Multiple sequence alignment - TraesCS1D01G264100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G264100 chr1D 100.000 6629 0 0 1 6629 359844307 359837679 0.000000e+00 12242.0
1 TraesCS1D01G264100 chr1B 94.600 5000 154 40 1370 6346 481867275 481862369 0.000000e+00 7631.0
2 TraesCS1D01G264100 chr1B 95.291 1338 53 8 1 1330 481868607 481867272 0.000000e+00 2113.0
3 TraesCS1D01G264100 chr1A 92.540 5201 270 58 758 5906 459312833 459307699 0.000000e+00 7347.0
4 TraesCS1D01G264100 chr1A 94.625 707 30 4 1 700 459313537 459312832 0.000000e+00 1088.0
5 TraesCS1D01G264100 chr1A 87.313 268 15 6 6089 6346 459307485 459307227 8.410000e-74 289.0
6 TraesCS1D01G264100 chr1A 86.076 79 9 2 3835 3912 494445067 494445144 4.260000e-12 84.2
7 TraesCS1D01G264100 chr2B 78.028 710 103 26 602 1276 23373938 23374629 1.340000e-106 398.0
8 TraesCS1D01G264100 chr2A 87.600 250 31 0 6380 6629 213118880 213118631 2.340000e-74 291.0
9 TraesCS1D01G264100 chr4B 85.768 267 38 0 6361 6627 466582666 466582932 3.910000e-72 283.0
10 TraesCS1D01G264100 chr7B 84.151 265 40 2 6364 6628 236781425 236781163 8.530000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G264100 chr1D 359837679 359844307 6628 True 12242 12242 100.000000 1 6629 1 chr1D.!!$R1 6628
1 TraesCS1D01G264100 chr1B 481862369 481868607 6238 True 4872 7631 94.945500 1 6346 2 chr1B.!!$R1 6345
2 TraesCS1D01G264100 chr1A 459307227 459313537 6310 True 2908 7347 91.492667 1 6346 3 chr1A.!!$R1 6345
3 TraesCS1D01G264100 chr2B 23373938 23374629 691 False 398 398 78.028000 602 1276 1 chr2B.!!$F1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.824109 TAGTCCGTTGGATCTGGCAG 59.176 55.000 8.58 8.58 32.73 4.85 F
583 589 1.201414 GTGCTCGGTAATTTGTTGGGG 59.799 52.381 0.00 0.00 0.00 4.96 F
1406 1450 0.253044 TGGCACATGGCTAGGAACTC 59.747 55.000 7.00 0.00 44.01 3.01 F
1597 1642 2.519013 AGGTTGGATTTGCTTGAGGAC 58.481 47.619 0.00 0.00 0.00 3.85 F
2327 2375 2.611225 AAGAGGCTGCACTATACTGC 57.389 50.000 0.50 0.00 37.70 4.40 F
3150 3203 3.447586 TCCAGACTCCTCTTATTGGTTCG 59.552 47.826 0.00 0.00 0.00 3.95 F
4966 5023 0.179086 TTCGTGTGCTGCTTGACTCA 60.179 50.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1433 1.208052 TCAGAGTTCCTAGCCATGTGC 59.792 52.381 0.0 0.0 41.71 4.57 R
2293 2341 2.755103 GCCTCTTTCATGTAAACTGGGG 59.245 50.000 0.0 0.0 0.00 4.96 R
3092 3144 2.126307 CCTGGACGAGCACAGTCG 60.126 66.667 0.0 0.0 45.76 4.18 R
3183 3236 3.282021 TCCTGAAATGGATAAGCAGCAC 58.718 45.455 0.0 0.0 0.00 4.40 R
3678 3732 3.838244 TGTCTTACAAGGAACTGCTGT 57.162 42.857 0.0 0.0 40.86 4.40 R
5074 5142 1.141254 TGTAGCCCACTTCGAACCAAA 59.859 47.619 0.0 0.0 0.00 3.28 R
6500 6636 0.038159 CGGGGGCACTATCGATCTTC 60.038 60.000 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
342 343 0.824109 TAGTCCGTTGGATCTGGCAG 59.176 55.000 8.58 8.58 32.73 4.85
358 359 6.509418 TCTGGCAGTAAATTGGTTATTCAC 57.491 37.500 15.27 0.00 0.00 3.18
530 531 9.672673 ACTGTACAATTTAGAAATGTCTGCTAT 57.327 29.630 0.00 0.00 35.12 2.97
583 589 1.201414 GTGCTCGGTAATTTGTTGGGG 59.799 52.381 0.00 0.00 0.00 4.96
586 592 2.421073 GCTCGGTAATTTGTTGGGGTAC 59.579 50.000 0.00 0.00 0.00 3.34
595 601 5.722021 ATTTGTTGGGGTACATTTCAGTC 57.278 39.130 0.00 0.00 0.00 3.51
624 630 7.667219 CCAATTTCAGTGGCCTATATGAACTAT 59.333 37.037 3.32 0.00 31.72 2.12
700 707 2.104622 TCATCAGTTGTCTGCTGTCCAA 59.895 45.455 0.00 0.00 41.10 3.53
744 755 8.391106 GTCATGTACACAAATTAACTGATCCTC 58.609 37.037 0.00 0.00 0.00 3.71
748 759 7.819415 TGTACACAAATTAACTGATCCTCTCTG 59.181 37.037 0.00 0.00 0.00 3.35
803 816 6.058553 ACTCTGGATTCATTGATGTTCTGA 57.941 37.500 0.00 0.00 0.00 3.27
870 883 8.698973 TGGTATTTGGTTTCAAGATAGTTCAA 57.301 30.769 0.00 0.00 33.98 2.69
922 941 6.757897 TGAAATAAGCCATACCTCAAACAG 57.242 37.500 0.00 0.00 0.00 3.16
959 978 5.762045 TGAAATTGTGAAGTTCTTGCTAGC 58.238 37.500 8.10 8.10 36.51 3.42
1038 1079 3.446516 AGTATGAGTCGGTTGGGTTAGAC 59.553 47.826 0.00 0.00 0.00 2.59
1202 1243 4.216042 TGGCATCACACACAGTTCTTATTG 59.784 41.667 0.00 0.00 0.00 1.90
1326 1370 6.767524 TTGTTAGTTGTGGTGAAATGTTCT 57.232 33.333 0.00 0.00 0.00 3.01
1329 1373 7.254852 TGTTAGTTGTGGTGAAATGTTCTTTC 58.745 34.615 0.00 0.00 0.00 2.62
1339 1383 9.349713 TGGTGAAATGTTCTTTCTTTAGTATGT 57.650 29.630 0.08 0.00 0.00 2.29
1382 1426 4.714308 TCCCTTGTGGTTTCAAGTTTGATT 59.286 37.500 5.86 0.00 42.01 2.57
1406 1450 0.253044 TGGCACATGGCTAGGAACTC 59.747 55.000 7.00 0.00 44.01 3.01
1424 1468 7.454225 AGGAACTCTGAAGGCCATATAATAAC 58.546 38.462 5.01 0.00 0.00 1.89
1425 1469 7.072454 AGGAACTCTGAAGGCCATATAATAACA 59.928 37.037 5.01 0.00 0.00 2.41
1428 1472 8.492415 ACTCTGAAGGCCATATAATAACACTA 57.508 34.615 5.01 0.00 0.00 2.74
1506 1551 5.642063 TGACCGTCTCCATTTATCAAAAGAC 59.358 40.000 0.00 0.00 0.00 3.01
1507 1552 5.556915 ACCGTCTCCATTTATCAAAAGACA 58.443 37.500 0.00 0.00 0.00 3.41
1508 1553 6.180472 ACCGTCTCCATTTATCAAAAGACAT 58.820 36.000 0.00 0.00 0.00 3.06
1509 1554 6.659242 ACCGTCTCCATTTATCAAAAGACATT 59.341 34.615 0.00 0.00 0.00 2.71
1510 1555 7.176690 ACCGTCTCCATTTATCAAAAGACATTT 59.823 33.333 0.00 0.00 0.00 2.32
1511 1556 8.673711 CCGTCTCCATTTATCAAAAGACATTTA 58.326 33.333 0.00 0.00 0.00 1.40
1512 1557 9.490663 CGTCTCCATTTATCAAAAGACATTTAC 57.509 33.333 0.00 0.00 0.00 2.01
1513 1558 9.788960 GTCTCCATTTATCAAAAGACATTTACC 57.211 33.333 0.00 0.00 0.00 2.85
1514 1559 9.527157 TCTCCATTTATCAAAAGACATTTACCA 57.473 29.630 0.00 0.00 0.00 3.25
1597 1642 2.519013 AGGTTGGATTTGCTTGAGGAC 58.481 47.619 0.00 0.00 0.00 3.85
1632 1679 4.963318 TCCTCATGGATGGTTATGACTC 57.037 45.455 0.00 0.00 37.46 3.36
1665 1712 4.656112 CCTCAGTAGTTGGTATCCCTGATT 59.344 45.833 0.00 0.00 0.00 2.57
2327 2375 2.611225 AAGAGGCTGCACTATACTGC 57.389 50.000 0.50 0.00 37.70 4.40
2608 2656 6.073222 CGCAATATCAGGTAAAGAACATACCC 60.073 42.308 0.00 0.00 43.19 3.69
2975 3027 8.800370 TTGGTATGCATGACTGAACTATTTTA 57.200 30.769 10.16 0.00 0.00 1.52
3150 3203 3.447586 TCCAGACTCCTCTTATTGGTTCG 59.552 47.826 0.00 0.00 0.00 3.95
3183 3236 7.369803 ACTGTAGAAAGCACACATTGATTAG 57.630 36.000 0.00 0.00 30.58 1.73
3443 3496 5.152623 TCCAGCAACTATGATACATAGCC 57.847 43.478 15.74 7.32 0.00 3.93
3445 3498 5.071653 TCCAGCAACTATGATACATAGCCAA 59.928 40.000 15.74 0.00 0.00 4.52
3463 3516 5.144832 AGCCAACCTTATTTAACAACCAGT 58.855 37.500 0.00 0.00 0.00 4.00
3660 3713 7.651027 AATCCCAATTTCTCAAGTAAGGATG 57.349 36.000 0.00 0.00 32.07 3.51
4133 4187 5.975988 TGGAGGAAGGTAAGCTGAATTAT 57.024 39.130 0.00 0.00 0.00 1.28
4214 4268 7.391275 TGTTGACTTTGCAGATATGATTCTTCA 59.609 33.333 0.00 0.00 36.00 3.02
4226 4280 9.118300 AGATATGATTCTTCAAAGACATTCACC 57.882 33.333 2.38 0.00 34.96 4.02
4358 4412 4.624024 TCAATACTGAGTTTTCTTACCGCG 59.376 41.667 0.00 0.00 0.00 6.46
4936 4993 6.047511 AGCTATGTGTCTCAAGAAGATGTT 57.952 37.500 0.00 0.00 36.11 2.71
4966 5023 0.179086 TTCGTGTGCTGCTTGACTCA 60.179 50.000 0.00 0.00 0.00 3.41
5074 5142 4.724798 TCCCACCAGTGCCTAAAGTATATT 59.275 41.667 0.00 0.00 0.00 1.28
5094 5172 0.759959 TTGGTTCGAAGTGGGCTACA 59.240 50.000 3.15 0.00 0.00 2.74
5112 5190 5.817816 GGCTACATAATGCAGTTCTGTTAGT 59.182 40.000 7.26 0.00 30.71 2.24
5118 5196 9.618890 ACATAATGCAGTTCTGTTAGTGAATAT 57.381 29.630 0.00 0.00 0.00 1.28
5142 5220 6.798482 TGTCATTCATTTGCATAGCTTTAGG 58.202 36.000 0.00 0.00 0.00 2.69
5211 5289 4.520492 ACATCTCTTTTTGCCTAGTTGGTG 59.480 41.667 0.00 0.00 38.35 4.17
5216 5294 3.810310 TTTTGCCTAGTTGGTGGTTTG 57.190 42.857 0.00 0.00 38.35 2.93
5229 5307 5.986501 TGGTGGTTTGTAACAAACTTCTT 57.013 34.783 2.63 0.00 0.00 2.52
5260 5340 5.066505 GCAGAATTTCCGGAAATACATGACT 59.933 40.000 36.21 22.18 39.88 3.41
5343 5423 4.601019 CTGCACTTTGAAGAAATCGTGTT 58.399 39.130 0.00 0.00 0.00 3.32
5371 5451 2.447887 CGCACGCCTGACTCATGTC 61.448 63.158 0.00 0.00 43.20 3.06
5465 5545 2.470196 GCAATACTGCTGCATGTCTG 57.530 50.000 1.31 6.39 45.74 3.51
5469 5549 0.975887 TACTGCTGCATGTCTGTCCA 59.024 50.000 1.31 0.00 0.00 4.02
5470 5550 0.327259 ACTGCTGCATGTCTGTCCAT 59.673 50.000 1.31 0.00 0.00 3.41
5473 5553 0.454600 GCTGCATGTCTGTCCATTGG 59.545 55.000 0.00 0.00 0.00 3.16
5474 5554 1.830279 CTGCATGTCTGTCCATTGGT 58.170 50.000 1.86 0.00 0.00 3.67
5475 5555 1.471287 CTGCATGTCTGTCCATTGGTG 59.529 52.381 1.86 0.00 0.00 4.17
5476 5556 0.171903 GCATGTCTGTCCATTGGTGC 59.828 55.000 1.86 0.00 0.00 5.01
5477 5557 0.813184 CATGTCTGTCCATTGGTGCC 59.187 55.000 1.86 0.00 0.00 5.01
5478 5558 0.700564 ATGTCTGTCCATTGGTGCCT 59.299 50.000 1.86 0.00 0.00 4.75
5479 5559 0.250858 TGTCTGTCCATTGGTGCCTG 60.251 55.000 1.86 0.00 0.00 4.85
5480 5560 0.250901 GTCTGTCCATTGGTGCCTGT 60.251 55.000 1.86 0.00 0.00 4.00
5481 5561 0.036732 TCTGTCCATTGGTGCCTGTC 59.963 55.000 1.86 0.00 0.00 3.51
5502 5582 2.096565 CGTGTGCTGATGTTCTTGTCTG 60.097 50.000 0.00 0.00 0.00 3.51
5523 5603 2.485657 GCTAATCCAGGCCCAAGAGTAC 60.486 54.545 0.00 0.00 0.00 2.73
5580 5660 1.070309 CACTTCAGCGACAACAGCTTC 60.070 52.381 0.00 0.00 44.06 3.86
5639 5719 4.797471 GTTGCAGCATAACAACTCAATCA 58.203 39.130 0.00 0.00 42.27 2.57
5642 5722 4.277921 TGCAGCATAACAACTCAATCAACA 59.722 37.500 0.00 0.00 0.00 3.33
5718 5810 6.929606 AGAAATGTCCACTTGTAGTGTAAGTC 59.070 38.462 6.13 0.00 44.50 3.01
5746 5838 3.763097 TGACTGCTTGTGTCTGTTTTG 57.237 42.857 0.00 0.00 35.63 2.44
5797 5889 3.370527 GCTATCTGAAACCCTTGTGCCTA 60.371 47.826 0.00 0.00 0.00 3.93
5801 5893 0.881796 GAAACCCTTGTGCCTACAGC 59.118 55.000 0.00 0.00 38.23 4.40
5876 5970 4.517285 ACTGACGCCATCATCATACTTTT 58.483 39.130 0.00 0.00 36.48 2.27
5994 6089 3.070018 GTTGTCTTCATGGAGGTGTGAG 58.930 50.000 0.00 0.00 0.00 3.51
6019 6114 5.426689 AGGCTCAGAAACTGACATGATAA 57.573 39.130 0.00 0.00 35.39 1.75
6020 6115 5.999044 AGGCTCAGAAACTGACATGATAAT 58.001 37.500 0.00 0.00 35.39 1.28
6058 6153 4.730949 ATGCCCATCTGAAGTGAATTTG 57.269 40.909 0.00 0.00 0.00 2.32
6061 6156 4.701651 TGCCCATCTGAAGTGAATTTGTAG 59.298 41.667 0.00 0.00 0.00 2.74
6062 6157 4.943705 GCCCATCTGAAGTGAATTTGTAGA 59.056 41.667 0.00 0.00 0.00 2.59
6063 6158 5.163713 GCCCATCTGAAGTGAATTTGTAGAC 60.164 44.000 0.00 0.00 0.00 2.59
6065 6160 6.430925 CCCATCTGAAGTGAATTTGTAGACAA 59.569 38.462 0.00 0.00 0.00 3.18
6066 6161 7.121759 CCCATCTGAAGTGAATTTGTAGACAAT 59.878 37.037 0.00 0.00 35.55 2.71
6067 6162 7.966753 CCATCTGAAGTGAATTTGTAGACAATG 59.033 37.037 0.00 0.00 35.55 2.82
6069 6164 8.087982 TCTGAAGTGAATTTGTAGACAATGTC 57.912 34.615 5.02 5.02 35.55 3.06
6070 6165 6.887368 TGAAGTGAATTTGTAGACAATGTCG 58.113 36.000 7.83 0.00 37.67 4.35
6072 6167 6.467723 AGTGAATTTGTAGACAATGTCGTC 57.532 37.500 7.83 5.90 37.67 4.20
6073 6168 5.408604 AGTGAATTTGTAGACAATGTCGTCC 59.591 40.000 7.83 0.73 37.67 4.79
6074 6169 5.408604 GTGAATTTGTAGACAATGTCGTCCT 59.591 40.000 7.83 0.00 37.67 3.85
6075 6170 5.637810 TGAATTTGTAGACAATGTCGTCCTC 59.362 40.000 7.83 1.19 37.67 3.71
6077 6172 4.594123 TTGTAGACAATGTCGTCCTCAA 57.406 40.909 7.83 7.49 37.67 3.02
6078 6173 4.801330 TGTAGACAATGTCGTCCTCAAT 57.199 40.909 7.83 0.00 37.67 2.57
6079 6174 4.494484 TGTAGACAATGTCGTCCTCAATG 58.506 43.478 7.83 0.00 37.67 2.82
6080 6175 3.685139 AGACAATGTCGTCCTCAATGT 57.315 42.857 7.83 0.00 37.67 2.71
6081 6176 3.589988 AGACAATGTCGTCCTCAATGTC 58.410 45.455 7.83 6.14 42.52 3.06
6083 6178 3.935203 GACAATGTCGTCCTCAATGTCAT 59.065 43.478 0.00 0.00 42.08 3.06
6084 6179 3.935203 ACAATGTCGTCCTCAATGTCATC 59.065 43.478 0.00 0.00 0.00 2.92
6085 6180 2.672961 TGTCGTCCTCAATGTCATCC 57.327 50.000 0.00 0.00 0.00 3.51
6150 6276 2.449464 CATGATGAAGCCCAAAGTCCA 58.551 47.619 0.00 0.00 0.00 4.02
6152 6278 2.517959 TGATGAAGCCCAAAGTCCAAG 58.482 47.619 0.00 0.00 0.00 3.61
6153 6279 2.158475 TGATGAAGCCCAAAGTCCAAGT 60.158 45.455 0.00 0.00 0.00 3.16
6154 6280 1.691196 TGAAGCCCAAAGTCCAAGTG 58.309 50.000 0.00 0.00 0.00 3.16
6155 6281 1.064017 TGAAGCCCAAAGTCCAAGTGT 60.064 47.619 0.00 0.00 0.00 3.55
6156 6282 1.338020 GAAGCCCAAAGTCCAAGTGTG 59.662 52.381 0.00 0.00 0.00 3.82
6157 6283 0.550914 AGCCCAAAGTCCAAGTGTGA 59.449 50.000 0.00 0.00 0.00 3.58
6158 6284 0.954452 GCCCAAAGTCCAAGTGTGAG 59.046 55.000 0.00 0.00 0.00 3.51
6160 6286 1.133792 CCCAAAGTCCAAGTGTGAGGT 60.134 52.381 0.00 0.00 0.00 3.85
6161 6287 1.949525 CCAAAGTCCAAGTGTGAGGTG 59.050 52.381 0.00 0.00 0.00 4.00
6162 6288 2.643551 CAAAGTCCAAGTGTGAGGTGT 58.356 47.619 0.00 0.00 0.00 4.16
6235 6371 4.927049 TCTTCAAGGCCTCAAAGATGATT 58.073 39.130 20.46 0.00 34.37 2.57
6255 6391 3.153369 TGGTGCAATCTCTTTTGGCTA 57.847 42.857 0.00 0.00 0.00 3.93
6281 6417 0.182775 ATTAACCCATGGCGAGTCCC 59.817 55.000 6.09 0.00 0.00 4.46
6287 6423 0.107017 CCATGGCGAGTCCCAGAATT 60.107 55.000 0.00 0.00 38.50 2.17
6293 6429 1.197721 GCGAGTCCCAGAATTGTGTTG 59.802 52.381 1.49 0.00 0.00 3.33
6339 6475 1.550976 CGTGGAGGCTTAGAAGACCTT 59.449 52.381 6.68 0.00 33.27 3.50
6340 6476 2.028020 CGTGGAGGCTTAGAAGACCTTT 60.028 50.000 6.68 0.00 33.27 3.11
6342 6478 3.008049 GTGGAGGCTTAGAAGACCTTTGA 59.992 47.826 6.68 0.00 33.27 2.69
6344 6480 3.369997 GGAGGCTTAGAAGACCTTTGAGG 60.370 52.174 6.68 0.00 42.49 3.86
6357 6493 4.861102 CCTTTGAGGTGCAATCTCTTTT 57.139 40.909 16.25 0.00 36.15 2.27
6358 6494 4.553323 CCTTTGAGGTGCAATCTCTTTTG 58.447 43.478 16.25 6.90 36.15 2.44
6359 6495 4.279169 CCTTTGAGGTGCAATCTCTTTTGA 59.721 41.667 16.25 0.00 36.15 2.69
6360 6496 4.836125 TTGAGGTGCAATCTCTTTTGAC 57.164 40.909 16.25 0.00 32.78 3.18
6361 6497 4.090761 TGAGGTGCAATCTCTTTTGACT 57.909 40.909 16.25 0.00 32.78 3.41
6362 6498 4.464008 TGAGGTGCAATCTCTTTTGACTT 58.536 39.130 16.25 0.00 32.78 3.01
6363 6499 4.889409 TGAGGTGCAATCTCTTTTGACTTT 59.111 37.500 16.25 0.00 32.78 2.66
6364 6500 5.360714 TGAGGTGCAATCTCTTTTGACTTTT 59.639 36.000 16.25 0.00 32.78 2.27
6365 6501 5.594926 AGGTGCAATCTCTTTTGACTTTTG 58.405 37.500 0.00 0.00 0.00 2.44
6366 6502 4.746611 GGTGCAATCTCTTTTGACTTTTGG 59.253 41.667 0.00 0.00 0.00 3.28
6367 6503 4.746611 GTGCAATCTCTTTTGACTTTTGGG 59.253 41.667 0.00 0.00 0.00 4.12
6368 6504 4.648762 TGCAATCTCTTTTGACTTTTGGGA 59.351 37.500 0.00 0.00 0.00 4.37
6369 6505 5.128499 TGCAATCTCTTTTGACTTTTGGGAA 59.872 36.000 0.00 0.00 0.00 3.97
6370 6506 5.463392 GCAATCTCTTTTGACTTTTGGGAAC 59.537 40.000 0.00 0.00 0.00 3.62
6371 6507 6.572519 CAATCTCTTTTGACTTTTGGGAACA 58.427 36.000 0.00 0.00 39.83 3.18
6372 6508 5.835113 TCTCTTTTGACTTTTGGGAACAG 57.165 39.130 0.00 0.00 44.54 3.16
6373 6509 4.097892 TCTCTTTTGACTTTTGGGAACAGC 59.902 41.667 0.00 0.00 44.54 4.40
6374 6510 4.023291 TCTTTTGACTTTTGGGAACAGCT 58.977 39.130 0.00 0.00 44.54 4.24
6375 6511 3.799281 TTTGACTTTTGGGAACAGCTG 57.201 42.857 13.48 13.48 44.54 4.24
6376 6512 2.727123 TGACTTTTGGGAACAGCTGA 57.273 45.000 23.35 0.00 44.54 4.26
6377 6513 2.575532 TGACTTTTGGGAACAGCTGAG 58.424 47.619 23.35 7.00 44.54 3.35
6378 6514 1.882623 GACTTTTGGGAACAGCTGAGG 59.117 52.381 23.35 0.00 44.54 3.86
6379 6515 1.494721 ACTTTTGGGAACAGCTGAGGA 59.505 47.619 23.35 0.00 44.54 3.71
6380 6516 2.157738 CTTTTGGGAACAGCTGAGGAG 58.842 52.381 23.35 2.75 44.54 3.69
6381 6517 1.434188 TTTGGGAACAGCTGAGGAGA 58.566 50.000 23.35 0.00 44.54 3.71
6382 6518 1.434188 TTGGGAACAGCTGAGGAGAA 58.566 50.000 23.35 4.43 44.54 2.87
6383 6519 1.434188 TGGGAACAGCTGAGGAGAAA 58.566 50.000 23.35 0.00 35.01 2.52
6384 6520 1.072331 TGGGAACAGCTGAGGAGAAAC 59.928 52.381 23.35 2.58 35.01 2.78
6385 6521 1.349357 GGGAACAGCTGAGGAGAAACT 59.651 52.381 23.35 0.00 0.00 2.66
6386 6522 2.614229 GGGAACAGCTGAGGAGAAACTC 60.614 54.545 23.35 2.33 37.99 3.01
6394 6530 2.665603 GGAGAAACTCCTGCGCCT 59.334 61.111 4.18 0.00 46.41 5.52
6395 6531 1.003233 GGAGAAACTCCTGCGCCTT 60.003 57.895 4.18 0.00 46.41 4.35
6396 6532 1.021920 GGAGAAACTCCTGCGCCTTC 61.022 60.000 4.18 0.00 46.41 3.46
6397 6533 1.355066 GAGAAACTCCTGCGCCTTCG 61.355 60.000 4.18 0.00 39.07 3.79
6398 6534 1.374252 GAAACTCCTGCGCCTTCGA 60.374 57.895 4.18 0.00 38.10 3.71
6399 6535 1.355066 GAAACTCCTGCGCCTTCGAG 61.355 60.000 4.18 6.76 38.10 4.04
6400 6536 3.941657 AACTCCTGCGCCTTCGAGC 62.942 63.158 4.18 0.00 38.10 5.03
6401 6537 4.140599 CTCCTGCGCCTTCGAGCT 62.141 66.667 4.18 0.00 38.10 4.09
6402 6538 4.441695 TCCTGCGCCTTCGAGCTG 62.442 66.667 4.18 0.00 38.10 4.24
6403 6539 4.441695 CCTGCGCCTTCGAGCTGA 62.442 66.667 4.18 0.00 36.12 4.26
6404 6540 3.184683 CTGCGCCTTCGAGCTGAC 61.185 66.667 4.18 0.00 36.12 3.51
6405 6541 3.639541 CTGCGCCTTCGAGCTGACT 62.640 63.158 4.18 0.00 36.12 3.41
6406 6542 2.433318 GCGCCTTCGAGCTGACTT 60.433 61.111 0.00 0.00 38.10 3.01
6407 6543 2.448705 GCGCCTTCGAGCTGACTTC 61.449 63.158 0.00 0.00 38.10 3.01
6408 6544 1.214062 CGCCTTCGAGCTGACTTCT 59.786 57.895 0.00 0.00 38.10 2.85
6409 6545 1.075425 CGCCTTCGAGCTGACTTCTG 61.075 60.000 0.00 0.00 38.10 3.02
6410 6546 0.739112 GCCTTCGAGCTGACTTCTGG 60.739 60.000 0.00 0.00 0.00 3.86
6411 6547 0.108424 CCTTCGAGCTGACTTCTGGG 60.108 60.000 0.00 0.00 0.00 4.45
6412 6548 0.108424 CTTCGAGCTGACTTCTGGGG 60.108 60.000 0.00 0.00 0.00 4.96
6413 6549 1.544825 TTCGAGCTGACTTCTGGGGG 61.545 60.000 0.00 0.00 0.00 5.40
6436 6572 3.843240 CGCTCGCGTTTCTCAGGC 61.843 66.667 5.77 0.00 34.35 4.85
6437 6573 3.491652 GCTCGCGTTTCTCAGGCC 61.492 66.667 5.77 0.00 32.16 5.19
6438 6574 3.181967 CTCGCGTTTCTCAGGCCG 61.182 66.667 5.77 0.00 32.16 6.13
6439 6575 3.626680 CTCGCGTTTCTCAGGCCGA 62.627 63.158 5.77 0.00 32.16 5.54
6440 6576 2.736995 CGCGTTTCTCAGGCCGAA 60.737 61.111 0.00 0.00 32.16 4.30
6441 6577 2.314647 CGCGTTTCTCAGGCCGAAA 61.315 57.895 0.00 0.00 32.16 3.46
6442 6578 1.837538 CGCGTTTCTCAGGCCGAAAA 61.838 55.000 5.94 0.00 32.71 2.29
6443 6579 0.385598 GCGTTTCTCAGGCCGAAAAC 60.386 55.000 5.94 9.67 32.71 2.43
6444 6580 0.110823 CGTTTCTCAGGCCGAAAACG 60.111 55.000 23.21 23.21 32.71 3.60
6445 6581 1.223187 GTTTCTCAGGCCGAAAACGA 58.777 50.000 5.94 0.00 32.71 3.85
6446 6582 1.070108 GTTTCTCAGGCCGAAAACGAC 60.070 52.381 5.94 0.00 32.71 4.34
6447 6583 0.601841 TTCTCAGGCCGAAAACGACC 60.602 55.000 0.00 0.00 0.00 4.79
6448 6584 1.004918 CTCAGGCCGAAAACGACCT 60.005 57.895 0.00 0.00 0.00 3.85
6449 6585 0.602905 CTCAGGCCGAAAACGACCTT 60.603 55.000 0.00 0.00 0.00 3.50
6450 6586 0.601841 TCAGGCCGAAAACGACCTTC 60.602 55.000 0.00 0.00 0.00 3.46
6451 6587 0.602905 CAGGCCGAAAACGACCTTCT 60.603 55.000 0.00 0.00 0.00 2.85
6452 6588 0.602905 AGGCCGAAAACGACCTTCTG 60.603 55.000 0.00 0.00 0.00 3.02
6453 6589 1.574702 GGCCGAAAACGACCTTCTGG 61.575 60.000 0.00 0.00 39.83 3.86
6454 6590 1.866925 CCGAAAACGACCTTCTGGC 59.133 57.895 0.00 0.00 36.63 4.85
6455 6591 1.574702 CCGAAAACGACCTTCTGGCC 61.575 60.000 0.00 0.00 36.63 5.36
6456 6592 0.882927 CGAAAACGACCTTCTGGCCA 60.883 55.000 4.71 4.71 36.63 5.36
6457 6593 1.534729 GAAAACGACCTTCTGGCCAT 58.465 50.000 5.51 0.00 36.63 4.40
6458 6594 1.200020 GAAAACGACCTTCTGGCCATG 59.800 52.381 5.51 0.00 36.63 3.66
6459 6595 0.110486 AAACGACCTTCTGGCCATGT 59.890 50.000 5.51 0.64 36.63 3.21
6460 6596 0.321653 AACGACCTTCTGGCCATGTC 60.322 55.000 5.51 10.24 36.63 3.06
6461 6597 1.450312 CGACCTTCTGGCCATGTCC 60.450 63.158 5.51 0.00 36.63 4.02
6462 6598 1.077429 GACCTTCTGGCCATGTCCC 60.077 63.158 5.51 0.00 36.63 4.46
6463 6599 1.542375 ACCTTCTGGCCATGTCCCT 60.542 57.895 5.51 0.00 36.63 4.20
6464 6600 1.142688 ACCTTCTGGCCATGTCCCTT 61.143 55.000 5.51 0.00 36.63 3.95
6465 6601 0.040204 CCTTCTGGCCATGTCCCTTT 59.960 55.000 5.51 0.00 0.00 3.11
6466 6602 1.467920 CTTCTGGCCATGTCCCTTTC 58.532 55.000 5.51 0.00 0.00 2.62
6467 6603 0.039618 TTCTGGCCATGTCCCTTTCC 59.960 55.000 5.51 0.00 0.00 3.13
6468 6604 1.139498 TCTGGCCATGTCCCTTTCCA 61.139 55.000 5.51 0.00 0.00 3.53
6469 6605 0.967380 CTGGCCATGTCCCTTTCCAC 60.967 60.000 5.51 0.00 0.00 4.02
6470 6606 2.046285 GGCCATGTCCCTTTCCACG 61.046 63.158 0.00 0.00 0.00 4.94
6471 6607 2.046285 GCCATGTCCCTTTCCACGG 61.046 63.158 0.00 0.00 0.00 4.94
6472 6608 1.682849 CCATGTCCCTTTCCACGGA 59.317 57.895 0.00 0.00 0.00 4.69
6473 6609 0.392998 CCATGTCCCTTTCCACGGAG 60.393 60.000 0.00 0.00 0.00 4.63
6474 6610 0.392998 CATGTCCCTTTCCACGGAGG 60.393 60.000 0.00 0.00 39.47 4.30
6485 6621 3.838244 TCCACGGAGGAAATTGATAGG 57.162 47.619 0.00 0.00 45.65 2.57
6486 6622 2.438021 TCCACGGAGGAAATTGATAGGG 59.562 50.000 0.00 0.00 45.65 3.53
6487 6623 2.172717 CCACGGAGGAAATTGATAGGGT 59.827 50.000 0.00 0.00 41.22 4.34
6488 6624 3.371595 CCACGGAGGAAATTGATAGGGTT 60.372 47.826 0.00 0.00 41.22 4.11
6489 6625 3.627577 CACGGAGGAAATTGATAGGGTTG 59.372 47.826 0.00 0.00 0.00 3.77
6490 6626 3.265995 ACGGAGGAAATTGATAGGGTTGT 59.734 43.478 0.00 0.00 0.00 3.32
6491 6627 3.877508 CGGAGGAAATTGATAGGGTTGTC 59.122 47.826 0.00 0.00 0.00 3.18
6492 6628 3.877508 GGAGGAAATTGATAGGGTTGTCG 59.122 47.826 0.00 0.00 0.00 4.35
6493 6629 3.877508 GAGGAAATTGATAGGGTTGTCGG 59.122 47.826 0.00 0.00 0.00 4.79
6494 6630 2.357952 GGAAATTGATAGGGTTGTCGGC 59.642 50.000 0.00 0.00 0.00 5.54
6495 6631 3.279434 GAAATTGATAGGGTTGTCGGCT 58.721 45.455 0.00 0.00 0.00 5.52
6496 6632 2.622064 ATTGATAGGGTTGTCGGCTC 57.378 50.000 0.00 0.00 0.00 4.70
6497 6633 0.174845 TTGATAGGGTTGTCGGCTCG 59.825 55.000 0.00 0.00 0.00 5.03
6498 6634 0.681887 TGATAGGGTTGTCGGCTCGA 60.682 55.000 0.00 0.00 0.00 4.04
6499 6635 0.674534 GATAGGGTTGTCGGCTCGAT 59.325 55.000 0.67 0.00 38.42 3.59
6500 6636 0.389391 ATAGGGTTGTCGGCTCGATG 59.611 55.000 0.67 0.00 38.42 3.84
6501 6637 0.681887 TAGGGTTGTCGGCTCGATGA 60.682 55.000 0.67 0.00 38.42 2.92
6502 6638 1.079405 GGGTTGTCGGCTCGATGAA 60.079 57.895 0.67 0.00 38.42 2.57
6503 6639 1.084370 GGGTTGTCGGCTCGATGAAG 61.084 60.000 0.67 0.00 38.42 3.02
6504 6640 0.108804 GGTTGTCGGCTCGATGAAGA 60.109 55.000 0.67 0.00 38.42 2.87
6505 6641 1.471676 GGTTGTCGGCTCGATGAAGAT 60.472 52.381 0.67 0.00 38.42 2.40
6506 6642 1.855360 GTTGTCGGCTCGATGAAGATC 59.145 52.381 0.67 0.00 38.42 2.75
6517 6653 2.966050 GATGAAGATCGATAGTGCCCC 58.034 52.381 0.00 0.00 37.40 5.80
6518 6654 1.048601 TGAAGATCGATAGTGCCCCC 58.951 55.000 0.00 0.00 37.40 5.40
6519 6655 0.038159 GAAGATCGATAGTGCCCCCG 60.038 60.000 0.00 0.00 37.40 5.73
6520 6656 1.472662 AAGATCGATAGTGCCCCCGG 61.473 60.000 0.00 0.00 37.40 5.73
6542 6678 4.101448 GATGGCTGTCCGGTGGCT 62.101 66.667 0.00 0.00 34.14 4.75
6543 6679 3.628646 GATGGCTGTCCGGTGGCTT 62.629 63.158 0.00 3.99 34.14 4.35
6544 6680 3.210012 ATGGCTGTCCGGTGGCTTT 62.210 57.895 0.00 0.00 34.14 3.51
6545 6681 2.597510 GGCTGTCCGGTGGCTTTT 60.598 61.111 0.00 0.00 0.00 2.27
6546 6682 2.200337 GGCTGTCCGGTGGCTTTTT 61.200 57.895 0.00 0.00 0.00 1.94
6563 6699 2.682155 TTTTTCGTTGCTTTTGGCCT 57.318 40.000 3.32 0.00 40.92 5.19
6564 6700 1.933247 TTTTCGTTGCTTTTGGCCTG 58.067 45.000 3.32 0.00 40.92 4.85
6565 6701 0.820871 TTTCGTTGCTTTTGGCCTGT 59.179 45.000 3.32 0.00 40.92 4.00
6566 6702 0.102120 TTCGTTGCTTTTGGCCTGTG 59.898 50.000 3.32 0.00 40.92 3.66
6567 6703 1.034838 TCGTTGCTTTTGGCCTGTGT 61.035 50.000 3.32 0.00 40.92 3.72
6568 6704 0.179113 CGTTGCTTTTGGCCTGTGTT 60.179 50.000 3.32 0.00 40.92 3.32
6569 6705 1.570813 GTTGCTTTTGGCCTGTGTTC 58.429 50.000 3.32 0.00 40.92 3.18
6570 6706 1.134848 GTTGCTTTTGGCCTGTGTTCA 60.135 47.619 3.32 0.00 40.92 3.18
6571 6707 1.189752 TGCTTTTGGCCTGTGTTCAA 58.810 45.000 3.32 0.00 40.92 2.69
6572 6708 1.552337 TGCTTTTGGCCTGTGTTCAAA 59.448 42.857 3.32 0.00 40.92 2.69
6573 6709 2.204237 GCTTTTGGCCTGTGTTCAAAG 58.796 47.619 3.32 2.50 32.88 2.77
6574 6710 2.204237 CTTTTGGCCTGTGTTCAAAGC 58.796 47.619 3.32 0.00 32.88 3.51
6575 6711 1.484038 TTTGGCCTGTGTTCAAAGCT 58.516 45.000 3.32 0.00 0.00 3.74
6576 6712 1.032014 TTGGCCTGTGTTCAAAGCTC 58.968 50.000 3.32 0.00 0.00 4.09
6577 6713 0.183492 TGGCCTGTGTTCAAAGCTCT 59.817 50.000 3.32 0.00 0.00 4.09
6578 6714 0.877743 GGCCTGTGTTCAAAGCTCTC 59.122 55.000 0.00 0.00 0.00 3.20
6579 6715 1.544314 GGCCTGTGTTCAAAGCTCTCT 60.544 52.381 0.00 0.00 0.00 3.10
6580 6716 2.225467 GCCTGTGTTCAAAGCTCTCTT 58.775 47.619 0.00 0.00 0.00 2.85
6581 6717 2.225255 GCCTGTGTTCAAAGCTCTCTTC 59.775 50.000 0.00 0.00 0.00 2.87
6582 6718 3.737850 CCTGTGTTCAAAGCTCTCTTCT 58.262 45.455 0.00 0.00 0.00 2.85
6583 6719 4.800914 GCCTGTGTTCAAAGCTCTCTTCTA 60.801 45.833 0.00 0.00 0.00 2.10
6584 6720 4.688413 CCTGTGTTCAAAGCTCTCTTCTAC 59.312 45.833 0.00 0.00 0.00 2.59
6585 6721 4.299155 TGTGTTCAAAGCTCTCTTCTACG 58.701 43.478 0.00 0.00 0.00 3.51
6586 6722 4.037565 TGTGTTCAAAGCTCTCTTCTACGA 59.962 41.667 0.00 0.00 0.00 3.43
6587 6723 5.164954 GTGTTCAAAGCTCTCTTCTACGAT 58.835 41.667 0.00 0.00 0.00 3.73
6588 6724 6.072119 TGTGTTCAAAGCTCTCTTCTACGATA 60.072 38.462 0.00 0.00 0.00 2.92
6589 6725 6.975772 GTGTTCAAAGCTCTCTTCTACGATAT 59.024 38.462 0.00 0.00 0.00 1.63
6590 6726 7.489757 GTGTTCAAAGCTCTCTTCTACGATATT 59.510 37.037 0.00 0.00 0.00 1.28
6591 6727 8.683615 TGTTCAAAGCTCTCTTCTACGATATTA 58.316 33.333 0.00 0.00 0.00 0.98
6592 6728 9.685828 GTTCAAAGCTCTCTTCTACGATATTAT 57.314 33.333 0.00 0.00 0.00 1.28
6593 6729 9.900710 TTCAAAGCTCTCTTCTACGATATTATC 57.099 33.333 0.00 0.00 0.00 1.75
6594 6730 9.067986 TCAAAGCTCTCTTCTACGATATTATCA 57.932 33.333 4.63 0.00 0.00 2.15
6595 6731 9.684448 CAAAGCTCTCTTCTACGATATTATCAA 57.316 33.333 4.63 0.00 0.00 2.57
6596 6732 9.685828 AAAGCTCTCTTCTACGATATTATCAAC 57.314 33.333 4.63 0.00 0.00 3.18
6597 6733 7.523219 AGCTCTCTTCTACGATATTATCAACG 58.477 38.462 4.63 0.00 0.00 4.10
6598 6734 6.743627 GCTCTCTTCTACGATATTATCAACGG 59.256 42.308 4.63 0.00 0.00 4.44
6599 6735 7.361031 GCTCTCTTCTACGATATTATCAACGGA 60.361 40.741 4.63 0.00 0.00 4.69
6600 6736 8.563123 TCTCTTCTACGATATTATCAACGGAT 57.437 34.615 4.63 0.00 37.55 4.18
6601 6737 9.011095 TCTCTTCTACGATATTATCAACGGATT 57.989 33.333 4.63 0.00 34.89 3.01
6602 6738 9.279904 CTCTTCTACGATATTATCAACGGATTC 57.720 37.037 4.63 0.00 34.89 2.52
6603 6739 7.961283 TCTTCTACGATATTATCAACGGATTCG 59.039 37.037 4.63 0.00 36.56 3.34
6604 6740 6.025896 TCTACGATATTATCAACGGATTCGC 58.974 40.000 0.00 0.00 40.63 4.70
6605 6741 3.606777 ACGATATTATCAACGGATTCGCG 59.393 43.478 0.00 0.00 40.63 5.87
6606 6742 3.606777 CGATATTATCAACGGATTCGCGT 59.393 43.478 5.77 0.00 40.63 6.01
6607 6743 4.089493 CGATATTATCAACGGATTCGCGTT 59.911 41.667 5.77 6.99 40.63 4.84
6608 6744 5.284424 CGATATTATCAACGGATTCGCGTTA 59.716 40.000 5.77 0.00 40.63 3.18
6609 6745 4.966850 ATTATCAACGGATTCGCGTTAG 57.033 40.909 5.77 0.00 40.63 2.34
6610 6746 1.567504 ATCAACGGATTCGCGTTAGG 58.432 50.000 5.77 0.00 40.63 2.69
6611 6747 1.079875 TCAACGGATTCGCGTTAGGC 61.080 55.000 5.77 0.00 40.63 3.93
6612 6748 1.079681 AACGGATTCGCGTTAGGCA 60.080 52.632 5.77 0.00 43.84 4.75
6613 6749 1.356527 AACGGATTCGCGTTAGGCAC 61.357 55.000 5.77 0.00 43.84 5.01
6614 6750 1.807981 CGGATTCGCGTTAGGCACA 60.808 57.895 5.77 0.00 43.84 4.57
6615 6751 1.355796 CGGATTCGCGTTAGGCACAA 61.356 55.000 5.77 0.00 43.84 3.33
6616 6752 1.014352 GGATTCGCGTTAGGCACAAT 58.986 50.000 5.77 0.00 43.84 2.71
6617 6753 2.206750 GGATTCGCGTTAGGCACAATA 58.793 47.619 5.77 0.00 43.84 1.90
6618 6754 2.221055 GGATTCGCGTTAGGCACAATAG 59.779 50.000 5.77 0.00 43.84 1.73
6619 6755 2.658373 TTCGCGTTAGGCACAATAGA 57.342 45.000 5.77 0.00 43.84 1.98
6620 6756 1.917273 TCGCGTTAGGCACAATAGAC 58.083 50.000 5.77 0.00 43.84 2.59
6621 6757 1.202817 TCGCGTTAGGCACAATAGACA 59.797 47.619 5.77 0.00 43.84 3.41
6622 6758 2.159156 TCGCGTTAGGCACAATAGACAT 60.159 45.455 5.77 0.00 43.84 3.06
6623 6759 3.067040 TCGCGTTAGGCACAATAGACATA 59.933 43.478 5.77 0.00 43.84 2.29
6624 6760 3.987868 CGCGTTAGGCACAATAGACATAT 59.012 43.478 0.00 0.00 43.84 1.78
6625 6761 4.090066 CGCGTTAGGCACAATAGACATATC 59.910 45.833 0.00 0.00 43.84 1.63
6626 6762 4.090066 GCGTTAGGCACAATAGACATATCG 59.910 45.833 0.00 0.00 42.87 2.92
6627 6763 4.090066 CGTTAGGCACAATAGACATATCGC 59.910 45.833 0.00 0.00 0.00 4.58
6628 6764 2.677199 AGGCACAATAGACATATCGCG 58.323 47.619 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
358 359 0.034337 TCTCGAACCCCAAAAGTCGG 59.966 55.000 0.00 0.00 0.00 4.79
530 531 9.627123 CAGGTTTTAATATTCAATACAGGAGGA 57.373 33.333 0.00 0.00 0.00 3.71
583 589 8.230486 CACTGAAATTGGTAGACTGAAATGTAC 58.770 37.037 0.00 0.00 0.00 2.90
586 592 6.615088 CCACTGAAATTGGTAGACTGAAATG 58.385 40.000 0.00 0.00 0.00 2.32
595 601 6.533730 TCATATAGGCCACTGAAATTGGTAG 58.466 40.000 5.01 0.00 36.40 3.18
624 630 4.280789 AGGGATAGGACATGACAGGTAA 57.719 45.455 0.00 0.00 0.00 2.85
700 707 6.927416 ACATGACTGAACAATACAATGCATT 58.073 32.000 5.99 5.99 0.00 3.56
744 755 2.542411 GCAAAACTGCAGGACAACAGAG 60.542 50.000 19.93 0.00 37.35 3.35
748 759 0.459489 TGGCAAAACTGCAGGACAAC 59.541 50.000 19.93 4.16 36.33 3.32
783 794 7.541091 CAGTTTTCAGAACATCAATGAATCCAG 59.459 37.037 0.00 0.00 33.26 3.86
797 810 5.343249 ACTCAACAATGCAGTTTTCAGAAC 58.657 37.500 0.00 0.00 0.00 3.01
800 813 9.630098 ATTATTACTCAACAATGCAGTTTTCAG 57.370 29.630 0.00 0.00 0.00 3.02
803 816 9.979578 TGAATTATTACTCAACAATGCAGTTTT 57.020 25.926 0.00 0.00 0.00 2.43
870 883 9.178758 CACTAAAAAGGCAATCCTCTAGTTAAT 57.821 33.333 0.00 0.00 43.40 1.40
878 891 7.391148 TTCATACACTAAAAAGGCAATCCTC 57.609 36.000 0.00 0.00 43.40 3.71
975 994 3.482436 TCGGTAATCACTGCAAAAGGTT 58.518 40.909 0.00 0.00 0.00 3.50
1038 1079 3.000041 CCTCTCATCCTCTATCGAGTCG 59.000 54.545 6.09 6.09 35.43 4.18
1202 1243 7.362802 AGGTTTGTCCTAATACTCCATAGAC 57.637 40.000 0.00 0.00 46.10 2.59
1362 1406 7.593875 TTTCAATCAAACTTGAAACCACAAG 57.406 32.000 7.65 0.00 45.45 3.16
1382 1426 1.284491 TCCTAGCCATGTGCCATTTCA 59.716 47.619 2.95 0.00 42.71 2.69
1389 1433 1.208052 TCAGAGTTCCTAGCCATGTGC 59.792 52.381 0.00 0.00 41.71 4.57
1476 1520 5.874810 TGATAAATGGAGACGGTCAGAAAAG 59.125 40.000 11.27 0.00 0.00 2.27
1508 1553 9.513906 TGAAGATACATCACATCTTTTGGTAAA 57.486 29.630 0.00 0.00 41.66 2.01
1509 1554 9.513906 TTGAAGATACATCACATCTTTTGGTAA 57.486 29.630 0.00 0.00 41.66 2.85
1510 1555 9.513906 TTTGAAGATACATCACATCTTTTGGTA 57.486 29.630 0.00 0.00 41.66 3.25
1511 1556 8.408043 TTTGAAGATACATCACATCTTTTGGT 57.592 30.769 0.00 0.00 41.66 3.67
1512 1557 9.695526 TTTTTGAAGATACATCACATCTTTTGG 57.304 29.630 0.00 0.00 41.66 3.28
1665 1712 9.770097 TCCAAACATTTGCTTTTTATGTTATCA 57.230 25.926 0.00 0.00 40.54 2.15
1726 1773 3.739810 CCTCATCTGTATCTGCACAATCG 59.260 47.826 0.00 0.00 0.00 3.34
2254 2302 9.396022 ACAGTACCTAAAACCATCTCATTAATG 57.604 33.333 9.29 9.29 0.00 1.90
2285 2333 3.396276 TCATGTAAACTGGGGAAGTGGAA 59.604 43.478 0.00 0.00 39.81 3.53
2293 2341 2.755103 GCCTCTTTCATGTAAACTGGGG 59.245 50.000 0.00 0.00 0.00 4.96
2327 2375 8.686334 AGGTTACAAGATGCCAATTGTTATAAG 58.314 33.333 4.43 0.00 40.09 1.73
2608 2656 6.923508 GGACCAAAGAGAAAACATGGTAAAAG 59.076 38.462 0.00 0.00 44.12 2.27
2924 2976 7.102847 TGCAGAAAGATCAATATCATGCAAA 57.897 32.000 0.00 0.00 37.00 3.68
2975 3027 7.133483 AGTTCCTGTATATAGTCTTCCAAGGT 58.867 38.462 0.00 0.00 0.00 3.50
3092 3144 2.126307 CCTGGACGAGCACAGTCG 60.126 66.667 0.00 0.00 45.76 4.18
3183 3236 3.282021 TCCTGAAATGGATAAGCAGCAC 58.718 45.455 0.00 0.00 0.00 4.40
3443 3496 9.458374 CAAAGTACTGGTTGTTAAATAAGGTTG 57.542 33.333 0.00 0.00 0.00 3.77
3445 3498 8.000127 TCCAAAGTACTGGTTGTTAAATAAGGT 59.000 33.333 0.00 0.00 37.74 3.50
3678 3732 3.838244 TGTCTTACAAGGAACTGCTGT 57.162 42.857 0.00 0.00 40.86 4.40
4133 4187 3.876914 GCCAGTATAACTAGCATTGCACA 59.123 43.478 11.91 0.00 33.01 4.57
4214 4268 6.232581 TCAACATTTTGGGTGAATGTCTTT 57.767 33.333 3.28 0.00 44.55 2.52
4226 4280 5.183713 TGGATCTGTTAGCTCAACATTTTGG 59.816 40.000 0.00 0.00 45.96 3.28
4358 4412 3.554934 TGGGTCAACAATATCCTGCATC 58.445 45.455 0.00 0.00 0.00 3.91
4936 4993 1.585267 GCACACGAATGGCCATGTCA 61.585 55.000 21.63 0.00 0.00 3.58
4966 5023 5.781818 ACCAAATTTCTGGGTTGAGATGAAT 59.218 36.000 1.33 0.00 41.16 2.57
5074 5142 1.141254 TGTAGCCCACTTCGAACCAAA 59.859 47.619 0.00 0.00 0.00 3.28
5094 5172 9.618890 ACATATTCACTAACAGAACTGCATTAT 57.381 29.630 1.46 0.00 0.00 1.28
5112 5190 8.173542 AGCTATGCAAATGAATGACATATTCA 57.826 30.769 4.97 4.97 41.59 2.57
5118 5196 6.602803 TCCTAAAGCTATGCAAATGAATGACA 59.397 34.615 0.00 0.00 0.00 3.58
5134 5212 6.665680 TGAGTATCAAGACTTCTCCTAAAGCT 59.334 38.462 0.57 0.00 45.97 3.74
5188 5266 4.520492 CACCAACTAGGCAAAAAGAGATGT 59.480 41.667 0.00 0.00 43.14 3.06
5229 5307 2.857483 TCCGGAAATTCTGCAGACAAA 58.143 42.857 18.03 1.61 0.00 2.83
5260 5340 7.665559 AGCAGTTCATTGTAATCCTTCTTGTAA 59.334 33.333 0.00 0.00 0.00 2.41
5371 5451 3.056107 TCAGGTCATCCACTTTAACCTCG 60.056 47.826 0.00 0.00 38.27 4.63
5465 5545 1.302511 ACGACAGGCACCAATGGAC 60.303 57.895 6.16 0.00 0.00 4.02
5469 5549 2.260869 GCACACGACAGGCACCAAT 61.261 57.895 0.00 0.00 0.00 3.16
5470 5550 2.899838 GCACACGACAGGCACCAA 60.900 61.111 0.00 0.00 0.00 3.67
5473 5553 1.669115 ATCAGCACACGACAGGCAC 60.669 57.895 0.00 0.00 0.00 5.01
5474 5554 1.668793 CATCAGCACACGACAGGCA 60.669 57.895 0.00 0.00 0.00 4.75
5475 5555 1.230635 AACATCAGCACACGACAGGC 61.231 55.000 0.00 0.00 0.00 4.85
5476 5556 0.792640 GAACATCAGCACACGACAGG 59.207 55.000 0.00 0.00 0.00 4.00
5477 5557 1.788258 AGAACATCAGCACACGACAG 58.212 50.000 0.00 0.00 0.00 3.51
5478 5558 1.866601 CAAGAACATCAGCACACGACA 59.133 47.619 0.00 0.00 0.00 4.35
5479 5559 1.867233 ACAAGAACATCAGCACACGAC 59.133 47.619 0.00 0.00 0.00 4.34
5480 5560 2.135139 GACAAGAACATCAGCACACGA 58.865 47.619 0.00 0.00 0.00 4.35
5481 5561 2.096565 CAGACAAGAACATCAGCACACG 60.097 50.000 0.00 0.00 0.00 4.49
5502 5582 0.548510 ACTCTTGGGCCTGGATTAGC 59.451 55.000 4.53 0.00 0.00 3.09
5642 5722 1.690633 ACAGGGGTCATCGGCTGAT 60.691 57.895 0.90 0.90 35.97 2.90
5657 5737 3.056250 AGAGGTAGCTGTTCATCACACAG 60.056 47.826 0.00 0.00 43.99 3.66
5718 5810 1.269206 ACACAAGCAGTCATTTTGCCG 60.269 47.619 0.00 0.00 42.48 5.69
5746 5838 6.754209 CAGTACACCAATATCAGAACTCTCAC 59.246 42.308 0.00 0.00 0.00 3.51
5797 5889 0.391661 ACATCTCGAAATGCCGCTGT 60.392 50.000 0.00 0.00 0.00 4.40
5801 5893 1.645034 ACAGACATCTCGAAATGCCG 58.355 50.000 0.00 0.00 0.00 5.69
5809 5901 4.703645 TCAAGAAGGTACAGACATCTCG 57.296 45.455 0.00 0.00 0.00 4.04
5848 5940 2.433970 TGATGATGGCGTCAGTTCCATA 59.566 45.455 15.57 0.00 42.74 2.74
5948 6043 3.405093 GATGCCATGGACGCCCTCA 62.405 63.158 18.40 1.51 0.00 3.86
5950 6045 4.195334 GGATGCCATGGACGCCCT 62.195 66.667 18.40 0.00 0.00 5.19
5951 6046 4.504596 TGGATGCCATGGACGCCC 62.505 66.667 18.40 10.79 0.00 6.13
5954 6049 0.386476 CCAATTGGATGCCATGGACG 59.614 55.000 20.50 0.00 36.14 4.79
5956 6051 1.832366 CAACCAATTGGATGCCATGGA 59.168 47.619 31.22 0.31 36.14 3.41
5994 6089 4.569943 TCATGTCAGTTTCTGAGCCTTAC 58.430 43.478 0.00 0.00 41.46 2.34
6019 6114 2.880890 GCATTATTTCACTGCCTCCGAT 59.119 45.455 0.00 0.00 0.00 4.18
6020 6115 2.288666 GCATTATTTCACTGCCTCCGA 58.711 47.619 0.00 0.00 0.00 4.55
6046 6141 6.481976 ACGACATTGTCTACAAATTCACTTCA 59.518 34.615 14.54 0.00 39.55 3.02
6058 6153 4.495422 ACATTGAGGACGACATTGTCTAC 58.505 43.478 14.54 8.08 38.91 2.59
6061 6156 3.325870 TGACATTGAGGACGACATTGTC 58.674 45.455 6.73 6.73 43.12 3.18
6062 6157 3.401033 TGACATTGAGGACGACATTGT 57.599 42.857 0.00 0.00 35.52 2.71
6063 6158 3.310774 GGATGACATTGAGGACGACATTG 59.689 47.826 0.00 0.00 0.00 2.82
6065 6160 2.158900 GGGATGACATTGAGGACGACAT 60.159 50.000 0.00 0.00 0.00 3.06
6066 6161 1.207089 GGGATGACATTGAGGACGACA 59.793 52.381 0.00 0.00 0.00 4.35
6067 6162 1.802880 CGGGATGACATTGAGGACGAC 60.803 57.143 0.00 0.00 0.00 4.34
6069 6164 1.154205 GCGGGATGACATTGAGGACG 61.154 60.000 0.00 0.00 0.00 4.79
6070 6165 0.107703 TGCGGGATGACATTGAGGAC 60.108 55.000 0.00 0.00 0.00 3.85
6072 6167 1.402968 CTTTGCGGGATGACATTGAGG 59.597 52.381 0.00 0.00 0.00 3.86
6073 6168 1.402968 CCTTTGCGGGATGACATTGAG 59.597 52.381 0.00 0.00 0.00 3.02
6074 6169 1.462616 CCTTTGCGGGATGACATTGA 58.537 50.000 0.00 0.00 0.00 2.57
6085 6180 2.014128 CTACATAACACCCCTTTGCGG 58.986 52.381 0.00 0.00 0.00 5.69
6150 6276 6.486993 GGAGAAAATTAAGACACCTCACACTT 59.513 38.462 0.00 0.00 0.00 3.16
6152 6278 5.763204 TGGAGAAAATTAAGACACCTCACAC 59.237 40.000 0.00 0.00 0.00 3.82
6153 6279 5.763204 GTGGAGAAAATTAAGACACCTCACA 59.237 40.000 0.00 0.00 0.00 3.58
6154 6280 5.181433 GGTGGAGAAAATTAAGACACCTCAC 59.819 44.000 0.00 0.00 42.60 3.51
6155 6281 5.313712 GGTGGAGAAAATTAAGACACCTCA 58.686 41.667 0.00 0.00 42.60 3.86
6156 6282 4.700692 GGGTGGAGAAAATTAAGACACCTC 59.299 45.833 10.33 0.00 44.64 3.85
6157 6283 4.105697 TGGGTGGAGAAAATTAAGACACCT 59.894 41.667 10.33 0.00 44.64 4.00
6158 6284 4.403734 TGGGTGGAGAAAATTAAGACACC 58.596 43.478 0.00 0.00 44.55 4.16
6160 6286 4.522789 GCTTGGGTGGAGAAAATTAAGACA 59.477 41.667 0.00 0.00 0.00 3.41
6161 6287 4.522789 TGCTTGGGTGGAGAAAATTAAGAC 59.477 41.667 0.00 0.00 0.00 3.01
6162 6288 4.735369 TGCTTGGGTGGAGAAAATTAAGA 58.265 39.130 0.00 0.00 0.00 2.10
6235 6371 1.999648 AGCCAAAAGAGATTGCACCA 58.000 45.000 0.00 0.00 0.00 4.17
6255 6391 0.106015 GCCATGGGTTAATGGGAGCT 60.106 55.000 15.13 0.00 46.24 4.09
6281 6417 1.955778 TGGAGCACCAACACAATTCTG 59.044 47.619 0.00 0.00 43.91 3.02
6293 6429 3.443045 CGTGGGCAATGGAGCACC 61.443 66.667 0.00 0.00 37.02 5.01
6339 6475 4.464008 AGTCAAAAGAGATTGCACCTCAA 58.536 39.130 15.32 0.00 39.32 3.02
6340 6476 4.090761 AGTCAAAAGAGATTGCACCTCA 57.909 40.909 15.32 0.00 33.25 3.86
6342 6478 5.452356 CCAAAAGTCAAAAGAGATTGCACCT 60.452 40.000 0.00 0.00 0.00 4.00
6344 6480 4.746611 CCCAAAAGTCAAAAGAGATTGCAC 59.253 41.667 0.00 0.00 0.00 4.57
6345 6481 4.648762 TCCCAAAAGTCAAAAGAGATTGCA 59.351 37.500 0.00 0.00 0.00 4.08
6346 6482 5.200368 TCCCAAAAGTCAAAAGAGATTGC 57.800 39.130 0.00 0.00 0.00 3.56
6347 6483 6.572519 TGTTCCCAAAAGTCAAAAGAGATTG 58.427 36.000 0.00 0.00 0.00 2.67
6348 6484 6.683861 GCTGTTCCCAAAAGTCAAAAGAGATT 60.684 38.462 0.00 0.00 0.00 2.40
6349 6485 5.221322 GCTGTTCCCAAAAGTCAAAAGAGAT 60.221 40.000 0.00 0.00 0.00 2.75
6350 6486 4.097892 GCTGTTCCCAAAAGTCAAAAGAGA 59.902 41.667 0.00 0.00 0.00 3.10
6351 6487 4.098501 AGCTGTTCCCAAAAGTCAAAAGAG 59.901 41.667 0.00 0.00 0.00 2.85
6352 6488 4.023291 AGCTGTTCCCAAAAGTCAAAAGA 58.977 39.130 0.00 0.00 0.00 2.52
6353 6489 4.114794 CAGCTGTTCCCAAAAGTCAAAAG 58.885 43.478 5.25 0.00 0.00 2.27
6354 6490 3.766591 TCAGCTGTTCCCAAAAGTCAAAA 59.233 39.130 14.67 0.00 0.00 2.44
6355 6491 3.360867 TCAGCTGTTCCCAAAAGTCAAA 58.639 40.909 14.67 0.00 0.00 2.69
6356 6492 2.951642 CTCAGCTGTTCCCAAAAGTCAA 59.048 45.455 14.67 0.00 0.00 3.18
6357 6493 2.575532 CTCAGCTGTTCCCAAAAGTCA 58.424 47.619 14.67 0.00 0.00 3.41
6358 6494 1.882623 CCTCAGCTGTTCCCAAAAGTC 59.117 52.381 14.67 0.00 0.00 3.01
6359 6495 1.494721 TCCTCAGCTGTTCCCAAAAGT 59.505 47.619 14.67 0.00 0.00 2.66
6360 6496 2.157738 CTCCTCAGCTGTTCCCAAAAG 58.842 52.381 14.67 0.33 0.00 2.27
6361 6497 1.774254 TCTCCTCAGCTGTTCCCAAAA 59.226 47.619 14.67 0.00 0.00 2.44
6362 6498 1.434188 TCTCCTCAGCTGTTCCCAAA 58.566 50.000 14.67 0.00 0.00 3.28
6363 6499 1.434188 TTCTCCTCAGCTGTTCCCAA 58.566 50.000 14.67 0.00 0.00 4.12
6364 6500 1.072331 GTTTCTCCTCAGCTGTTCCCA 59.928 52.381 14.67 0.00 0.00 4.37
6365 6501 1.349357 AGTTTCTCCTCAGCTGTTCCC 59.651 52.381 14.67 0.00 0.00 3.97
6366 6502 2.614229 GGAGTTTCTCCTCAGCTGTTCC 60.614 54.545 14.67 4.75 46.41 3.62
6367 6503 2.694213 GGAGTTTCTCCTCAGCTGTTC 58.306 52.381 14.67 0.00 46.41 3.18
6368 6504 2.849294 GGAGTTTCTCCTCAGCTGTT 57.151 50.000 14.67 0.00 46.41 3.16
6378 6514 1.355066 CGAAGGCGCAGGAGTTTCTC 61.355 60.000 10.83 0.00 0.00 2.87
6379 6515 1.374758 CGAAGGCGCAGGAGTTTCT 60.375 57.895 10.83 0.00 0.00 2.52
6380 6516 1.355066 CTCGAAGGCGCAGGAGTTTC 61.355 60.000 10.83 1.98 37.46 2.78
6381 6517 1.374758 CTCGAAGGCGCAGGAGTTT 60.375 57.895 10.83 0.00 37.46 2.66
6382 6518 2.262915 CTCGAAGGCGCAGGAGTT 59.737 61.111 10.83 0.00 37.46 3.01
6383 6519 4.443266 GCTCGAAGGCGCAGGAGT 62.443 66.667 10.83 0.00 37.46 3.85
6384 6520 4.140599 AGCTCGAAGGCGCAGGAG 62.141 66.667 10.83 10.71 37.46 3.69
6385 6521 4.441695 CAGCTCGAAGGCGCAGGA 62.442 66.667 10.83 0.00 37.46 3.86
6386 6522 4.441695 TCAGCTCGAAGGCGCAGG 62.442 66.667 10.83 0.00 37.46 4.85
6387 6523 3.184683 GTCAGCTCGAAGGCGCAG 61.185 66.667 10.83 0.00 37.46 5.18
6388 6524 3.226429 AAGTCAGCTCGAAGGCGCA 62.226 57.895 10.83 0.00 37.46 6.09
6389 6525 2.433318 AAGTCAGCTCGAAGGCGC 60.433 61.111 0.00 0.00 37.46 6.53
6390 6526 1.075425 CAGAAGTCAGCTCGAAGGCG 61.075 60.000 0.00 0.00 37.29 5.52
6391 6527 0.739112 CCAGAAGTCAGCTCGAAGGC 60.739 60.000 0.00 0.00 0.00 4.35
6392 6528 0.108424 CCCAGAAGTCAGCTCGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
6393 6529 0.108424 CCCCAGAAGTCAGCTCGAAG 60.108 60.000 0.00 0.00 0.00 3.79
6394 6530 1.544825 CCCCCAGAAGTCAGCTCGAA 61.545 60.000 0.00 0.00 0.00 3.71
6395 6531 1.984570 CCCCCAGAAGTCAGCTCGA 60.985 63.158 0.00 0.00 0.00 4.04
6396 6532 2.581354 CCCCCAGAAGTCAGCTCG 59.419 66.667 0.00 0.00 0.00 5.03
6419 6555 3.843240 GCCTGAGAAACGCGAGCG 61.843 66.667 15.93 16.38 46.03 5.03
6420 6556 3.491652 GGCCTGAGAAACGCGAGC 61.492 66.667 15.93 0.41 0.00 5.03
6421 6557 3.181967 CGGCCTGAGAAACGCGAG 61.182 66.667 15.93 0.00 0.00 5.03
6422 6558 2.702751 TTTCGGCCTGAGAAACGCGA 62.703 55.000 15.93 0.00 33.23 5.87
6423 6559 1.837538 TTTTCGGCCTGAGAAACGCG 61.838 55.000 3.53 3.53 37.33 6.01
6424 6560 0.385598 GTTTTCGGCCTGAGAAACGC 60.386 55.000 0.00 0.00 37.33 4.84
6425 6561 0.110823 CGTTTTCGGCCTGAGAAACG 60.111 55.000 23.97 23.97 40.75 3.60
6426 6562 1.070108 GTCGTTTTCGGCCTGAGAAAC 60.070 52.381 0.00 11.58 42.59 2.78
6427 6563 1.223187 GTCGTTTTCGGCCTGAGAAA 58.777 50.000 0.00 0.00 42.59 2.52
6428 6564 2.908817 GTCGTTTTCGGCCTGAGAA 58.091 52.632 0.00 0.00 42.59 2.87
6429 6565 4.667420 GTCGTTTTCGGCCTGAGA 57.333 55.556 0.00 0.00 42.59 3.27
6436 6572 1.574702 GGCCAGAAGGTCGTTTTCGG 61.575 60.000 0.00 0.00 38.56 4.30
6437 6573 0.882927 TGGCCAGAAGGTCGTTTTCG 60.883 55.000 0.00 0.00 44.71 3.46
6438 6574 1.200020 CATGGCCAGAAGGTCGTTTTC 59.800 52.381 13.05 0.00 44.71 2.29
6439 6575 1.247567 CATGGCCAGAAGGTCGTTTT 58.752 50.000 13.05 0.00 44.71 2.43
6440 6576 0.110486 ACATGGCCAGAAGGTCGTTT 59.890 50.000 13.05 0.00 44.71 3.60
6441 6577 0.321653 GACATGGCCAGAAGGTCGTT 60.322 55.000 13.05 0.00 44.71 3.85
6442 6578 1.296715 GACATGGCCAGAAGGTCGT 59.703 57.895 13.05 0.00 44.71 4.34
6443 6579 1.450312 GGACATGGCCAGAAGGTCG 60.450 63.158 14.59 0.00 44.71 4.79
6444 6580 1.077429 GGGACATGGCCAGAAGGTC 60.077 63.158 22.13 15.53 41.04 3.85
6445 6581 1.142688 AAGGGACATGGCCAGAAGGT 61.143 55.000 22.13 6.72 37.19 3.50
6446 6582 0.040204 AAAGGGACATGGCCAGAAGG 59.960 55.000 22.13 2.98 38.23 3.46
6447 6583 1.467920 GAAAGGGACATGGCCAGAAG 58.532 55.000 22.13 6.31 0.00 2.85
6448 6584 0.039618 GGAAAGGGACATGGCCAGAA 59.960 55.000 22.13 0.00 0.00 3.02
6449 6585 1.139498 TGGAAAGGGACATGGCCAGA 61.139 55.000 22.13 0.00 0.00 3.86
6450 6586 0.967380 GTGGAAAGGGACATGGCCAG 60.967 60.000 22.13 6.08 0.00 4.85
6451 6587 1.076549 GTGGAAAGGGACATGGCCA 59.923 57.895 22.13 8.56 0.00 5.36
6452 6588 2.046285 CGTGGAAAGGGACATGGCC 61.046 63.158 10.00 10.00 0.00 5.36
6453 6589 2.046285 CCGTGGAAAGGGACATGGC 61.046 63.158 0.00 0.00 37.00 4.40
6454 6590 0.392998 CTCCGTGGAAAGGGACATGG 60.393 60.000 0.00 0.00 43.56 3.66
6455 6591 0.392998 CCTCCGTGGAAAGGGACATG 60.393 60.000 0.00 0.00 35.56 3.21
6456 6592 0.546747 TCCTCCGTGGAAAGGGACAT 60.547 55.000 0.00 0.00 42.94 3.06
6457 6593 1.152204 TCCTCCGTGGAAAGGGACA 60.152 57.895 0.00 0.00 42.94 4.02
6458 6594 3.801620 TCCTCCGTGGAAAGGGAC 58.198 61.111 0.00 0.00 42.94 4.46
6465 6601 2.438021 CCCTATCAATTTCCTCCGTGGA 59.562 50.000 0.00 0.00 44.51 4.02
6466 6602 2.172717 ACCCTATCAATTTCCTCCGTGG 59.827 50.000 0.00 0.00 37.10 4.94
6467 6603 3.560636 ACCCTATCAATTTCCTCCGTG 57.439 47.619 0.00 0.00 0.00 4.94
6468 6604 3.265995 ACAACCCTATCAATTTCCTCCGT 59.734 43.478 0.00 0.00 0.00 4.69
6469 6605 3.877508 GACAACCCTATCAATTTCCTCCG 59.122 47.826 0.00 0.00 0.00 4.63
6470 6606 3.877508 CGACAACCCTATCAATTTCCTCC 59.122 47.826 0.00 0.00 0.00 4.30
6471 6607 3.877508 CCGACAACCCTATCAATTTCCTC 59.122 47.826 0.00 0.00 0.00 3.71
6472 6608 3.886123 CCGACAACCCTATCAATTTCCT 58.114 45.455 0.00 0.00 0.00 3.36
6473 6609 2.357952 GCCGACAACCCTATCAATTTCC 59.642 50.000 0.00 0.00 0.00 3.13
6474 6610 3.279434 AGCCGACAACCCTATCAATTTC 58.721 45.455 0.00 0.00 0.00 2.17
6475 6611 3.279434 GAGCCGACAACCCTATCAATTT 58.721 45.455 0.00 0.00 0.00 1.82
6476 6612 2.741878 CGAGCCGACAACCCTATCAATT 60.742 50.000 0.00 0.00 0.00 2.32
6477 6613 1.202533 CGAGCCGACAACCCTATCAAT 60.203 52.381 0.00 0.00 0.00 2.57
6478 6614 0.174845 CGAGCCGACAACCCTATCAA 59.825 55.000 0.00 0.00 0.00 2.57
6479 6615 0.681887 TCGAGCCGACAACCCTATCA 60.682 55.000 0.00 0.00 0.00 2.15
6480 6616 0.674534 ATCGAGCCGACAACCCTATC 59.325 55.000 0.00 0.00 39.18 2.08
6481 6617 0.389391 CATCGAGCCGACAACCCTAT 59.611 55.000 0.00 0.00 39.18 2.57
6482 6618 0.681887 TCATCGAGCCGACAACCCTA 60.682 55.000 0.00 0.00 39.18 3.53
6483 6619 1.541310 TTCATCGAGCCGACAACCCT 61.541 55.000 0.00 0.00 39.18 4.34
6484 6620 1.079405 TTCATCGAGCCGACAACCC 60.079 57.895 0.00 0.00 39.18 4.11
6485 6621 0.108804 TCTTCATCGAGCCGACAACC 60.109 55.000 0.00 0.00 39.18 3.77
6486 6622 1.855360 GATCTTCATCGAGCCGACAAC 59.145 52.381 0.00 0.00 39.18 3.32
6487 6623 2.209838 GATCTTCATCGAGCCGACAA 57.790 50.000 0.00 0.00 39.18 3.18
6488 6624 3.946950 GATCTTCATCGAGCCGACA 57.053 52.632 0.00 0.00 39.18 4.35
6497 6633 2.354203 GGGGGCACTATCGATCTTCATC 60.354 54.545 0.00 0.00 0.00 2.92
6498 6634 1.625818 GGGGGCACTATCGATCTTCAT 59.374 52.381 0.00 0.00 0.00 2.57
6499 6635 1.048601 GGGGGCACTATCGATCTTCA 58.951 55.000 0.00 0.00 0.00 3.02
6500 6636 0.038159 CGGGGGCACTATCGATCTTC 60.038 60.000 0.00 0.00 0.00 2.87
6501 6637 1.472662 CCGGGGGCACTATCGATCTT 61.473 60.000 0.00 0.00 0.00 2.40
6502 6638 1.908793 CCGGGGGCACTATCGATCT 60.909 63.158 0.00 0.00 0.00 2.75
6503 6639 2.657237 CCGGGGGCACTATCGATC 59.343 66.667 0.00 0.00 0.00 3.69
6525 6661 3.628646 AAGCCACCGGACAGCCATC 62.629 63.158 9.46 0.00 0.00 3.51
6526 6662 2.713531 AAAAGCCACCGGACAGCCAT 62.714 55.000 9.46 0.00 0.00 4.40
6527 6663 2.920076 AAAAAGCCACCGGACAGCCA 62.920 55.000 9.46 0.00 0.00 4.75
6528 6664 2.200337 AAAAAGCCACCGGACAGCC 61.200 57.895 9.46 0.00 0.00 4.85
6529 6665 3.443588 AAAAAGCCACCGGACAGC 58.556 55.556 9.46 7.87 0.00 4.40
6544 6680 2.275318 CAGGCCAAAAGCAACGAAAAA 58.725 42.857 5.01 0.00 46.50 1.94
6545 6681 1.205893 ACAGGCCAAAAGCAACGAAAA 59.794 42.857 5.01 0.00 46.50 2.29
6546 6682 0.820871 ACAGGCCAAAAGCAACGAAA 59.179 45.000 5.01 0.00 46.50 3.46
6547 6683 0.102120 CACAGGCCAAAAGCAACGAA 59.898 50.000 5.01 0.00 46.50 3.85
6548 6684 1.034838 ACACAGGCCAAAAGCAACGA 61.035 50.000 5.01 0.00 46.50 3.85
6549 6685 0.179113 AACACAGGCCAAAAGCAACG 60.179 50.000 5.01 0.00 46.50 4.10
6550 6686 1.134848 TGAACACAGGCCAAAAGCAAC 60.135 47.619 5.01 0.00 46.50 4.17
6551 6687 1.189752 TGAACACAGGCCAAAAGCAA 58.810 45.000 5.01 0.00 46.50 3.91
6552 6688 1.189752 TTGAACACAGGCCAAAAGCA 58.810 45.000 5.01 0.00 46.50 3.91
6553 6689 2.204237 CTTTGAACACAGGCCAAAAGC 58.796 47.619 5.01 0.00 42.60 3.51
6554 6690 2.159057 AGCTTTGAACACAGGCCAAAAG 60.159 45.455 5.01 4.37 30.56 2.27
6555 6691 1.830477 AGCTTTGAACACAGGCCAAAA 59.170 42.857 5.01 0.00 30.56 2.44
6556 6692 1.408702 GAGCTTTGAACACAGGCCAAA 59.591 47.619 5.01 0.00 0.00 3.28
6557 6693 1.032014 GAGCTTTGAACACAGGCCAA 58.968 50.000 5.01 0.00 0.00 4.52
6558 6694 0.183492 AGAGCTTTGAACACAGGCCA 59.817 50.000 5.01 0.00 0.00 5.36
6559 6695 0.877743 GAGAGCTTTGAACACAGGCC 59.122 55.000 0.00 0.00 0.00 5.19
6560 6696 1.889545 AGAGAGCTTTGAACACAGGC 58.110 50.000 0.00 0.00 0.00 4.85
6561 6697 3.737850 AGAAGAGAGCTTTGAACACAGG 58.262 45.455 0.00 0.00 33.61 4.00
6562 6698 4.384247 CGTAGAAGAGAGCTTTGAACACAG 59.616 45.833 0.00 0.00 33.61 3.66
6563 6699 4.037565 TCGTAGAAGAGAGCTTTGAACACA 59.962 41.667 0.00 0.00 33.61 3.72
6564 6700 4.547532 TCGTAGAAGAGAGCTTTGAACAC 58.452 43.478 0.00 0.00 33.61 3.32
6565 6701 4.848562 TCGTAGAAGAGAGCTTTGAACA 57.151 40.909 0.00 0.00 33.61 3.18
6566 6702 7.995463 AATATCGTAGAAGAGAGCTTTGAAC 57.005 36.000 0.00 0.00 43.58 3.18
6567 6703 9.900710 GATAATATCGTAGAAGAGAGCTTTGAA 57.099 33.333 0.00 0.00 43.58 2.69
6568 6704 9.067986 TGATAATATCGTAGAAGAGAGCTTTGA 57.932 33.333 0.00 0.00 43.58 2.69
6569 6705 9.684448 TTGATAATATCGTAGAAGAGAGCTTTG 57.316 33.333 0.00 0.00 43.58 2.77
6570 6706 9.685828 GTTGATAATATCGTAGAAGAGAGCTTT 57.314 33.333 0.00 0.00 43.58 3.51
6571 6707 8.018520 CGTTGATAATATCGTAGAAGAGAGCTT 58.981 37.037 0.00 0.00 43.58 3.74
6572 6708 7.361371 CCGTTGATAATATCGTAGAAGAGAGCT 60.361 40.741 0.00 0.00 43.58 4.09
6573 6709 6.743627 CCGTTGATAATATCGTAGAAGAGAGC 59.256 42.308 0.00 0.00 43.58 4.09
6574 6710 8.030744 TCCGTTGATAATATCGTAGAAGAGAG 57.969 38.462 0.00 0.00 43.58 3.20
6575 6711 7.974482 TCCGTTGATAATATCGTAGAAGAGA 57.026 36.000 0.00 0.00 43.58 3.10
6576 6712 9.279904 GAATCCGTTGATAATATCGTAGAAGAG 57.720 37.037 0.00 0.00 43.58 2.85
6577 6713 7.961283 CGAATCCGTTGATAATATCGTAGAAGA 59.039 37.037 0.00 0.00 43.58 2.87
6578 6714 7.253354 GCGAATCCGTTGATAATATCGTAGAAG 60.253 40.741 0.00 0.00 38.05 2.85
6579 6715 6.525628 GCGAATCCGTTGATAATATCGTAGAA 59.474 38.462 0.00 0.00 38.05 2.10
6580 6716 6.025896 GCGAATCCGTTGATAATATCGTAGA 58.974 40.000 0.00 0.00 38.71 2.59
6581 6717 5.053221 CGCGAATCCGTTGATAATATCGTAG 60.053 44.000 0.00 0.00 38.24 3.51
6582 6718 4.789629 CGCGAATCCGTTGATAATATCGTA 59.210 41.667 0.00 0.00 38.24 3.43
6583 6719 3.606777 CGCGAATCCGTTGATAATATCGT 59.393 43.478 0.00 0.00 38.24 3.73
6584 6720 3.606777 ACGCGAATCCGTTGATAATATCG 59.393 43.478 15.93 0.00 38.47 2.92
6595 6731 1.808390 GTGCCTAACGCGAATCCGT 60.808 57.895 15.93 0.00 44.41 4.69
6596 6732 1.355796 TTGTGCCTAACGCGAATCCG 61.356 55.000 15.93 0.00 42.08 4.18
6597 6733 1.014352 ATTGTGCCTAACGCGAATCC 58.986 50.000 15.93 0.00 42.08 3.01
6598 6734 3.060473 GTCTATTGTGCCTAACGCGAATC 60.060 47.826 15.93 0.00 42.08 2.52
6599 6735 2.864343 GTCTATTGTGCCTAACGCGAAT 59.136 45.455 15.93 3.23 42.08 3.34
6600 6736 2.264813 GTCTATTGTGCCTAACGCGAA 58.735 47.619 15.93 0.00 42.08 4.70
6601 6737 1.202817 TGTCTATTGTGCCTAACGCGA 59.797 47.619 15.93 0.00 42.08 5.87
6602 6738 1.635844 TGTCTATTGTGCCTAACGCG 58.364 50.000 3.53 3.53 42.08 6.01
6603 6739 4.090066 CGATATGTCTATTGTGCCTAACGC 59.910 45.833 0.00 0.00 38.31 4.84
6604 6740 4.090066 GCGATATGTCTATTGTGCCTAACG 59.910 45.833 0.00 0.00 0.00 3.18
6605 6741 4.090066 CGCGATATGTCTATTGTGCCTAAC 59.910 45.833 0.00 0.00 0.00 2.34
6606 6742 4.234574 CGCGATATGTCTATTGTGCCTAA 58.765 43.478 0.00 0.00 0.00 2.69
6607 6743 3.833442 CGCGATATGTCTATTGTGCCTA 58.167 45.455 0.00 0.00 0.00 3.93
6608 6744 2.677199 CGCGATATGTCTATTGTGCCT 58.323 47.619 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.