Multiple sequence alignment - TraesCS1D01G264700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G264700 chr1D 100.000 5398 0 0 1 5398 360464673 360470070 0.000000e+00 9969.0
1 TraesCS1D01G264700 chr1B 93.700 2889 104 42 1590 4429 482695975 482698834 0.000000e+00 4255.0
2 TraesCS1D01G264700 chr1B 89.965 847 62 12 3 839 482694423 482695256 0.000000e+00 1072.0
3 TraesCS1D01G264700 chr1B 90.281 782 36 15 824 1590 482695277 482696033 0.000000e+00 987.0
4 TraesCS1D01G264700 chr1B 84.357 684 65 23 4522 5194 482699136 482699788 2.740000e-177 632.0
5 TraesCS1D01G264700 chr1A 91.835 2915 127 51 1675 4524 460280089 460282957 0.000000e+00 3962.0
6 TraesCS1D01G264700 chr1A 88.676 1616 106 25 3 1584 460278453 460280025 0.000000e+00 1899.0
7 TraesCS1D01G264700 chr1A 91.450 269 19 3 4648 4913 460283663 460283930 3.070000e-97 366.0
8 TraesCS1D01G264700 chr1A 89.744 195 10 4 5001 5194 460284006 460284191 1.940000e-59 241.0
9 TraesCS1D01G264700 chr3B 85.751 772 105 5 3283 4053 680477142 680476375 0.000000e+00 811.0
10 TraesCS1D01G264700 chr3B 84.845 772 112 5 3283 4053 680676089 680675322 0.000000e+00 773.0
11 TraesCS1D01G264700 chr3B 83.808 772 120 5 3283 4053 680731965 680731198 0.000000e+00 728.0
12 TraesCS1D01G264700 chr3B 94.561 239 13 0 2515 2753 680477783 680477545 2.370000e-98 370.0
13 TraesCS1D01G264700 chr3B 94.142 239 14 0 2515 2753 680732614 680732376 1.100000e-96 364.0
14 TraesCS1D01G264700 chr3B 87.379 206 26 0 3064 3269 680676409 680676204 2.510000e-58 237.0
15 TraesCS1D01G264700 chr3B 86.893 206 27 0 3064 3269 680732278 680732073 1.170000e-56 231.0
16 TraesCS1D01G264700 chr3B 96.226 53 2 0 5324 5376 750787476 750787424 2.680000e-13 87.9
17 TraesCS1D01G264700 chr3D 85.059 763 109 5 3283 4044 516672132 516672890 0.000000e+00 773.0
18 TraesCS1D01G264700 chr3D 93.927 247 14 1 2507 2753 516671476 516671721 6.600000e-99 372.0
19 TraesCS1D01G264700 chr3D 93.061 245 16 1 2509 2753 516855891 516856134 1.850000e-94 357.0
20 TraesCS1D01G264700 chr3A 84.797 763 111 5 3283 4044 651963058 651963816 0.000000e+00 761.0
21 TraesCS1D01G264700 chr3A 84.293 764 113 7 3283 4044 651649624 651650382 0.000000e+00 739.0
22 TraesCS1D01G264700 chr3A 94.286 245 13 1 2509 2753 651648970 651649213 1.840000e-99 374.0
23 TraesCS1D01G264700 chr3A 94.538 238 13 0 2516 2753 651996514 651996751 8.540000e-98 368.0
24 TraesCS1D01G264700 chr3A 93.724 239 15 0 2515 2753 651962409 651962647 5.140000e-95 359.0
25 TraesCS1D01G264700 chr3A 96.535 202 6 1 5198 5398 702965102 702964901 3.120000e-87 333.0
26 TraesCS1D01G264700 chr3A 87.379 206 26 0 3061 3266 651649308 651649513 2.510000e-58 237.0
27 TraesCS1D01G264700 chr3A 86.893 206 27 0 3061 3266 651962742 651962947 1.170000e-56 231.0
28 TraesCS1D01G264700 chr7D 84.218 754 111 6 3289 4040 502232291 502233038 0.000000e+00 726.0
29 TraesCS1D01G264700 chr7D 93.333 135 6 3 5198 5332 64072770 64072639 4.270000e-46 196.0
30 TraesCS1D01G264700 chr7A 95.545 202 8 1 5198 5398 21230484 21230283 6.740000e-84 322.0
31 TraesCS1D01G264700 chr7A 95.522 67 2 1 5324 5390 722574413 722574348 7.390000e-19 106.0
32 TraesCS1D01G264700 chr4D 85.430 302 41 2 3117 3415 74159642 74159341 1.460000e-80 311.0
33 TraesCS1D01G264700 chr4D 94.554 202 10 1 5198 5398 464678744 464678945 1.460000e-80 311.0
34 TraesCS1D01G264700 chr4A 84.566 311 42 3 3108 3415 513804921 513805228 2.440000e-78 303.0
35 TraesCS1D01G264700 chr4B 84.768 302 43 2 3117 3415 106492368 106492067 3.160000e-77 300.0
36 TraesCS1D01G264700 chr4B 100.000 28 0 0 2802 2829 544029141 544029168 1.000000e-02 52.8
37 TraesCS1D01G264700 chr2D 91.852 135 8 3 5198 5332 59474952 59474821 9.230000e-43 185.0
38 TraesCS1D01G264700 chr5A 91.011 89 7 1 5244 5332 631998735 631998822 9.500000e-23 119.0
39 TraesCS1D01G264700 chr2A 92.537 67 4 1 4433 4498 512253664 512253730 1.600000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G264700 chr1D 360464673 360470070 5397 False 9969.000000 9969 100.000000 1 5398 1 chr1D.!!$F1 5397
1 TraesCS1D01G264700 chr1B 482694423 482699788 5365 False 1736.500000 4255 89.575750 3 5194 4 chr1B.!!$F1 5191
2 TraesCS1D01G264700 chr1A 460278453 460284191 5738 False 1617.000000 3962 90.426250 3 5194 4 chr1A.!!$F1 5191
3 TraesCS1D01G264700 chr3B 680476375 680477783 1408 True 590.500000 811 90.156000 2515 4053 2 chr3B.!!$R2 1538
4 TraesCS1D01G264700 chr3B 680675322 680676409 1087 True 505.000000 773 86.112000 3064 4053 2 chr3B.!!$R3 989
5 TraesCS1D01G264700 chr3B 680731198 680732614 1416 True 441.000000 728 88.281000 2515 4053 3 chr3B.!!$R4 1538
6 TraesCS1D01G264700 chr3D 516671476 516672890 1414 False 572.500000 773 89.493000 2507 4044 2 chr3D.!!$F2 1537
7 TraesCS1D01G264700 chr3A 651962409 651963816 1407 False 450.333333 761 88.471333 2515 4044 3 chr3A.!!$F3 1529
8 TraesCS1D01G264700 chr3A 651648970 651650382 1412 False 450.000000 739 88.652667 2509 4044 3 chr3A.!!$F2 1535
9 TraesCS1D01G264700 chr7D 502232291 502233038 747 False 726.000000 726 84.218000 3289 4040 1 chr7D.!!$F1 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 962 0.469144 ATCATCCAGCCATGCATGCA 60.469 50.0 25.04 25.04 0.0 3.96 F
2051 2184 0.034059 CCTCACACACTCACTCACCC 59.966 60.0 0.00 0.00 0.0 4.61 F
2190 2323 0.108138 GCAGCCAGGTACAACGAGAT 60.108 55.0 0.00 0.00 0.0 2.75 F
3054 3231 0.165944 CCGTCGCTTGAAACATGTCC 59.834 55.0 0.00 0.00 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 2337 0.177373 TGGTATCTCAGCAGCAGCAG 59.823 55.000 3.17 0.00 45.49 4.24 R
3017 3191 1.523934 CGGTAAGTTCACGTTCACCAC 59.476 52.381 0.00 0.00 0.00 4.16 R
3748 4056 1.916697 GAGGTTGAGCTTGAAGCCGC 61.917 60.000 14.45 7.13 43.77 6.53 R
4913 6026 0.606944 AAAAATGGCCGTCCTACGCA 60.607 50.000 0.00 0.00 40.91 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.351054 CAGGGGCGCCTCAAGGTT 62.351 66.667 31.81 3.39 37.57 3.50
54 55 2.666098 GGGGCGCCTCAAGGTTCTA 61.666 63.158 28.56 0.00 37.57 2.10
57 58 0.815615 GGCGCCTCAAGGTTCTATGG 60.816 60.000 22.15 0.00 37.57 2.74
111 113 2.038295 TGGCTTGTTATTTTTGCCCAGG 59.962 45.455 0.00 0.00 42.62 4.45
112 114 2.038426 GGCTTGTTATTTTTGCCCAGGT 59.962 45.455 0.00 0.00 37.81 4.00
114 116 3.864540 GCTTGTTATTTTTGCCCAGGTCC 60.865 47.826 0.00 0.00 0.00 4.46
153 156 4.035017 CCACGAAATTTTCACACACTCAC 58.965 43.478 9.66 0.00 0.00 3.51
161 164 8.687824 AAATTTTCACACACTCACAAAAGTAG 57.312 30.769 0.00 0.00 0.00 2.57
222 232 3.129462 TGAGCTCGTGATAAGAAGGACAG 59.871 47.826 9.64 0.00 0.00 3.51
223 233 3.093057 AGCTCGTGATAAGAAGGACAGT 58.907 45.455 0.00 0.00 0.00 3.55
324 335 8.079809 GCCTCTAGTTTTCTTATAGCTAGACTG 58.920 40.741 0.00 0.00 34.88 3.51
334 345 1.139947 GCTAGACTGCGTGACTCCC 59.860 63.158 0.00 0.00 0.00 4.30
427 439 1.263217 CACACCGCTAACACTTTGGTC 59.737 52.381 0.00 0.00 0.00 4.02
433 445 1.194772 GCTAACACTTTGGTCGCTCAC 59.805 52.381 0.00 0.00 0.00 3.51
457 469 3.365220 GCAAACATGAGACGTCTACAGTC 59.635 47.826 20.09 6.42 38.81 3.51
500 512 4.095483 CGAGCTGCTTTGTTAAGATCCATT 59.905 41.667 2.53 0.00 32.92 3.16
562 577 1.935873 CAGGATATGTTCGCCACACAG 59.064 52.381 0.00 0.00 38.61 3.66
608 623 3.536158 TTTCCAACATTTCGCTTCTCG 57.464 42.857 0.00 0.00 40.15 4.04
663 678 3.379240 CCACACATTTCGACATTTTGCA 58.621 40.909 0.00 0.00 0.00 4.08
664 679 3.801050 CCACACATTTCGACATTTTGCAA 59.199 39.130 0.00 0.00 0.00 4.08
704 719 1.235281 GGCGCGAAGTCTTCCCTTTT 61.235 55.000 12.10 0.00 0.00 2.27
706 721 1.399855 GCGCGAAGTCTTCCCTTTTTC 60.400 52.381 12.10 0.00 0.00 2.29
715 730 5.377478 AGTCTTCCCTTTTTCTTCACGATT 58.623 37.500 0.00 0.00 0.00 3.34
719 734 7.119262 GTCTTCCCTTTTTCTTCACGATTCATA 59.881 37.037 0.00 0.00 0.00 2.15
720 735 6.737254 TCCCTTTTTCTTCACGATTCATAC 57.263 37.500 0.00 0.00 0.00 2.39
733 748 0.674269 TTCATACGGCCGGGAACAAC 60.674 55.000 31.76 0.00 0.00 3.32
814 829 3.005155 GGTACCGAACATATTCTACGCCT 59.995 47.826 0.00 0.00 32.12 5.52
836 888 1.740025 GGCAAAAAGGATGGTCGAGAG 59.260 52.381 0.00 0.00 0.00 3.20
902 959 2.107726 ACAGTATCATCCAGCCATGCAT 59.892 45.455 0.00 0.00 0.00 3.96
903 960 2.488153 CAGTATCATCCAGCCATGCATG 59.512 50.000 20.19 20.19 0.00 4.06
904 961 1.201647 GTATCATCCAGCCATGCATGC 59.798 52.381 21.69 11.82 0.00 4.06
905 962 0.469144 ATCATCCAGCCATGCATGCA 60.469 50.000 25.04 25.04 0.00 3.96
906 963 0.469144 TCATCCAGCCATGCATGCAT 60.469 50.000 27.46 27.46 37.08 3.96
1004 1061 1.010125 CGTTGGGCACACTTGAACG 60.010 57.895 0.00 0.00 34.13 3.95
1052 1115 7.121759 CCCATCTCTTTGACATAACACTTCATT 59.878 37.037 0.00 0.00 0.00 2.57
1054 1117 8.509690 CATCTCTTTGACATAACACTTCATTGT 58.490 33.333 0.00 0.00 0.00 2.71
1094 1157 3.794786 TCTCTTGCAAGGGGAGAGA 57.205 52.632 25.88 17.68 42.55 3.10
1115 1178 6.012333 AGAGAAGACCAAGTAGAGGAGACTTA 60.012 42.308 0.00 0.00 44.43 2.24
1216 1288 4.171878 TGTTTGTTACTCCATGGTCCAA 57.828 40.909 12.58 5.99 0.00 3.53
1326 1399 1.443702 GTTTTCAATCGGGCCGTGC 60.444 57.895 27.32 0.89 0.00 5.34
1330 1403 3.261951 CAATCGGGCCGTGCGTAG 61.262 66.667 27.32 7.46 0.00 3.51
1359 1436 1.079819 GCTAGGCACGCTGTTCTCA 60.080 57.895 0.00 0.00 0.00 3.27
1457 1543 1.633945 GAGGGGTCCAACCATTACACT 59.366 52.381 0.00 0.00 41.02 3.55
1539 1625 2.582493 CCGCAAAAACCCTGGCCAT 61.582 57.895 5.51 0.00 0.00 4.40
1540 1626 1.254284 CCGCAAAAACCCTGGCCATA 61.254 55.000 5.51 0.00 0.00 2.74
1541 1627 0.605589 CGCAAAAACCCTGGCCATAA 59.394 50.000 5.51 0.00 0.00 1.90
1542 1628 1.001406 CGCAAAAACCCTGGCCATAAA 59.999 47.619 5.51 0.00 0.00 1.40
1543 1629 2.354604 CGCAAAAACCCTGGCCATAAAT 60.355 45.455 5.51 0.00 0.00 1.40
1544 1630 3.684908 GCAAAAACCCTGGCCATAAATT 58.315 40.909 5.51 0.00 0.00 1.82
1545 1631 3.689161 GCAAAAACCCTGGCCATAAATTC 59.311 43.478 5.51 0.00 0.00 2.17
1546 1632 4.805609 GCAAAAACCCTGGCCATAAATTCA 60.806 41.667 5.51 0.00 0.00 2.57
1547 1633 4.824479 AAAACCCTGGCCATAAATTCAG 57.176 40.909 5.51 0.00 0.00 3.02
1548 1634 2.459555 ACCCTGGCCATAAATTCAGG 57.540 50.000 5.51 0.00 44.60 3.86
1553 1639 4.391405 CTGGCCATAAATTCAGGAAACC 57.609 45.455 5.51 0.00 0.00 3.27
1554 1640 3.768757 CTGGCCATAAATTCAGGAAACCA 59.231 43.478 5.51 0.00 0.00 3.67
1555 1641 4.360889 TGGCCATAAATTCAGGAAACCAT 58.639 39.130 0.00 0.00 0.00 3.55
1556 1642 4.782156 TGGCCATAAATTCAGGAAACCATT 59.218 37.500 0.00 0.00 0.00 3.16
1557 1643 5.250313 TGGCCATAAATTCAGGAAACCATTT 59.750 36.000 0.00 0.00 0.00 2.32
1558 1644 6.179756 GGCCATAAATTCAGGAAACCATTTT 58.820 36.000 0.00 0.00 0.00 1.82
1559 1645 7.038017 TGGCCATAAATTCAGGAAACCATTTTA 60.038 33.333 0.00 0.00 0.00 1.52
1560 1646 7.495606 GGCCATAAATTCAGGAAACCATTTTAG 59.504 37.037 0.00 0.00 0.00 1.85
1561 1647 7.011389 GCCATAAATTCAGGAAACCATTTTAGC 59.989 37.037 0.00 0.00 0.00 3.09
1562 1648 8.260114 CCATAAATTCAGGAAACCATTTTAGCT 58.740 33.333 0.00 0.00 0.00 3.32
1563 1649 9.090692 CATAAATTCAGGAAACCATTTTAGCTG 57.909 33.333 0.00 0.00 0.00 4.24
1564 1650 6.916360 AATTCAGGAAACCATTTTAGCTGA 57.084 33.333 0.00 0.00 0.00 4.26
1565 1651 5.964958 TTCAGGAAACCATTTTAGCTGAG 57.035 39.130 0.00 0.00 0.00 3.35
1566 1652 3.758554 TCAGGAAACCATTTTAGCTGAGC 59.241 43.478 0.00 0.00 0.00 4.26
1567 1653 3.507233 CAGGAAACCATTTTAGCTGAGCA 59.493 43.478 7.39 0.00 0.00 4.26
1568 1654 4.022068 CAGGAAACCATTTTAGCTGAGCAA 60.022 41.667 7.39 0.00 0.00 3.91
1569 1655 4.774200 AGGAAACCATTTTAGCTGAGCAAT 59.226 37.500 7.39 0.00 0.00 3.56
1570 1656 5.246883 AGGAAACCATTTTAGCTGAGCAATT 59.753 36.000 7.39 0.00 0.00 2.32
1571 1657 5.934043 GGAAACCATTTTAGCTGAGCAATTT 59.066 36.000 7.39 0.00 0.00 1.82
1572 1658 6.427853 GGAAACCATTTTAGCTGAGCAATTTT 59.572 34.615 7.39 0.00 0.00 1.82
1573 1659 7.360353 GGAAACCATTTTAGCTGAGCAATTTTC 60.360 37.037 7.39 6.01 0.00 2.29
1574 1660 6.350629 ACCATTTTAGCTGAGCAATTTTCT 57.649 33.333 7.39 0.00 0.00 2.52
1575 1661 6.393171 ACCATTTTAGCTGAGCAATTTTCTC 58.607 36.000 7.39 0.00 0.00 2.87
1576 1662 6.210185 ACCATTTTAGCTGAGCAATTTTCTCT 59.790 34.615 7.39 0.00 0.00 3.10
1577 1663 7.095270 CCATTTTAGCTGAGCAATTTTCTCTT 58.905 34.615 7.39 0.00 0.00 2.85
1578 1664 7.601508 CCATTTTAGCTGAGCAATTTTCTCTTT 59.398 33.333 7.39 0.00 0.00 2.52
1579 1665 8.985805 CATTTTAGCTGAGCAATTTTCTCTTTT 58.014 29.630 7.39 0.00 0.00 2.27
1580 1666 8.947055 TTTTAGCTGAGCAATTTTCTCTTTTT 57.053 26.923 7.39 0.00 0.00 1.94
1721 1847 0.396001 TGCTACACCCATGCATGCAT 60.396 50.000 27.46 27.46 37.08 3.96
1746 1872 3.079578 CTGATGCACACCACTTGATCTT 58.920 45.455 0.00 0.00 0.00 2.40
1781 1907 0.105593 CTACACATGCGATCTGCCCT 59.894 55.000 7.00 0.00 45.60 5.19
1782 1908 0.541392 TACACATGCGATCTGCCCTT 59.459 50.000 7.00 0.00 45.60 3.95
1783 1909 0.745845 ACACATGCGATCTGCCCTTC 60.746 55.000 7.00 0.00 45.60 3.46
1823 1950 5.447683 GCGCATGACATATTCTTCTTCACAA 60.448 40.000 0.30 0.00 0.00 3.33
1885 2012 2.747446 GGCTTCAACTTAAAGATCGCCA 59.253 45.455 0.00 0.00 33.49 5.69
1927 2054 4.214545 CCTTGGTGTACGCTACAAAATTCA 59.785 41.667 6.35 0.00 40.93 2.57
2040 2173 3.129462 CGCTCTTATCTCTTCCTCACACA 59.871 47.826 0.00 0.00 0.00 3.72
2041 2174 4.429108 GCTCTTATCTCTTCCTCACACAC 58.571 47.826 0.00 0.00 0.00 3.82
2042 2175 4.159506 GCTCTTATCTCTTCCTCACACACT 59.840 45.833 0.00 0.00 0.00 3.55
2043 2176 5.678616 GCTCTTATCTCTTCCTCACACACTC 60.679 48.000 0.00 0.00 0.00 3.51
2044 2177 5.325239 TCTTATCTCTTCCTCACACACTCA 58.675 41.667 0.00 0.00 0.00 3.41
2045 2178 3.951775 ATCTCTTCCTCACACACTCAC 57.048 47.619 0.00 0.00 0.00 3.51
2046 2179 2.950781 TCTCTTCCTCACACACTCACT 58.049 47.619 0.00 0.00 0.00 3.41
2047 2180 2.887783 TCTCTTCCTCACACACTCACTC 59.112 50.000 0.00 0.00 0.00 3.51
2048 2181 2.625314 CTCTTCCTCACACACTCACTCA 59.375 50.000 0.00 0.00 0.00 3.41
2049 2182 2.362397 TCTTCCTCACACACTCACTCAC 59.638 50.000 0.00 0.00 0.00 3.51
2051 2184 0.034059 CCTCACACACTCACTCACCC 59.966 60.000 0.00 0.00 0.00 4.61
2053 2186 1.300931 CACACACTCACTCACCCCG 60.301 63.158 0.00 0.00 0.00 5.73
2069 2202 3.214123 CGCCCCGATCGACCACTA 61.214 66.667 18.66 0.00 0.00 2.74
2070 2203 2.561956 CGCCCCGATCGACCACTAT 61.562 63.158 18.66 0.00 0.00 2.12
2071 2204 1.239296 CGCCCCGATCGACCACTATA 61.239 60.000 18.66 0.00 0.00 1.31
2072 2205 0.243095 GCCCCGATCGACCACTATAC 59.757 60.000 18.66 0.00 0.00 1.47
2131 2264 0.898326 GCCTTTGAATTCCACCCCGT 60.898 55.000 2.27 0.00 0.00 5.28
2138 2271 3.628646 ATTCCACCCCGTGAGCAGC 62.629 63.158 0.00 0.00 35.23 5.25
2142 2275 4.021925 ACCCCGTGAGCAGCCTTC 62.022 66.667 0.00 0.00 0.00 3.46
2178 2311 1.153409 CTCACTAGCCAGCAGCCAG 60.153 63.158 0.00 0.00 45.47 4.85
2179 2312 2.124819 CACTAGCCAGCAGCCAGG 60.125 66.667 0.00 0.00 45.47 4.45
2180 2313 2.608988 ACTAGCCAGCAGCCAGGT 60.609 61.111 3.58 0.00 45.47 4.00
2181 2314 1.306141 ACTAGCCAGCAGCCAGGTA 60.306 57.895 3.58 0.00 45.47 3.08
2183 2316 1.612146 TAGCCAGCAGCCAGGTACA 60.612 57.895 3.58 0.00 45.47 2.90
2186 2319 2.034879 CCAGCAGCCAGGTACAACG 61.035 63.158 0.00 0.00 0.00 4.10
2187 2320 1.005037 CAGCAGCCAGGTACAACGA 60.005 57.895 0.00 0.00 0.00 3.85
2188 2321 1.016130 CAGCAGCCAGGTACAACGAG 61.016 60.000 0.00 0.00 0.00 4.18
2189 2322 1.185618 AGCAGCCAGGTACAACGAGA 61.186 55.000 0.00 0.00 0.00 4.04
2190 2323 0.108138 GCAGCCAGGTACAACGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
2191 2324 1.136305 GCAGCCAGGTACAACGAGATA 59.864 52.381 0.00 0.00 0.00 1.98
2192 2325 2.224066 GCAGCCAGGTACAACGAGATAT 60.224 50.000 0.00 0.00 0.00 1.63
2193 2326 3.005472 GCAGCCAGGTACAACGAGATATA 59.995 47.826 0.00 0.00 0.00 0.86
2194 2327 4.500887 GCAGCCAGGTACAACGAGATATAA 60.501 45.833 0.00 0.00 0.00 0.98
2195 2328 5.597806 CAGCCAGGTACAACGAGATATAAA 58.402 41.667 0.00 0.00 0.00 1.40
2196 2329 6.223852 CAGCCAGGTACAACGAGATATAAAT 58.776 40.000 0.00 0.00 0.00 1.40
2199 2332 7.232941 AGCCAGGTACAACGAGATATAAATACT 59.767 37.037 0.00 0.00 0.00 2.12
2200 2333 7.328737 GCCAGGTACAACGAGATATAAATACTG 59.671 40.741 0.00 0.00 0.00 2.74
2201 2334 7.328737 CCAGGTACAACGAGATATAAATACTGC 59.671 40.741 0.00 0.00 0.00 4.40
2202 2335 8.082852 CAGGTACAACGAGATATAAATACTGCT 58.917 37.037 0.00 0.00 0.00 4.24
2203 2336 8.082852 AGGTACAACGAGATATAAATACTGCTG 58.917 37.037 0.00 0.00 0.00 4.41
2204 2337 6.771188 ACAACGAGATATAAATACTGCTGC 57.229 37.500 0.00 0.00 0.00 5.25
2206 2339 6.422100 ACAACGAGATATAAATACTGCTGCTG 59.578 38.462 4.89 4.89 0.00 4.41
2207 2340 4.926238 ACGAGATATAAATACTGCTGCTGC 59.074 41.667 8.89 8.89 40.20 5.25
2210 2343 4.694509 AGATATAAATACTGCTGCTGCTGC 59.305 41.667 22.51 22.51 41.07 5.25
2223 2382 0.177373 CTGCTGCTGCTGAGATACCA 59.823 55.000 17.00 0.00 40.01 3.25
2224 2383 0.835276 TGCTGCTGCTGAGATACCAT 59.165 50.000 17.00 0.00 40.48 3.55
2226 2385 2.435437 TGCTGCTGCTGAGATACCATTA 59.565 45.455 17.00 0.00 40.48 1.90
2228 2387 3.244009 GCTGCTGCTGAGATACCATTAGA 60.244 47.826 10.92 0.00 36.03 2.10
2230 2389 3.963374 TGCTGCTGAGATACCATTAGACT 59.037 43.478 0.00 0.00 0.00 3.24
2312 2480 4.555709 ACGGCGTGGGCAAGAACA 62.556 61.111 13.76 0.00 42.47 3.18
2324 2495 1.073284 GCAAGAACAACTACCAGGGGA 59.927 52.381 0.00 0.00 0.00 4.81
2432 2603 3.227810 AGCGTACCGGTAAGAAAGAAG 57.772 47.619 28.65 5.81 35.27 2.85
2445 2616 6.879458 GGTAAGAAAGAAGGAAAGATGCTACA 59.121 38.462 0.00 0.00 0.00 2.74
2496 2667 0.179067 TGTGACGGGACAAACTGACC 60.179 55.000 0.00 0.00 0.00 4.02
2502 2673 0.250770 GGGACAAACTGACCTGGACC 60.251 60.000 0.00 0.00 32.77 4.46
2759 2930 1.800315 CGCCAACCTCAGTACGTCG 60.800 63.158 0.00 0.00 0.00 5.12
2769 2940 2.954868 GTACGTCGGCATGCCTCG 60.955 66.667 33.45 33.45 37.22 4.63
2781 2953 2.280797 GCCTCGCACTGTTCACCA 60.281 61.111 0.00 0.00 0.00 4.17
2788 2960 1.160329 GCACTGTTCACCAAGCTCGT 61.160 55.000 0.00 0.00 0.00 4.18
2796 2968 3.394674 TCACCAAGCTCGTGTAATTCA 57.605 42.857 12.27 0.00 32.86 2.57
2802 2974 2.795121 GCTCGTGTAATTCACAGCTG 57.205 50.000 13.48 13.48 46.44 4.24
2999 3172 2.845967 CACACAAACTTTCTGCAACGAC 59.154 45.455 0.00 0.00 0.00 4.34
3017 3191 2.791560 CGACGATTTGATCTGTGCTAGG 59.208 50.000 0.00 0.00 0.00 3.02
3054 3231 0.165944 CCGTCGCTTGAAACATGTCC 59.834 55.000 0.00 0.00 0.00 4.02
3090 3267 2.954753 GCCAACTGCTTCCACGTCG 61.955 63.158 0.00 0.00 36.87 5.12
3707 4015 2.046892 CAGAGGTGGCCCAAGTCG 60.047 66.667 0.00 0.00 0.00 4.18
3708 4016 4.021925 AGAGGTGGCCCAAGTCGC 62.022 66.667 0.00 0.00 0.00 5.19
3748 4056 3.827898 GGTCCCGCTCGTCTCCTG 61.828 72.222 0.00 0.00 0.00 3.86
3860 4168 4.493747 GTCGTCGGCTTCCTCGGG 62.494 72.222 0.00 0.00 0.00 5.14
4127 4435 4.489810 CTCGATGGACAGAATATGCCTAC 58.510 47.826 0.00 0.00 0.00 3.18
4202 4511 9.462174 CATGTTCAAGTAATTGTTGCTTCTAAA 57.538 29.630 2.43 0.00 33.12 1.85
4393 4708 9.881649 GTATTAAGATCATTATCCAGATGAGCA 57.118 33.333 5.33 0.00 41.18 4.26
4429 4744 2.689083 CACTTTGTCGACTGGTGCA 58.311 52.632 17.92 0.00 0.00 4.57
4438 4753 0.040067 CGACTGGTGCAGCCTTTTTC 60.040 55.000 14.36 1.63 38.35 2.29
4444 4759 3.269178 TGGTGCAGCCTTTTTCTTTTTG 58.731 40.909 14.36 0.00 38.35 2.44
4445 4760 2.032054 GGTGCAGCCTTTTTCTTTTTGC 59.968 45.455 4.03 0.00 0.00 3.68
4458 4784 7.506296 TTTTCTTTTTGCGAGAGAACTTTTC 57.494 32.000 2.29 0.00 0.00 2.29
4503 4829 2.755650 AGTACAAAGAAGACTGGTGCG 58.244 47.619 0.00 0.00 0.00 5.34
4602 5153 0.099436 GCGATCATGTGCAACTTCCC 59.901 55.000 0.00 0.00 38.04 3.97
4627 5457 6.544928 AGGGAGAAAAACATTTGACAAAGT 57.455 33.333 6.77 2.48 0.00 2.66
4660 5769 3.920231 TGATGAGTAAGGCATGAGCTT 57.080 42.857 0.00 0.00 41.70 3.74
4663 5772 3.701205 TGAGTAAGGCATGAGCTTTGA 57.299 42.857 0.00 0.00 40.59 2.69
4676 5785 6.527722 GCATGAGCTTTGACGATTTCATTAAA 59.472 34.615 0.00 0.00 37.91 1.52
4795 5907 7.499232 CCCTCAAATTTACCGAAAGTAGATCAT 59.501 37.037 0.00 0.00 30.92 2.45
4840 5952 6.881065 TGACAATTTAGTCCCTCATCTTTCAG 59.119 38.462 0.00 0.00 37.73 3.02
4851 5963 5.525378 CCCTCATCTTTCAGAAACGGATAAG 59.475 44.000 0.00 0.00 0.00 1.73
4863 5975 6.416750 CAGAAACGGATAAGTTTTGTCCAAAC 59.583 38.462 5.61 0.00 43.54 2.93
4877 5990 2.116238 TCCAAACCCGGATTAGAGAGG 58.884 52.381 0.73 0.00 0.00 3.69
4910 6023 4.023707 CACATGGTGTTGGTTTTCTCTCTC 60.024 45.833 0.00 0.00 0.00 3.20
4913 6026 3.202151 TGGTGTTGGTTTTCTCTCTCCTT 59.798 43.478 0.00 0.00 0.00 3.36
4914 6027 3.565902 GGTGTTGGTTTTCTCTCTCCTTG 59.434 47.826 0.00 0.00 0.00 3.61
4928 6041 2.186903 CTTGCGTAGGACGGCCAT 59.813 61.111 11.69 0.00 42.82 4.40
4929 6042 1.449601 CTTGCGTAGGACGGCCATT 60.450 57.895 11.69 0.00 42.82 3.16
4962 6078 2.100584 CGAGCTCTATCCCCTCATATGC 59.899 54.545 12.85 0.00 0.00 3.14
4975 6091 5.221925 CCCCTCATATGCACAAACTATAGGT 60.222 44.000 4.43 0.00 0.00 3.08
4978 6094 7.039011 CCCTCATATGCACAAACTATAGGTAGA 60.039 40.741 4.43 0.00 0.00 2.59
4998 6115 9.905713 AGGTAGATCTTATGCTTTTGATGTTAA 57.094 29.630 0.00 0.00 0.00 2.01
5061 6208 4.365514 TCCACTAGTGCAGATTTTTCCA 57.634 40.909 17.86 0.00 0.00 3.53
5062 6209 4.922206 TCCACTAGTGCAGATTTTTCCAT 58.078 39.130 17.86 0.00 0.00 3.41
5143 6290 1.766059 TGATAGGGGGTGCTCGCAT 60.766 57.895 5.16 0.00 0.00 4.73
5151 6298 1.616865 GGGGTGCTCGCATACTATACA 59.383 52.381 5.16 0.00 0.00 2.29
5209 6356 6.913170 CACGATAGGGGAATCCATTTTTATG 58.087 40.000 0.09 0.00 43.77 1.90
5210 6357 6.714810 CACGATAGGGGAATCCATTTTTATGA 59.285 38.462 0.09 0.00 43.77 2.15
5211 6358 6.715264 ACGATAGGGGAATCCATTTTTATGAC 59.285 38.462 0.09 0.00 43.77 3.06
5212 6359 6.714810 CGATAGGGGAATCCATTTTTATGACA 59.285 38.462 0.09 0.00 38.24 3.58
5213 6360 7.394359 CGATAGGGGAATCCATTTTTATGACAT 59.606 37.037 0.09 0.00 38.24 3.06
5214 6361 6.736110 AGGGGAATCCATTTTTATGACATG 57.264 37.500 0.09 0.00 38.24 3.21
5215 6362 6.204555 AGGGGAATCCATTTTTATGACATGT 58.795 36.000 0.00 0.00 38.24 3.21
5216 6363 6.673537 AGGGGAATCCATTTTTATGACATGTT 59.326 34.615 0.00 0.00 38.24 2.71
5217 6364 7.182568 AGGGGAATCCATTTTTATGACATGTTT 59.817 33.333 0.00 0.00 38.24 2.83
5218 6365 7.495606 GGGGAATCCATTTTTATGACATGTTTC 59.504 37.037 0.00 0.00 35.00 2.78
5219 6366 8.260114 GGGAATCCATTTTTATGACATGTTTCT 58.740 33.333 0.00 0.00 0.00 2.52
5224 6371 9.513906 TCCATTTTTATGACATGTTTCTAGTGA 57.486 29.630 0.00 0.00 0.00 3.41
5225 6372 9.778993 CCATTTTTATGACATGTTTCTAGTGAG 57.221 33.333 0.00 0.00 0.00 3.51
5228 6375 9.554395 TTTTTATGACATGTTTCTAGTGAGACA 57.446 29.630 0.00 0.00 40.76 3.41
5229 6376 8.763049 TTTATGACATGTTTCTAGTGAGACAG 57.237 34.615 0.00 0.00 40.02 3.51
5230 6377 5.139435 TGACATGTTTCTAGTGAGACAGG 57.861 43.478 0.00 0.00 42.36 4.00
5231 6378 4.021104 TGACATGTTTCTAGTGAGACAGGG 60.021 45.833 0.00 0.21 41.43 4.45
5232 6379 3.904339 ACATGTTTCTAGTGAGACAGGGT 59.096 43.478 0.00 0.70 41.43 4.34
5233 6380 5.084519 ACATGTTTCTAGTGAGACAGGGTA 58.915 41.667 0.00 0.00 41.43 3.69
5234 6381 5.721960 ACATGTTTCTAGTGAGACAGGGTAT 59.278 40.000 0.00 0.00 41.43 2.73
5235 6382 6.895756 ACATGTTTCTAGTGAGACAGGGTATA 59.104 38.462 0.00 0.00 41.43 1.47
5236 6383 7.399191 ACATGTTTCTAGTGAGACAGGGTATAA 59.601 37.037 0.00 0.00 41.43 0.98
5237 6384 7.973048 TGTTTCTAGTGAGACAGGGTATAAT 57.027 36.000 0.00 0.00 33.20 1.28
5238 6385 8.375493 TGTTTCTAGTGAGACAGGGTATAATT 57.625 34.615 0.00 0.00 33.20 1.40
5239 6386 9.483489 TGTTTCTAGTGAGACAGGGTATAATTA 57.517 33.333 0.00 0.00 33.20 1.40
5242 6389 8.707796 TCTAGTGAGACAGGGTATAATTAAGG 57.292 38.462 0.00 0.00 0.00 2.69
5243 6390 6.749036 AGTGAGACAGGGTATAATTAAGGG 57.251 41.667 0.00 0.00 0.00 3.95
5244 6391 5.607171 AGTGAGACAGGGTATAATTAAGGGG 59.393 44.000 0.00 0.00 0.00 4.79
5245 6392 5.368816 GTGAGACAGGGTATAATTAAGGGGT 59.631 44.000 0.00 0.00 0.00 4.95
5246 6393 5.974370 TGAGACAGGGTATAATTAAGGGGTT 59.026 40.000 0.00 0.00 0.00 4.11
5247 6394 6.449041 TGAGACAGGGTATAATTAAGGGGTTT 59.551 38.462 0.00 0.00 0.00 3.27
5248 6395 7.628505 TGAGACAGGGTATAATTAAGGGGTTTA 59.371 37.037 0.00 0.00 0.00 2.01
5249 6396 8.591526 AGACAGGGTATAATTAAGGGGTTTAT 57.408 34.615 0.00 0.00 0.00 1.40
5250 6397 8.445588 AGACAGGGTATAATTAAGGGGTTTATG 58.554 37.037 0.00 0.00 0.00 1.90
5251 6398 8.352808 ACAGGGTATAATTAAGGGGTTTATGA 57.647 34.615 0.00 0.00 0.00 2.15
5252 6399 8.793720 ACAGGGTATAATTAAGGGGTTTATGAA 58.206 33.333 0.00 0.00 0.00 2.57
5253 6400 9.649316 CAGGGTATAATTAAGGGGTTTATGAAA 57.351 33.333 0.00 0.00 0.00 2.69
5263 6410 9.549078 TTAAGGGGTTTATGAAATTTGTTGTTC 57.451 29.630 0.00 0.00 0.00 3.18
5264 6411 7.130681 AGGGGTTTATGAAATTTGTTGTTCA 57.869 32.000 0.00 0.00 38.09 3.18
5265 6412 6.989759 AGGGGTTTATGAAATTTGTTGTTCAC 59.010 34.615 0.00 0.00 36.62 3.18
5266 6413 6.203915 GGGGTTTATGAAATTTGTTGTTCACC 59.796 38.462 0.00 0.00 36.62 4.02
5267 6414 6.989759 GGGTTTATGAAATTTGTTGTTCACCT 59.010 34.615 0.00 0.00 36.62 4.00
5268 6415 7.170828 GGGTTTATGAAATTTGTTGTTCACCTC 59.829 37.037 0.00 0.00 36.62 3.85
5269 6416 7.708752 GGTTTATGAAATTTGTTGTTCACCTCA 59.291 33.333 0.00 0.00 36.62 3.86
5270 6417 9.092876 GTTTATGAAATTTGTTGTTCACCTCAA 57.907 29.630 0.00 0.00 36.62 3.02
5271 6418 9.658799 TTTATGAAATTTGTTGTTCACCTCAAA 57.341 25.926 0.00 0.00 36.62 2.69
5272 6419 6.959671 TGAAATTTGTTGTTCACCTCAAAC 57.040 33.333 0.00 0.00 33.63 2.93
5273 6420 6.696411 TGAAATTTGTTGTTCACCTCAAACT 58.304 32.000 0.00 0.00 33.63 2.66
5274 6421 7.831753 TGAAATTTGTTGTTCACCTCAAACTA 58.168 30.769 0.00 0.00 33.63 2.24
5275 6422 7.973388 TGAAATTTGTTGTTCACCTCAAACTAG 59.027 33.333 0.00 0.00 33.63 2.57
5276 6423 5.828299 TTTGTTGTTCACCTCAAACTAGG 57.172 39.130 0.00 0.00 42.82 3.02
5277 6424 4.764050 TGTTGTTCACCTCAAACTAGGA 57.236 40.909 0.00 0.00 39.15 2.94
5278 6425 5.304686 TGTTGTTCACCTCAAACTAGGAT 57.695 39.130 0.00 0.00 39.15 3.24
5279 6426 6.428083 TGTTGTTCACCTCAAACTAGGATA 57.572 37.500 0.00 0.00 39.15 2.59
5280 6427 7.016153 TGTTGTTCACCTCAAACTAGGATAT 57.984 36.000 0.00 0.00 39.15 1.63
5281 6428 7.103641 TGTTGTTCACCTCAAACTAGGATATC 58.896 38.462 0.00 0.00 39.15 1.63
5282 6429 6.867519 TGTTCACCTCAAACTAGGATATCA 57.132 37.500 4.83 0.00 39.15 2.15
5283 6430 7.252612 TGTTCACCTCAAACTAGGATATCAA 57.747 36.000 4.83 0.00 39.15 2.57
5284 6431 7.861629 TGTTCACCTCAAACTAGGATATCAAT 58.138 34.615 4.83 0.00 39.15 2.57
5285 6432 7.770433 TGTTCACCTCAAACTAGGATATCAATG 59.230 37.037 4.83 0.00 39.15 2.82
5286 6433 7.437713 TCACCTCAAACTAGGATATCAATGT 57.562 36.000 4.83 0.00 39.15 2.71
5287 6434 7.861629 TCACCTCAAACTAGGATATCAATGTT 58.138 34.615 4.83 3.19 39.15 2.71
5288 6435 8.328758 TCACCTCAAACTAGGATATCAATGTTT 58.671 33.333 4.83 8.79 39.15 2.83
5289 6436 8.960591 CACCTCAAACTAGGATATCAATGTTTT 58.039 33.333 4.83 0.00 39.15 2.43
5300 6447 9.578576 AGGATATCAATGTTTTATACATGCAGT 57.421 29.630 4.83 0.00 46.75 4.40
5316 6463 7.807977 ACATGCAGTTAATATCAAACTAGGG 57.192 36.000 0.00 0.00 35.44 3.53
5317 6464 7.346471 ACATGCAGTTAATATCAAACTAGGGT 58.654 34.615 0.00 0.00 35.44 4.34
5318 6465 8.491134 ACATGCAGTTAATATCAAACTAGGGTA 58.509 33.333 0.00 0.00 35.44 3.69
5319 6466 9.507329 CATGCAGTTAATATCAAACTAGGGTAT 57.493 33.333 0.00 0.00 35.44 2.73
5320 6467 9.726438 ATGCAGTTAATATCAAACTAGGGTATC 57.274 33.333 0.00 0.00 35.44 2.24
5321 6468 8.710239 TGCAGTTAATATCAAACTAGGGTATCA 58.290 33.333 0.00 0.00 35.44 2.15
5322 6469 9.555727 GCAGTTAATATCAAACTAGGGTATCAA 57.444 33.333 0.00 0.00 35.44 2.57
5328 6475 6.699575 ATCAAACTAGGGTATCAATGTTGC 57.300 37.500 0.00 0.00 0.00 4.17
5329 6476 5.815581 TCAAACTAGGGTATCAATGTTGCT 58.184 37.500 0.00 0.00 0.00 3.91
5330 6477 6.953101 TCAAACTAGGGTATCAATGTTGCTA 58.047 36.000 0.00 0.00 0.00 3.49
5331 6478 6.821665 TCAAACTAGGGTATCAATGTTGCTAC 59.178 38.462 0.00 0.00 0.00 3.58
5332 6479 4.945246 ACTAGGGTATCAATGTTGCTACG 58.055 43.478 0.00 0.00 32.20 3.51
5333 6480 3.906720 AGGGTATCAATGTTGCTACGT 57.093 42.857 0.00 0.00 32.20 3.57
5334 6481 3.793559 AGGGTATCAATGTTGCTACGTC 58.206 45.455 0.00 0.00 32.20 4.34
5335 6482 2.870411 GGGTATCAATGTTGCTACGTCC 59.130 50.000 0.00 0.00 32.20 4.79
5336 6483 3.527533 GGTATCAATGTTGCTACGTCCA 58.472 45.455 0.00 0.00 32.20 4.02
5337 6484 4.127171 GGTATCAATGTTGCTACGTCCAT 58.873 43.478 0.00 0.00 32.20 3.41
5338 6485 4.024893 GGTATCAATGTTGCTACGTCCATG 60.025 45.833 0.00 0.00 32.20 3.66
5339 6486 3.052455 TCAATGTTGCTACGTCCATGT 57.948 42.857 0.00 0.00 0.00 3.21
5340 6487 4.195225 TCAATGTTGCTACGTCCATGTA 57.805 40.909 0.00 0.00 0.00 2.29
5341 6488 4.765273 TCAATGTTGCTACGTCCATGTAT 58.235 39.130 0.00 0.00 0.00 2.29
5342 6489 4.808895 TCAATGTTGCTACGTCCATGTATC 59.191 41.667 0.00 0.00 0.00 2.24
5343 6490 4.672587 ATGTTGCTACGTCCATGTATCT 57.327 40.909 0.00 0.00 0.00 1.98
5344 6491 5.784578 ATGTTGCTACGTCCATGTATCTA 57.215 39.130 0.00 0.00 0.00 1.98
5345 6492 4.928601 TGTTGCTACGTCCATGTATCTAC 58.071 43.478 0.00 0.00 0.00 2.59
5346 6493 3.891056 TGCTACGTCCATGTATCTACG 57.109 47.619 0.00 0.00 40.99 3.51
5348 6495 3.249320 TGCTACGTCCATGTATCTACGTC 59.751 47.826 2.31 0.00 44.60 4.34
5349 6496 3.364764 GCTACGTCCATGTATCTACGTCC 60.365 52.174 2.31 0.00 44.60 4.79
5350 6497 2.928334 ACGTCCATGTATCTACGTCCT 58.072 47.619 0.00 0.00 44.60 3.85
5351 6498 2.617308 ACGTCCATGTATCTACGTCCTG 59.383 50.000 0.00 0.00 44.60 3.86
5352 6499 2.617308 CGTCCATGTATCTACGTCCTGT 59.383 50.000 0.00 0.00 0.00 4.00
5353 6500 3.811497 CGTCCATGTATCTACGTCCTGTA 59.189 47.826 0.00 0.00 0.00 2.74
5354 6501 4.274214 CGTCCATGTATCTACGTCCTGTAA 59.726 45.833 0.00 0.00 31.20 2.41
5355 6502 5.048921 CGTCCATGTATCTACGTCCTGTAAT 60.049 44.000 0.00 0.00 31.20 1.89
5356 6503 6.148315 CGTCCATGTATCTACGTCCTGTAATA 59.852 42.308 0.00 0.00 31.20 0.98
5357 6504 7.148289 CGTCCATGTATCTACGTCCTGTAATAT 60.148 40.741 0.00 0.00 31.20 1.28
5358 6505 8.182881 GTCCATGTATCTACGTCCTGTAATATC 58.817 40.741 0.00 0.00 31.20 1.63
5359 6506 7.886446 TCCATGTATCTACGTCCTGTAATATCA 59.114 37.037 0.00 0.00 31.20 2.15
5360 6507 8.184848 CCATGTATCTACGTCCTGTAATATCAG 58.815 40.741 0.00 0.00 31.20 2.90
5361 6508 8.731605 CATGTATCTACGTCCTGTAATATCAGT 58.268 37.037 0.00 0.00 34.02 3.41
5362 6509 8.320396 TGTATCTACGTCCTGTAATATCAGTC 57.680 38.462 0.00 0.00 34.02 3.51
5363 6510 8.155510 TGTATCTACGTCCTGTAATATCAGTCT 58.844 37.037 0.00 0.00 34.02 3.24
5364 6511 9.001542 GTATCTACGTCCTGTAATATCAGTCTT 57.998 37.037 0.00 0.00 34.02 3.01
5365 6512 7.260558 TCTACGTCCTGTAATATCAGTCTTG 57.739 40.000 0.00 0.00 34.02 3.02
5366 6513 4.683832 ACGTCCTGTAATATCAGTCTTGC 58.316 43.478 0.00 0.00 34.02 4.01
5367 6514 4.402793 ACGTCCTGTAATATCAGTCTTGCT 59.597 41.667 0.00 0.00 34.02 3.91
5368 6515 4.742167 CGTCCTGTAATATCAGTCTTGCTG 59.258 45.833 0.00 0.00 46.34 4.41
5369 6516 5.665459 GTCCTGTAATATCAGTCTTGCTGT 58.335 41.667 0.00 0.00 45.23 4.40
5370 6517 6.109359 GTCCTGTAATATCAGTCTTGCTGTT 58.891 40.000 0.00 0.00 45.23 3.16
5371 6518 6.036517 GTCCTGTAATATCAGTCTTGCTGTTG 59.963 42.308 0.00 0.00 45.23 3.33
5372 6519 5.877012 CCTGTAATATCAGTCTTGCTGTTGT 59.123 40.000 0.00 0.00 45.23 3.32
5373 6520 7.041721 CCTGTAATATCAGTCTTGCTGTTGTA 58.958 38.462 0.00 0.00 45.23 2.41
5374 6521 7.549134 CCTGTAATATCAGTCTTGCTGTTGTAA 59.451 37.037 0.00 0.00 45.23 2.41
5375 6522 8.840833 TGTAATATCAGTCTTGCTGTTGTAAA 57.159 30.769 0.00 0.00 45.23 2.01
5376 6523 8.935844 TGTAATATCAGTCTTGCTGTTGTAAAG 58.064 33.333 0.00 0.00 45.23 1.85
5377 6524 7.986085 AATATCAGTCTTGCTGTTGTAAAGT 57.014 32.000 0.00 0.00 45.23 2.66
5378 6525 5.679734 ATCAGTCTTGCTGTTGTAAAGTG 57.320 39.130 0.00 0.00 45.23 3.16
5379 6526 4.513442 TCAGTCTTGCTGTTGTAAAGTGT 58.487 39.130 0.00 0.00 45.23 3.55
5380 6527 4.332543 TCAGTCTTGCTGTTGTAAAGTGTG 59.667 41.667 0.00 0.00 45.23 3.82
5381 6528 3.065371 AGTCTTGCTGTTGTAAAGTGTGC 59.935 43.478 0.00 0.00 0.00 4.57
5382 6529 2.031560 TCTTGCTGTTGTAAAGTGTGCG 59.968 45.455 0.00 0.00 0.00 5.34
5383 6530 0.028770 TGCTGTTGTAAAGTGTGCGC 59.971 50.000 0.00 0.00 0.00 6.09
5384 6531 0.028770 GCTGTTGTAAAGTGTGCGCA 59.971 50.000 5.66 5.66 0.00 6.09
5385 6532 1.921573 GCTGTTGTAAAGTGTGCGCAG 60.922 52.381 12.22 0.00 0.00 5.18
5386 6533 1.597195 CTGTTGTAAAGTGTGCGCAGA 59.403 47.619 12.22 6.80 0.00 4.26
5387 6534 2.217750 TGTTGTAAAGTGTGCGCAGAT 58.782 42.857 12.22 0.00 0.00 2.90
5388 6535 2.616376 TGTTGTAAAGTGTGCGCAGATT 59.384 40.909 12.22 2.33 0.00 2.40
5389 6536 3.066064 TGTTGTAAAGTGTGCGCAGATTT 59.934 39.130 12.22 10.65 0.00 2.17
5390 6537 4.273724 TGTTGTAAAGTGTGCGCAGATTTA 59.726 37.500 12.22 13.66 0.00 1.40
5391 6538 4.661993 TGTAAAGTGTGCGCAGATTTAG 57.338 40.909 12.22 0.00 0.00 1.85
5392 6539 4.062293 TGTAAAGTGTGCGCAGATTTAGT 58.938 39.130 12.22 0.58 0.00 2.24
5393 6540 4.513692 TGTAAAGTGTGCGCAGATTTAGTT 59.486 37.500 12.22 0.00 0.00 2.24
5394 6541 3.813529 AAGTGTGCGCAGATTTAGTTC 57.186 42.857 12.22 0.00 0.00 3.01
5395 6542 3.045601 AGTGTGCGCAGATTTAGTTCT 57.954 42.857 12.22 0.00 0.00 3.01
5396 6543 2.996621 AGTGTGCGCAGATTTAGTTCTC 59.003 45.455 12.22 0.00 0.00 2.87
5397 6544 2.996621 GTGTGCGCAGATTTAGTTCTCT 59.003 45.455 12.22 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.552315 TGCTTTCAGAAATGGTCCGAAC 59.448 45.455 0.00 0.00 0.00 3.95
111 113 3.763360 TGGTGAAATCACATTCATGGGAC 59.237 43.478 14.93 0.00 44.07 4.46
196 199 5.408604 GTCCTTCTTATCACGAGCTCAAAAA 59.591 40.000 15.40 0.00 0.00 1.94
197 200 4.929808 GTCCTTCTTATCACGAGCTCAAAA 59.070 41.667 15.40 0.00 0.00 2.44
208 218 5.003804 GGAGCAAAACTGTCCTTCTTATCA 58.996 41.667 0.00 0.00 0.00 2.15
214 224 2.550180 GTCTGGAGCAAAACTGTCCTTC 59.450 50.000 0.00 0.00 0.00 3.46
324 335 1.338200 ACAATCTCTTGGGAGTCACGC 60.338 52.381 0.00 0.00 40.29 5.34
334 345 3.618351 AGGCTGAATCCACAATCTCTTG 58.382 45.455 0.00 0.00 38.39 3.02
393 405 2.357009 GCGGTGTGCTAGCTAGTAGTAA 59.643 50.000 21.62 3.88 41.73 2.24
433 445 3.317150 TGTAGACGTCTCATGTTTGCAG 58.683 45.455 23.89 0.00 0.00 4.41
457 469 2.697654 GGCTGATTGATGCCTAGCTAG 58.302 52.381 14.20 14.20 45.26 3.42
458 470 1.001293 CGGCTGATTGATGCCTAGCTA 59.999 52.381 0.00 0.00 46.42 3.32
459 471 0.250209 CGGCTGATTGATGCCTAGCT 60.250 55.000 0.00 0.00 46.42 3.32
460 472 0.250038 TCGGCTGATTGATGCCTAGC 60.250 55.000 0.00 0.00 46.42 3.42
500 512 2.092049 TCCTACAGAACTCCCGCTGATA 60.092 50.000 0.00 0.00 36.07 2.15
572 587 2.195922 GGAAATGCTATTTGCTTGGCG 58.804 47.619 6.08 0.00 43.37 5.69
608 623 2.159085 AGTACAGAGGTGATTTAGCGGC 60.159 50.000 0.00 0.00 0.00 6.53
671 686 1.675641 GCGCCCATGGTTTCTCACT 60.676 57.895 11.73 0.00 0.00 3.41
704 719 2.546778 GGCCGTATGAATCGTGAAGAA 58.453 47.619 0.00 0.00 0.00 2.52
706 721 0.852777 CGGCCGTATGAATCGTGAAG 59.147 55.000 19.50 0.00 0.00 3.02
715 730 1.078988 GTTGTTCCCGGCCGTATGA 60.079 57.895 26.12 14.80 0.00 2.15
719 734 2.406002 ATCTTGTTGTTCCCGGCCGT 62.406 55.000 26.12 0.00 0.00 5.68
720 735 1.644786 GATCTTGTTGTTCCCGGCCG 61.645 60.000 21.04 21.04 0.00 6.13
794 809 3.058708 CGAGGCGTAGAATATGTTCGGTA 60.059 47.826 0.00 0.00 39.38 4.02
814 829 0.035598 TCGACCATCCTTTTTGCCGA 59.964 50.000 0.00 0.00 0.00 5.54
836 888 1.176619 GGTGTTTGTACCCCACAGGC 61.177 60.000 8.37 0.00 40.58 4.85
907 964 0.668401 GTGTTCCATGCAGGCAAAGC 60.668 55.000 0.00 0.00 37.29 3.51
908 965 0.387622 CGTGTTCCATGCAGGCAAAG 60.388 55.000 0.00 0.00 37.29 2.77
909 966 1.659233 CGTGTTCCATGCAGGCAAA 59.341 52.632 0.00 0.00 37.29 3.68
910 967 2.918345 GCGTGTTCCATGCAGGCAA 61.918 57.895 10.40 0.00 44.78 4.52
911 968 3.364441 GCGTGTTCCATGCAGGCA 61.364 61.111 10.40 0.00 44.78 4.75
912 969 4.120331 GGCGTGTTCCATGCAGGC 62.120 66.667 10.30 7.66 46.93 4.85
913 970 2.672651 TGGCGTGTTCCATGCAGG 60.673 61.111 10.30 0.00 46.93 4.85
914 971 1.642037 CTCTGGCGTGTTCCATGCAG 61.642 60.000 10.30 6.26 46.93 4.41
1004 1061 3.308530 GTTTAACTTGCTGTGATGGTGC 58.691 45.455 0.00 0.00 0.00 5.01
1052 1115 0.031585 CACGAGACAAGTTCGGGACA 59.968 55.000 0.00 0.00 43.93 4.02
1094 1157 7.800300 AAATAAGTCTCCTCTACTTGGTCTT 57.200 36.000 0.00 0.00 37.71 3.01
1216 1288 0.846870 AACCCAAGCTAAGGAGGCCT 60.847 55.000 3.86 3.86 33.87 5.19
1305 1378 1.133869 CGGCCCGATTGAAAACGAC 59.866 57.895 0.00 0.00 0.00 4.34
1330 1403 1.092345 GTGCCTAGCTAGCTGGTTGC 61.092 60.000 27.68 22.26 43.29 4.17
1335 1408 1.591059 CAGCGTGCCTAGCTAGCTG 60.591 63.158 27.68 15.38 45.91 4.24
1359 1436 2.843701 GCTATAGCTGCATTGGTCAGT 58.156 47.619 17.75 0.00 38.21 3.41
1429 1506 1.001248 TTGGACCCCTCCTCTACCG 59.999 63.158 0.00 0.00 37.48 4.02
1475 1561 2.656069 GCTAGTGGCACGAAGGGGA 61.656 63.158 19.96 0.00 41.35 4.81
1539 1625 8.415950 TCAGCTAAAATGGTTTCCTGAATTTA 57.584 30.769 0.00 0.00 34.69 1.40
1540 1626 7.301868 TCAGCTAAAATGGTTTCCTGAATTT 57.698 32.000 0.00 0.00 34.69 1.82
1541 1627 6.573094 GCTCAGCTAAAATGGTTTCCTGAATT 60.573 38.462 0.00 0.00 36.03 2.17
1542 1628 5.105595 GCTCAGCTAAAATGGTTTCCTGAAT 60.106 40.000 0.00 0.00 36.03 2.57
1543 1629 4.218417 GCTCAGCTAAAATGGTTTCCTGAA 59.782 41.667 0.00 0.00 36.03 3.02
1544 1630 3.758554 GCTCAGCTAAAATGGTTTCCTGA 59.241 43.478 0.00 0.00 35.56 3.86
1545 1631 3.507233 TGCTCAGCTAAAATGGTTTCCTG 59.493 43.478 0.00 0.00 31.96 3.86
1546 1632 3.766545 TGCTCAGCTAAAATGGTTTCCT 58.233 40.909 0.00 0.00 0.00 3.36
1547 1633 4.519540 TTGCTCAGCTAAAATGGTTTCC 57.480 40.909 0.00 0.00 0.00 3.13
1548 1634 7.386025 AGAAAATTGCTCAGCTAAAATGGTTTC 59.614 33.333 0.00 0.00 0.00 2.78
1549 1635 7.219322 AGAAAATTGCTCAGCTAAAATGGTTT 58.781 30.769 0.00 0.00 0.00 3.27
1550 1636 6.762333 AGAAAATTGCTCAGCTAAAATGGTT 58.238 32.000 0.00 0.00 0.00 3.67
1551 1637 6.210185 AGAGAAAATTGCTCAGCTAAAATGGT 59.790 34.615 3.48 0.00 34.85 3.55
1552 1638 6.628185 AGAGAAAATTGCTCAGCTAAAATGG 58.372 36.000 3.48 0.00 34.85 3.16
1553 1639 8.530269 AAAGAGAAAATTGCTCAGCTAAAATG 57.470 30.769 3.48 0.00 34.85 2.32
1554 1640 9.551734 AAAAAGAGAAAATTGCTCAGCTAAAAT 57.448 25.926 3.48 0.00 34.85 1.82
1555 1641 8.947055 AAAAAGAGAAAATTGCTCAGCTAAAA 57.053 26.923 3.48 0.00 34.85 1.52
1579 1665 5.131142 TGATGGCCAGGGTTTAAAAGAAAAA 59.869 36.000 13.05 0.00 0.00 1.94
1580 1666 4.656112 TGATGGCCAGGGTTTAAAAGAAAA 59.344 37.500 13.05 0.00 0.00 2.29
1581 1667 4.227197 TGATGGCCAGGGTTTAAAAGAAA 58.773 39.130 13.05 0.00 0.00 2.52
1582 1668 3.850752 TGATGGCCAGGGTTTAAAAGAA 58.149 40.909 13.05 0.00 0.00 2.52
1583 1669 3.534357 TGATGGCCAGGGTTTAAAAGA 57.466 42.857 13.05 0.00 0.00 2.52
1584 1670 4.824479 ATTGATGGCCAGGGTTTAAAAG 57.176 40.909 13.05 0.00 0.00 2.27
1585 1671 4.594920 TGAATTGATGGCCAGGGTTTAAAA 59.405 37.500 13.05 0.00 0.00 1.52
1586 1672 4.163427 TGAATTGATGGCCAGGGTTTAAA 58.837 39.130 13.05 0.00 0.00 1.52
1587 1673 3.768757 CTGAATTGATGGCCAGGGTTTAA 59.231 43.478 13.05 0.00 0.00 1.52
1588 1674 3.364549 CTGAATTGATGGCCAGGGTTTA 58.635 45.455 13.05 0.00 0.00 2.01
1589 1675 2.181975 CTGAATTGATGGCCAGGGTTT 58.818 47.619 13.05 2.13 0.00 3.27
1590 1676 1.620524 CCTGAATTGATGGCCAGGGTT 60.621 52.381 13.05 3.10 41.76 4.11
1591 1677 0.032813 CCTGAATTGATGGCCAGGGT 60.033 55.000 13.05 0.00 41.76 4.34
1592 1678 0.259647 TCCTGAATTGATGGCCAGGG 59.740 55.000 13.05 3.19 44.66 4.45
1593 1679 2.148446 TTCCTGAATTGATGGCCAGG 57.852 50.000 13.05 3.99 45.63 4.45
1594 1680 4.748277 ATTTTCCTGAATTGATGGCCAG 57.252 40.909 13.05 0.00 0.00 4.85
1595 1681 6.811634 AATATTTTCCTGAATTGATGGCCA 57.188 33.333 8.56 8.56 0.00 5.36
1596 1682 9.264719 CTAAAATATTTTCCTGAATTGATGGCC 57.735 33.333 16.56 0.00 0.00 5.36
1597 1683 8.768019 GCTAAAATATTTTCCTGAATTGATGGC 58.232 33.333 16.56 0.00 0.00 4.40
1723 1849 1.596603 TCAAGTGGTGTGCATCAGTG 58.403 50.000 0.00 0.00 0.00 3.66
1724 1850 2.039480 AGATCAAGTGGTGTGCATCAGT 59.961 45.455 0.00 0.00 0.00 3.41
1725 1851 2.708051 AGATCAAGTGGTGTGCATCAG 58.292 47.619 0.00 0.00 0.00 2.90
1726 1852 2.865119 AGATCAAGTGGTGTGCATCA 57.135 45.000 0.00 0.00 0.00 3.07
1727 1853 3.503363 TCAAAGATCAAGTGGTGTGCATC 59.497 43.478 0.00 0.00 0.00 3.91
1728 1854 3.489355 TCAAAGATCAAGTGGTGTGCAT 58.511 40.909 0.00 0.00 0.00 3.96
1746 1872 1.887854 TGTAGATGGACGACGGTTCAA 59.112 47.619 0.00 0.00 34.65 2.69
1781 1907 1.289066 CGTCTCTCGCCCACTTGAA 59.711 57.895 0.00 0.00 0.00 2.69
1782 1908 2.962569 CGTCTCTCGCCCACTTGA 59.037 61.111 0.00 0.00 0.00 3.02
1823 1950 2.626743 GCATTGCCTGATGCCTCTATTT 59.373 45.455 0.00 0.00 45.16 1.40
1885 2012 5.888161 CCAAGGGTATTTAGCATCTGTTCTT 59.112 40.000 0.00 0.00 0.00 2.52
1927 2054 1.447643 GTGGGGATGATGCGCTAGT 59.552 57.895 9.73 0.00 0.00 2.57
1965 2096 1.679153 GTTGGTGGGTGTTCGTTCATT 59.321 47.619 0.00 0.00 0.00 2.57
2053 2186 0.243095 GTATAGTGGTCGATCGGGGC 59.757 60.000 16.41 6.01 0.00 5.80
2103 2236 1.873270 AATTCAAAGGCGGCCGGTTC 61.873 55.000 29.38 10.40 0.00 3.62
2178 2311 7.148787 GCAGCAGTATTTATATCTCGTTGTACC 60.149 40.741 0.00 0.00 0.00 3.34
2179 2312 7.595502 AGCAGCAGTATTTATATCTCGTTGTAC 59.404 37.037 0.00 0.00 0.00 2.90
2180 2313 7.595130 CAGCAGCAGTATTTATATCTCGTTGTA 59.405 37.037 0.00 0.00 0.00 2.41
2181 2314 6.422100 CAGCAGCAGTATTTATATCTCGTTGT 59.578 38.462 0.00 0.00 0.00 3.32
2183 2316 5.406780 GCAGCAGCAGTATTTATATCTCGTT 59.593 40.000 0.00 0.00 41.58 3.85
2186 2319 5.163874 GCAGCAGCAGCAGTATTTATATCTC 60.164 44.000 4.63 0.00 45.49 2.75
2187 2320 4.694509 GCAGCAGCAGCAGTATTTATATCT 59.305 41.667 4.63 0.00 45.49 1.98
2188 2321 4.694509 AGCAGCAGCAGCAGTATTTATATC 59.305 41.667 12.92 0.00 45.49 1.63
2189 2322 4.454847 CAGCAGCAGCAGCAGTATTTATAT 59.545 41.667 12.92 0.00 45.49 0.86
2190 2323 3.811497 CAGCAGCAGCAGCAGTATTTATA 59.189 43.478 12.92 0.00 45.49 0.98
2191 2324 2.617308 CAGCAGCAGCAGCAGTATTTAT 59.383 45.455 12.92 0.00 45.49 1.40
2192 2325 2.011947 CAGCAGCAGCAGCAGTATTTA 58.988 47.619 12.92 0.00 45.49 1.40
2193 2326 0.809385 CAGCAGCAGCAGCAGTATTT 59.191 50.000 12.92 0.00 45.49 1.40
2194 2327 2.478989 CAGCAGCAGCAGCAGTATT 58.521 52.632 12.92 0.00 45.49 1.89
2195 2328 4.220413 CAGCAGCAGCAGCAGTAT 57.780 55.556 12.92 0.00 45.49 2.12
2201 2334 0.179081 TATCTCAGCAGCAGCAGCAG 60.179 55.000 12.92 3.97 45.49 4.24
2202 2335 0.461516 GTATCTCAGCAGCAGCAGCA 60.462 55.000 12.92 0.00 45.49 4.41
2203 2336 1.159098 GGTATCTCAGCAGCAGCAGC 61.159 60.000 3.17 0.46 45.49 5.25
2204 2337 0.177373 TGGTATCTCAGCAGCAGCAG 59.823 55.000 3.17 0.00 45.49 4.24
2206 2339 1.964552 AATGGTATCTCAGCAGCAGC 58.035 50.000 0.00 0.00 38.24 5.25
2207 2340 4.039004 AGTCTAATGGTATCTCAGCAGCAG 59.961 45.833 0.00 0.00 38.24 4.24
2210 2343 4.749099 GCAAGTCTAATGGTATCTCAGCAG 59.251 45.833 0.00 0.00 38.24 4.24
2213 2346 5.752472 CAGTGCAAGTCTAATGGTATCTCAG 59.248 44.000 0.00 0.00 0.00 3.35
2214 2347 5.187772 ACAGTGCAAGTCTAATGGTATCTCA 59.812 40.000 0.00 0.00 0.00 3.27
2243 2402 2.822561 CAGTGAGACCACAGCTAGAAGA 59.177 50.000 0.00 0.00 45.54 2.87
2244 2403 3.229276 CAGTGAGACCACAGCTAGAAG 57.771 52.381 0.00 0.00 45.54 2.85
2312 2480 3.771160 CGCGCTCCCCTGGTAGTT 61.771 66.667 5.56 0.00 0.00 2.24
2432 2603 2.826428 TGATCGCTGTAGCATCTTTCC 58.174 47.619 4.59 0.00 42.21 3.13
2445 2616 1.227263 GGCGTACCACATGATCGCT 60.227 57.895 0.00 0.00 45.01 4.93
2477 2648 0.179067 GGTCAGTTTGTCCCGTCACA 60.179 55.000 0.00 0.00 0.00 3.58
2496 2667 2.260869 CGGCACACCAAAGGTCCAG 61.261 63.158 0.00 0.00 31.02 3.86
2502 2673 3.673484 CCCTGCGGCACACCAAAG 61.673 66.667 0.00 0.00 34.57 2.77
2759 2930 3.044059 GAACAGTGCGAGGCATGCC 62.044 63.158 30.12 30.12 41.91 4.40
2769 2940 1.160329 ACGAGCTTGGTGAACAGTGC 61.160 55.000 5.79 0.00 0.00 4.40
2788 2960 2.161030 TGCATGCAGCTGTGAATTACA 58.839 42.857 18.46 2.74 45.94 2.41
2981 3153 2.004017 TCGTCGTTGCAGAAAGTTTGT 58.996 42.857 0.00 0.00 0.00 2.83
2999 3172 2.868583 CCACCTAGCACAGATCAAATCG 59.131 50.000 0.00 0.00 0.00 3.34
3017 3191 1.523934 CGGTAAGTTCACGTTCACCAC 59.476 52.381 0.00 0.00 0.00 4.16
3593 3901 4.210304 GCGTTGGCGATGTCGAGC 62.210 66.667 6.60 0.00 43.02 5.03
3748 4056 1.916697 GAGGTTGAGCTTGAAGCCGC 61.917 60.000 14.45 7.13 43.77 6.53
3812 4120 3.807538 GGCAGCAGCATGGACACG 61.808 66.667 2.65 0.00 44.61 4.49
4340 4655 9.029243 CACTCAAGTAGTTATCATGAGAACATC 57.971 37.037 29.36 21.63 39.85 3.06
4393 4708 5.464030 AAGTGCAGCAAGAAGAAATTCAT 57.536 34.783 0.00 0.00 0.00 2.57
4429 4744 3.632145 TCTCTCGCAAAAAGAAAAAGGCT 59.368 39.130 0.00 0.00 0.00 4.58
4438 4753 4.833126 TCGAAAAGTTCTCTCGCAAAAAG 58.167 39.130 0.00 0.00 32.66 2.27
4444 4759 5.744345 TGAATAGATCGAAAAGTTCTCTCGC 59.256 40.000 0.00 0.00 31.76 5.03
4445 4760 7.922505 ATGAATAGATCGAAAAGTTCTCTCG 57.077 36.000 0.00 0.00 31.76 4.04
4503 4829 3.484407 AGAGATGCATAATGTCAAGGCC 58.516 45.455 0.00 0.00 30.83 5.19
4532 5056 1.816224 ACAGAGTGGTGCAACGTTTTT 59.184 42.857 0.00 0.00 38.12 1.94
4561 5112 2.514458 ATCGAAGCCCATGTTTTCCT 57.486 45.000 0.00 0.00 0.00 3.36
4592 5143 2.038863 TTCTCCCTAGGGAAGTTGCA 57.961 50.000 30.59 7.51 44.66 4.08
4602 5153 7.716612 ACTTTGTCAAATGTTTTTCTCCCTAG 58.283 34.615 0.00 0.00 0.00 3.02
4643 5476 3.338249 GTCAAAGCTCATGCCTTACTCA 58.662 45.455 0.00 0.00 40.80 3.41
4654 5763 7.870826 TCTTTTAATGAAATCGTCAAAGCTCA 58.129 30.769 0.00 0.00 40.50 4.26
4760 5870 5.540719 TCGGTAAATTTGAGGGACCAAAAAT 59.459 36.000 0.00 0.00 39.20 1.82
4820 5932 6.595716 CGTTTCTGAAAGATGAGGGACTAAAT 59.404 38.462 2.48 0.00 46.36 1.40
4840 5952 5.688621 GGTTTGGACAAAACTTATCCGTTTC 59.311 40.000 5.44 0.00 46.27 2.78
4851 5963 3.822167 TCTAATCCGGGTTTGGACAAAAC 59.178 43.478 4.62 4.28 46.32 2.43
4863 5975 1.049402 GTTCCCCTCTCTAATCCGGG 58.951 60.000 0.00 0.00 36.42 5.73
4913 6026 0.606944 AAAAATGGCCGTCCTACGCA 60.607 50.000 0.00 0.00 40.91 5.24
4914 6027 2.177044 AAAAATGGCCGTCCTACGC 58.823 52.632 0.00 0.00 40.91 4.42
4940 6056 3.360867 CATATGAGGGGATAGAGCTCGT 58.639 50.000 8.37 0.50 0.00 4.18
4942 6058 3.102972 TGCATATGAGGGGATAGAGCTC 58.897 50.000 5.27 5.27 0.00 4.09
4952 6068 5.869579 ACCTATAGTTTGTGCATATGAGGG 58.130 41.667 6.97 0.00 0.00 4.30
4962 6078 9.988815 AAGCATAAGATCTACCTATAGTTTGTG 57.011 33.333 0.00 0.00 0.00 3.33
4998 6115 6.098266 GCTTGGGGGTGTTGAATAGATTTAAT 59.902 38.462 0.00 0.00 0.00 1.40
5018 6165 2.359975 GGGTCTTCGTGGGCTTGG 60.360 66.667 0.00 0.00 0.00 3.61
5061 6208 3.034635 TGGGGTTTTAACAGTGTGCAAT 58.965 40.909 0.00 0.00 0.00 3.56
5062 6209 2.457598 TGGGGTTTTAACAGTGTGCAA 58.542 42.857 0.00 0.00 0.00 4.08
5143 6290 4.931601 CGTACACGGATAGCCTGTATAGTA 59.068 45.833 10.98 1.50 33.46 1.82
5151 6298 2.434428 CCTATCGTACACGGATAGCCT 58.566 52.381 9.55 0.00 40.29 4.58
5198 6345 9.513906 TCACTAGAAACATGTCATAAAAATGGA 57.486 29.630 0.00 0.00 0.00 3.41
5199 6346 9.778993 CTCACTAGAAACATGTCATAAAAATGG 57.221 33.333 0.00 0.00 0.00 3.16
5202 6349 9.554395 TGTCTCACTAGAAACATGTCATAAAAA 57.446 29.630 0.00 0.00 32.16 1.94
5203 6350 9.208022 CTGTCTCACTAGAAACATGTCATAAAA 57.792 33.333 0.00 0.00 32.16 1.52
5204 6351 7.819415 CCTGTCTCACTAGAAACATGTCATAAA 59.181 37.037 0.00 0.00 32.16 1.40
5205 6352 7.323420 CCTGTCTCACTAGAAACATGTCATAA 58.677 38.462 0.00 0.00 32.16 1.90
5206 6353 6.127338 CCCTGTCTCACTAGAAACATGTCATA 60.127 42.308 0.00 0.00 32.16 2.15
5207 6354 5.337894 CCCTGTCTCACTAGAAACATGTCAT 60.338 44.000 0.00 0.00 32.16 3.06
5208 6355 4.021104 CCCTGTCTCACTAGAAACATGTCA 60.021 45.833 0.00 0.00 32.16 3.58
5209 6356 4.021016 ACCCTGTCTCACTAGAAACATGTC 60.021 45.833 0.00 0.00 32.16 3.06
5210 6357 3.904339 ACCCTGTCTCACTAGAAACATGT 59.096 43.478 0.00 0.00 32.16 3.21
5211 6358 4.543590 ACCCTGTCTCACTAGAAACATG 57.456 45.455 0.00 0.00 32.16 3.21
5212 6359 7.973048 TTATACCCTGTCTCACTAGAAACAT 57.027 36.000 0.00 0.00 32.16 2.71
5213 6360 7.973048 ATTATACCCTGTCTCACTAGAAACA 57.027 36.000 0.00 0.00 32.16 2.83
5216 6363 9.144298 CCTTAATTATACCCTGTCTCACTAGAA 57.856 37.037 0.00 0.00 32.16 2.10
5217 6364 7.728981 CCCTTAATTATACCCTGTCTCACTAGA 59.271 40.741 0.00 0.00 0.00 2.43
5218 6365 7.038941 CCCCTTAATTATACCCTGTCTCACTAG 60.039 44.444 0.00 0.00 0.00 2.57
5219 6366 6.785963 CCCCTTAATTATACCCTGTCTCACTA 59.214 42.308 0.00 0.00 0.00 2.74
5220 6367 5.607171 CCCCTTAATTATACCCTGTCTCACT 59.393 44.000 0.00 0.00 0.00 3.41
5221 6368 5.368816 ACCCCTTAATTATACCCTGTCTCAC 59.631 44.000 0.00 0.00 0.00 3.51
5222 6369 5.544682 ACCCCTTAATTATACCCTGTCTCA 58.455 41.667 0.00 0.00 0.00 3.27
5223 6370 6.511017 AACCCCTTAATTATACCCTGTCTC 57.489 41.667 0.00 0.00 0.00 3.36
5224 6371 6.920695 AAACCCCTTAATTATACCCTGTCT 57.079 37.500 0.00 0.00 0.00 3.41
5225 6372 8.442374 TCATAAACCCCTTAATTATACCCTGTC 58.558 37.037 0.00 0.00 0.00 3.51
5226 6373 8.352808 TCATAAACCCCTTAATTATACCCTGT 57.647 34.615 0.00 0.00 0.00 4.00
5227 6374 9.649316 TTTCATAAACCCCTTAATTATACCCTG 57.351 33.333 0.00 0.00 0.00 4.45
5237 6384 9.549078 GAACAACAAATTTCATAAACCCCTTAA 57.451 29.630 0.00 0.00 0.00 1.85
5238 6385 8.705594 TGAACAACAAATTTCATAAACCCCTTA 58.294 29.630 0.00 0.00 0.00 2.69
5239 6386 7.497579 GTGAACAACAAATTTCATAAACCCCTT 59.502 33.333 0.00 0.00 34.34 3.95
5240 6387 6.989759 GTGAACAACAAATTTCATAAACCCCT 59.010 34.615 0.00 0.00 34.34 4.79
5241 6388 6.203915 GGTGAACAACAAATTTCATAAACCCC 59.796 38.462 0.00 0.00 34.34 4.95
5242 6389 6.989759 AGGTGAACAACAAATTTCATAAACCC 59.010 34.615 0.00 0.00 34.34 4.11
5243 6390 7.708752 TGAGGTGAACAACAAATTTCATAAACC 59.291 33.333 0.00 0.00 34.34 3.27
5244 6391 8.641499 TGAGGTGAACAACAAATTTCATAAAC 57.359 30.769 0.00 0.00 34.34 2.01
5245 6392 9.658799 TTTGAGGTGAACAACAAATTTCATAAA 57.341 25.926 0.00 0.00 34.34 1.40
5246 6393 9.092876 GTTTGAGGTGAACAACAAATTTCATAA 57.907 29.630 0.00 0.00 34.34 1.90
5247 6394 8.474025 AGTTTGAGGTGAACAACAAATTTCATA 58.526 29.630 0.00 0.00 34.34 2.15
5248 6395 7.330262 AGTTTGAGGTGAACAACAAATTTCAT 58.670 30.769 0.00 0.00 34.34 2.57
5249 6396 6.696411 AGTTTGAGGTGAACAACAAATTTCA 58.304 32.000 0.00 0.00 35.31 2.69
5250 6397 7.435192 CCTAGTTTGAGGTGAACAACAAATTTC 59.565 37.037 0.00 0.00 35.31 2.17
5251 6398 7.123547 TCCTAGTTTGAGGTGAACAACAAATTT 59.876 33.333 0.00 0.00 37.88 1.82
5252 6399 6.605594 TCCTAGTTTGAGGTGAACAACAAATT 59.394 34.615 0.00 0.00 37.88 1.82
5253 6400 6.126409 TCCTAGTTTGAGGTGAACAACAAAT 58.874 36.000 0.00 0.00 37.88 2.32
5254 6401 5.502079 TCCTAGTTTGAGGTGAACAACAAA 58.498 37.500 0.00 0.00 37.88 2.83
5255 6402 5.105567 TCCTAGTTTGAGGTGAACAACAA 57.894 39.130 0.00 0.00 37.88 2.83
5256 6403 4.764050 TCCTAGTTTGAGGTGAACAACA 57.236 40.909 0.00 0.00 37.88 3.33
5257 6404 7.103641 TGATATCCTAGTTTGAGGTGAACAAC 58.896 38.462 0.00 0.00 37.88 3.32
5258 6405 7.252612 TGATATCCTAGTTTGAGGTGAACAA 57.747 36.000 0.00 0.00 37.88 2.83
5259 6406 6.867519 TGATATCCTAGTTTGAGGTGAACA 57.132 37.500 0.00 0.00 37.88 3.18
5260 6407 7.770897 ACATTGATATCCTAGTTTGAGGTGAAC 59.229 37.037 0.00 0.00 37.88 3.18
5261 6408 7.861629 ACATTGATATCCTAGTTTGAGGTGAA 58.138 34.615 0.00 0.00 37.88 3.18
5262 6409 7.437713 ACATTGATATCCTAGTTTGAGGTGA 57.562 36.000 0.00 0.00 37.88 4.02
5263 6410 8.511604 AAACATTGATATCCTAGTTTGAGGTG 57.488 34.615 12.75 0.00 37.88 4.00
5290 6437 9.507329 CCCTAGTTTGATATTAACTGCATGTAT 57.493 33.333 12.11 0.00 36.56 2.29
5291 6438 8.491134 ACCCTAGTTTGATATTAACTGCATGTA 58.509 33.333 12.11 0.00 36.56 2.29
5292 6439 7.346471 ACCCTAGTTTGATATTAACTGCATGT 58.654 34.615 12.11 0.00 36.56 3.21
5293 6440 7.807977 ACCCTAGTTTGATATTAACTGCATG 57.192 36.000 12.11 0.00 36.56 4.06
5294 6441 9.726438 GATACCCTAGTTTGATATTAACTGCAT 57.274 33.333 12.11 0.00 36.56 3.96
5295 6442 8.710239 TGATACCCTAGTTTGATATTAACTGCA 58.290 33.333 12.11 0.00 36.56 4.41
5296 6443 9.555727 TTGATACCCTAGTTTGATATTAACTGC 57.444 33.333 12.11 0.00 36.56 4.40
5302 6449 8.850156 GCAACATTGATACCCTAGTTTGATATT 58.150 33.333 0.00 0.00 0.00 1.28
5303 6450 8.220559 AGCAACATTGATACCCTAGTTTGATAT 58.779 33.333 0.00 0.00 0.00 1.63
5304 6451 7.573710 AGCAACATTGATACCCTAGTTTGATA 58.426 34.615 0.00 0.00 0.00 2.15
5305 6452 6.426587 AGCAACATTGATACCCTAGTTTGAT 58.573 36.000 0.00 0.00 0.00 2.57
5306 6453 5.815581 AGCAACATTGATACCCTAGTTTGA 58.184 37.500 0.00 0.00 0.00 2.69
5307 6454 6.238103 CGTAGCAACATTGATACCCTAGTTTG 60.238 42.308 12.97 0.00 44.72 2.93
5308 6455 5.815740 CGTAGCAACATTGATACCCTAGTTT 59.184 40.000 12.97 0.00 44.72 2.66
5309 6456 5.105064 ACGTAGCAACATTGATACCCTAGTT 60.105 40.000 12.97 0.00 44.72 2.24
5310 6457 4.404715 ACGTAGCAACATTGATACCCTAGT 59.595 41.667 12.97 4.12 44.72 2.57
5311 6458 4.945246 ACGTAGCAACATTGATACCCTAG 58.055 43.478 12.97 3.59 44.72 3.02
5312 6459 4.202182 GGACGTAGCAACATTGATACCCTA 60.202 45.833 12.97 0.00 44.72 3.53
5313 6460 3.431766 GGACGTAGCAACATTGATACCCT 60.432 47.826 12.97 0.70 44.72 4.34
5314 6461 2.870411 GGACGTAGCAACATTGATACCC 59.130 50.000 12.97 6.92 44.72 3.69
5315 6462 3.527533 TGGACGTAGCAACATTGATACC 58.472 45.455 12.97 2.20 44.72 2.73
5316 6463 4.570772 ACATGGACGTAGCAACATTGATAC 59.429 41.667 9.47 9.47 44.26 2.24
5317 6464 4.765273 ACATGGACGTAGCAACATTGATA 58.235 39.130 0.00 0.00 0.00 2.15
5318 6465 3.609853 ACATGGACGTAGCAACATTGAT 58.390 40.909 0.00 0.00 0.00 2.57
5319 6466 3.052455 ACATGGACGTAGCAACATTGA 57.948 42.857 0.00 0.00 0.00 2.57
5320 6467 4.811024 AGATACATGGACGTAGCAACATTG 59.189 41.667 0.00 0.00 30.09 2.82
5321 6468 5.023533 AGATACATGGACGTAGCAACATT 57.976 39.130 0.00 0.00 30.09 2.71
5322 6469 4.672587 AGATACATGGACGTAGCAACAT 57.327 40.909 0.00 0.00 30.09 2.71
5323 6470 4.496840 CGTAGATACATGGACGTAGCAACA 60.497 45.833 0.00 0.00 30.09 3.33
5324 6471 3.973135 CGTAGATACATGGACGTAGCAAC 59.027 47.826 0.00 0.00 30.09 4.17
5325 6472 3.628942 ACGTAGATACATGGACGTAGCAA 59.371 43.478 9.32 0.00 45.97 3.91
5326 6473 3.208594 ACGTAGATACATGGACGTAGCA 58.791 45.455 9.32 0.00 45.97 3.49
5327 6474 3.892918 ACGTAGATACATGGACGTAGC 57.107 47.619 9.32 0.00 45.97 3.58
5331 6478 2.617308 ACAGGACGTAGATACATGGACG 59.383 50.000 0.00 1.35 41.02 4.79
5332 6479 5.762825 TTACAGGACGTAGATACATGGAC 57.237 43.478 0.00 0.00 0.00 4.02
5333 6480 7.886446 TGATATTACAGGACGTAGATACATGGA 59.114 37.037 0.00 0.00 0.00 3.41
5334 6481 8.051901 TGATATTACAGGACGTAGATACATGG 57.948 38.462 0.00 0.00 0.00 3.66
5335 6482 8.731605 ACTGATATTACAGGACGTAGATACATG 58.268 37.037 0.00 0.00 41.59 3.21
5336 6483 8.865420 ACTGATATTACAGGACGTAGATACAT 57.135 34.615 0.00 0.00 41.59 2.29
5337 6484 8.155510 AGACTGATATTACAGGACGTAGATACA 58.844 37.037 0.00 0.00 41.59 2.29
5338 6485 8.550710 AGACTGATATTACAGGACGTAGATAC 57.449 38.462 0.00 0.00 41.59 2.24
5339 6486 9.000486 CAAGACTGATATTACAGGACGTAGATA 58.000 37.037 0.00 0.00 41.59 1.98
5340 6487 7.522399 GCAAGACTGATATTACAGGACGTAGAT 60.522 40.741 0.00 0.00 41.59 1.98
5341 6488 6.238676 GCAAGACTGATATTACAGGACGTAGA 60.239 42.308 0.00 0.00 41.59 2.59
5342 6489 5.915758 GCAAGACTGATATTACAGGACGTAG 59.084 44.000 0.00 0.00 41.59 3.51
5343 6490 5.593095 AGCAAGACTGATATTACAGGACGTA 59.407 40.000 0.00 0.00 41.59 3.57
5344 6491 4.402793 AGCAAGACTGATATTACAGGACGT 59.597 41.667 0.00 0.00 41.59 4.34
5345 6492 4.938080 AGCAAGACTGATATTACAGGACG 58.062 43.478 0.00 0.00 41.59 4.79
5359 6506 3.065371 GCACACTTTACAACAGCAAGACT 59.935 43.478 0.00 0.00 0.00 3.24
5360 6507 3.363178 GCACACTTTACAACAGCAAGAC 58.637 45.455 0.00 0.00 0.00 3.01
5361 6508 2.031560 CGCACACTTTACAACAGCAAGA 59.968 45.455 0.00 0.00 0.00 3.02
5362 6509 2.375110 CGCACACTTTACAACAGCAAG 58.625 47.619 0.00 0.00 0.00 4.01
5363 6510 1.532921 GCGCACACTTTACAACAGCAA 60.533 47.619 0.30 0.00 0.00 3.91
5364 6511 0.028770 GCGCACACTTTACAACAGCA 59.971 50.000 0.30 0.00 0.00 4.41
5365 6512 0.028770 TGCGCACACTTTACAACAGC 59.971 50.000 5.66 0.00 0.00 4.40
5366 6513 1.597195 TCTGCGCACACTTTACAACAG 59.403 47.619 5.66 0.00 0.00 3.16
5367 6514 1.657822 TCTGCGCACACTTTACAACA 58.342 45.000 5.66 0.00 0.00 3.33
5368 6515 2.969443 ATCTGCGCACACTTTACAAC 57.031 45.000 5.66 0.00 0.00 3.32
5369 6516 3.980646 AAATCTGCGCACACTTTACAA 57.019 38.095 5.66 0.00 0.00 2.41
5370 6517 4.062293 ACTAAATCTGCGCACACTTTACA 58.938 39.130 5.66 0.00 0.00 2.41
5371 6518 4.663636 ACTAAATCTGCGCACACTTTAC 57.336 40.909 5.66 0.00 0.00 2.01
5372 6519 4.994852 AGAACTAAATCTGCGCACACTTTA 59.005 37.500 5.66 9.81 0.00 1.85
5373 6520 3.815401 AGAACTAAATCTGCGCACACTTT 59.185 39.130 5.66 9.12 0.00 2.66
5374 6521 3.403038 AGAACTAAATCTGCGCACACTT 58.597 40.909 5.66 0.00 0.00 3.16
5375 6522 2.996621 GAGAACTAAATCTGCGCACACT 59.003 45.455 5.66 0.00 0.00 3.55
5376 6523 2.996621 AGAGAACTAAATCTGCGCACAC 59.003 45.455 5.66 0.00 0.00 3.82
5377 6524 3.319137 AGAGAACTAAATCTGCGCACA 57.681 42.857 5.66 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.