Multiple sequence alignment - TraesCS1D01G264000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G264000 chr1D 100.000 3900 0 0 1 3900 359780122 359776223 0.000000e+00 7203
1 TraesCS1D01G264000 chr1D 80.191 944 145 30 1072 1987 318853823 318852894 0.000000e+00 669
2 TraesCS1D01G264000 chr1D 84.075 697 99 11 2200 2890 318851515 318850825 0.000000e+00 662
3 TraesCS1D01G264000 chr1D 97.276 257 6 1 1 256 132640190 132640446 5.980000e-118 435
4 TraesCS1D01G264000 chr1A 94.472 2460 75 23 657 3082 459303311 459300879 0.000000e+00 3733
5 TraesCS1D01G264000 chr1A 80.361 942 147 27 1072 1987 404625662 404626591 0.000000e+00 680
6 TraesCS1D01G264000 chr1A 83.333 696 106 9 2200 2890 404627938 404628628 5.500000e-178 634
7 TraesCS1D01G264000 chr1A 88.430 484 52 3 3403 3886 459300211 459299732 7.260000e-162 580
8 TraesCS1D01G264000 chr1B 93.893 1572 48 21 631 2168 481850872 481849315 0.000000e+00 2327
9 TraesCS1D01G264000 chr1B 97.637 931 20 2 2172 3100 481849275 481848345 0.000000e+00 1596
10 TraesCS1D01G264000 chr1B 92.759 511 33 2 3392 3900 481784414 481783906 0.000000e+00 736
11 TraesCS1D01G264000 chr1B 84.075 697 99 11 2200 2890 431404286 431403596 0.000000e+00 662
12 TraesCS1D01G264000 chr1B 98.601 286 4 0 3103 3388 481784673 481784388 1.250000e-139 507
13 TraesCS1D01G264000 chr1B 82.326 215 32 3 659 873 355896824 355896616 8.610000e-42 182
14 TraesCS1D01G264000 chr5D 91.599 369 16 2 253 607 305779005 305779372 2.710000e-136 496
15 TraesCS1D01G264000 chr5D 89.894 376 19 8 253 613 7956248 7956619 2.120000e-127 466
16 TraesCS1D01G264000 chr5D 97.276 257 6 1 1 256 297171692 297171436 5.980000e-118 435
17 TraesCS1D01G264000 chr5D 97.276 257 6 1 1 256 455622114 455622370 5.980000e-118 435
18 TraesCS1D01G264000 chr5D 96.887 257 7 1 1 256 198534285 198534541 2.780000e-116 429
19 TraesCS1D01G264000 chr5D 88.032 376 20 6 253 613 549550420 549550785 4.660000e-114 422
20 TraesCS1D01G264000 chr5D 91.803 122 7 3 495 614 397229742 397229862 2.410000e-37 167
21 TraesCS1D01G264000 chr7D 89.924 397 19 6 253 631 90635090 90634697 3.500000e-135 492
22 TraesCS1D01G264000 chr7D 90.957 376 19 5 253 613 552304330 552304705 3.500000e-135 492
23 TraesCS1D01G264000 chr7D 90.263 380 20 6 253 617 532629440 532629817 7.580000e-132 481
24 TraesCS1D01G264000 chr7D 89.362 376 24 3 253 614 135438881 135439254 3.550000e-125 459
25 TraesCS1D01G264000 chr7D 97.628 253 5 1 1 252 488468904 488469156 2.150000e-117 433
26 TraesCS1D01G264000 chr4D 89.211 380 22 4 253 614 12300800 12300422 1.280000e-124 457
27 TraesCS1D01G264000 chr3D 87.990 408 19 11 253 633 147838093 147838497 4.590000e-124 455
28 TraesCS1D01G264000 chr2D 98.016 252 4 1 1 251 510644777 510644526 1.660000e-118 436
29 TraesCS1D01G264000 chr2D 96.887 257 7 1 1 256 296072942 296072686 2.780000e-116 429
30 TraesCS1D01G264000 chr6D 98.008 251 4 1 1 250 437895945 437896195 5.980000e-118 435
31 TraesCS1D01G264000 chr6D 97.619 252 5 1 1 251 429883571 429883822 7.740000e-117 431
32 TraesCS1D01G264000 chr2B 87.430 358 42 2 253 607 757259618 757259975 3.630000e-110 409
33 TraesCS1D01G264000 chr7B 87.429 350 43 1 266 614 43783313 43782964 6.070000e-108 401
34 TraesCS1D01G264000 chrUn 86.612 366 38 9 253 614 98248151 98247793 1.020000e-105 394
35 TraesCS1D01G264000 chrUn 83.732 209 29 2 659 867 90471987 90472190 3.980000e-45 193
36 TraesCS1D01G264000 chr5A 79.602 402 45 21 254 634 677165698 677165313 1.800000e-63 254
37 TraesCS1D01G264000 chr5A 86.614 127 16 1 482 607 368134217 368134343 5.250000e-29 139
38 TraesCS1D01G264000 chr6A 83.486 218 24 6 659 873 557420189 557419981 3.980000e-45 193
39 TraesCS1D01G264000 chr3B 79.808 208 26 10 667 867 771760204 771760402 1.890000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G264000 chr1D 359776223 359780122 3899 True 7203.0 7203 100.000 1 3900 1 chr1D.!!$R1 3899
1 TraesCS1D01G264000 chr1D 318850825 318853823 2998 True 665.5 669 82.133 1072 2890 2 chr1D.!!$R2 1818
2 TraesCS1D01G264000 chr1A 459299732 459303311 3579 True 2156.5 3733 91.451 657 3886 2 chr1A.!!$R1 3229
3 TraesCS1D01G264000 chr1A 404625662 404628628 2966 False 657.0 680 81.847 1072 2890 2 chr1A.!!$F1 1818
4 TraesCS1D01G264000 chr1B 481848345 481850872 2527 True 1961.5 2327 95.765 631 3100 2 chr1B.!!$R4 2469
5 TraesCS1D01G264000 chr1B 431403596 431404286 690 True 662.0 662 84.075 2200 2890 1 chr1B.!!$R2 690
6 TraesCS1D01G264000 chr1B 481783906 481784673 767 True 621.5 736 95.680 3103 3900 2 chr1B.!!$R3 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.034863 AGACGACACTCTCCCCTCTC 60.035 60.0 0.00 0.00 0.00 3.20 F
194 195 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.0 3.79 3.79 38.76 3.96 F
214 215 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.0 15.81 0.00 43.20 4.57 F
457 458 0.248702 GGAGAGAAAGCGCTAGACGG 60.249 60.0 12.05 0.00 43.93 4.79 F
495 496 0.461135 AGGGCGCTGCAATTTATTGG 59.539 50.0 7.64 0.00 38.21 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 1102 1.692749 AGCGGGCCAGGAGGAATAA 60.693 57.895 4.39 0.00 36.89 1.40 R
2188 3416 1.499056 CACAGCTGCATGGTCGAAC 59.501 57.895 15.27 0.00 0.00 3.95 R
2296 3630 1.163554 GGTAGAACGTCGACAGGTCT 58.836 55.000 24.14 24.14 0.00 3.85 R
2473 3807 1.591594 CGTGACGGTGTTGCTCTGT 60.592 57.895 0.00 0.00 0.00 3.41 R
2916 4250 3.752747 TGATGTTGTAATGTCTGGTGCAG 59.247 43.478 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.428544 AGCTCTACTGGATCGTGAGT 57.571 50.000 0.00 0.00 0.00 3.41
21 22 2.729194 AGCTCTACTGGATCGTGAGTT 58.271 47.619 0.00 0.00 0.00 3.01
22 23 2.685897 AGCTCTACTGGATCGTGAGTTC 59.314 50.000 0.00 0.00 0.00 3.01
23 24 2.539953 GCTCTACTGGATCGTGAGTTCG 60.540 54.545 0.00 0.00 0.00 3.95
24 25 1.400846 TCTACTGGATCGTGAGTTCGC 59.599 52.381 0.00 0.00 0.00 4.70
42 43 3.371063 GGGACGTCACCGAGCTGA 61.371 66.667 18.91 0.00 37.88 4.26
43 44 2.649034 GGACGTCACCGAGCTGAA 59.351 61.111 18.91 0.00 37.88 3.02
44 45 1.733399 GGACGTCACCGAGCTGAAC 60.733 63.158 18.91 0.00 37.88 3.18
45 46 2.050351 ACGTCACCGAGCTGAACG 60.050 61.111 0.00 0.00 37.88 3.95
46 47 2.050351 CGTCACCGAGCTGAACGT 60.050 61.111 0.00 0.00 35.63 3.99
47 48 2.365068 CGTCACCGAGCTGAACGTG 61.365 63.158 0.00 0.00 35.63 4.49
48 49 1.299926 GTCACCGAGCTGAACGTGT 60.300 57.895 0.00 0.00 0.00 4.49
49 50 1.299850 TCACCGAGCTGAACGTGTG 60.300 57.895 0.00 0.00 35.24 3.82
50 51 2.661866 ACCGAGCTGAACGTGTGC 60.662 61.111 0.00 0.00 0.00 4.57
51 52 2.356313 CCGAGCTGAACGTGTGCT 60.356 61.111 9.46 9.46 40.02 4.40
52 53 2.661566 CCGAGCTGAACGTGTGCTG 61.662 63.158 13.62 7.28 37.16 4.41
53 54 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
54 55 1.215014 CGAGCTGAACGTGTGCTGAA 61.215 55.000 13.62 0.00 37.16 3.02
55 56 0.233332 GAGCTGAACGTGTGCTGAAC 59.767 55.000 13.62 0.00 37.16 3.18
56 57 1.083401 GCTGAACGTGTGCTGAACG 60.083 57.895 0.00 5.11 46.32 3.95
57 58 1.083401 CTGAACGTGTGCTGAACGC 60.083 57.895 0.00 0.00 44.80 4.84
62 63 3.414700 GTGTGCTGAACGCGGAGG 61.415 66.667 12.47 0.00 43.27 4.30
63 64 3.923864 TGTGCTGAACGCGGAGGT 61.924 61.111 12.47 0.00 43.27 3.85
64 65 3.414700 GTGCTGAACGCGGAGGTG 61.415 66.667 12.47 0.00 43.27 4.00
75 76 2.505557 GGAGGTGCCGTACGTTCG 60.506 66.667 15.21 7.68 0.00 3.95
82 83 2.256158 CCGTACGTTCGGTGCTGA 59.744 61.111 23.71 0.00 44.77 4.26
83 84 1.800315 CCGTACGTTCGGTGCTGAG 60.800 63.158 23.71 0.00 44.77 3.35
84 85 1.800315 CGTACGTTCGGTGCTGAGG 60.800 63.158 7.22 0.00 0.00 3.86
85 86 1.582968 GTACGTTCGGTGCTGAGGA 59.417 57.895 0.00 0.00 0.00 3.71
86 87 0.172803 GTACGTTCGGTGCTGAGGAT 59.827 55.000 0.00 0.00 0.00 3.24
87 88 0.454600 TACGTTCGGTGCTGAGGATC 59.545 55.000 0.00 0.00 0.00 3.36
88 89 1.874019 CGTTCGGTGCTGAGGATCG 60.874 63.158 0.00 0.00 38.61 3.69
89 90 1.519455 GTTCGGTGCTGAGGATCGG 60.519 63.158 6.82 0.00 46.81 4.18
90 91 1.982395 TTCGGTGCTGAGGATCGGT 60.982 57.895 6.82 0.00 45.47 4.69
91 92 1.945354 TTCGGTGCTGAGGATCGGTC 61.945 60.000 6.82 0.00 45.47 4.79
92 93 2.105128 GGTGCTGAGGATCGGTCG 59.895 66.667 0.00 0.00 45.47 4.79
93 94 2.415608 GGTGCTGAGGATCGGTCGA 61.416 63.158 0.00 0.00 45.47 4.20
94 95 1.736586 GTGCTGAGGATCGGTCGAT 59.263 57.895 5.49 5.49 45.47 3.59
95 96 0.318275 GTGCTGAGGATCGGTCGATC 60.318 60.000 21.07 21.07 45.47 3.69
103 104 1.744374 GATCGGTCGATCGTGAAGAC 58.256 55.000 19.01 5.12 41.09 3.01
105 106 1.134075 CGGTCGATCGTGAAGACGT 59.866 57.895 15.94 0.00 46.20 4.34
106 107 0.371301 CGGTCGATCGTGAAGACGTA 59.629 55.000 15.94 0.00 46.20 3.57
107 108 1.807738 GGTCGATCGTGAAGACGTAC 58.192 55.000 15.94 2.00 46.20 3.67
108 109 1.440790 GTCGATCGTGAAGACGTACG 58.559 55.000 15.01 15.01 46.20 3.67
114 115 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
115 116 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
116 117 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
117 118 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
118 119 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
119 120 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
120 121 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
121 122 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
122 123 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
123 124 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
124 125 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
125 126 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
126 127 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
127 128 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
128 129 1.796459 GACTACATCAACCGCGTTGTT 59.204 47.619 16.97 7.89 43.23 2.83
129 130 2.988493 GACTACATCAACCGCGTTGTTA 59.012 45.455 16.97 9.15 43.23 2.41
130 131 3.592059 ACTACATCAACCGCGTTGTTAT 58.408 40.909 16.97 5.37 43.23 1.89
131 132 4.746729 ACTACATCAACCGCGTTGTTATA 58.253 39.130 16.97 6.05 43.23 0.98
132 133 5.170021 ACTACATCAACCGCGTTGTTATAA 58.830 37.500 16.97 2.99 43.23 0.98
133 134 4.330740 ACATCAACCGCGTTGTTATAAC 57.669 40.909 16.97 8.75 43.23 1.89
134 135 3.181528 ACATCAACCGCGTTGTTATAACG 60.182 43.478 9.79 9.79 43.23 3.18
141 142 2.067459 CGTTGTTATAACGCTTCCGC 57.933 50.000 10.92 0.00 36.82 5.54
142 143 1.657094 CGTTGTTATAACGCTTCCGCT 59.343 47.619 10.92 0.00 36.82 5.52
143 144 2.093152 CGTTGTTATAACGCTTCCGCTT 59.907 45.455 10.92 0.00 36.82 4.68
144 145 3.304026 CGTTGTTATAACGCTTCCGCTTA 59.696 43.478 10.92 0.00 36.82 3.09
145 146 4.571889 GTTGTTATAACGCTTCCGCTTAC 58.428 43.478 10.92 0.00 38.22 2.34
146 147 2.853594 TGTTATAACGCTTCCGCTTACG 59.146 45.455 10.92 0.00 38.22 3.18
169 170 1.922570 TACGAGGGTACGTAGACGAC 58.077 55.000 9.41 2.90 44.72 4.34
170 171 0.037326 ACGAGGGTACGTAGACGACA 60.037 55.000 9.41 0.00 44.72 4.35
171 172 0.371645 CGAGGGTACGTAGACGACAC 59.628 60.000 9.41 6.10 43.02 3.67
172 173 1.731720 GAGGGTACGTAGACGACACT 58.268 55.000 9.41 8.85 43.02 3.55
173 174 1.663135 GAGGGTACGTAGACGACACTC 59.337 57.143 9.41 13.54 40.11 3.51
174 175 1.277557 AGGGTACGTAGACGACACTCT 59.722 52.381 9.41 8.40 43.02 3.24
175 176 1.663135 GGGTACGTAGACGACACTCTC 59.337 57.143 9.41 0.00 43.02 3.20
176 177 1.663135 GGTACGTAGACGACACTCTCC 59.337 57.143 9.41 0.00 43.02 3.71
177 178 1.663135 GTACGTAGACGACACTCTCCC 59.337 57.143 9.41 0.00 43.02 4.30
178 179 0.676151 ACGTAGACGACACTCTCCCC 60.676 60.000 9.41 0.00 43.02 4.81
179 180 0.392729 CGTAGACGACACTCTCCCCT 60.393 60.000 0.00 0.00 43.02 4.79
180 181 1.381522 GTAGACGACACTCTCCCCTC 58.618 60.000 0.00 0.00 0.00 4.30
181 182 1.065272 GTAGACGACACTCTCCCCTCT 60.065 57.143 0.00 0.00 0.00 3.69
182 183 0.034863 AGACGACACTCTCCCCTCTC 60.035 60.000 0.00 0.00 0.00 3.20
183 184 1.370587 GACGACACTCTCCCCTCTCG 61.371 65.000 0.00 0.00 0.00 4.04
184 185 1.377463 CGACACTCTCCCCTCTCGT 60.377 63.158 0.00 0.00 0.00 4.18
185 186 0.961358 CGACACTCTCCCCTCTCGTT 60.961 60.000 0.00 0.00 0.00 3.85
186 187 0.528470 GACACTCTCCCCTCTCGTTG 59.472 60.000 0.00 0.00 0.00 4.10
187 188 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
188 189 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
189 190 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
190 191 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
191 192 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
192 193 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
193 194 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
194 195 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
195 196 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
196 197 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
197 198 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
198 199 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
199 200 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
200 201 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
201 202 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
202 203 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
203 204 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
204 205 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
205 206 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
206 207 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
207 208 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
208 209 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
209 210 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
210 211 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
211 212 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
212 213 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
213 214 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
214 215 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
224 225 4.626225 GCGTGTGCGTTGGATTTT 57.374 50.000 0.00 0.00 40.81 1.82
225 226 2.880091 GCGTGTGCGTTGGATTTTT 58.120 47.368 0.00 0.00 40.81 1.94
247 248 6.973460 TTTTTAAATTACTCCGTTCCCCAA 57.027 33.333 0.00 0.00 0.00 4.12
248 249 5.963176 TTTAAATTACTCCGTTCCCCAAC 57.037 39.130 0.00 0.00 0.00 3.77
249 250 3.512219 AAATTACTCCGTTCCCCAACA 57.488 42.857 0.00 0.00 32.14 3.33
250 251 2.781681 ATTACTCCGTTCCCCAACAG 57.218 50.000 0.00 0.00 32.14 3.16
251 252 1.426751 TTACTCCGTTCCCCAACAGT 58.573 50.000 0.00 0.00 32.14 3.55
252 253 0.971386 TACTCCGTTCCCCAACAGTC 59.029 55.000 0.00 0.00 32.14 3.51
253 254 1.374252 CTCCGTTCCCCAACAGTCG 60.374 63.158 0.00 0.00 32.14 4.18
254 255 3.047877 CCGTTCCCCAACAGTCGC 61.048 66.667 0.00 0.00 32.14 5.19
255 256 2.280524 CGTTCCCCAACAGTCGCA 60.281 61.111 0.00 0.00 32.14 5.10
256 257 2.317609 CGTTCCCCAACAGTCGCAG 61.318 63.158 0.00 0.00 32.14 5.18
257 258 2.281484 TTCCCCAACAGTCGCAGC 60.281 61.111 0.00 0.00 0.00 5.25
258 259 4.680237 TCCCCAACAGTCGCAGCG 62.680 66.667 9.06 9.06 0.00 5.18
259 260 4.988598 CCCCAACAGTCGCAGCGT 62.989 66.667 15.93 0.00 0.00 5.07
260 261 3.414700 CCCAACAGTCGCAGCGTC 61.415 66.667 15.93 9.67 0.00 5.19
261 262 3.767230 CCAACAGTCGCAGCGTCG 61.767 66.667 15.93 8.37 0.00 5.12
262 263 4.415501 CAACAGTCGCAGCGTCGC 62.416 66.667 15.93 9.80 0.00 5.19
263 264 4.942481 AACAGTCGCAGCGTCGCA 62.942 61.111 21.09 0.00 0.00 5.10
293 294 3.998672 GTCCTGGGCGGTGTCGAA 61.999 66.667 0.00 0.00 39.00 3.71
294 295 3.691342 TCCTGGGCGGTGTCGAAG 61.691 66.667 0.00 0.00 39.00 3.79
295 296 4.760047 CCTGGGCGGTGTCGAAGG 62.760 72.222 0.00 0.00 39.00 3.46
296 297 4.003788 CTGGGCGGTGTCGAAGGT 62.004 66.667 0.00 0.00 39.00 3.50
297 298 3.530910 CTGGGCGGTGTCGAAGGTT 62.531 63.158 0.00 0.00 39.00 3.50
298 299 2.741211 GGGCGGTGTCGAAGGTTC 60.741 66.667 0.00 0.00 39.00 3.62
299 300 2.741211 GGCGGTGTCGAAGGTTCC 60.741 66.667 0.00 0.00 39.00 3.62
300 301 3.110178 GCGGTGTCGAAGGTTCCG 61.110 66.667 9.50 9.50 43.37 4.30
301 302 2.646719 CGGTGTCGAAGGTTCCGA 59.353 61.111 8.56 0.00 43.22 4.55
302 303 1.443872 CGGTGTCGAAGGTTCCGAG 60.444 63.158 8.56 0.00 43.22 4.63
303 304 1.080025 GGTGTCGAAGGTTCCGAGG 60.080 63.158 0.00 0.00 36.66 4.63
304 305 1.737008 GTGTCGAAGGTTCCGAGGC 60.737 63.158 0.00 0.00 36.66 4.70
305 306 2.125633 GTCGAAGGTTCCGAGGCC 60.126 66.667 0.00 0.00 36.66 5.19
306 307 2.602267 TCGAAGGTTCCGAGGCCA 60.602 61.111 5.01 0.00 0.00 5.36
307 308 2.211410 TCGAAGGTTCCGAGGCCAA 61.211 57.895 5.01 0.00 0.00 4.52
308 309 1.741770 CGAAGGTTCCGAGGCCAAG 60.742 63.158 5.01 0.00 0.00 3.61
309 310 1.377333 GAAGGTTCCGAGGCCAAGG 60.377 63.158 5.01 8.04 0.00 3.61
310 311 3.569200 AAGGTTCCGAGGCCAAGGC 62.569 63.158 5.01 1.52 41.06 4.35
337 338 4.891727 CGCCCAACCGGATCGAGG 62.892 72.222 9.46 1.97 32.13 4.63
339 340 4.891727 CCCAACCGGATCGAGGCG 62.892 72.222 9.46 0.00 0.00 5.52
340 341 4.891727 CCAACCGGATCGAGGCGG 62.892 72.222 9.46 6.59 0.00 6.13
341 342 3.833645 CAACCGGATCGAGGCGGA 61.834 66.667 9.46 0.00 0.00 5.54
342 343 3.528370 AACCGGATCGAGGCGGAG 61.528 66.667 9.46 0.00 0.00 4.63
343 344 4.816984 ACCGGATCGAGGCGGAGT 62.817 66.667 9.46 0.00 0.00 3.85
344 345 2.593725 CCGGATCGAGGCGGAGTA 60.594 66.667 0.00 0.00 0.00 2.59
345 346 2.618219 CCGGATCGAGGCGGAGTAG 61.618 68.421 0.00 0.00 0.00 2.57
346 347 2.618219 CGGATCGAGGCGGAGTAGG 61.618 68.421 0.00 0.00 0.00 3.18
347 348 1.528776 GGATCGAGGCGGAGTAGGT 60.529 63.158 0.00 0.00 0.00 3.08
348 349 1.655329 GATCGAGGCGGAGTAGGTG 59.345 63.158 0.00 0.00 0.00 4.00
349 350 2.409241 GATCGAGGCGGAGTAGGTGC 62.409 65.000 0.00 0.00 0.00 5.01
355 356 4.189188 CGGAGTAGGTGCCGGACG 62.189 72.222 5.05 0.00 43.67 4.79
356 357 3.834799 GGAGTAGGTGCCGGACGG 61.835 72.222 5.05 6.35 38.57 4.79
357 358 2.753043 GAGTAGGTGCCGGACGGA 60.753 66.667 15.99 0.00 37.50 4.69
358 359 3.061260 GAGTAGGTGCCGGACGGAC 62.061 68.421 15.99 9.55 37.50 4.79
359 360 4.487412 GTAGGTGCCGGACGGACG 62.487 72.222 15.99 0.00 37.50 4.79
390 391 3.846430 CGGTAGCCGGAACCTCCC 61.846 72.222 20.47 2.44 44.15 4.30
391 392 3.477346 GGTAGCCGGAACCTCCCC 61.477 72.222 16.94 0.82 33.97 4.81
392 393 3.846430 GTAGCCGGAACCTCCCCG 61.846 72.222 5.05 0.00 46.10 5.73
434 435 4.634133 GTGGTGTCGTGTCGGCGA 62.634 66.667 4.99 4.99 38.68 5.54
447 448 4.796225 GGCGACGAGGAGAGAAAG 57.204 61.111 0.00 0.00 0.00 2.62
448 449 1.517475 GGCGACGAGGAGAGAAAGC 60.517 63.158 0.00 0.00 0.00 3.51
449 450 1.870016 GCGACGAGGAGAGAAAGCG 60.870 63.158 0.00 0.00 0.00 4.68
450 451 1.870016 CGACGAGGAGAGAAAGCGC 60.870 63.158 0.00 0.00 0.00 5.92
451 452 1.509004 GACGAGGAGAGAAAGCGCT 59.491 57.895 2.64 2.64 0.00 5.92
452 453 0.733729 GACGAGGAGAGAAAGCGCTA 59.266 55.000 12.05 0.00 0.00 4.26
453 454 0.736053 ACGAGGAGAGAAAGCGCTAG 59.264 55.000 12.05 0.00 0.00 3.42
454 455 1.018148 CGAGGAGAGAAAGCGCTAGA 58.982 55.000 12.05 0.00 0.00 2.43
455 456 1.268335 CGAGGAGAGAAAGCGCTAGAC 60.268 57.143 12.05 5.20 0.00 2.59
457 458 0.248702 GGAGAGAAAGCGCTAGACGG 60.249 60.000 12.05 0.00 43.93 4.79
458 459 0.733729 GAGAGAAAGCGCTAGACGGA 59.266 55.000 12.05 0.00 43.93 4.69
459 460 0.736053 AGAGAAAGCGCTAGACGGAG 59.264 55.000 12.05 0.00 43.93 4.63
460 461 0.868177 GAGAAAGCGCTAGACGGAGC 60.868 60.000 12.05 0.00 43.93 4.70
466 467 4.128139 GCTAGACGGAGCGAGAGA 57.872 61.111 0.00 0.00 31.57 3.10
467 468 1.938861 GCTAGACGGAGCGAGAGAG 59.061 63.158 0.00 0.00 31.57 3.20
468 469 0.531090 GCTAGACGGAGCGAGAGAGA 60.531 60.000 0.00 0.00 31.57 3.10
469 470 1.497991 CTAGACGGAGCGAGAGAGAG 58.502 60.000 0.00 0.00 0.00 3.20
470 471 0.531090 TAGACGGAGCGAGAGAGAGC 60.531 60.000 0.00 0.00 0.00 4.09
471 472 3.163110 GACGGAGCGAGAGAGAGCG 62.163 68.421 0.00 0.00 38.61 5.03
472 473 3.947841 CGGAGCGAGAGAGAGCGG 61.948 72.222 0.00 0.00 38.61 5.52
473 474 4.264638 GGAGCGAGAGAGAGCGGC 62.265 72.222 0.00 0.00 38.61 6.53
474 475 3.513438 GAGCGAGAGAGAGCGGCA 61.513 66.667 1.45 0.00 38.61 5.69
475 476 3.468266 GAGCGAGAGAGAGCGGCAG 62.468 68.421 1.45 0.00 38.61 4.85
476 477 3.513438 GCGAGAGAGAGCGGCAGA 61.513 66.667 1.45 0.00 0.00 4.26
477 478 2.715005 CGAGAGAGAGCGGCAGAG 59.285 66.667 1.45 0.00 0.00 3.35
478 479 2.833533 CGAGAGAGAGCGGCAGAGG 61.834 68.421 1.45 0.00 0.00 3.69
479 480 2.441901 AGAGAGAGCGGCAGAGGG 60.442 66.667 1.45 0.00 0.00 4.30
480 481 4.219999 GAGAGAGCGGCAGAGGGC 62.220 72.222 1.45 0.00 43.74 5.19
490 491 3.281240 CAGAGGGCGCTGCAATTT 58.719 55.556 8.56 0.00 0.00 1.82
491 492 2.481212 CAGAGGGCGCTGCAATTTA 58.519 52.632 8.56 0.00 0.00 1.40
492 493 1.027357 CAGAGGGCGCTGCAATTTAT 58.973 50.000 8.56 0.00 0.00 1.40
493 494 1.406539 CAGAGGGCGCTGCAATTTATT 59.593 47.619 8.56 0.00 0.00 1.40
494 495 1.406539 AGAGGGCGCTGCAATTTATTG 59.593 47.619 8.56 0.00 40.66 1.90
495 496 0.461135 AGGGCGCTGCAATTTATTGG 59.539 50.000 7.64 0.00 38.21 3.16
496 497 1.153597 GGGCGCTGCAATTTATTGGC 61.154 55.000 7.64 0.26 38.21 4.52
497 498 1.481819 GGCGCTGCAATTTATTGGCG 61.482 55.000 7.64 16.52 45.05 5.69
498 499 1.919340 CGCTGCAATTTATTGGCGC 59.081 52.632 0.00 0.00 39.91 6.53
499 500 1.800332 CGCTGCAATTTATTGGCGCG 61.800 55.000 0.00 0.00 39.91 6.86
500 501 1.919340 CTGCAATTTATTGGCGCGC 59.081 52.632 25.94 25.94 38.21 6.86
501 502 1.481819 CTGCAATTTATTGGCGCGCC 61.482 55.000 42.35 42.35 38.21 6.53
502 503 1.518133 GCAATTTATTGGCGCGCCA 60.518 52.632 46.88 46.88 45.63 5.69
515 516 4.633596 CGCCAAATCTAGCGCGCG 62.634 66.667 28.44 28.44 46.50 6.86
516 517 3.261951 GCCAAATCTAGCGCGCGA 61.262 61.111 37.18 21.03 0.00 5.87
517 518 2.923854 CCAAATCTAGCGCGCGAG 59.076 61.111 37.18 31.86 0.00 5.03
531 532 2.176792 CGAGCTGCCGCCTTTTTC 59.823 61.111 0.00 0.00 36.60 2.29
532 533 2.568612 GAGCTGCCGCCTTTTTCC 59.431 61.111 0.00 0.00 36.60 3.13
533 534 3.328288 GAGCTGCCGCCTTTTTCCG 62.328 63.158 0.00 0.00 36.60 4.30
542 543 4.142047 CTTTTTCCGCGCGCGCTA 62.142 61.111 45.97 33.52 39.32 4.26
543 544 4.142047 TTTTTCCGCGCGCGCTAG 62.142 61.111 45.97 37.06 39.32 3.42
554 555 3.497031 GCGCTAGTTTCCCGCCAC 61.497 66.667 0.00 0.00 41.72 5.01
555 556 2.818274 CGCTAGTTTCCCGCCACC 60.818 66.667 0.00 0.00 0.00 4.61
556 557 2.818274 GCTAGTTTCCCGCCACCG 60.818 66.667 0.00 0.00 0.00 4.94
557 558 2.818274 CTAGTTTCCCGCCACCGC 60.818 66.667 0.00 0.00 0.00 5.68
558 559 3.310860 CTAGTTTCCCGCCACCGCT 62.311 63.158 0.00 0.00 0.00 5.52
559 560 3.599285 TAGTTTCCCGCCACCGCTG 62.599 63.158 0.00 0.00 0.00 5.18
574 575 4.776953 CTGGAGCGCGCGAAAACG 62.777 66.667 37.18 14.36 0.00 3.60
576 577 4.771812 GGAGCGCGCGAAAACGTC 62.772 66.667 37.18 15.71 34.88 4.34
577 578 4.771812 GAGCGCGCGAAAACGTCC 62.772 66.667 37.18 13.39 34.88 4.79
597 598 4.596180 CGCGCGCTAAATGCCCAG 62.596 66.667 30.48 5.07 38.78 4.45
598 599 3.508840 GCGCGCTAAATGCCCAGT 61.509 61.111 26.67 0.00 38.78 4.00
599 600 3.051392 GCGCGCTAAATGCCCAGTT 62.051 57.895 26.67 0.00 38.78 3.16
600 601 1.506262 CGCGCTAAATGCCCAGTTT 59.494 52.632 5.56 0.00 38.78 2.66
601 602 0.730265 CGCGCTAAATGCCCAGTTTA 59.270 50.000 5.56 0.00 38.78 2.01
602 603 1.531058 CGCGCTAAATGCCCAGTTTAC 60.531 52.381 5.56 0.00 38.78 2.01
603 604 1.202256 GCGCTAAATGCCCAGTTTACC 60.202 52.381 0.00 0.00 38.78 2.85
604 605 1.063469 CGCTAAATGCCCAGTTTACCG 59.937 52.381 0.00 0.00 38.78 4.02
605 606 1.202256 GCTAAATGCCCAGTTTACCGC 60.202 52.381 0.00 0.00 35.15 5.68
606 607 1.063469 CTAAATGCCCAGTTTACCGCG 59.937 52.381 0.00 0.00 0.00 6.46
607 608 0.606944 AAATGCCCAGTTTACCGCGA 60.607 50.000 8.23 0.00 0.00 5.87
608 609 1.024579 AATGCCCAGTTTACCGCGAG 61.025 55.000 8.23 0.00 0.00 5.03
629 630 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
643 644 5.132648 TGGAGATGCTCTTAACCCACATATT 59.867 40.000 0.00 0.00 0.00 1.28
645 646 7.147391 TGGAGATGCTCTTAACCCACATATTTA 60.147 37.037 0.00 0.00 0.00 1.40
646 647 7.173390 GGAGATGCTCTTAACCCACATATTTAC 59.827 40.741 0.00 0.00 0.00 2.01
647 648 7.806180 AGATGCTCTTAACCCACATATTTACT 58.194 34.615 0.00 0.00 0.00 2.24
648 649 8.934697 AGATGCTCTTAACCCACATATTTACTA 58.065 33.333 0.00 0.00 0.00 1.82
649 650 9.726438 GATGCTCTTAACCCACATATTTACTAT 57.274 33.333 0.00 0.00 0.00 2.12
765 777 2.287248 GGTTTGACTTGAGCAGTGCTTC 60.287 50.000 20.80 13.27 39.88 3.86
869 895 4.030216 ACCTTCCAAAAACACCATGACTT 58.970 39.130 0.00 0.00 0.00 3.01
873 899 6.385649 TTCCAAAAACACCATGACTTCTAC 57.614 37.500 0.00 0.00 0.00 2.59
874 900 4.513692 TCCAAAAACACCATGACTTCTACG 59.486 41.667 0.00 0.00 0.00 3.51
875 901 4.320202 CCAAAAACACCATGACTTCTACGG 60.320 45.833 0.00 0.00 0.00 4.02
876 902 4.345859 AAAACACCATGACTTCTACGGA 57.654 40.909 0.00 0.00 0.00 4.69
877 903 3.594603 AACACCATGACTTCTACGGAG 57.405 47.619 0.00 0.00 0.00 4.63
879 905 3.693807 ACACCATGACTTCTACGGAGTA 58.306 45.455 0.00 0.00 45.11 2.59
967 993 2.836154 GGGACACTGCACCCTCAA 59.164 61.111 2.83 0.00 42.56 3.02
1008 1059 1.314534 CCATCTCAAACATGGCGGCA 61.315 55.000 16.34 16.34 34.59 5.69
1044 1095 1.316706 CGCTCTCCTTCCTCCTCGTT 61.317 60.000 0.00 0.00 0.00 3.85
1051 1102 1.455248 CTTCCTCCTCGTTCTCTCGT 58.545 55.000 0.00 0.00 0.00 4.18
1053 1104 2.775911 TCCTCCTCGTTCTCTCGTTA 57.224 50.000 0.00 0.00 0.00 3.18
1893 1986 3.706594 AGAAGTATGTCATGATGGTCGGT 59.293 43.478 0.00 0.00 0.00 4.69
1994 2203 4.320494 CGGTGAGTTGCTCAATTTAGCTTT 60.320 41.667 12.62 0.00 42.46 3.51
2000 2209 8.076178 TGAGTTGCTCAATTTAGCTTTCTTTAC 58.924 33.333 12.62 1.14 43.19 2.01
2012 2221 5.870706 AGCTTTCTTTACCTTTACTCTGCT 58.129 37.500 0.00 0.00 0.00 4.24
2050 2416 1.812571 AGTTTGGCCGTGCTATTTCTG 59.187 47.619 0.00 0.00 0.00 3.02
2117 3309 4.762251 GCCCAACATGTTCTAGAACTTCTT 59.238 41.667 30.47 18.26 41.67 2.52
2188 3416 1.359459 GCGCGTCCTAACCTTGAAGG 61.359 60.000 10.24 10.24 42.49 3.46
2464 3798 2.662596 CTCTACAACCGGCTGCCA 59.337 61.111 20.29 0.00 0.00 4.92
2557 3891 4.479993 GGCTGCTCCATCGTGGCT 62.480 66.667 0.00 0.00 37.47 4.75
2743 4077 1.208358 CGCCGAGTACGACAACTCA 59.792 57.895 14.44 0.00 45.13 3.41
2916 4250 4.669206 ACTGATCCATCATCTGACTCAC 57.331 45.455 0.00 0.00 36.02 3.51
3100 4554 7.691993 ATAACTTATGGGTGGTAGAATGACT 57.308 36.000 0.00 0.00 0.00 3.41
3101 4555 5.615925 ACTTATGGGTGGTAGAATGACTC 57.384 43.478 0.00 0.00 0.00 3.36
3245 4975 5.569355 TGTGCTAAAATGAGGGAGAAATCA 58.431 37.500 0.00 0.00 0.00 2.57
3323 5054 5.048083 TGTGCTAAATGAGGGACAAATTGAC 60.048 40.000 0.00 0.00 31.30 3.18
3363 5095 2.076100 CACTTCTATCTGCCGCAAACA 58.924 47.619 0.00 0.00 0.00 2.83
3364 5096 2.076863 ACTTCTATCTGCCGCAAACAC 58.923 47.619 0.00 0.00 0.00 3.32
3365 5097 2.076100 CTTCTATCTGCCGCAAACACA 58.924 47.619 0.00 0.00 0.00 3.72
3366 5098 1.438651 TCTATCTGCCGCAAACACAC 58.561 50.000 0.00 0.00 0.00 3.82
3367 5099 1.155889 CTATCTGCCGCAAACACACA 58.844 50.000 0.00 0.00 0.00 3.72
3368 5100 0.871722 TATCTGCCGCAAACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3369 5101 1.100463 ATCTGCCGCAAACACACACA 61.100 50.000 0.00 0.00 0.00 3.72
3370 5102 1.586042 CTGCCGCAAACACACACAC 60.586 57.895 0.00 0.00 0.00 3.82
3371 5103 2.263771 CTGCCGCAAACACACACACA 62.264 55.000 0.00 0.00 0.00 3.72
3372 5104 1.871789 GCCGCAAACACACACACAC 60.872 57.895 0.00 0.00 0.00 3.82
3373 5105 1.503994 CCGCAAACACACACACACA 59.496 52.632 0.00 0.00 0.00 3.72
3374 5106 0.796491 CCGCAAACACACACACACAC 60.796 55.000 0.00 0.00 0.00 3.82
3375 5107 0.110010 CGCAAACACACACACACACA 60.110 50.000 0.00 0.00 0.00 3.72
3376 5108 1.335935 GCAAACACACACACACACAC 58.664 50.000 0.00 0.00 0.00 3.82
3377 5109 1.335415 GCAAACACACACACACACACA 60.335 47.619 0.00 0.00 0.00 3.72
3378 5110 2.315011 CAAACACACACACACACACAC 58.685 47.619 0.00 0.00 0.00 3.82
3379 5111 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
3380 5112 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3381 5113 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3382 5114 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3383 5115 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3384 5116 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3385 5117 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3386 5118 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3387 5119 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3388 5120 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3389 5121 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3390 5122 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3391 5123 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3392 5124 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3393 5125 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3394 5126 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3395 5127 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3396 5128 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3397 5129 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3398 5130 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3399 5131 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3400 5132 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3401 5133 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3402 5134 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3403 5135 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3404 5136 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3405 5137 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3406 5138 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3407 5139 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3408 5140 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3473 5221 5.490139 ACAATCTAGCACATGCACATTAC 57.510 39.130 6.64 0.00 45.16 1.89
3475 5223 5.163723 ACAATCTAGCACATGCACATTACAC 60.164 40.000 6.64 0.00 45.16 2.90
3563 5311 8.514594 CCTAAACATCGTATATTTCATGGCATT 58.485 33.333 0.00 0.00 0.00 3.56
3633 5381 6.317088 ACGACATTGTCATTGATCAATTGAC 58.683 36.000 26.92 26.92 32.85 3.18
3664 5412 3.449528 TGCAGATTGATTCTCTCCTCG 57.550 47.619 0.00 0.00 29.93 4.63
3760 5508 3.620472 GCCAAGGGTAAAGTCACCGATAA 60.620 47.826 0.00 0.00 39.69 1.75
3763 5511 4.467198 AGGGTAAAGTCACCGATAAGTG 57.533 45.455 0.00 0.00 39.69 3.16
3806 5556 2.955660 GTGTTGTTCTTCCATGGAACCA 59.044 45.455 23.63 16.29 41.42 3.67
3814 5564 5.036117 TCTTCCATGGAACCATTAGTAGC 57.964 43.478 23.63 0.00 33.90 3.58
3850 5600 1.065199 CAGGCGGCCCATACATATGAT 60.065 52.381 17.02 0.00 35.75 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.729194 ACTCACGATCCAGTAGAGCTT 58.271 47.619 0.00 0.00 0.00 3.74
1 2 2.428544 ACTCACGATCCAGTAGAGCT 57.571 50.000 0.00 0.00 0.00 4.09
2 3 2.539953 CGAACTCACGATCCAGTAGAGC 60.540 54.545 0.00 0.00 35.09 4.09
3 4 2.539953 GCGAACTCACGATCCAGTAGAG 60.540 54.545 0.00 0.00 35.09 2.43
4 5 1.400846 GCGAACTCACGATCCAGTAGA 59.599 52.381 0.00 0.00 35.09 2.59
5 6 1.828832 GCGAACTCACGATCCAGTAG 58.171 55.000 0.00 0.00 35.09 2.57
6 7 0.098200 CGCGAACTCACGATCCAGTA 59.902 55.000 0.00 0.00 35.09 2.74
7 8 1.154016 CGCGAACTCACGATCCAGT 60.154 57.895 0.00 0.00 35.09 4.00
8 9 1.874019 CCGCGAACTCACGATCCAG 60.874 63.158 8.23 0.00 35.09 3.86
9 10 2.180769 CCGCGAACTCACGATCCA 59.819 61.111 8.23 0.00 35.09 3.41
10 11 2.582498 CCCGCGAACTCACGATCC 60.582 66.667 8.23 0.00 35.09 3.36
11 12 1.872679 GTCCCGCGAACTCACGATC 60.873 63.158 8.23 0.00 35.09 3.69
12 13 2.181021 GTCCCGCGAACTCACGAT 59.819 61.111 8.23 0.00 35.09 3.73
13 14 4.394078 CGTCCCGCGAACTCACGA 62.394 66.667 8.23 0.00 44.77 4.35
14 15 4.695231 ACGTCCCGCGAACTCACG 62.695 66.667 8.23 10.62 44.77 4.35
15 16 2.804090 GACGTCCCGCGAACTCAC 60.804 66.667 8.23 0.00 44.77 3.51
16 17 3.289062 TGACGTCCCGCGAACTCA 61.289 61.111 14.12 8.41 44.77 3.41
17 18 2.804090 GTGACGTCCCGCGAACTC 60.804 66.667 14.12 5.97 44.77 3.01
18 19 4.353437 GGTGACGTCCCGCGAACT 62.353 66.667 14.12 0.00 44.77 3.01
30 31 1.299926 ACACGTTCAGCTCGGTGAC 60.300 57.895 9.25 0.00 0.00 3.67
31 32 1.299850 CACACGTTCAGCTCGGTGA 60.300 57.895 9.25 0.00 34.24 4.02
32 33 2.943345 GCACACGTTCAGCTCGGTG 61.943 63.158 9.18 9.18 34.88 4.94
33 34 2.661866 GCACACGTTCAGCTCGGT 60.662 61.111 0.00 0.00 0.00 4.69
34 35 2.356313 AGCACACGTTCAGCTCGG 60.356 61.111 0.64 0.00 32.05 4.63
35 36 1.215014 TTCAGCACACGTTCAGCTCG 61.215 55.000 3.38 0.00 36.26 5.03
36 37 0.233332 GTTCAGCACACGTTCAGCTC 59.767 55.000 3.38 0.00 36.26 4.09
37 38 1.490693 CGTTCAGCACACGTTCAGCT 61.491 55.000 0.64 0.64 39.63 4.24
38 39 1.083401 CGTTCAGCACACGTTCAGC 60.083 57.895 0.00 0.00 32.80 4.26
58 59 2.505557 CGAACGTACGGCACCTCC 60.506 66.667 21.06 0.00 0.00 4.30
59 60 2.505557 CCGAACGTACGGCACCTC 60.506 66.667 21.06 6.84 46.20 3.85
66 67 1.800315 CCTCAGCACCGAACGTACG 60.800 63.158 15.01 15.01 0.00 3.67
67 68 0.172803 ATCCTCAGCACCGAACGTAC 59.827 55.000 0.00 0.00 0.00 3.67
68 69 0.454600 GATCCTCAGCACCGAACGTA 59.545 55.000 0.00 0.00 0.00 3.57
69 70 1.215647 GATCCTCAGCACCGAACGT 59.784 57.895 0.00 0.00 0.00 3.99
70 71 1.874019 CGATCCTCAGCACCGAACG 60.874 63.158 0.00 0.00 0.00 3.95
71 72 1.519455 CCGATCCTCAGCACCGAAC 60.519 63.158 0.00 0.00 0.00 3.95
72 73 1.945354 GACCGATCCTCAGCACCGAA 61.945 60.000 0.00 0.00 0.00 4.30
73 74 2.362503 ACCGATCCTCAGCACCGA 60.363 61.111 0.00 0.00 0.00 4.69
74 75 2.105128 GACCGATCCTCAGCACCG 59.895 66.667 0.00 0.00 0.00 4.94
75 76 1.739338 ATCGACCGATCCTCAGCACC 61.739 60.000 0.00 0.00 0.00 5.01
76 77 0.318275 GATCGACCGATCCTCAGCAC 60.318 60.000 18.61 0.00 43.71 4.40
77 78 1.786049 CGATCGACCGATCCTCAGCA 61.786 60.000 22.02 0.00 45.95 4.41
78 79 1.081774 CGATCGACCGATCCTCAGC 60.082 63.158 22.02 2.49 45.95 4.26
79 80 0.040870 CACGATCGACCGATCCTCAG 60.041 60.000 24.34 12.94 45.95 3.35
80 81 0.463116 TCACGATCGACCGATCCTCA 60.463 55.000 24.34 7.13 45.95 3.86
81 82 0.661552 TTCACGATCGACCGATCCTC 59.338 55.000 24.34 4.50 45.95 3.71
82 83 0.663688 CTTCACGATCGACCGATCCT 59.336 55.000 24.34 11.28 45.95 3.24
83 84 0.661552 TCTTCACGATCGACCGATCC 59.338 55.000 24.34 8.63 45.95 3.36
84 85 1.744374 GTCTTCACGATCGACCGATC 58.256 55.000 24.34 19.20 45.42 3.69
85 86 3.920144 GTCTTCACGATCGACCGAT 57.080 52.632 24.34 4.42 37.59 4.18
96 97 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
97 98 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
98 99 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
99 100 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
100 101 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
101 102 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
102 103 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
103 104 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
104 105 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
105 106 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
106 107 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
107 108 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
108 109 1.425412 ACAACGCGGTTGATGTAGTC 58.575 50.000 22.26 0.00 45.28 2.59
109 110 1.873698 AACAACGCGGTTGATGTAGT 58.126 45.000 22.26 2.04 45.28 2.73
110 111 5.486706 GTTATAACAACGCGGTTGATGTAG 58.513 41.667 22.26 1.41 45.28 2.74
111 112 4.031539 CGTTATAACAACGCGGTTGATGTA 59.968 41.667 22.26 13.25 45.28 2.29
112 113 3.181528 CGTTATAACAACGCGGTTGATGT 60.182 43.478 22.26 14.02 45.28 3.06
113 114 3.338839 CGTTATAACAACGCGGTTGATG 58.661 45.455 22.26 11.18 45.28 3.07
114 115 3.644805 CGTTATAACAACGCGGTTGAT 57.355 42.857 22.26 15.42 45.28 2.57
139 140 1.354506 CCCTCGTAGACCGTAAGCG 59.645 63.158 0.00 0.00 37.94 4.68
140 141 1.332065 GTACCCTCGTAGACCGTAAGC 59.668 57.143 0.00 0.00 37.94 3.09
141 142 1.594862 CGTACCCTCGTAGACCGTAAG 59.405 57.143 0.00 0.00 37.94 2.34
142 143 1.066430 ACGTACCCTCGTAGACCGTAA 60.066 52.381 0.00 0.00 42.35 3.18
143 144 0.535335 ACGTACCCTCGTAGACCGTA 59.465 55.000 0.00 0.00 42.35 4.02
144 145 0.535335 TACGTACCCTCGTAGACCGT 59.465 55.000 0.00 0.00 43.80 4.83
145 146 3.362581 TACGTACCCTCGTAGACCG 57.637 57.895 0.00 0.00 43.80 4.79
150 151 1.203758 TGTCGTCTACGTACCCTCGTA 59.796 52.381 2.02 0.00 43.80 3.43
151 152 0.037326 TGTCGTCTACGTACCCTCGT 60.037 55.000 2.02 0.00 45.97 4.18
152 153 0.371645 GTGTCGTCTACGTACCCTCG 59.628 60.000 2.02 0.00 40.80 4.63
153 154 1.663135 GAGTGTCGTCTACGTACCCTC 59.337 57.143 2.02 2.92 40.80 4.30
154 155 1.277557 AGAGTGTCGTCTACGTACCCT 59.722 52.381 2.02 0.00 40.80 4.34
155 156 1.663135 GAGAGTGTCGTCTACGTACCC 59.337 57.143 2.02 0.00 40.80 3.69
156 157 1.663135 GGAGAGTGTCGTCTACGTACC 59.337 57.143 2.02 0.00 40.80 3.34
157 158 1.663135 GGGAGAGTGTCGTCTACGTAC 59.337 57.143 2.02 3.87 40.80 3.67
158 159 1.406069 GGGGAGAGTGTCGTCTACGTA 60.406 57.143 2.02 0.00 40.80 3.57
159 160 0.676151 GGGGAGAGTGTCGTCTACGT 60.676 60.000 2.02 0.00 40.80 3.57
160 161 0.392729 AGGGGAGAGTGTCGTCTACG 60.393 60.000 0.00 0.00 41.45 3.51
161 162 1.065272 AGAGGGGAGAGTGTCGTCTAC 60.065 57.143 0.00 0.00 0.00 2.59
162 163 1.209990 GAGAGGGGAGAGTGTCGTCTA 59.790 57.143 0.00 0.00 0.00 2.59
163 164 0.034863 GAGAGGGGAGAGTGTCGTCT 60.035 60.000 0.00 0.00 0.00 4.18
164 165 1.370587 CGAGAGGGGAGAGTGTCGTC 61.371 65.000 0.00 0.00 0.00 4.20
165 166 1.377463 CGAGAGGGGAGAGTGTCGT 60.377 63.158 0.00 0.00 0.00 4.34
166 167 0.961358 AACGAGAGGGGAGAGTGTCG 60.961 60.000 0.00 0.00 35.69 4.35
167 168 0.528470 CAACGAGAGGGGAGAGTGTC 59.472 60.000 0.00 0.00 0.00 3.67
168 169 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
169 170 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
170 171 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
171 172 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
172 173 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
173 174 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
174 175 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
175 176 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
176 177 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
177 178 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
178 179 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
179 180 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
180 181 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
181 182 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
182 183 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
183 184 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
184 185 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
185 186 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
186 187 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
187 188 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
188 189 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
189 190 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
190 191 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
191 192 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
192 193 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
193 194 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
194 195 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
195 196 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
196 197 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
197 198 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
198 199 0.166597 AACGCACACGCAAGATCATG 59.833 50.000 0.00 0.00 45.53 3.07
199 200 0.166597 CAACGCACACGCAAGATCAT 59.833 50.000 0.00 0.00 45.53 2.45
200 201 1.569003 CAACGCACACGCAAGATCA 59.431 52.632 0.00 0.00 45.53 2.92
201 202 1.154413 CCAACGCACACGCAAGATC 60.154 57.895 0.00 0.00 45.53 2.75
202 203 0.955428 ATCCAACGCACACGCAAGAT 60.955 50.000 0.00 0.00 45.53 2.40
203 204 1.163420 AATCCAACGCACACGCAAGA 61.163 50.000 0.00 0.00 45.53 3.02
204 205 0.317770 AAATCCAACGCACACGCAAG 60.318 50.000 0.00 0.00 45.53 4.01
205 206 0.101399 AAAATCCAACGCACACGCAA 59.899 45.000 0.00 0.00 45.53 4.85
206 207 0.101399 AAAAATCCAACGCACACGCA 59.899 45.000 0.00 0.00 45.53 5.24
207 208 2.880091 AAAAATCCAACGCACACGC 58.120 47.368 0.00 0.00 45.53 5.34
224 225 6.323225 TGTTGGGGAACGGAGTAATTTAAAAA 59.677 34.615 0.00 0.00 45.00 1.94
225 226 5.832060 TGTTGGGGAACGGAGTAATTTAAAA 59.168 36.000 0.00 0.00 45.00 1.52
226 227 5.383476 TGTTGGGGAACGGAGTAATTTAAA 58.617 37.500 0.00 0.00 45.00 1.52
227 228 4.983053 TGTTGGGGAACGGAGTAATTTAA 58.017 39.130 0.00 0.00 45.00 1.52
228 229 4.041938 ACTGTTGGGGAACGGAGTAATTTA 59.958 41.667 0.00 0.00 45.00 1.40
229 230 3.181437 ACTGTTGGGGAACGGAGTAATTT 60.181 43.478 0.00 0.00 45.00 1.82
230 231 2.374170 ACTGTTGGGGAACGGAGTAATT 59.626 45.455 0.00 0.00 45.00 1.40
231 232 1.982958 ACTGTTGGGGAACGGAGTAAT 59.017 47.619 0.00 0.00 45.00 1.89
232 233 1.345415 GACTGTTGGGGAACGGAGTAA 59.655 52.381 0.00 0.00 45.00 2.24
233 234 0.971386 GACTGTTGGGGAACGGAGTA 59.029 55.000 0.00 0.00 45.00 2.59
235 236 1.374252 CGACTGTTGGGGAACGGAG 60.374 63.158 0.00 0.00 33.39 4.63
236 237 2.738480 CGACTGTTGGGGAACGGA 59.262 61.111 0.00 0.00 33.39 4.69
237 238 3.047877 GCGACTGTTGGGGAACGG 61.048 66.667 0.00 0.00 35.24 4.44
238 239 2.280524 TGCGACTGTTGGGGAACG 60.281 61.111 0.00 0.00 0.00 3.95
239 240 2.617274 GCTGCGACTGTTGGGGAAC 61.617 63.158 0.00 0.00 0.00 3.62
240 241 2.281484 GCTGCGACTGTTGGGGAA 60.281 61.111 0.00 0.00 0.00 3.97
241 242 4.680237 CGCTGCGACTGTTGGGGA 62.680 66.667 18.66 0.00 0.00 4.81
242 243 4.988598 ACGCTGCGACTGTTGGGG 62.989 66.667 30.47 0.00 0.00 4.96
243 244 3.414700 GACGCTGCGACTGTTGGG 61.415 66.667 30.47 0.00 0.00 4.12
244 245 3.767230 CGACGCTGCGACTGTTGG 61.767 66.667 30.47 5.49 0.00 3.77
245 246 4.415501 GCGACGCTGCGACTGTTG 62.416 66.667 30.47 11.14 0.00 3.33
246 247 4.942481 TGCGACGCTGCGACTGTT 62.942 61.111 30.47 5.22 37.81 3.16
276 277 3.934391 CTTCGACACCGCCCAGGAC 62.934 68.421 0.00 0.00 45.00 3.85
277 278 3.691342 CTTCGACACCGCCCAGGA 61.691 66.667 0.00 0.00 45.00 3.86
279 280 3.530910 AACCTTCGACACCGCCCAG 62.531 63.158 0.00 0.00 35.37 4.45
280 281 3.524648 GAACCTTCGACACCGCCCA 62.525 63.158 0.00 0.00 35.37 5.36
281 282 2.741211 GAACCTTCGACACCGCCC 60.741 66.667 0.00 0.00 35.37 6.13
282 283 2.741211 GGAACCTTCGACACCGCC 60.741 66.667 0.00 0.00 35.37 6.13
283 284 3.110178 CGGAACCTTCGACACCGC 61.110 66.667 0.00 0.00 37.32 5.68
284 285 1.443872 CTCGGAACCTTCGACACCG 60.444 63.158 0.00 0.00 44.09 4.94
285 286 1.080025 CCTCGGAACCTTCGACACC 60.080 63.158 0.00 0.00 32.86 4.16
286 287 1.737008 GCCTCGGAACCTTCGACAC 60.737 63.158 0.00 0.00 32.86 3.67
287 288 2.654877 GCCTCGGAACCTTCGACA 59.345 61.111 0.00 0.00 32.86 4.35
288 289 2.125633 GGCCTCGGAACCTTCGAC 60.126 66.667 0.00 0.00 32.86 4.20
289 290 2.167398 CTTGGCCTCGGAACCTTCGA 62.167 60.000 3.32 0.00 35.24 3.71
290 291 1.741770 CTTGGCCTCGGAACCTTCG 60.742 63.158 3.32 0.00 0.00 3.79
291 292 1.377333 CCTTGGCCTCGGAACCTTC 60.377 63.158 3.32 0.00 0.00 3.46
292 293 2.757077 CCTTGGCCTCGGAACCTT 59.243 61.111 3.32 0.00 0.00 3.50
293 294 4.035102 GCCTTGGCCTCGGAACCT 62.035 66.667 14.16 0.00 0.00 3.50
319 320 4.891727 CTCGATCCGGTTGGGCGG 62.892 72.222 0.00 0.00 35.22 6.13
320 321 4.891727 CCTCGATCCGGTTGGGCG 62.892 72.222 0.00 0.00 35.62 6.13
322 323 4.891727 CGCCTCGATCCGGTTGGG 62.892 72.222 0.00 0.00 35.24 4.12
323 324 4.891727 CCGCCTCGATCCGGTTGG 62.892 72.222 13.86 0.00 39.67 3.77
324 325 3.774959 CTCCGCCTCGATCCGGTTG 62.775 68.421 19.33 12.03 44.63 3.77
325 326 2.898920 TACTCCGCCTCGATCCGGTT 62.899 60.000 19.33 12.32 44.63 4.44
326 327 3.411114 TACTCCGCCTCGATCCGGT 62.411 63.158 19.33 7.68 44.63 5.28
327 328 2.593725 TACTCCGCCTCGATCCGG 60.594 66.667 15.44 15.44 45.64 5.14
328 329 2.618219 CCTACTCCGCCTCGATCCG 61.618 68.421 0.00 0.00 0.00 4.18
329 330 1.528776 ACCTACTCCGCCTCGATCC 60.529 63.158 0.00 0.00 0.00 3.36
330 331 1.655329 CACCTACTCCGCCTCGATC 59.345 63.158 0.00 0.00 0.00 3.69
331 332 2.491022 GCACCTACTCCGCCTCGAT 61.491 63.158 0.00 0.00 0.00 3.59
332 333 3.138798 GCACCTACTCCGCCTCGA 61.139 66.667 0.00 0.00 0.00 4.04
333 334 4.208686 GGCACCTACTCCGCCTCG 62.209 72.222 0.00 0.00 42.78 4.63
334 335 4.208686 CGGCACCTACTCCGCCTC 62.209 72.222 0.00 0.00 43.95 4.70
337 338 4.509737 GTCCGGCACCTACTCCGC 62.510 72.222 0.00 0.00 44.01 5.54
338 339 4.189188 CGTCCGGCACCTACTCCG 62.189 72.222 0.00 0.00 44.89 4.63
339 340 3.834799 CCGTCCGGCACCTACTCC 61.835 72.222 0.00 0.00 0.00 3.85
340 341 2.753043 TCCGTCCGGCACCTACTC 60.753 66.667 0.00 0.00 34.68 2.59
341 342 3.066814 GTCCGTCCGGCACCTACT 61.067 66.667 0.00 0.00 34.68 2.57
342 343 4.487412 CGTCCGTCCGGCACCTAC 62.487 72.222 0.00 0.00 34.68 3.18
370 371 3.366739 GAGGTTCCGGCTACCGTGG 62.367 68.421 16.83 0.00 46.80 4.94
371 372 2.183555 GAGGTTCCGGCTACCGTG 59.816 66.667 16.83 0.00 46.80 4.94
372 373 3.073101 GGAGGTTCCGGCTACCGT 61.073 66.667 16.83 8.08 46.80 4.83
374 375 3.477346 GGGGAGGTTCCGGCTACC 61.477 72.222 15.55 15.55 37.43 3.18
375 376 3.846430 CGGGGAGGTTCCGGCTAC 61.846 72.222 0.00 0.00 43.45 3.58
417 418 4.634133 TCGCCGACACGACACCAC 62.634 66.667 0.00 0.00 37.09 4.16
424 425 4.813526 CTCCTCGTCGCCGACACG 62.814 72.222 18.40 4.91 38.40 4.49
425 426 3.384014 CTCTCCTCGTCGCCGACAC 62.384 68.421 18.40 0.00 38.40 3.67
426 427 3.125573 CTCTCCTCGTCGCCGACA 61.126 66.667 18.40 3.72 38.40 4.35
427 428 1.919956 TTTCTCTCCTCGTCGCCGAC 61.920 60.000 7.29 7.29 38.40 4.79
428 429 1.645704 CTTTCTCTCCTCGTCGCCGA 61.646 60.000 0.00 0.00 41.73 5.54
429 430 1.226435 CTTTCTCTCCTCGTCGCCG 60.226 63.158 0.00 0.00 0.00 6.46
430 431 1.517475 GCTTTCTCTCCTCGTCGCC 60.517 63.158 0.00 0.00 0.00 5.54
431 432 1.870016 CGCTTTCTCTCCTCGTCGC 60.870 63.158 0.00 0.00 0.00 5.19
432 433 1.870016 GCGCTTTCTCTCCTCGTCG 60.870 63.158 0.00 0.00 0.00 5.12
433 434 0.733729 TAGCGCTTTCTCTCCTCGTC 59.266 55.000 18.68 0.00 0.00 4.20
434 435 0.736053 CTAGCGCTTTCTCTCCTCGT 59.264 55.000 18.68 0.00 0.00 4.18
435 436 1.018148 TCTAGCGCTTTCTCTCCTCG 58.982 55.000 18.68 0.00 0.00 4.63
436 437 1.268335 CGTCTAGCGCTTTCTCTCCTC 60.268 57.143 18.68 0.00 0.00 3.71
437 438 0.736053 CGTCTAGCGCTTTCTCTCCT 59.264 55.000 18.68 0.00 0.00 3.69
438 439 0.248702 CCGTCTAGCGCTTTCTCTCC 60.249 60.000 18.68 0.00 39.71 3.71
439 440 0.733729 TCCGTCTAGCGCTTTCTCTC 59.266 55.000 18.68 0.00 39.71 3.20
440 441 0.736053 CTCCGTCTAGCGCTTTCTCT 59.264 55.000 18.68 0.00 39.71 3.10
441 442 0.868177 GCTCCGTCTAGCGCTTTCTC 60.868 60.000 18.68 3.20 39.71 2.87
442 443 1.139947 GCTCCGTCTAGCGCTTTCT 59.860 57.895 18.68 0.00 39.71 2.52
443 444 3.694527 GCTCCGTCTAGCGCTTTC 58.305 61.111 18.68 5.61 39.71 2.62
449 450 0.531090 TCTCTCTCGCTCCGTCTAGC 60.531 60.000 0.00 0.00 39.21 3.42
450 451 1.497991 CTCTCTCTCGCTCCGTCTAG 58.502 60.000 0.00 0.00 0.00 2.43
451 452 0.531090 GCTCTCTCTCGCTCCGTCTA 60.531 60.000 0.00 0.00 0.00 2.59
452 453 1.817941 GCTCTCTCTCGCTCCGTCT 60.818 63.158 0.00 0.00 0.00 4.18
453 454 2.713154 GCTCTCTCTCGCTCCGTC 59.287 66.667 0.00 0.00 0.00 4.79
454 455 3.199190 CGCTCTCTCTCGCTCCGT 61.199 66.667 0.00 0.00 0.00 4.69
455 456 3.947841 CCGCTCTCTCTCGCTCCG 61.948 72.222 0.00 0.00 0.00 4.63
456 457 4.264638 GCCGCTCTCTCTCGCTCC 62.265 72.222 0.00 0.00 0.00 4.70
457 458 3.468266 CTGCCGCTCTCTCTCGCTC 62.468 68.421 0.00 0.00 0.00 5.03
458 459 3.517140 CTGCCGCTCTCTCTCGCT 61.517 66.667 0.00 0.00 0.00 4.93
459 460 3.468266 CTCTGCCGCTCTCTCTCGC 62.468 68.421 0.00 0.00 0.00 5.03
460 461 2.715005 CTCTGCCGCTCTCTCTCG 59.285 66.667 0.00 0.00 0.00 4.04
461 462 2.489275 CCCTCTGCCGCTCTCTCTC 61.489 68.421 0.00 0.00 0.00 3.20
462 463 2.441901 CCCTCTGCCGCTCTCTCT 60.442 66.667 0.00 0.00 0.00 3.10
463 464 4.219999 GCCCTCTGCCGCTCTCTC 62.220 72.222 0.00 0.00 0.00 3.20
473 474 1.027357 ATAAATTGCAGCGCCCTCTG 58.973 50.000 2.29 0.00 37.15 3.35
474 475 1.406539 CAATAAATTGCAGCGCCCTCT 59.593 47.619 2.29 0.00 0.00 3.69
475 476 1.536709 CCAATAAATTGCAGCGCCCTC 60.537 52.381 2.29 0.00 36.48 4.30
476 477 0.461135 CCAATAAATTGCAGCGCCCT 59.539 50.000 2.29 0.00 36.48 5.19
477 478 1.153597 GCCAATAAATTGCAGCGCCC 61.154 55.000 2.29 0.00 36.48 6.13
478 479 1.481819 CGCCAATAAATTGCAGCGCC 61.482 55.000 2.29 0.00 39.91 6.53
479 480 1.919340 CGCCAATAAATTGCAGCGC 59.081 52.632 0.00 0.00 39.91 5.92
480 481 1.800332 CGCGCCAATAAATTGCAGCG 61.800 55.000 20.14 20.14 46.49 5.18
481 482 1.919340 CGCGCCAATAAATTGCAGC 59.081 52.632 0.00 9.25 36.48 5.25
482 483 1.481819 GGCGCGCCAATAAATTGCAG 61.482 55.000 43.55 0.00 36.48 4.41
483 484 1.518133 GGCGCGCCAATAAATTGCA 60.518 52.632 43.55 0.00 36.48 4.08
484 485 3.308660 GGCGCGCCAATAAATTGC 58.691 55.556 43.55 13.42 36.48 3.56
493 494 3.202001 GCTAGATTTGGCGCGCCA 61.202 61.111 46.88 46.88 45.63 5.69
499 500 3.215606 CTCGCGCGCTAGATTTGGC 62.216 63.158 30.48 0.00 0.00 4.52
500 501 2.923854 CTCGCGCGCTAGATTTGG 59.076 61.111 30.48 11.00 0.00 3.28
501 502 2.233654 AGCTCGCGCGCTAGATTTG 61.234 57.895 33.61 14.98 42.32 2.32
502 503 2.105128 AGCTCGCGCGCTAGATTT 59.895 55.556 33.61 16.33 42.32 2.17
503 504 2.656651 CAGCTCGCGCGCTAGATT 60.657 61.111 33.61 18.74 42.32 2.40
514 515 2.176792 GAAAAAGGCGGCAGCTCG 59.823 61.111 13.08 0.00 44.37 5.03
515 516 2.568612 GGAAAAAGGCGGCAGCTC 59.431 61.111 13.08 1.57 44.37 4.09
516 517 3.365265 CGGAAAAAGGCGGCAGCT 61.365 61.111 13.08 0.00 44.37 4.24
537 538 3.497031 GTGGCGGGAAACTAGCGC 61.497 66.667 0.00 0.00 37.73 5.92
538 539 2.818274 GGTGGCGGGAAACTAGCG 60.818 66.667 0.00 0.00 35.39 4.26
539 540 2.818274 CGGTGGCGGGAAACTAGC 60.818 66.667 0.00 0.00 0.00 3.42
540 541 2.818274 GCGGTGGCGGGAAACTAG 60.818 66.667 0.00 0.00 0.00 2.57
541 542 3.315949 AGCGGTGGCGGGAAACTA 61.316 61.111 0.00 0.00 46.35 2.24
557 558 4.776953 CGTTTTCGCGCGCTCCAG 62.777 66.667 30.48 13.90 36.22 3.86
585 586 1.202256 GCGGTAAACTGGGCATTTAGC 60.202 52.381 7.06 7.06 44.65 3.09
586 587 1.063469 CGCGGTAAACTGGGCATTTAG 59.937 52.381 0.00 0.00 0.00 1.85
587 588 1.088306 CGCGGTAAACTGGGCATTTA 58.912 50.000 0.00 0.00 0.00 1.40
588 589 0.606944 TCGCGGTAAACTGGGCATTT 60.607 50.000 6.13 0.00 35.41 2.32
589 590 1.003112 TCGCGGTAAACTGGGCATT 60.003 52.632 6.13 0.00 35.41 3.56
590 591 1.449601 CTCGCGGTAAACTGGGCAT 60.450 57.895 6.13 0.00 35.41 4.40
591 592 2.047655 CTCGCGGTAAACTGGGCA 60.048 61.111 6.13 0.00 35.41 5.36
592 593 2.818274 CCTCGCGGTAAACTGGGC 60.818 66.667 6.13 0.00 35.41 5.36
593 594 2.818274 GCCTCGCGGTAAACTGGG 60.818 66.667 6.13 0.00 36.61 4.45
612 613 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
623 624 9.726438 ATAGTAAATATGTGGGTTAAGAGCATC 57.274 33.333 0.00 0.00 0.00 3.91
643 644 9.607333 ATGACCCTTCTTCTCATGATATAGTAA 57.393 33.333 0.00 0.00 0.00 2.24
645 646 8.503428 AATGACCCTTCTTCTCATGATATAGT 57.497 34.615 0.00 0.00 0.00 2.12
646 647 9.217278 CAAATGACCCTTCTTCTCATGATATAG 57.783 37.037 0.00 0.00 0.00 1.31
647 648 8.937835 TCAAATGACCCTTCTTCTCATGATATA 58.062 33.333 0.00 0.00 0.00 0.86
648 649 7.809238 TCAAATGACCCTTCTTCTCATGATAT 58.191 34.615 0.00 0.00 0.00 1.63
649 650 7.199167 TCAAATGACCCTTCTTCTCATGATA 57.801 36.000 0.00 0.00 0.00 2.15
650 651 6.070951 TCAAATGACCCTTCTTCTCATGAT 57.929 37.500 0.00 0.00 0.00 2.45
652 653 6.183360 GGATTCAAATGACCCTTCTTCTCATG 60.183 42.308 0.00 0.00 0.00 3.07
653 654 5.890419 GGATTCAAATGACCCTTCTTCTCAT 59.110 40.000 0.00 0.00 0.00 2.90
654 655 5.014544 AGGATTCAAATGACCCTTCTTCTCA 59.985 40.000 0.00 0.00 0.00 3.27
655 656 5.504853 AGGATTCAAATGACCCTTCTTCTC 58.495 41.667 0.00 0.00 0.00 2.87
664 665 4.770010 TGGTTTGGTAGGATTCAAATGACC 59.230 41.667 0.00 0.00 35.66 4.02
869 895 4.885325 TGTATGTGCAAGATACTCCGTAGA 59.115 41.667 14.96 0.00 43.00 2.59
873 899 2.789339 CGTGTATGTGCAAGATACTCCG 59.211 50.000 14.96 13.13 43.00 4.63
874 900 2.540101 GCGTGTATGTGCAAGATACTCC 59.460 50.000 14.96 7.52 43.00 3.85
875 901 3.000322 GTGCGTGTATGTGCAAGATACTC 60.000 47.826 14.96 11.54 43.00 2.59
876 902 2.930040 GTGCGTGTATGTGCAAGATACT 59.070 45.455 14.96 0.00 43.00 2.12
877 903 2.930040 AGTGCGTGTATGTGCAAGATAC 59.070 45.455 9.32 9.32 42.90 2.24
878 904 2.929398 CAGTGCGTGTATGTGCAAGATA 59.071 45.455 0.00 0.00 43.75 1.98
879 905 1.733912 CAGTGCGTGTATGTGCAAGAT 59.266 47.619 0.00 0.00 43.75 2.40
962 988 3.187227 CGAGGTTGTCAAGTGATTTGAGG 59.813 47.826 0.00 0.00 46.09 3.86
964 990 4.066646 TCGAGGTTGTCAAGTGATTTGA 57.933 40.909 0.00 0.00 43.40 2.69
965 991 4.434725 CGATCGAGGTTGTCAAGTGATTTG 60.435 45.833 10.26 0.00 38.17 2.32
966 992 3.679980 CGATCGAGGTTGTCAAGTGATTT 59.320 43.478 10.26 0.00 0.00 2.17
967 993 3.254060 CGATCGAGGTTGTCAAGTGATT 58.746 45.455 10.26 0.00 0.00 2.57
1008 1059 4.157120 GTCGCGGCAGGGTGGTAT 62.157 66.667 5.47 0.00 0.00 2.73
1044 1095 2.032620 GCCAGGAGGAATAACGAGAGA 58.967 52.381 0.00 0.00 36.89 3.10
1051 1102 1.692749 AGCGGGCCAGGAGGAATAA 60.693 57.895 4.39 0.00 36.89 1.40
1053 1104 3.483869 GAGCGGGCCAGGAGGAAT 61.484 66.667 4.39 0.00 36.89 3.01
1994 2203 6.238925 GCCAAAAAGCAGAGTAAAGGTAAAGA 60.239 38.462 0.00 0.00 0.00 2.52
2000 2209 4.550422 GAAGCCAAAAAGCAGAGTAAAGG 58.450 43.478 0.00 0.00 34.23 3.11
2012 2221 5.106908 CCAAACTTTCAAACGAAGCCAAAAA 60.107 36.000 0.00 0.00 0.00 1.94
2050 2416 3.439129 GGTGCATTTCAACCCAGTACTAC 59.561 47.826 0.00 0.00 0.00 2.73
2117 3309 2.418368 AGTGTGGTCAAGCTCACAAA 57.582 45.000 7.48 0.00 44.19 2.83
2188 3416 1.499056 CACAGCTGCATGGTCGAAC 59.501 57.895 15.27 0.00 0.00 3.95
2296 3630 1.163554 GGTAGAACGTCGACAGGTCT 58.836 55.000 24.14 24.14 0.00 3.85
2464 3798 1.675641 GTTGCTCTGTCCGGCCATT 60.676 57.895 2.24 0.00 0.00 3.16
2473 3807 1.591594 CGTGACGGTGTTGCTCTGT 60.592 57.895 0.00 0.00 0.00 3.41
2916 4250 3.752747 TGATGTTGTAATGTCTGGTGCAG 59.247 43.478 0.00 0.00 0.00 4.41
3233 4963 6.808704 GCACAATTTTAGTTGATTTCTCCCTC 59.191 38.462 0.00 0.00 33.37 4.30
3245 4975 8.603181 GTCATTGAAACTTGCACAATTTTAGTT 58.397 29.630 0.00 0.00 32.92 2.24
3363 5095 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3364 5096 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3365 5097 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3366 5098 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3367 5099 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3368 5100 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3369 5101 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3370 5102 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3371 5103 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3372 5104 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3373 5105 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3374 5106 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3375 5107 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3376 5108 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3377 5109 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3378 5110 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3379 5111 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3380 5112 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3381 5113 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3382 5114 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3383 5115 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3384 5116 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3385 5117 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3386 5118 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3387 5119 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3388 5120 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3389 5121 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3390 5122 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3391 5123 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3392 5124 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3393 5125 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3394 5126 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3395 5127 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3396 5128 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3397 5129 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3398 5130 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3399 5131 1.737236 GATGTGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
3400 5132 1.063912 GGATGTGTGTGTGTGTGTGTG 59.936 52.381 0.00 0.00 0.00 3.82
3401 5133 1.339535 TGGATGTGTGTGTGTGTGTGT 60.340 47.619 0.00 0.00 0.00 3.72
3402 5134 1.377536 TGGATGTGTGTGTGTGTGTG 58.622 50.000 0.00 0.00 0.00 3.82
3403 5135 2.121291 TTGGATGTGTGTGTGTGTGT 57.879 45.000 0.00 0.00 0.00 3.72
3404 5136 3.437428 CTTTTGGATGTGTGTGTGTGTG 58.563 45.455 0.00 0.00 0.00 3.82
3405 5137 2.159254 GCTTTTGGATGTGTGTGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
3406 5138 2.462889 GCTTTTGGATGTGTGTGTGTG 58.537 47.619 0.00 0.00 0.00 3.82
3407 5139 1.408702 GGCTTTTGGATGTGTGTGTGT 59.591 47.619 0.00 0.00 0.00 3.72
3408 5140 1.269726 GGGCTTTTGGATGTGTGTGTG 60.270 52.381 0.00 0.00 0.00 3.82
3522 5270 7.606456 ACGATGTTTAGGTTGAGTATTGTCATT 59.394 33.333 0.00 0.00 0.00 2.57
3523 5271 7.103641 ACGATGTTTAGGTTGAGTATTGTCAT 58.896 34.615 0.00 0.00 0.00 3.06
3556 5304 2.964464 TGACTGGTTTTGACAATGCCAT 59.036 40.909 10.47 3.71 0.00 4.40
3563 5311 2.217750 CATCCGTGACTGGTTTTGACA 58.782 47.619 0.00 0.00 0.00 3.58
3617 5365 5.784750 TGAGTCGTCAATTGATCAATGAC 57.215 39.130 21.39 23.96 0.00 3.06
3633 5381 4.611310 ATCAATCTGCAACAATGAGTCG 57.389 40.909 0.00 0.00 0.00 4.18
3664 5412 0.036294 GGCTGTTAGTGGAGTGGGTC 60.036 60.000 0.00 0.00 0.00 4.46
3760 5508 6.863275 TCACGATCAACATAAGTACATCACT 58.137 36.000 0.00 0.00 40.05 3.41
3763 5511 6.752351 ACACTCACGATCAACATAAGTACATC 59.248 38.462 0.00 0.00 0.00 3.06
3781 5531 3.476552 TCCATGGAAGAACAACACTCAC 58.523 45.455 13.46 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.