610 55.000 0.00 0.00 44.61 3.16 R
1914 2179 2.062971 AATGTAGCTGGAATGGCAGG 57.937 50.000 0.00 0.00 0.00 4.85 R
2380 2662 1.332375 ACAATTGTTGTCGAACCCACG 59.668 47.619 4.92 0.00 40.56 4.94 R
3502 3896 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37 R
4989 5546 0.028505 CAATCATGCAGCTGTACGGC 59.971 55.000 19.39 19.39 40.28 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.293114 GTACCAAACCATTGTACAAATCTTTG 57.707 34.615 13.23 17.08 38.22 2.77
42 43 6.287525 ACCAAACCATTGTACAAATCTTTGG 58.712 36.000 30.16 30.16 40.53 3.28
43 44 6.098982 ACCAAACCATTGTACAAATCTTTGGA 59.901 34.615 34.06 9.84 38.70 3.53
44 45 6.989169 CCAAACCATTGTACAAATCTTTGGAA 59.011 34.615 29.26 4.32 37.88 3.53
45 46 7.497249 CCAAACCATTGTACAAATCTTTGGAAA 59.503 33.333 29.26 3.89 37.88 3.13
46 47 8.887717 CAAACCATTGTACAAATCTTTGGAAAA 58.112 29.630 25.05 0.62 42.34 2.29
47 48 9.625747 AAACCATTGTACAAATCTTTGGAAAAT 57.374 25.926 25.05 10.25 39.06 1.82
48 49 8.831715 ACCATTGTACAAATCTTTGGAAAATC 57.168 30.769 25.05 0.00 36.92 2.17
49 50 8.428063 ACCATTGTACAAATCTTTGGAAAATCA 58.572 29.630 25.05 0.00 36.92 2.57
50 51 9.270640 CCATTGTACAAATCTTTGGAAAATCAA 57.729 29.630 16.86 0.52 36.92 2.57
54 55 9.190858 TGTACAAATCTTTGGAAAATCAAATCG 57.809 29.630 7.51 0.00 42.34 3.34
55 56 7.656707 ACAAATCTTTGGAAAATCAAATCGG 57.343 32.000 7.51 0.00 42.34 4.18
56 57 6.147656 ACAAATCTTTGGAAAATCAAATCGGC 59.852 34.615 7.51 0.00 42.34 5.54
57 58 3.832276 TCTTTGGAAAATCAAATCGGCG 58.168 40.909 0.00 0.00 36.24 6.46
58 59 3.504134 TCTTTGGAAAATCAAATCGGCGA 59.496 39.130 13.87 13.87 36.24 5.54
59 60 3.924918 TTGGAAAATCAAATCGGCGAA 57.075 38.095 15.93 0.00 0.00 4.70
60 61 3.485947 TGGAAAATCAAATCGGCGAAG 57.514 42.857 15.93 7.40 0.00 3.79
61 62 2.817258 TGGAAAATCAAATCGGCGAAGT 59.183 40.909 15.93 1.21 0.00 3.01
62 63 3.254657 TGGAAAATCAAATCGGCGAAGTT 59.745 39.130 15.93 8.69 0.00 2.66
63 64 4.456222 TGGAAAATCAAATCGGCGAAGTTA 59.544 37.500 15.93 0.00 0.00 2.24
64 65 5.028375 GGAAAATCAAATCGGCGAAGTTAG 58.972 41.667 15.93 2.58 0.00 2.34
65 66 5.391629 GGAAAATCAAATCGGCGAAGTTAGT 60.392 40.000 15.93 0.00 0.00 2.24
66 67 4.859629 AATCAAATCGGCGAAGTTAGTC 57.140 40.909 15.93 0.00 0.00 2.59
67 68 2.256174 TCAAATCGGCGAAGTTAGTCG 58.744 47.619 15.93 3.38 43.98 4.18
76 77 1.324736 CGAAGTTAGTCGCCAAGATGC 59.675 52.381 0.00 0.00 33.66 3.91
77 78 2.346803 GAAGTTAGTCGCCAAGATGCA 58.653 47.619 0.00 0.00 0.00 3.96
78 79 2.698855 AGTTAGTCGCCAAGATGCAT 57.301 45.000 0.00 0.00 0.00 3.96
79 80 2.283298 AGTTAGTCGCCAAGATGCATG 58.717 47.619 2.46 0.00 0.00 4.06
80 81 2.093500 AGTTAGTCGCCAAGATGCATGA 60.093 45.455 2.46 0.00 0.00 3.07
81 82 2.874701 GTTAGTCGCCAAGATGCATGAT 59.125 45.455 2.46 0.00 0.00 2.45
82 83 1.306148 AGTCGCCAAGATGCATGATG 58.694 50.000 2.46 2.20 0.00 3.07
83 84 0.317603 GTCGCCAAGATGCATGATGC 60.318 55.000 11.12 11.12 45.29 3.91
94 95 1.632422 GCATGATGCGGTTTCAAAGG 58.368 50.000 0.00 0.00 31.71 3.11
95 96 1.202114 GCATGATGCGGTTTCAAAGGA 59.798 47.619 0.00 0.00 31.71 3.36
96 97 2.733227 GCATGATGCGGTTTCAAAGGAG 60.733 50.000 0.00 0.00 31.71 3.69
97 98 0.881118 TGATGCGGTTTCAAAGGAGC 59.119 50.000 0.00 0.00 0.00 4.70
98 99 0.881118 GATGCGGTTTCAAAGGAGCA 59.119 50.000 0.00 0.00 39.02 4.26
99 100 1.269448 GATGCGGTTTCAAAGGAGCAA 59.731 47.619 0.00 0.00 38.15 3.91
100 101 0.383949 TGCGGTTTCAAAGGAGCAAC 59.616 50.000 0.00 0.00 0.00 4.17
101 102 0.383949 GCGGTTTCAAAGGAGCAACA 59.616 50.000 0.00 0.00 0.00 3.33
102 103 1.600413 GCGGTTTCAAAGGAGCAACAG 60.600 52.381 0.00 0.00 0.00 3.16
103 104 1.600413 CGGTTTCAAAGGAGCAACAGC 60.600 52.381 0.00 0.00 0.00 4.40
104 105 1.408702 GGTTTCAAAGGAGCAACAGCA 59.591 47.619 0.00 0.00 0.00 4.41
105 106 2.159114 GGTTTCAAAGGAGCAACAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
106 107 3.118542 GTTTCAAAGGAGCAACAGCAAG 58.881 45.455 0.00 0.00 0.00 4.01
107 108 0.670162 TCAAAGGAGCAACAGCAAGC 59.330 50.000 0.00 0.00 0.00 4.01
108 109 0.662374 CAAAGGAGCAACAGCAAGCG 60.662 55.000 0.00 0.00 35.48 4.68
109 110 1.103398 AAAGGAGCAACAGCAAGCGT 61.103 50.000 0.00 0.00 35.48 5.07
110 111 1.789078 AAGGAGCAACAGCAAGCGTG 61.789 55.000 0.00 0.00 35.48 5.34
124 125 3.604130 GCGTGCTGCGACATTTTAT 57.396 47.368 5.49 0.00 44.77 1.40
125 126 1.895051 GCGTGCTGCGACATTTTATT 58.105 45.000 5.49 0.00 44.77 1.40
126 127 1.578915 GCGTGCTGCGACATTTTATTG 59.421 47.619 5.49 0.00 44.77 1.90
127 128 2.176369 CGTGCTGCGACATTTTATTGG 58.824 47.619 0.00 0.00 44.77 3.16
128 129 2.159585 CGTGCTGCGACATTTTATTGGA 60.160 45.455 0.00 0.00 44.77 3.53
129 130 3.171277 GTGCTGCGACATTTTATTGGAC 58.829 45.455 0.00 0.00 0.00 4.02
130 131 2.159585 TGCTGCGACATTTTATTGGACG 60.160 45.455 0.00 0.00 0.00 4.79
131 132 2.440501 CTGCGACATTTTATTGGACGC 58.559 47.619 0.00 0.00 42.37 5.19
132 133 1.807142 TGCGACATTTTATTGGACGCA 59.193 42.857 0.00 0.00 45.92 5.24
133 134 2.421775 TGCGACATTTTATTGGACGCAT 59.578 40.909 0.00 0.00 44.58 4.73
134 135 3.623510 TGCGACATTTTATTGGACGCATA 59.376 39.130 0.00 0.00 44.58 3.14
135 136 4.211389 GCGACATTTTATTGGACGCATAG 58.789 43.478 0.00 0.00 41.98 2.23
136 137 4.211389 CGACATTTTATTGGACGCATAGC 58.789 43.478 0.00 0.00 0.00 2.97
137 138 4.260579 CGACATTTTATTGGACGCATAGCA 60.261 41.667 0.00 0.00 0.00 3.49
138 139 5.560760 CGACATTTTATTGGACGCATAGCAT 60.561 40.000 0.00 0.00 0.00 3.79
139 140 6.347321 CGACATTTTATTGGACGCATAGCATA 60.347 38.462 0.00 0.00 0.00 3.14
140 141 6.902341 ACATTTTATTGGACGCATAGCATAG 58.098 36.000 0.00 0.00 0.00 2.23
141 142 6.710295 ACATTTTATTGGACGCATAGCATAGA 59.290 34.615 0.00 0.00 0.00 1.98
142 143 7.228507 ACATTTTATTGGACGCATAGCATAGAA 59.771 33.333 0.00 0.00 0.00 2.10
143 144 6.785488 TTTATTGGACGCATAGCATAGAAG 57.215 37.500 0.00 0.00 0.00 2.85
144 145 4.607293 ATTGGACGCATAGCATAGAAGA 57.393 40.909 0.00 0.00 0.00 2.87
145 146 4.400529 TTGGACGCATAGCATAGAAGAA 57.599 40.909 0.00 0.00 0.00 2.52
146 147 3.982475 TGGACGCATAGCATAGAAGAAG 58.018 45.455 0.00 0.00 0.00 2.85
147 148 3.636764 TGGACGCATAGCATAGAAGAAGA 59.363 43.478 0.00 0.00 0.00 2.87
148 149 3.984633 GGACGCATAGCATAGAAGAAGAC 59.015 47.826 0.00 0.00 0.00 3.01
149 150 4.499865 GGACGCATAGCATAGAAGAAGACA 60.500 45.833 0.00 0.00 0.00 3.41
150 151 4.615949 ACGCATAGCATAGAAGAAGACAG 58.384 43.478 0.00 0.00 0.00 3.51
151 152 4.098654 ACGCATAGCATAGAAGAAGACAGT 59.901 41.667 0.00 0.00 0.00 3.55
152 153 4.443725 CGCATAGCATAGAAGAAGACAGTG 59.556 45.833 0.00 0.00 0.00 3.66
153 154 4.749099 GCATAGCATAGAAGAAGACAGTGG 59.251 45.833 0.00 0.00 0.00 4.00
154 155 5.452496 GCATAGCATAGAAGAAGACAGTGGA 60.452 44.000 0.00 0.00 0.00 4.02
155 156 6.577103 CATAGCATAGAAGAAGACAGTGGAA 58.423 40.000 0.00 0.00 0.00 3.53
156 157 4.826556 AGCATAGAAGAAGACAGTGGAAC 58.173 43.478 0.00 0.00 0.00 3.62
157 158 4.284490 AGCATAGAAGAAGACAGTGGAACA 59.716 41.667 0.00 0.00 41.43 3.18
185 186 8.112016 AGTCTTTAAAGAAAAATCACTAGCCC 57.888 34.615 19.30 2.46 36.68 5.19
186 187 7.724061 AGTCTTTAAAGAAAAATCACTAGCCCA 59.276 33.333 19.30 0.00 36.68 5.36
187 188 8.357402 GTCTTTAAAGAAAAATCACTAGCCCAA 58.643 33.333 19.30 0.00 36.68 4.12
188 189 8.919145 TCTTTAAAGAAAAATCACTAGCCCAAA 58.081 29.630 15.57 0.00 30.73 3.28
189 190 9.541143 CTTTAAAGAAAAATCACTAGCCCAAAA 57.459 29.630 9.77 0.00 0.00 2.44
190 191 9.541143 TTTAAAGAAAAATCACTAGCCCAAAAG 57.459 29.630 0.00 0.00 0.00 2.27
191 192 5.139435 AGAAAAATCACTAGCCCAAAAGC 57.861 39.130 0.00 0.00 0.00 3.51
192 193 4.588528 AGAAAAATCACTAGCCCAAAAGCA 59.411 37.500 0.00 0.00 34.23 3.91
193 194 4.953940 AAAATCACTAGCCCAAAAGCAA 57.046 36.364 0.00 0.00 34.23 3.91
194 195 4.953940 AAATCACTAGCCCAAAAGCAAA 57.046 36.364 0.00 0.00 34.23 3.68
195 196 4.953940 AATCACTAGCCCAAAAGCAAAA 57.046 36.364 0.00 0.00 34.23 2.44
196 197 5.488262 AATCACTAGCCCAAAAGCAAAAT 57.512 34.783 0.00 0.00 34.23 1.82
197 198 6.603940 AATCACTAGCCCAAAAGCAAAATA 57.396 33.333 0.00 0.00 34.23 1.40
198 199 5.385509 TCACTAGCCCAAAAGCAAAATAC 57.614 39.130 0.00 0.00 34.23 1.89
199 200 5.076873 TCACTAGCCCAAAAGCAAAATACT 58.923 37.500 0.00 0.00 34.23 2.12
200 201 5.538433 TCACTAGCCCAAAAGCAAAATACTT 59.462 36.000 0.00 0.00 34.23 2.24
201 202 6.717540 TCACTAGCCCAAAAGCAAAATACTTA 59.282 34.615 0.00 0.00 34.23 2.24
202 203 6.806739 CACTAGCCCAAAAGCAAAATACTTAC 59.193 38.462 0.00 0.00 34.23 2.34
203 204 5.799827 AGCCCAAAAGCAAAATACTTACA 57.200 34.783 0.00 0.00 34.23 2.41
204 205 6.358974 AGCCCAAAAGCAAAATACTTACAT 57.641 33.333 0.00 0.00 34.23 2.29
205 206 6.398095 AGCCCAAAAGCAAAATACTTACATC 58.602 36.000 0.00 0.00 34.23 3.06
206 207 5.580691 GCCCAAAAGCAAAATACTTACATCC 59.419 40.000 0.00 0.00 0.00 3.51
207 208 6.696411 CCCAAAAGCAAAATACTTACATCCA 58.304 36.000 0.00 0.00 0.00 3.41
208 209 7.158021 CCCAAAAGCAAAATACTTACATCCAA 58.842 34.615 0.00 0.00 0.00 3.53
209 210 7.331687 CCCAAAAGCAAAATACTTACATCCAAG 59.668 37.037 0.00 0.00 0.00 3.61
210 211 8.087750 CCAAAAGCAAAATACTTACATCCAAGA 58.912 33.333 0.00 0.00 0.00 3.02
211 212 9.643693 CAAAAGCAAAATACTTACATCCAAGAT 57.356 29.630 0.00 0.00 0.00 2.40
212 213 9.860898 AAAAGCAAAATACTTACATCCAAGATC 57.139 29.630 0.00 0.00 0.00 2.75
213 214 8.579850 AAGCAAAATACTTACATCCAAGATCA 57.420 30.769 0.00 0.00 0.00 2.92
222 223 7.234355 ACTTACATCCAAGATCAAAAACTCCT 58.766 34.615 0.00 0.00 0.00 3.69
224 225 6.983906 ACATCCAAGATCAAAAACTCCTTT 57.016 33.333 0.00 0.00 0.00 3.11
227 228 6.639632 TCCAAGATCAAAAACTCCTTTGAG 57.360 37.500 0.00 0.00 45.80 3.02
244 245 1.856265 GAGCTTGACGCCAACCCAAG 61.856 60.000 0.00 0.00 40.39 3.61
255 256 0.823460 CAACCCAAGTTGCTGTTGGT 59.177 50.000 20.41 10.50 46.43 3.67
259 260 1.206849 CCCAAGTTGCTGTTGGTTGTT 59.793 47.619 0.00 0.00 42.69 2.83
264 265 4.535526 AGTTGCTGTTGGTTGTTTCTTT 57.464 36.364 0.00 0.00 0.00 2.52
270 271 3.583806 TGTTGGTTGTTTCTTTGTGCAG 58.416 40.909 0.00 0.00 0.00 4.41
272 273 4.081752 TGTTGGTTGTTTCTTTGTGCAGAT 60.082 37.500 0.00 0.00 0.00 2.90
385 396 1.767759 AAGCAAATCGCATTAGGGCT 58.232 45.000 0.00 0.00 46.13 5.19
395 406 2.162681 GCATTAGGGCTGTCACAAACT 58.837 47.619 0.00 0.00 0.00 2.66
402 413 2.552743 GGGCTGTCACAAACTAACCTTC 59.447 50.000 0.00 0.00 0.00 3.46
409 420 3.118334 TCACAAACTAACCTTCCGTCCAA 60.118 43.478 0.00 0.00 0.00 3.53
436 447 6.094719 TGCAAATCAATCATGCAAAGTACTC 58.905 36.000 0.00 0.00 46.23 2.59
444 458 4.353777 TCATGCAAAGTACTCCTCCTAGT 58.646 43.478 0.00 0.00 0.00 2.57
455 469 3.633065 ACTCCTCCTAGTACAGCGAAATC 59.367 47.826 0.00 0.00 0.00 2.17
456 470 3.886505 CTCCTCCTAGTACAGCGAAATCT 59.113 47.826 0.00 0.00 0.00 2.40
457 471 5.045012 TCCTCCTAGTACAGCGAAATCTA 57.955 43.478 0.00 0.00 0.00 1.98
619 828 4.476410 CGAGTAGCTCGCACGGCA 62.476 66.667 5.60 0.00 46.75 5.69
620 829 2.881352 GAGTAGCTCGCACGGCAC 60.881 66.667 0.00 3.47 0.00 5.01
644 853 4.993945 CGCACGCACGCACAACTC 62.994 66.667 0.00 0.00 0.00 3.01
645 854 3.640000 GCACGCACGCACAACTCT 61.640 61.111 0.00 0.00 0.00 3.24
646 855 3.014036 CACGCACGCACAACTCTT 58.986 55.556 0.00 0.00 0.00 2.85
647 856 1.368019 CACGCACGCACAACTCTTG 60.368 57.895 0.00 0.00 0.00 3.02
648 857 2.249309 CGCACGCACAACTCTTGG 59.751 61.111 0.00 0.00 34.12 3.61
649 858 2.243957 CGCACGCACAACTCTTGGA 61.244 57.895 0.00 0.00 34.12 3.53
650 859 1.279840 GCACGCACAACTCTTGGAC 59.720 57.895 0.00 0.00 34.12 4.02
651 860 1.564622 CACGCACAACTCTTGGACG 59.435 57.895 0.00 0.00 38.51 4.79
652 861 0.874175 CACGCACAACTCTTGGACGA 60.874 55.000 0.00 0.00 36.82 4.20
653 862 0.874607 ACGCACAACTCTTGGACGAC 60.875 55.000 0.00 0.00 36.82 4.34
654 863 0.597637 CGCACAACTCTTGGACGACT 60.598 55.000 0.00 0.00 35.84 4.18
655 864 0.861837 GCACAACTCTTGGACGACTG 59.138 55.000 0.00 0.00 34.12 3.51
659 868 1.040646 AACTCTTGGACGACTGCTGA 58.959 50.000 0.00 0.00 0.00 4.26
693 902 4.091939 CCGTTCCCGTTCCCCTCC 62.092 72.222 0.00 0.00 0.00 4.30
694 903 4.091939 CGTTCCCGTTCCCCTCCC 62.092 72.222 0.00 0.00 0.00 4.30
695 904 2.609921 GTTCCCGTTCCCCTCCCT 60.610 66.667 0.00 0.00 0.00 4.20
696 905 2.285144 TTCCCGTTCCCCTCCCTC 60.285 66.667 0.00 0.00 0.00 4.30
712 921 2.687566 TCTCCCCCGCTTCCTTCC 60.688 66.667 0.00 0.00 0.00 3.46
795 1004 1.660917 CGCGATACCTTCCCCTCTC 59.339 63.158 0.00 0.00 0.00 3.20
796 1005 1.807495 CGCGATACCTTCCCCTCTCC 61.807 65.000 0.00 0.00 0.00 3.71
797 1006 0.470268 GCGATACCTTCCCCTCTCCT 60.470 60.000 0.00 0.00 0.00 3.69
798 1007 1.623163 CGATACCTTCCCCTCTCCTC 58.377 60.000 0.00 0.00 0.00 3.71
799 1008 1.146152 CGATACCTTCCCCTCTCCTCT 59.854 57.143 0.00 0.00 0.00 3.69
805 1014 0.855855 TTCCCCTCTCCTCTCCTCCA 60.856 60.000 0.00 0.00 0.00 3.86
880 1106 2.597510 AAAGCCAAGCCGTCCCAC 60.598 61.111 0.00 0.00 0.00 4.61
881 1107 4.660938 AAGCCAAGCCGTCCCACC 62.661 66.667 0.00 0.00 0.00 4.61
886 1112 3.552384 AAGCCGTCCCACCGACAA 61.552 61.111 0.00 0.00 42.07 3.18
887 1113 3.530910 AAGCCGTCCCACCGACAAG 62.531 63.158 0.00 0.00 42.07 3.16
1439 1702 0.888619 TTGAGCTCCGATTGAGACGT 59.111 50.000 12.15 0.00 44.42 4.34
1441 1704 1.135373 TGAGCTCCGATTGAGACGTTC 60.135 52.381 12.15 0.00 44.42 3.95
1443 1706 1.140407 GCTCCGATTGAGACGTTCCG 61.140 60.000 0.00 0.00 44.42 4.30
1485 1749 6.832900 TGTTCCACCAATATCAATGATTAGCA 59.167 34.615 0.00 0.00 0.00 3.49
1486 1750 7.506599 TGTTCCACCAATATCAATGATTAGCAT 59.493 33.333 0.00 0.00 39.43 3.79
1525 1789 1.596477 GATGGGCTGATGGCTCGAC 60.596 63.158 0.00 0.00 46.29 4.20
1577 1841 5.124297 CACCTTCAATGTCACATTCAGCATA 59.876 40.000 0.00 0.00 0.00 3.14
1585 1849 5.737860 TGTCACATTCAGCATAGATGTCTT 58.262 37.500 0.00 0.00 0.00 3.01
1596 1860 8.380867 TCAGCATAGATGTCTTGGAAATATGAT 58.619 33.333 0.00 0.00 0.00 2.45
1660 1924 3.005367 AGTTATTTGTTGCACCGGGAAAG 59.995 43.478 6.32 0.00 0.00 2.62
1667 1931 0.958382 TGCACCGGGAAAGTGTATGC 60.958 55.000 6.32 3.29 37.56 3.14
1694 1958 3.142174 ACTCCTTCTGTTAGCTTGTTGC 58.858 45.455 0.00 0.00 43.29 4.17
1704 1968 2.793278 AGCTTGTTGCCCTTTAAACG 57.207 45.000 0.00 0.00 44.23 3.60
1706 1970 2.429250 AGCTTGTTGCCCTTTAAACGTT 59.571 40.909 0.00 0.00 44.23 3.99
1779 2044 6.581171 AGCTTGAATCCCTTAAACTTTCAG 57.419 37.500 0.00 0.00 0.00 3.02
1785 2050 8.934023 TGAATCCCTTAAACTTTCAGTGTATT 57.066 30.769 0.00 0.00 0.00 1.89
1896 2161 2.881513 TGTGGTGTATCGTGCAAATGTT 59.118 40.909 0.00 0.00 0.00 2.71
1906 2171 2.034675 CGTGCAAATGTTGTGCTGAAAC 60.035 45.455 0.00 0.00 42.69 2.78
1914 2179 2.159393 TGTTGTGCTGAAACTGTTGCTC 60.159 45.455 0.00 0.00 0.00 4.26
1918 2183 0.039708 GCTGAAACTGTTGCTCCTGC 60.040 55.000 0.00 0.53 40.20 4.85
1938 2203 3.444742 TGCCATTCCAGCTACATTTCAAG 59.555 43.478 0.00 0.00 0.00 3.02
2080 2347 4.080582 TGGATAGATGTTTGGTTCCGACAT 60.081 41.667 9.35 9.35 36.76 3.06
2081 2348 4.511826 GGATAGATGTTTGGTTCCGACATC 59.488 45.833 20.45 20.45 46.21 3.06
2297 2579 5.805994 AGTAGTTCTGATACTTTTAGCACGC 59.194 40.000 0.00 0.00 29.01 5.34
2380 2662 3.131396 ACTCGGATGTGTTCTTTGTGTC 58.869 45.455 0.00 0.00 0.00 3.67
2473 2755 3.476552 TCTTGCTACTGAACCAGGTTTG 58.523 45.455 6.21 5.54 35.51 2.93
2558 2840 3.830755 AGTATGTTACTCCCACGACACTT 59.169 43.478 0.00 0.00 32.47 3.16
2559 2841 5.012239 AGTATGTTACTCCCACGACACTTA 58.988 41.667 0.00 0.00 32.47 2.24
2560 2842 5.655532 AGTATGTTACTCCCACGACACTTAT 59.344 40.000 0.00 0.00 32.47 1.73
2561 2843 4.877378 TGTTACTCCCACGACACTTATT 57.123 40.909 0.00 0.00 0.00 1.40
2562 2844 5.217978 TGTTACTCCCACGACACTTATTT 57.782 39.130 0.00 0.00 0.00 1.40
2564 2846 6.056884 TGTTACTCCCACGACACTTATTTTT 58.943 36.000 0.00 0.00 0.00 1.94
2575 2857 4.270008 ACACTTATTTTTGATCGGAGGGG 58.730 43.478 0.00 0.00 0.00 4.79
2762 3044 2.333926 TCTGTCGGTATGCTTTTCACG 58.666 47.619 0.00 0.00 0.00 4.35
2862 3144 2.742053 TGTTTCTGTCTATTCCGCTTGC 59.258 45.455 0.00 0.00 0.00 4.01
3014 3296 7.504403 AGATGAACTATCTGAACAAGGTATGG 58.496 38.462 0.00 0.00 44.46 2.74
3030 3312 5.984725 AGGTATGGTCGATGTTTATGTTCA 58.015 37.500 0.00 0.00 0.00 3.18
3043 3325 7.225784 TGTTTATGTTCATTGGCAGTTATGT 57.774 32.000 0.00 0.00 0.00 2.29
3079 3361 8.480643 AGAATAATTTCCATACGTAGCATAGC 57.519 34.615 0.08 0.00 31.84 2.97
3080 3362 8.094548 AGAATAATTTCCATACGTAGCATAGCA 58.905 33.333 0.08 0.00 31.84 3.49
3210 3504 6.631238 CAGTTGTTTCGCCCATTTATTATACG 59.369 38.462 0.00 0.00 0.00 3.06
3332 3626 8.046294 TGCTTTACTTTCTGTCTTAAACAACA 57.954 30.769 0.00 0.00 37.45 3.33
3420 3814 9.640963 ATGTCAATCTGTACTTTAGTGAGTTAC 57.359 33.333 0.00 0.00 0.00 2.50
3421 3815 8.857098 TGTCAATCTGTACTTTAGTGAGTTACT 58.143 33.333 0.00 0.00 43.56 2.24
3422 3816 9.344309 GTCAATCTGTACTTTAGTGAGTTACTC 57.656 37.037 5.27 5.27 40.89 2.59
3423 3817 8.521176 TCAATCTGTACTTTAGTGAGTTACTCC 58.479 37.037 10.10 1.53 40.89 3.85
3424 3818 6.830873 TCTGTACTTTAGTGAGTTACTCCC 57.169 41.667 10.10 0.00 40.89 4.30
3425 3819 6.550163 TCTGTACTTTAGTGAGTTACTCCCT 58.450 40.000 10.10 6.24 40.89 4.20
3426 3820 6.658391 TCTGTACTTTAGTGAGTTACTCCCTC 59.342 42.308 10.10 1.01 40.89 4.30
3427 3821 6.550163 TGTACTTTAGTGAGTTACTCCCTCT 58.450 40.000 10.10 8.19 40.89 3.69
3428 3822 5.986501 ACTTTAGTGAGTTACTCCCTCTG 57.013 43.478 10.10 0.85 40.89 3.35
3429 3823 5.395611 ACTTTAGTGAGTTACTCCCTCTGT 58.604 41.667 10.10 1.43 40.89 3.41
3430 3824 5.477637 ACTTTAGTGAGTTACTCCCTCTGTC 59.522 44.000 10.10 0.00 40.89 3.51
3431 3825 2.810164 AGTGAGTTACTCCCTCTGTCC 58.190 52.381 10.10 0.00 33.17 4.02
3432 3826 1.826096 GTGAGTTACTCCCTCTGTCCC 59.174 57.143 10.10 0.00 0.00 4.46
3433 3827 1.431633 TGAGTTACTCCCTCTGTCCCA 59.568 52.381 10.10 0.00 0.00 4.37
3434 3828 2.158219 TGAGTTACTCCCTCTGTCCCAA 60.158 50.000 10.10 0.00 0.00 4.12
3435 3829 2.904434 GAGTTACTCCCTCTGTCCCAAA 59.096 50.000 0.00 0.00 0.00 3.28
3436 3830 3.323775 AGTTACTCCCTCTGTCCCAAAA 58.676 45.455 0.00 0.00 0.00 2.44
3437 3831 3.916989 AGTTACTCCCTCTGTCCCAAAAT 59.083 43.478 0.00 0.00 0.00 1.82
3438 3832 5.098663 AGTTACTCCCTCTGTCCCAAAATA 58.901 41.667 0.00 0.00 0.00 1.40
3439 3833 5.731678 AGTTACTCCCTCTGTCCCAAAATAT 59.268 40.000 0.00 0.00 0.00 1.28
3440 3834 6.906901 AGTTACTCCCTCTGTCCCAAAATATA 59.093 38.462 0.00 0.00 0.00 0.86
3441 3835 7.404980 AGTTACTCCCTCTGTCCCAAAATATAA 59.595 37.037 0.00 0.00 0.00 0.98
3442 3836 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
3443 3837 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
3444 3838 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
3445 3839 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
3446 3840 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
3447 3841 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
3448 3842 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
3449 3843 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
3450 3844 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
3451 3845 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
3493 3887 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
3494 3888 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
3495 3889 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
3496 3890 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
3497 3891 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
3498 3892 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
3499 3893 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
3505 3899 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3506 3900 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3507 3901 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3508 3902 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3509 3903 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3510 3904 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3511 3905 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3512 3906 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3513 3907 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3514 3908 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3515 3909 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3516 3910 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3517 3911 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3518 3912 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
3519 3913 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
3533 3927 4.951094 AGGGAGTAGTTTCTAGCACTAGTG 59.049 45.833 18.93 18.93 31.64 2.74
3554 3948 3.689161 TGTGCATTGAAGTAATTCCGAGG 59.311 43.478 0.00 0.00 0.00 4.63
3579 3973 4.603231 TCTTTGTACCACGTGTCAAAAC 57.397 40.909 21.68 11.67 31.07 2.43
3600 3994 6.949352 AACATTCTATCCATAACCTTGCAG 57.051 37.500 0.00 0.00 0.00 4.41
3601 3995 4.823989 ACATTCTATCCATAACCTTGCAGC 59.176 41.667 0.00 0.00 0.00 5.25
3602 3996 3.111853 TCTATCCATAACCTTGCAGCG 57.888 47.619 0.00 0.00 0.00 5.18
3603 3997 2.698274 TCTATCCATAACCTTGCAGCGA 59.302 45.455 0.00 0.00 0.00 4.93
3604 3998 1.668419 ATCCATAACCTTGCAGCGAC 58.332 50.000 0.00 0.00 0.00 5.19
3605 3999 0.323302 TCCATAACCTTGCAGCGACA 59.677 50.000 0.00 0.00 0.00 4.35
3606 4000 1.065491 TCCATAACCTTGCAGCGACAT 60.065 47.619 0.00 0.00 0.00 3.06
3607 4001 1.331756 CCATAACCTTGCAGCGACATC 59.668 52.381 0.00 0.00 0.00 3.06
3608 4002 1.331756 CATAACCTTGCAGCGACATCC 59.668 52.381 0.00 0.00 0.00 3.51
3609 4003 0.613260 TAACCTTGCAGCGACATCCT 59.387 50.000 0.00 0.00 0.00 3.24
3610 4004 0.613260 AACCTTGCAGCGACATCCTA 59.387 50.000 0.00 0.00 0.00 2.94
3611 4005 0.833287 ACCTTGCAGCGACATCCTAT 59.167 50.000 0.00 0.00 0.00 2.57
3612 4006 1.202580 ACCTTGCAGCGACATCCTATC 60.203 52.381 0.00 0.00 0.00 2.08
3613 4007 1.506493 CTTGCAGCGACATCCTATCC 58.494 55.000 0.00 0.00 0.00 2.59
3614 4008 0.249447 TTGCAGCGACATCCTATCCG 60.249 55.000 0.00 0.00 0.00 4.18
3615 4009 1.106944 TGCAGCGACATCCTATCCGA 61.107 55.000 0.00 0.00 0.00 4.55
3616 4010 0.387878 GCAGCGACATCCTATCCGAG 60.388 60.000 0.00 0.00 0.00 4.63
3618 4012 0.178987 AGCGACATCCTATCCGAGGT 60.179 55.000 0.00 0.00 46.76 3.85
3619 4013 1.073444 AGCGACATCCTATCCGAGGTA 59.927 52.381 0.00 0.00 46.76 3.08
3620 4014 2.093106 GCGACATCCTATCCGAGGTAT 58.907 52.381 0.00 0.00 46.76 2.73
3621 4015 2.492484 GCGACATCCTATCCGAGGTATT 59.508 50.000 0.00 0.00 46.76 1.89
3622 4016 3.427773 GCGACATCCTATCCGAGGTATTC 60.428 52.174 0.00 0.00 46.76 1.75
3623 4017 3.128938 CGACATCCTATCCGAGGTATTCC 59.871 52.174 0.00 0.00 46.76 3.01
3624 4018 3.090037 ACATCCTATCCGAGGTATTCCG 58.910 50.000 0.00 0.00 46.76 4.30
3625 4019 3.245158 ACATCCTATCCGAGGTATTCCGA 60.245 47.826 0.00 0.00 46.76 4.55
3626 4020 3.069079 TCCTATCCGAGGTATTCCGAG 57.931 52.381 0.00 0.00 46.76 4.63
3627 4021 2.641321 TCCTATCCGAGGTATTCCGAGA 59.359 50.000 0.00 0.00 46.76 4.04
3628 4022 3.266254 TCCTATCCGAGGTATTCCGAGAT 59.734 47.826 0.00 0.00 46.76 2.75
3668 4070 1.002468 CACTCAGGTTTTGGTCTTGCG 60.002 52.381 0.00 0.00 0.00 4.85
3708 4110 5.801947 GCCATCATTACAACAATCACTCAAC 59.198 40.000 0.00 0.00 0.00 3.18
3818 4223 5.958380 TGAACCAGATCCACTCATAGTAAGT 59.042 40.000 0.00 0.00 0.00 2.24
3838 4243 4.377897 AGTGTTAGACGGCCTATTATTGC 58.622 43.478 0.00 0.00 0.00 3.56
3924 4367 3.587061 TGTGAGGATGAGGTGGTTATGTT 59.413 43.478 0.00 0.00 0.00 2.71
3926 4369 5.104941 TGTGAGGATGAGGTGGTTATGTTAG 60.105 44.000 0.00 0.00 0.00 2.34
3929 4372 3.877508 GGATGAGGTGGTTATGTTAGCAC 59.122 47.826 0.00 0.00 43.84 4.40
3970 4413 4.990543 TGAATGTCTGACAACACGATTC 57.009 40.909 15.31 12.67 30.55 2.52
4305 4748 9.052759 TCTTCTTTTACTTGAAATGACACCTAC 57.947 33.333 0.00 0.00 32.50 3.18
4433 4876 2.030371 CTCTCAGGTCTGCTGCTGATA 58.970 52.381 12.42 0.00 0.00 2.15
4453 4896 0.461961 GGATTCCTCTCAGGTCACCG 59.538 60.000 0.00 0.00 36.53 4.94
4492 4935 4.803426 CTCAGGTCTGCCGCCGAC 62.803 72.222 6.39 6.39 40.50 4.79
4578 5021 1.109323 GGTTGCAGCTGGGTTCAAGT 61.109 55.000 17.12 0.00 0.00 3.16
4622 5065 1.548081 TGGTCAAATCATGGTGCCTG 58.452 50.000 0.00 0.00 0.00 4.85
4652 5100 2.059756 ACCTGGGAAGGGAAGAATCA 57.940 50.000 0.00 0.00 0.00 2.57
4821 5274 0.254747 TTAGAATGGCCAAGGACCCG 59.745 55.000 10.96 0.00 0.00 5.28
4855 5309 7.416817 ACATACCTTTTCTTTTTGCATTTTGC 58.583 30.769 0.00 0.00 45.29 3.68
4895 5360 0.946221 CCACAGAGGTCGTTGTCTGC 60.946 60.000 9.57 0.00 43.48 4.26
4904 5369 3.731136 GTTGTCTGCAACCGCTGA 58.269 55.556 0.00 0.00 46.81 4.26
4948 5413 6.480524 TCGTTCAGAAACATGACTAAATGG 57.519 37.500 0.00 0.00 34.93 3.16
4960 5425 7.318141 ACATGACTAAATGGAAGAGCAAAATG 58.682 34.615 0.00 0.00 31.46 2.32
4975 5532 4.177165 CAAAATGTGCCTAGCAATCACA 57.823 40.909 7.47 7.47 41.47 3.58
4977 5534 5.679382 GCAAAATGTGCCTAGCAATCACATA 60.679 40.000 14.27 0.00 46.92 2.29
4978 5535 5.762825 AAATGTGCCTAGCAATCACATAG 57.237 39.130 14.27 0.00 46.92 2.23
4980 5537 3.534554 TGTGCCTAGCAATCACATAGTG 58.465 45.455 0.00 0.00 41.47 2.74
4983 5540 3.682436 TGCCTAGCAATCACATAGTGTGG 60.682 47.826 9.92 0.00 41.39 4.17
5004 5561 0.103026 TAGAGCCGTACAGCTGCATG 59.897 55.000 15.27 6.37 45.15 4.06
5103 5688 3.117776 TCAGTATCTGACCTACCGGCTTA 60.118 47.826 0.00 0.00 35.39 3.09
5220 5805 7.847096 TCCATTATAAAACACTAGCTGTCAGA 58.153 34.615 3.32 0.00 30.29 3.27
5221 5806 8.486210 TCCATTATAAAACACTAGCTGTCAGAT 58.514 33.333 3.32 0.00 30.29 2.90
5222 5807 9.113838 CCATTATAAAACACTAGCTGTCAGATT 57.886 33.333 3.32 0.00 30.29 2.40
5223 5808 9.926751 CATTATAAAACACTAGCTGTCAGATTG 57.073 33.333 3.32 0.21 30.29 2.67
5224 5809 9.672673 ATTATAAAACACTAGCTGTCAGATTGT 57.327 29.630 3.32 0.97 30.29 2.71
5225 5810 5.931441 AAAACACTAGCTGTCAGATTGTC 57.069 39.130 3.32 0.00 30.29 3.18
5226 5811 4.607293 AACACTAGCTGTCAGATTGTCA 57.393 40.909 3.32 0.00 30.29 3.58
5227 5812 4.185467 ACACTAGCTGTCAGATTGTCAG 57.815 45.455 3.32 0.00 36.76 3.51
5236 5821 5.282055 TGTCAGATTGTCAGTCAACTCTT 57.718 39.130 0.00 0.00 38.97 2.85
5259 5844 0.898320 CTCAGTGACCTCCGAATGGT 59.102 55.000 0.00 0.00 41.07 3.55
5274 5859 2.959967 TGGTGACAATGTCCATGGC 58.040 52.632 11.24 2.72 37.44 4.40
5275 5860 0.405198 TGGTGACAATGTCCATGGCT 59.595 50.000 11.24 0.00 37.44 4.75
5278 5863 2.423538 GGTGACAATGTCCATGGCTTAC 59.576 50.000 11.24 0.14 0.00 2.34
5404 6025 1.626654 CGCCGGTAACACTCAGCTTG 61.627 60.000 1.90 0.00 0.00 4.01
5448 6069 2.827423 CATCCATGGAGCTCGCCT 59.173 61.111 21.33 0.00 0.00 5.52
5465 6086 1.810441 CTCGCTGCTCCTGCTTCTG 60.810 63.158 0.00 0.00 40.48 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.896320 GGTTTGGTACCATTGTTTATTCTTTT 57.104 30.769 17.17 0.00 46.92 2.27
15 16 7.383843 CAAAGATTTGTACAATGGTTTGGTACC 59.616 37.037 19.60 4.43 39.11 3.34
16 17 7.383843 CCAAAGATTTGTACAATGGTTTGGTAC 59.616 37.037 28.06 0.00 38.47 3.34
17 18 7.287927 TCCAAAGATTTGTACAATGGTTTGGTA 59.712 33.333 31.06 23.01 42.14 3.25
18 19 6.098982 TCCAAAGATTTGTACAATGGTTTGGT 59.901 34.615 31.06 9.35 42.14 3.67
19 20 6.520272 TCCAAAGATTTGTACAATGGTTTGG 58.480 36.000 29.22 29.22 42.63 3.28
20 21 8.430801 TTTCCAAAGATTTGTACAATGGTTTG 57.569 30.769 19.68 19.88 36.45 2.93
21 22 9.625747 ATTTTCCAAAGATTTGTACAATGGTTT 57.374 25.926 19.68 12.19 36.45 3.27
22 23 9.271828 GATTTTCCAAAGATTTGTACAATGGTT 57.728 29.630 19.68 7.71 36.45 3.67
23 24 8.428063 TGATTTTCCAAAGATTTGTACAATGGT 58.572 29.630 19.68 6.70 36.45 3.55
24 25 8.830201 TGATTTTCCAAAGATTTGTACAATGG 57.170 30.769 16.01 16.01 36.45 3.16
28 29 9.190858 CGATTTGATTTTCCAAAGATTTGTACA 57.809 29.630 4.71 0.00 39.13 2.90
29 30 8.647226 CCGATTTGATTTTCCAAAGATTTGTAC 58.353 33.333 4.71 0.00 39.13 2.90
30 31 7.330700 GCCGATTTGATTTTCCAAAGATTTGTA 59.669 33.333 4.71 0.00 39.13 2.41
31 32 6.147656 GCCGATTTGATTTTCCAAAGATTTGT 59.852 34.615 4.71 0.00 39.13 2.83
32 33 6.536688 GCCGATTTGATTTTCCAAAGATTTG 58.463 36.000 0.00 0.00 39.13 2.32
33 34 5.348451 CGCCGATTTGATTTTCCAAAGATTT 59.652 36.000 0.00 0.00 39.13 2.17
34 35 4.864247 CGCCGATTTGATTTTCCAAAGATT 59.136 37.500 0.00 0.00 39.13 2.40
35 36 4.157656 TCGCCGATTTGATTTTCCAAAGAT 59.842 37.500 0.00 0.00 39.13 2.40
36 37 3.504134 TCGCCGATTTGATTTTCCAAAGA 59.496 39.130 0.00 0.00 39.13 2.52
37 38 3.832276 TCGCCGATTTGATTTTCCAAAG 58.168 40.909 0.00 0.00 39.13 2.77
38 39 3.924918 TCGCCGATTTGATTTTCCAAA 57.075 38.095 0.00 0.00 39.93 3.28
39 40 3.254657 ACTTCGCCGATTTGATTTTCCAA 59.745 39.130 0.00 0.00 0.00 3.53
40 41 2.817258 ACTTCGCCGATTTGATTTTCCA 59.183 40.909 0.00 0.00 0.00 3.53
41 42 3.487563 ACTTCGCCGATTTGATTTTCC 57.512 42.857 0.00 0.00 0.00 3.13
42 43 5.628134 ACTAACTTCGCCGATTTGATTTTC 58.372 37.500 0.00 0.00 0.00 2.29
43 44 5.622770 ACTAACTTCGCCGATTTGATTTT 57.377 34.783 0.00 0.00 0.00 1.82
44 45 4.201685 CGACTAACTTCGCCGATTTGATTT 60.202 41.667 0.00 0.00 31.03 2.17
45 46 3.306166 CGACTAACTTCGCCGATTTGATT 59.694 43.478 0.00 0.00 31.03 2.57
46 47 2.858344 CGACTAACTTCGCCGATTTGAT 59.142 45.455 0.00 0.00 31.03 2.57
47 48 2.256174 CGACTAACTTCGCCGATTTGA 58.744 47.619 0.00 0.00 31.03 2.69
48 49 2.696076 CGACTAACTTCGCCGATTTG 57.304 50.000 0.00 0.00 31.03 2.32
56 57 1.324736 GCATCTTGGCGACTAACTTCG 59.675 52.381 0.00 0.00 42.15 3.79
57 58 2.346803 TGCATCTTGGCGACTAACTTC 58.653 47.619 0.00 0.00 36.28 3.01
58 59 2.472695 TGCATCTTGGCGACTAACTT 57.527 45.000 0.00 0.00 36.28 2.66
59 60 2.093500 TCATGCATCTTGGCGACTAACT 60.093 45.455 0.00 0.00 36.28 2.24
60 61 2.279741 TCATGCATCTTGGCGACTAAC 58.720 47.619 0.00 0.00 36.28 2.34
61 62 2.689553 TCATGCATCTTGGCGACTAA 57.310 45.000 0.00 0.00 36.28 2.24
62 63 2.486918 CATCATGCATCTTGGCGACTA 58.513 47.619 0.00 0.00 36.28 2.59
63 64 1.306148 CATCATGCATCTTGGCGACT 58.694 50.000 0.00 0.00 36.28 4.18
64 65 0.317603 GCATCATGCATCTTGGCGAC 60.318 55.000 4.20 0.00 44.26 5.19
65 66 1.778027 CGCATCATGCATCTTGGCGA 61.778 55.000 20.51 5.34 45.36 5.54
66 67 1.370051 CGCATCATGCATCTTGGCG 60.370 57.895 11.00 14.48 45.36 5.69
67 68 1.007734 CCGCATCATGCATCTTGGC 60.008 57.895 11.00 0.00 45.36 4.52
68 69 0.742505 AACCGCATCATGCATCTTGG 59.257 50.000 11.00 4.61 45.36 3.61
69 70 2.159352 TGAAACCGCATCATGCATCTTG 60.159 45.455 11.00 0.00 45.36 3.02
70 71 2.093890 TGAAACCGCATCATGCATCTT 58.906 42.857 11.00 0.00 45.36 2.40
71 72 1.753930 TGAAACCGCATCATGCATCT 58.246 45.000 11.00 0.00 45.36 2.90
72 73 2.565210 TTGAAACCGCATCATGCATC 57.435 45.000 11.00 2.73 45.36 3.91
73 74 2.417651 CCTTTGAAACCGCATCATGCAT 60.418 45.455 11.00 0.00 45.36 3.96
74 75 1.067706 CCTTTGAAACCGCATCATGCA 60.068 47.619 11.00 0.00 45.36 3.96
75 76 1.202114 TCCTTTGAAACCGCATCATGC 59.798 47.619 0.00 0.00 40.69 4.06
76 77 2.733227 GCTCCTTTGAAACCGCATCATG 60.733 50.000 0.00 0.00 0.00 3.07
77 78 1.474077 GCTCCTTTGAAACCGCATCAT 59.526 47.619 0.00 0.00 0.00 2.45
78 79 0.881118 GCTCCTTTGAAACCGCATCA 59.119 50.000 0.00 0.00 0.00 3.07
79 80 0.881118 TGCTCCTTTGAAACCGCATC 59.119 50.000 0.00 0.00 0.00 3.91
80 81 1.000274 GTTGCTCCTTTGAAACCGCAT 60.000 47.619 0.00 0.00 0.00 4.73
81 82 0.383949 GTTGCTCCTTTGAAACCGCA 59.616 50.000 0.00 0.00 0.00 5.69
82 83 0.383949 TGTTGCTCCTTTGAAACCGC 59.616 50.000 0.00 0.00 0.00 5.68
83 84 1.600413 GCTGTTGCTCCTTTGAAACCG 60.600 52.381 0.00 0.00 36.03 4.44
84 85 1.408702 TGCTGTTGCTCCTTTGAAACC 59.591 47.619 0.00 0.00 40.48 3.27
85 86 2.869233 TGCTGTTGCTCCTTTGAAAC 57.131 45.000 0.00 0.00 40.48 2.78
86 87 2.481795 GCTTGCTGTTGCTCCTTTGAAA 60.482 45.455 0.00 0.00 40.48 2.69
87 88 1.067516 GCTTGCTGTTGCTCCTTTGAA 59.932 47.619 0.00 0.00 40.48 2.69
88 89 0.670162 GCTTGCTGTTGCTCCTTTGA 59.330 50.000 0.00 0.00 40.48 2.69
89 90 0.662374 CGCTTGCTGTTGCTCCTTTG 60.662 55.000 0.00 0.00 40.48 2.77
90 91 1.103398 ACGCTTGCTGTTGCTCCTTT 61.103 50.000 0.00 0.00 40.48 3.11
91 92 1.526917 ACGCTTGCTGTTGCTCCTT 60.527 52.632 0.00 0.00 40.48 3.36
92 93 2.111878 ACGCTTGCTGTTGCTCCT 59.888 55.556 0.00 0.00 40.48 3.69
93 94 2.253452 CACGCTTGCTGTTGCTCC 59.747 61.111 0.00 0.00 40.48 4.70
94 95 2.428071 GCACGCTTGCTGTTGCTC 60.428 61.111 8.12 0.00 46.17 4.26
103 104 0.661187 AAAATGTCGCAGCACGCTTG 60.661 50.000 0.00 0.00 43.23 4.01
104 105 0.871722 TAAAATGTCGCAGCACGCTT 59.128 45.000 0.00 0.00 43.23 4.68
105 106 1.086696 ATAAAATGTCGCAGCACGCT 58.913 45.000 0.00 0.00 43.23 5.07
106 107 1.578915 CAATAAAATGTCGCAGCACGC 59.421 47.619 0.00 0.00 43.23 5.34
107 108 2.159585 TCCAATAAAATGTCGCAGCACG 60.160 45.455 0.00 0.00 45.62 5.34
108 109 3.171277 GTCCAATAAAATGTCGCAGCAC 58.829 45.455 0.00 0.00 0.00 4.40
109 110 2.159585 CGTCCAATAAAATGTCGCAGCA 60.160 45.455 0.00 0.00 0.00 4.41
110 111 2.440501 CGTCCAATAAAATGTCGCAGC 58.559 47.619 0.00 0.00 0.00 5.25
111 112 2.159585 TGCGTCCAATAAAATGTCGCAG 60.160 45.455 5.29 0.00 42.27 5.18
112 113 1.807142 TGCGTCCAATAAAATGTCGCA 59.193 42.857 5.29 5.29 43.64 5.10
113 114 2.535934 TGCGTCCAATAAAATGTCGC 57.464 45.000 0.00 0.00 39.96 5.19
114 115 4.211389 GCTATGCGTCCAATAAAATGTCG 58.789 43.478 0.00 0.00 0.00 4.35
115 116 5.168526 TGCTATGCGTCCAATAAAATGTC 57.831 39.130 0.00 0.00 0.00 3.06
116 117 5.772825 ATGCTATGCGTCCAATAAAATGT 57.227 34.783 0.00 0.00 0.00 2.71
117 118 7.132694 TCTATGCTATGCGTCCAATAAAATG 57.867 36.000 0.00 0.00 0.00 2.32
118 119 7.661437 TCTTCTATGCTATGCGTCCAATAAAAT 59.339 33.333 0.00 0.00 0.00 1.82
119 120 6.989759 TCTTCTATGCTATGCGTCCAATAAAA 59.010 34.615 0.00 0.00 0.00 1.52
120 121 6.521162 TCTTCTATGCTATGCGTCCAATAAA 58.479 36.000 0.00 0.00 0.00 1.40
121 122 6.096673 TCTTCTATGCTATGCGTCCAATAA 57.903 37.500 0.00 0.00 0.00 1.40
122 123 5.722021 TCTTCTATGCTATGCGTCCAATA 57.278 39.130 0.00 0.00 0.00 1.90
123 124 4.607293 TCTTCTATGCTATGCGTCCAAT 57.393 40.909 0.00 0.00 0.00 3.16
124 125 4.099419 TCTTCTTCTATGCTATGCGTCCAA 59.901 41.667 0.00 0.00 0.00 3.53
125 126 3.636764 TCTTCTTCTATGCTATGCGTCCA 59.363 43.478 0.00 0.00 0.00 4.02
126 127 3.984633 GTCTTCTTCTATGCTATGCGTCC 59.015 47.826 0.00 0.00 0.00 4.79
127 128 4.611943 TGTCTTCTTCTATGCTATGCGTC 58.388 43.478 0.00 0.00 0.00 5.19
128 129 4.098654 ACTGTCTTCTTCTATGCTATGCGT 59.901 41.667 0.00 0.00 0.00 5.24
129 130 4.443725 CACTGTCTTCTTCTATGCTATGCG 59.556 45.833 0.00 0.00 0.00 4.73
130 131 4.749099 CCACTGTCTTCTTCTATGCTATGC 59.251 45.833 0.00 0.00 0.00 3.14
131 132 6.154203 TCCACTGTCTTCTTCTATGCTATG 57.846 41.667 0.00 0.00 0.00 2.23
132 133 6.155221 TGTTCCACTGTCTTCTTCTATGCTAT 59.845 38.462 0.00 0.00 0.00 2.97
133 134 5.480422 TGTTCCACTGTCTTCTTCTATGCTA 59.520 40.000 0.00 0.00 0.00 3.49
134 135 4.284490 TGTTCCACTGTCTTCTTCTATGCT 59.716 41.667 0.00 0.00 0.00 3.79
135 136 4.390297 GTGTTCCACTGTCTTCTTCTATGC 59.610 45.833 0.00 0.00 0.00 3.14
136 137 5.788450 AGTGTTCCACTGTCTTCTTCTATG 58.212 41.667 0.00 0.00 43.63 2.23
137 138 6.722129 ACTAGTGTTCCACTGTCTTCTTCTAT 59.278 38.462 7.13 0.00 45.01 1.98
138 139 6.069331 ACTAGTGTTCCACTGTCTTCTTCTA 58.931 40.000 7.13 0.00 45.01 2.10
139 140 4.896482 ACTAGTGTTCCACTGTCTTCTTCT 59.104 41.667 7.13 0.00 45.01 2.85
140 141 5.010213 AGACTAGTGTTCCACTGTCTTCTTC 59.990 44.000 0.00 2.80 45.01 2.87
141 142 4.896482 AGACTAGTGTTCCACTGTCTTCTT 59.104 41.667 0.00 3.86 45.01 2.52
142 143 4.475345 AGACTAGTGTTCCACTGTCTTCT 58.525 43.478 0.00 7.71 45.01 2.85
143 144 4.857509 AGACTAGTGTTCCACTGTCTTC 57.142 45.455 0.00 6.19 45.01 2.87
145 146 6.726490 TTAAAGACTAGTGTTCCACTGTCT 57.274 37.500 5.63 16.61 45.01 3.41
146 147 7.208080 TCTTTAAAGACTAGTGTTCCACTGTC 58.792 38.462 13.99 11.36 45.01 3.51
147 148 7.120923 TCTTTAAAGACTAGTGTTCCACTGT 57.879 36.000 13.99 3.69 45.01 3.55
148 149 8.433421 TTTCTTTAAAGACTAGTGTTCCACTG 57.567 34.615 17.51 0.76 38.86 3.66
149 150 9.457436 TTTTTCTTTAAAGACTAGTGTTCCACT 57.543 29.630 17.51 2.09 40.41 4.00
159 160 9.227777 GGGCTAGTGATTTTTCTTTAAAGACTA 57.772 33.333 17.51 12.50 34.13 2.59
160 161 7.724061 TGGGCTAGTGATTTTTCTTTAAAGACT 59.276 33.333 17.51 12.05 34.13 3.24
161 162 7.882179 TGGGCTAGTGATTTTTCTTTAAAGAC 58.118 34.615 17.51 6.62 34.13 3.01
162 163 8.472007 TTGGGCTAGTGATTTTTCTTTAAAGA 57.528 30.769 13.99 13.99 0.00 2.52
163 164 9.541143 TTTTGGGCTAGTGATTTTTCTTTAAAG 57.459 29.630 9.04 9.04 0.00 1.85
164 165 9.541143 CTTTTGGGCTAGTGATTTTTCTTTAAA 57.459 29.630 0.00 0.00 0.00 1.52
165 166 7.655732 GCTTTTGGGCTAGTGATTTTTCTTTAA 59.344 33.333 0.00 0.00 0.00 1.52
166 167 7.151976 GCTTTTGGGCTAGTGATTTTTCTTTA 58.848 34.615 0.00 0.00 0.00 1.85
167 168 5.991606 GCTTTTGGGCTAGTGATTTTTCTTT 59.008 36.000 0.00 0.00 0.00 2.52
168 169 5.070313 TGCTTTTGGGCTAGTGATTTTTCTT 59.930 36.000 0.00 0.00 0.00 2.52
169 170 4.588528 TGCTTTTGGGCTAGTGATTTTTCT 59.411 37.500 0.00 0.00 0.00 2.52
170 171 4.881920 TGCTTTTGGGCTAGTGATTTTTC 58.118 39.130 0.00 0.00 0.00 2.29
171 172 4.953940 TGCTTTTGGGCTAGTGATTTTT 57.046 36.364 0.00 0.00 0.00 1.94
172 173 4.953940 TTGCTTTTGGGCTAGTGATTTT 57.046 36.364 0.00 0.00 0.00 1.82
173 174 4.953940 TTTGCTTTTGGGCTAGTGATTT 57.046 36.364 0.00 0.00 0.00 2.17
174 175 4.953940 TTTTGCTTTTGGGCTAGTGATT 57.046 36.364 0.00 0.00 0.00 2.57
175 176 5.716703 AGTATTTTGCTTTTGGGCTAGTGAT 59.283 36.000 0.00 0.00 0.00 3.06
176 177 5.076873 AGTATTTTGCTTTTGGGCTAGTGA 58.923 37.500 0.00 0.00 0.00 3.41
177 178 5.391312 AGTATTTTGCTTTTGGGCTAGTG 57.609 39.130 0.00 0.00 0.00 2.74
178 179 6.492087 TGTAAGTATTTTGCTTTTGGGCTAGT 59.508 34.615 0.00 0.00 0.00 2.57
179 180 6.919721 TGTAAGTATTTTGCTTTTGGGCTAG 58.080 36.000 0.00 0.00 0.00 3.42
180 181 6.902771 TGTAAGTATTTTGCTTTTGGGCTA 57.097 33.333 0.00 0.00 0.00 3.93
181 182 5.799827 TGTAAGTATTTTGCTTTTGGGCT 57.200 34.783 0.00 0.00 0.00 5.19
182 183 5.580691 GGATGTAAGTATTTTGCTTTTGGGC 59.419 40.000 0.00 0.00 0.00 5.36
183 184 6.696411 TGGATGTAAGTATTTTGCTTTTGGG 58.304 36.000 0.00 0.00 0.00 4.12
184 185 8.087750 TCTTGGATGTAAGTATTTTGCTTTTGG 58.912 33.333 0.00 0.00 0.00 3.28
185 186 9.643693 ATCTTGGATGTAAGTATTTTGCTTTTG 57.356 29.630 0.00 0.00 0.00 2.44
186 187 9.860898 GATCTTGGATGTAAGTATTTTGCTTTT 57.139 29.630 0.00 0.00 0.00 2.27
187 188 9.023962 TGATCTTGGATGTAAGTATTTTGCTTT 57.976 29.630 0.00 0.00 0.00 3.51
188 189 8.579850 TGATCTTGGATGTAAGTATTTTGCTT 57.420 30.769 0.00 0.00 0.00 3.91
189 190 8.579850 TTGATCTTGGATGTAAGTATTTTGCT 57.420 30.769 0.00 0.00 0.00 3.91
190 191 9.638239 TTTTGATCTTGGATGTAAGTATTTTGC 57.362 29.630 0.00 0.00 0.00 3.68
195 196 9.178758 GGAGTTTTTGATCTTGGATGTAAGTAT 57.821 33.333 0.00 0.00 0.00 2.12
196 197 8.383175 AGGAGTTTTTGATCTTGGATGTAAGTA 58.617 33.333 0.00 0.00 0.00 2.24
197 198 7.234355 AGGAGTTTTTGATCTTGGATGTAAGT 58.766 34.615 0.00 0.00 0.00 2.24
198 199 7.693969 AGGAGTTTTTGATCTTGGATGTAAG 57.306 36.000 0.00 0.00 0.00 2.34
199 200 8.359642 CAAAGGAGTTTTTGATCTTGGATGTAA 58.640 33.333 0.00 0.00 39.79 2.41
200 201 7.723616 TCAAAGGAGTTTTTGATCTTGGATGTA 59.276 33.333 0.00 0.00 40.95 2.29
201 202 6.550854 TCAAAGGAGTTTTTGATCTTGGATGT 59.449 34.615 0.00 0.00 40.95 3.06
202 203 6.985117 TCAAAGGAGTTTTTGATCTTGGATG 58.015 36.000 0.00 0.00 40.95 3.51
203 204 6.294955 GCTCAAAGGAGTTTTTGATCTTGGAT 60.295 38.462 2.09 0.00 43.80 3.41
204 205 5.010012 GCTCAAAGGAGTTTTTGATCTTGGA 59.990 40.000 2.09 0.00 43.80 3.53
205 206 5.010415 AGCTCAAAGGAGTTTTTGATCTTGG 59.990 40.000 2.09 0.00 43.80 3.61
206 207 6.081872 AGCTCAAAGGAGTTTTTGATCTTG 57.918 37.500 2.09 0.00 43.80 3.02
207 208 6.322201 TCAAGCTCAAAGGAGTTTTTGATCTT 59.678 34.615 10.20 10.20 46.32 2.40
208 209 5.829924 TCAAGCTCAAAGGAGTTTTTGATCT 59.170 36.000 2.09 1.24 41.15 2.75
209 210 5.917447 GTCAAGCTCAAAGGAGTTTTTGATC 59.083 40.000 2.09 0.00 41.15 2.92
210 211 5.506317 CGTCAAGCTCAAAGGAGTTTTTGAT 60.506 40.000 2.09 0.00 41.15 2.57
211 212 4.201910 CGTCAAGCTCAAAGGAGTTTTTGA 60.202 41.667 0.00 1.76 41.15 2.69
212 213 4.037690 CGTCAAGCTCAAAGGAGTTTTTG 58.962 43.478 0.00 0.00 41.15 2.44
213 214 3.489229 GCGTCAAGCTCAAAGGAGTTTTT 60.489 43.478 0.00 0.00 41.15 1.94
222 223 1.452145 GGGTTGGCGTCAAGCTCAAA 61.452 55.000 28.64 0.00 46.98 2.69
224 225 2.281484 GGGTTGGCGTCAAGCTCA 60.281 61.111 28.64 0.00 46.98 4.26
227 228 3.859409 CAACTTGGGTTGGCGTCAAGC 62.859 57.143 23.05 23.05 46.37 4.01
230 231 3.834726 CAACTTGGGTTGGCGTCA 58.165 55.556 0.00 0.00 46.37 4.35
244 245 3.993736 ACAAAGAAACAACCAACAGCAAC 59.006 39.130 0.00 0.00 0.00 4.17
255 256 5.741510 CGTGTTTATCTGCACAAAGAAACAA 59.258 36.000 11.38 0.00 31.84 2.83
259 260 4.334203 ACACGTGTTTATCTGCACAAAGAA 59.666 37.500 17.22 0.00 35.51 2.52
264 265 2.799978 CTGACACGTGTTTATCTGCACA 59.200 45.455 24.26 11.46 35.51 4.57
270 271 7.060600 TGATTTGATCTGACACGTGTTTATC 57.939 36.000 24.26 22.87 0.00 1.75
272 273 6.704050 TCTTGATTTGATCTGACACGTGTTTA 59.296 34.615 24.26 14.09 0.00 2.01
385 396 3.460103 GACGGAAGGTTAGTTTGTGACA 58.540 45.455 0.00 0.00 0.00 3.58
395 406 1.072489 TGCACATTGGACGGAAGGTTA 59.928 47.619 0.00 0.00 0.00 2.85
402 413 2.721274 TTGATTTGCACATTGGACGG 57.279 45.000 0.00 0.00 0.00 4.79
409 420 5.242434 ACTTTGCATGATTGATTTGCACAT 58.758 33.333 0.00 0.00 45.35 3.21
436 447 4.023021 GGTAGATTTCGCTGTACTAGGAGG 60.023 50.000 0.00 0.00 0.00 4.30
444 458 1.064505 CGGACGGTAGATTTCGCTGTA 59.935 52.381 0.00 0.00 0.00 2.74
627 836 4.993945 GAGTTGTGCGTGCGTGCG 62.994 66.667 0.00 0.00 37.81 5.34
629 838 1.368019 CAAGAGTTGTGCGTGCGTG 60.368 57.895 0.00 0.00 0.00 5.34
630 839 2.534019 CCAAGAGTTGTGCGTGCGT 61.534 57.895 0.00 0.00 0.00 5.24
631 840 2.243957 TCCAAGAGTTGTGCGTGCG 61.244 57.895 0.00 0.00 0.00 5.34
632 841 1.279840 GTCCAAGAGTTGTGCGTGC 59.720 57.895 0.00 0.00 0.00 5.34
633 842 0.874175 TCGTCCAAGAGTTGTGCGTG 60.874 55.000 0.00 0.00 0.00 5.34
634 843 0.874607 GTCGTCCAAGAGTTGTGCGT 60.875 55.000 0.00 0.00 0.00 5.24
635 844 0.597637 AGTCGTCCAAGAGTTGTGCG 60.598 55.000 0.00 0.00 0.00 5.34
636 845 0.861837 CAGTCGTCCAAGAGTTGTGC 59.138 55.000 0.00 0.00 0.00 4.57
637 846 0.861837 GCAGTCGTCCAAGAGTTGTG 59.138 55.000 0.00 0.00 0.00 3.33
638 847 0.753262 AGCAGTCGTCCAAGAGTTGT 59.247 50.000 0.00 0.00 0.00 3.32
639 848 1.143305 CAGCAGTCGTCCAAGAGTTG 58.857 55.000 0.00 0.00 0.00 3.16
640 849 1.040646 TCAGCAGTCGTCCAAGAGTT 58.959 50.000 0.00 0.00 0.00 3.01
641 850 0.315568 GTCAGCAGTCGTCCAAGAGT 59.684 55.000 0.00 0.00 0.00 3.24
642 851 0.600557 AGTCAGCAGTCGTCCAAGAG 59.399 55.000 0.00 0.00 0.00 2.85
643 852 0.315251 CAGTCAGCAGTCGTCCAAGA 59.685 55.000 0.00 0.00 0.00 3.02
644 853 0.315251 TCAGTCAGCAGTCGTCCAAG 59.685 55.000 0.00 0.00 0.00 3.61
645 854 0.032130 GTCAGTCAGCAGTCGTCCAA 59.968 55.000 0.00 0.00 0.00 3.53
646 855 0.823769 AGTCAGTCAGCAGTCGTCCA 60.824 55.000 0.00 0.00 0.00 4.02
647 856 0.387878 CAGTCAGTCAGCAGTCGTCC 60.388 60.000 0.00 0.00 0.00 4.79
648 857 0.593618 TCAGTCAGTCAGCAGTCGTC 59.406 55.000 0.00 0.00 0.00 4.20
649 858 0.312416 GTCAGTCAGTCAGCAGTCGT 59.688 55.000 0.00 0.00 0.00 4.34
650 859 0.387878 GGTCAGTCAGTCAGCAGTCG 60.388 60.000 0.00 0.00 0.00 4.18
651 860 0.387878 CGGTCAGTCAGTCAGCAGTC 60.388 60.000 0.00 0.00 0.00 3.51
652 861 1.662608 CGGTCAGTCAGTCAGCAGT 59.337 57.895 0.00 0.00 0.00 4.40
653 862 1.735920 GCGGTCAGTCAGTCAGCAG 60.736 63.158 0.00 0.00 0.00 4.24
654 863 2.340078 GCGGTCAGTCAGTCAGCA 59.660 61.111 0.00 0.00 0.00 4.41
655 864 2.433318 GGCGGTCAGTCAGTCAGC 60.433 66.667 0.00 0.00 0.00 4.26
659 868 4.008933 GGCAGGCGGTCAGTCAGT 62.009 66.667 0.00 0.00 0.00 3.41
684 893 2.367107 GGGGAGAGGGAGGGGAAC 60.367 72.222 0.00 0.00 0.00 3.62
693 902 2.689034 AAGGAAGCGGGGGAGAGG 60.689 66.667 0.00 0.00 0.00 3.69
694 903 2.736826 GGAAGGAAGCGGGGGAGAG 61.737 68.421 0.00 0.00 0.00 3.20
695 904 2.687566 GGAAGGAAGCGGGGGAGA 60.688 66.667 0.00 0.00 0.00 3.71
696 905 3.798511 GGGAAGGAAGCGGGGGAG 61.799 72.222 0.00 0.00 0.00 4.30
795 1004 2.041405 GGGGGAGTGGAGGAGAGG 60.041 72.222 0.00 0.00 0.00 3.69
796 1005 2.443016 CGGGGGAGTGGAGGAGAG 60.443 72.222 0.00 0.00 0.00 3.20
797 1006 4.779733 GCGGGGGAGTGGAGGAGA 62.780 72.222 0.00 0.00 0.00 3.71
798 1007 2.873557 TAAGCGGGGGAGTGGAGGAG 62.874 65.000 0.00 0.00 0.00 3.69
799 1008 2.873557 CTAAGCGGGGGAGTGGAGGA 62.874 65.000 0.00 0.00 0.00 3.71
874 1090 3.998672 TCGCCTTGTCGGTGGGAC 61.999 66.667 0.00 0.00 46.27 4.46
889 1115 3.206211 GATCTGGAGAGGCCGCTCG 62.206 68.421 27.46 16.37 40.66 5.03
890 1116 1.805428 GAGATCTGGAGAGGCCGCTC 61.805 65.000 26.87 26.87 40.66 5.03
930 1161 3.093172 CCCCCTCCTTCTCCTGCC 61.093 72.222 0.00 0.00 0.00 4.85
938 1169 4.089757 TAGCCGCTCCCCCTCCTT 62.090 66.667 0.00 0.00 0.00 3.36
1351 1614 1.626356 TATCCAGGGTCCAGCACAGC 61.626 60.000 0.00 0.00 0.00 4.40
1439 1702 1.167851 CATCAAGCAAAGCTCCGGAA 58.832 50.000 5.23 0.00 38.25 4.30
1441 1704 0.883833 AACATCAAGCAAAGCTCCGG 59.116 50.000 0.00 0.00 38.25 5.14
1443 1706 3.311966 GAACAACATCAAGCAAAGCTCC 58.688 45.455 0.00 0.00 38.25 4.70
1485 1749 2.301870 ACCACCGTGTCATCTGTTGTAT 59.698 45.455 0.00 0.00 0.00 2.29
1486 1750 1.689813 ACCACCGTGTCATCTGTTGTA 59.310 47.619 0.00 0.00 0.00 2.41
1525 1789 3.670627 GCAAGGAAGAAATGCAAGGTACG 60.671 47.826 0.00 0.00 39.81 3.67
1559 1823 6.260271 AGACATCTATGCTGAATGTGACATTG 59.740 38.462 16.52 3.35 0.00 2.82
1585 1849 9.725019 GTACAGTCCATGATTATCATATTTCCA 57.275 33.333 7.44 0.00 34.28 3.53
1596 1860 5.277250 TCTCCCTTGTACAGTCCATGATTA 58.723 41.667 0.00 0.00 0.00 1.75
1603 1867 4.762289 ATTCATCTCCCTTGTACAGTCC 57.238 45.455 0.00 0.00 0.00 3.85
1638 1902 2.279935 TCCCGGTGCAACAAATAACT 57.720 45.000 0.98 0.00 39.98 2.24
1660 1924 5.665459 ACAGAAGGAGTCTATTGCATACAC 58.335 41.667 0.00 0.00 33.56 2.90
1667 1931 6.402222 ACAAGCTAACAGAAGGAGTCTATTG 58.598 40.000 0.00 0.00 33.56 1.90
1676 1940 1.541588 GGGCAACAAGCTAACAGAAGG 59.458 52.381 0.00 0.00 44.79 3.46
1677 1941 2.508526 AGGGCAACAAGCTAACAGAAG 58.491 47.619 0.00 0.00 44.79 2.85
1678 1942 2.656947 AGGGCAACAAGCTAACAGAA 57.343 45.000 0.00 0.00 44.79 3.02
1679 1943 2.656947 AAGGGCAACAAGCTAACAGA 57.343 45.000 0.00 0.00 44.79 3.41
1694 1958 8.643752 CAACAAATATGCTTAACGTTTAAAGGG 58.356 33.333 5.91 0.00 0.00 3.95
1704 1968 4.864247 CCTGGTGCAACAAATATGCTTAAC 59.136 41.667 5.64 0.00 44.14 2.01
1706 1970 4.339748 TCCTGGTGCAACAAATATGCTTA 58.660 39.130 5.64 0.00 44.14 3.09
1896 2161 1.024271 GGAGCAACAGTTTCAGCACA 58.976 50.000 0.00 0.00 0.00 4.57
1906 2171 0.609957 TGGAATGGCAGGAGCAACAG 60.610 55.000 0.00 0.00 44.61 3.16
1914 2179 2.062971 AATGTAGCTGGAATGGCAGG 57.937 50.000 0.00 0.00 0.00 4.85
1918 2183 3.698040 AGCTTGAAATGTAGCTGGAATGG 59.302 43.478 0.00 0.00 45.55 3.16
1938 2203 6.013842 AGTAAGCATAAACACTGGAAAAGC 57.986 37.500 0.00 0.00 0.00 3.51
2065 2330 2.217750 CAGTGATGTCGGAACCAAACA 58.782 47.619 0.00 0.00 0.00 2.83
2297 2579 3.431572 GCAAGAACAGCACTGTAAGAGAG 59.568 47.826 3.26 0.00 44.13 3.20
2380 2662 1.332375 ACAATTGTTGTCGAACCCACG 59.668 47.619 4.92 0.00 40.56 4.94
2473 2755 4.212004 TGCAAGCGTATAGAATGCAGAATC 59.788 41.667 0.00 0.00 41.67 2.52
2558 2840 4.042174 AGTACCCCCTCCGATCAAAAATA 58.958 43.478 0.00 0.00 0.00 1.40
2559 2841 2.850568 AGTACCCCCTCCGATCAAAAAT 59.149 45.455 0.00 0.00 0.00 1.82
2560 2842 2.271777 AGTACCCCCTCCGATCAAAAA 58.728 47.619 0.00 0.00 0.00 1.94
2561 2843 1.961133 AGTACCCCCTCCGATCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2562 2844 2.852714 TAGTACCCCCTCCGATCAAA 57.147 50.000 0.00 0.00 0.00 2.69
2564 2846 3.339713 AAATAGTACCCCCTCCGATCA 57.660 47.619 0.00 0.00 0.00 2.92
2661 2943 4.402155 GGGACAAAATGGAATATGAGCACA 59.598 41.667 0.00 0.00 0.00 4.57
2862 3144 1.808945 GACACTCATGACCTGCCAAAG 59.191 52.381 0.00 0.00 0.00 2.77
2970 3252 5.824097 TCATCTGTGTTACTATGCATGCAAT 59.176 36.000 26.68 15.66 0.00 3.56
3014 3296 4.980590 TGCCAATGAACATAAACATCGAC 58.019 39.130 0.00 0.00 0.00 4.20
3030 3312 6.237901 TCTTAGAACACACATAACTGCCAAT 58.762 36.000 0.00 0.00 0.00 3.16
3079 3361 8.618677 AGATACATAGCAACAATGTTCTTCATG 58.381 33.333 0.00 0.83 38.49 3.07
3080 3362 8.743085 AGATACATAGCAACAATGTTCTTCAT 57.257 30.769 0.00 0.00 38.49 2.57
3210 3504 6.362283 CCAAAATGGTCAACGAAGTAAACATC 59.638 38.462 0.00 0.00 32.96 3.06
3420 3814 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
3421 3815 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
3422 3816 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
3423 3817 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
3424 3818 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
3425 3819 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3470 3864 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
3471 3865 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
3472 3866 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
3479 3873 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3480 3874 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3481 3875 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3482 3876 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
3483 3877 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
3484 3878 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3485 3879 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3486 3880 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3487 3881 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3488 3882 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3489 3883 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3490 3884 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3491 3885 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3492 3886 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3493 3887 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3494 3888 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3495 3889 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3496 3890 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3497 3891 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3498 3892 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3499 3893 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3500 3894 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3501 3895 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
3502 3896 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
3503 3897 0.822811 GAAACTACTCCCTCCGTCCC 59.177 60.000 0.00 0.00 0.00 4.46
3504 3898 1.849977 AGAAACTACTCCCTCCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
3505 3899 2.358582 GCTAGAAACTACTCCCTCCGTC 59.641 54.545 0.00 0.00 0.00 4.79
3506 3900 2.291411 TGCTAGAAACTACTCCCTCCGT 60.291 50.000 0.00 0.00 0.00 4.69
3507 3901 2.099427 GTGCTAGAAACTACTCCCTCCG 59.901 54.545 0.00 0.00 0.00 4.63
3508 3902 3.367321 AGTGCTAGAAACTACTCCCTCC 58.633 50.000 0.00 0.00 0.00 4.30
3509 3903 5.066764 CACTAGTGCTAGAAACTACTCCCTC 59.933 48.000 10.54 0.00 36.97 4.30
3510 3904 4.951094 CACTAGTGCTAGAAACTACTCCCT 59.049 45.833 10.54 0.00 36.97 4.20
3511 3905 4.705991 ACACTAGTGCTAGAAACTACTCCC 59.294 45.833 22.90 0.00 36.97 4.30
3512 3906 5.642686 CACACTAGTGCTAGAAACTACTCC 58.357 45.833 22.90 0.00 39.21 3.85
3533 3927 3.689649 ACCTCGGAATTACTTCAATGCAC 59.310 43.478 0.00 0.00 32.70 4.57
3554 3948 5.910637 TTGACACGTGGTACAAAGAATAC 57.089 39.130 21.57 0.00 44.16 1.89
3579 3973 4.083643 CGCTGCAAGGTTATGGATAGAATG 60.084 45.833 0.00 0.00 0.00 2.67
3608 4002 6.292923 AGATATCTCGGAATACCTCGGATAG 58.707 44.000 0.00 0.00 33.32 2.08
3609 4003 6.249911 AGATATCTCGGAATACCTCGGATA 57.750 41.667 0.00 0.00 33.32 2.59
3610 4004 5.118729 AGATATCTCGGAATACCTCGGAT 57.881 43.478 0.00 0.00 33.32 4.18
3611 4005 4.571369 AGATATCTCGGAATACCTCGGA 57.429 45.455 0.00 0.00 32.81 4.55
3612 4006 5.047943 ACAAAGATATCTCGGAATACCTCGG 60.048 44.000 5.51 0.00 0.00 4.63
3613 4007 5.859114 CACAAAGATATCTCGGAATACCTCG 59.141 44.000 5.51 0.00 0.00 4.63
3614 4008 6.750148 ACACAAAGATATCTCGGAATACCTC 58.250 40.000 5.51 0.00 0.00 3.85
3615 4009 6.732896 ACACAAAGATATCTCGGAATACCT 57.267 37.500 5.51 0.00 0.00 3.08
3616 4010 7.041984 GGAAACACAAAGATATCTCGGAATACC 60.042 40.741 5.51 1.27 0.00 2.73
3617 4011 7.711339 AGGAAACACAAAGATATCTCGGAATAC 59.289 37.037 5.51 0.00 0.00 1.89
3618 4012 7.792032 AGGAAACACAAAGATATCTCGGAATA 58.208 34.615 5.51 0.00 0.00 1.75
3619 4013 6.653989 AGGAAACACAAAGATATCTCGGAAT 58.346 36.000 5.51 0.00 0.00 3.01
3620 4014 6.049955 AGGAAACACAAAGATATCTCGGAA 57.950 37.500 5.51 0.00 0.00 4.30
3621 4015 5.677319 AGGAAACACAAAGATATCTCGGA 57.323 39.130 5.51 0.00 0.00 4.55
3622 4016 6.806751 TCTAGGAAACACAAAGATATCTCGG 58.193 40.000 5.51 3.93 0.00 4.63
3623 4017 7.759886 TGTTCTAGGAAACACAAAGATATCTCG 59.240 37.037 5.51 3.15 34.31 4.04
3668 4070 1.604604 TGGCTGCAAGGTTTACTGTC 58.395 50.000 0.50 0.00 0.00 3.51
3708 4110 3.569701 ACTGTAAAACAATCAGCCAGGTG 59.430 43.478 0.00 0.00 33.12 4.00
3818 4223 3.181473 ACGCAATAATAGGCCGTCTAACA 60.181 43.478 0.00 0.00 0.00 2.41
3864 4269 4.072131 GTCCTGGCTCTTGACAACATAAA 58.928 43.478 0.00 0.00 0.00 1.40
3924 4367 9.256477 CATACTTTATCCTATTTTGTCGTGCTA 57.744 33.333 0.00 0.00 0.00 3.49
3926 4369 8.138365 TCATACTTTATCCTATTTTGTCGTGC 57.862 34.615 0.00 0.00 0.00 5.34
3997 4440 9.784531 ATGTGAGGTGGTATTATAATTCAGAAG 57.215 33.333 2.68 0.00 0.00 2.85
4013 4456 2.546795 GCGGATAGAAGATGTGAGGTGG 60.547 54.545 0.00 0.00 0.00 4.61
4323 4766 0.185901 ACCTGTCATGCCAACAAGGT 59.814 50.000 0.00 0.00 40.61 3.50
4433 4876 1.872773 GGTGACCTGAGAGGAATCCT 58.127 55.000 0.00 0.00 37.67 3.24
4453 4896 0.748367 GAATTCCTTCGGTGCCCCTC 60.748 60.000 0.00 0.00 0.00 4.30
4507 4950 0.395686 CTGTGCCCCTCGATGATGAT 59.604 55.000 0.00 0.00 0.00 2.45
4578 5021 1.900351 CCCTCAAGCGTCTCATGGA 59.100 57.895 0.00 0.00 0.00 3.41
4594 5037 3.264104 CATGATTTGACCAATGTTGCCC 58.736 45.455 0.00 0.00 0.00 5.36
4622 5065 4.141251 TCCCTTCCCAGGTATAAAGCATTC 60.141 45.833 0.00 0.00 38.79 2.67
4652 5100 4.159879 AGTTCTATCCGACGAAAGAATGGT 59.840 41.667 0.00 0.00 31.16 3.55
4870 5324 0.108585 AACGACCTCTGTGGCATGTT 59.891 50.000 0.00 0.00 40.22 2.71
4872 5326 0.603707 ACAACGACCTCTGTGGCATG 60.604 55.000 0.00 0.00 40.22 4.06
4873 5327 0.320771 GACAACGACCTCTGTGGCAT 60.321 55.000 0.00 0.00 40.22 4.40
4874 5328 1.069090 GACAACGACCTCTGTGGCA 59.931 57.895 0.00 0.00 40.22 4.92
4895 5360 3.624326 TGTGAAAGAATTCAGCGGTTG 57.376 42.857 8.44 0.00 45.88 3.77
4904 5369 8.603242 AACGAACTACTGTATGTGAAAGAATT 57.397 30.769 0.00 0.00 0.00 2.17
4960 5425 3.535561 ACACTATGTGATTGCTAGGCAC 58.464 45.455 4.61 0.00 36.11 5.01
4983 5540 1.590259 GCAGCTGTACGGCTCTAGC 60.590 63.158 26.48 21.94 41.00 3.42
4989 5546 0.028505 CAATCATGCAGCTGTACGGC 59.971 55.000 19.39 19.39 40.28 5.68
5027 5609 0.108207 TGCGTTCCGGGAAGGTTTAA 59.892 50.000 25.38 10.47 41.99 1.52
5059 5641 0.257039 ATGTGCCCATGAGAACTCCC 59.743 55.000 0.00 0.00 0.00 4.30
5085 5667 4.383931 AGATAAGCCGGTAGGTCAGATA 57.616 45.455 1.90 0.00 40.50 1.98
5087 5669 2.750141 AGATAAGCCGGTAGGTCAGA 57.250 50.000 1.90 0.00 40.50 3.27
5088 5670 3.821421 AAAGATAAGCCGGTAGGTCAG 57.179 47.619 1.90 0.00 40.50 3.51
5206 5791 3.576118 ACTGACAATCTGACAGCTAGTGT 59.424 43.478 0.00 0.00 42.40 3.55
5213 5798 4.880759 AGAGTTGACTGACAATCTGACAG 58.119 43.478 0.00 0.00 43.81 3.51
5220 5805 6.266558 ACTGAGAGTAAGAGTTGACTGACAAT 59.733 38.462 0.00 0.00 40.76 2.71
5221 5806 5.594725 ACTGAGAGTAAGAGTTGACTGACAA 59.405 40.000 0.00 0.00 36.02 3.18
5222 5807 5.009110 CACTGAGAGTAAGAGTTGACTGACA 59.991 44.000 0.00 0.00 0.00 3.58
5223 5808 5.239744 TCACTGAGAGTAAGAGTTGACTGAC 59.760 44.000 0.00 0.00 0.00 3.51
5224 5809 5.239744 GTCACTGAGAGTAAGAGTTGACTGA 59.760 44.000 0.00 0.00 0.00 3.41
5225 5810 5.457140 GTCACTGAGAGTAAGAGTTGACTG 58.543 45.833 0.00 0.00 0.00 3.51
5226 5811 4.521256 GGTCACTGAGAGTAAGAGTTGACT 59.479 45.833 0.00 0.00 0.00 3.41
5227 5812 4.521256 AGGTCACTGAGAGTAAGAGTTGAC 59.479 45.833 0.00 0.00 0.00 3.18
5236 5821 2.873094 TTCGGAGGTCACTGAGAGTA 57.127 50.000 0.00 0.00 0.00 2.59
5259 5844 2.620367 GGGTAAGCCATGGACATTGTCA 60.620 50.000 18.40 5.42 33.19 3.58
5320 5910 3.244976 GTTTGCAATGACCTTGGAATCG 58.755 45.455 0.00 0.00 43.59 3.34
5404 6025 0.319641 ACCCTTTCGACGAGTTCTGC 60.320 55.000 0.00 0.00 0.00 4.26
5448 6069 2.263852 CAGAAGCAGGAGCAGCGA 59.736 61.111 0.00 0.00 45.49 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.