Multiple sequence alignment - TraesCS1D01G263800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G263800 chr1D 100.000 3481 0 0 1 3481 359667117 359663637 0.000000e+00 6429.0
1 TraesCS1D01G263800 chr1D 94.324 370 21 0 3 372 359676338 359675969 5.040000e-158 568.0
2 TraesCS1D01G263800 chr1D 94.309 369 21 0 1 369 474829524 474829892 1.810000e-157 566.0
3 TraesCS1D01G263800 chr1D 94.038 369 22 0 1 369 42924491 42924859 8.440000e-156 560.0
4 TraesCS1D01G263800 chr1D 93.750 368 23 0 2 369 42973063 42973430 1.410000e-153 553.0
5 TraesCS1D01G263800 chr1B 93.797 3031 119 29 506 3481 481542912 481539896 0.000000e+00 4492.0
6 TraesCS1D01G263800 chr1B 85.621 153 9 2 387 526 481543090 481542938 7.780000e-32 148.0
7 TraesCS1D01G263800 chr1A 93.661 978 29 11 917 1878 459188529 459187569 0.000000e+00 1432.0
8 TraesCS1D01G263800 chr1A 91.561 948 40 6 1961 2892 459187535 459186612 0.000000e+00 1271.0
9 TraesCS1D01G263800 chr1A 94.444 396 21 1 520 914 459188964 459188569 2.970000e-170 608.0
10 TraesCS1D01G263800 chr1A 87.708 480 45 6 2966 3440 459183850 459183380 6.570000e-152 547.0
11 TraesCS1D01G263800 chr1A 84.810 158 8 7 387 528 459189143 459188986 1.010000e-30 145.0
12 TraesCS1D01G263800 chr3D 93.767 369 22 1 1 369 538409565 538409932 1.410000e-153 553.0
13 TraesCS1D01G263800 chr3D 85.393 534 63 12 1042 1569 515776438 515776962 1.100000e-149 540.0
14 TraesCS1D01G263800 chr3D 83.624 287 26 12 2202 2479 515777675 515777949 2.070000e-62 250.0
15 TraesCS1D01G263800 chr3A 93.298 373 25 0 1 373 719960507 719960879 5.080000e-153 551.0
16 TraesCS1D01G263800 chr3A 85.688 538 54 17 1042 1574 650056186 650056705 2.360000e-151 545.0
17 TraesCS1D01G263800 chr3A 82.192 292 30 13 2197 2479 650057432 650057710 7.510000e-57 231.0
18 TraesCS1D01G263800 chr6A 93.496 369 24 0 1 369 457320161 457320529 1.830000e-152 549.0
19 TraesCS1D01G263800 chr6A 81.659 229 38 3 1314 1539 30191037 30190810 1.650000e-43 187.0
20 TraesCS1D01G263800 chr6A 83.069 189 22 8 1010 1194 30191244 30191062 2.780000e-36 163.0
21 TraesCS1D01G263800 chr5D 93.496 369 24 0 1 369 26533923 26534291 1.830000e-152 549.0
22 TraesCS1D01G263800 chr2A 93.496 369 24 0 1 369 25336968 25337336 1.830000e-152 549.0
23 TraesCS1D01G263800 chr3B 84.601 539 68 14 1043 1573 678548296 678548827 3.980000e-144 521.0
24 TraesCS1D01G263800 chr3B 77.848 474 51 34 2045 2479 678549356 678549814 9.650000e-61 244.0
25 TraesCS1D01G263800 chr4A 93.191 235 14 2 1312 1545 521919706 521919473 9.250000e-91 344.0
26 TraesCS1D01G263800 chr4A 95.238 42 2 0 2045 2086 174156348 174156307 2.240000e-07 67.6
27 TraesCS1D01G263800 chr4D 91.915 235 17 2 1312 1545 69679958 69679725 9.320000e-86 327.0
28 TraesCS1D01G263800 chr4D 95.238 42 2 0 2045 2086 304691317 304691358 2.240000e-07 67.6
29 TraesCS1D01G263800 chr4B 91.915 235 17 2 1312 1545 103056204 103055971 9.320000e-86 327.0
30 TraesCS1D01G263800 chr4B 95.238 42 2 0 2045 2086 380654587 380654628 2.240000e-07 67.6
31 TraesCS1D01G263800 chr2B 74.950 499 87 28 1054 1531 85177910 85177429 9.860000e-46 195.0
32 TraesCS1D01G263800 chr6B 84.211 190 21 8 1007 1194 51580426 51580244 3.570000e-40 176.0
33 TraesCS1D01G263800 chr6D 83.957 187 21 8 1010 1194 27820312 27820133 1.660000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G263800 chr1D 359663637 359667117 3480 True 6429.0 6429 100.0000 1 3481 1 chr1D.!!$R1 3480
1 TraesCS1D01G263800 chr1B 481539896 481543090 3194 True 2320.0 4492 89.7090 387 3481 2 chr1B.!!$R1 3094
2 TraesCS1D01G263800 chr1A 459183380 459189143 5763 True 800.6 1432 90.4368 387 3440 5 chr1A.!!$R1 3053
3 TraesCS1D01G263800 chr3D 515776438 515777949 1511 False 395.0 540 84.5085 1042 2479 2 chr3D.!!$F2 1437
4 TraesCS1D01G263800 chr3A 650056186 650057710 1524 False 388.0 545 83.9400 1042 2479 2 chr3A.!!$F2 1437
5 TraesCS1D01G263800 chr3B 678548296 678549814 1518 False 382.5 521 81.2245 1043 2479 2 chr3B.!!$F1 1436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 422 0.031585 CCGAAGAGACGACCACACAA 59.968 55.0 0.00 0.0 35.09 3.33 F
904 973 0.970937 AGAAGCCCTTCGATCGTCCA 60.971 55.0 15.94 0.0 43.97 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1298 1434 0.322277 ACTCCTTCTCGCCGTACAGA 60.322 55.000 0.0 0.0 0.0 3.41 R
2601 3124 1.448013 GTCCGTAGCTCCTTGTGCC 60.448 63.158 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.494515 GGTTTTTGGGGAGCGTCT 57.505 55.556 0.00 0.00 0.00 4.18
18 19 2.254471 GGTTTTTGGGGAGCGTCTC 58.746 57.895 0.00 0.00 0.00 3.36
19 20 1.574702 GGTTTTTGGGGAGCGTCTCG 61.575 60.000 1.64 0.00 0.00 4.04
20 21 0.601841 GTTTTTGGGGAGCGTCTCGA 60.602 55.000 0.00 0.00 0.00 4.04
21 22 0.601841 TTTTTGGGGAGCGTCTCGAC 60.602 55.000 0.00 0.00 0.00 4.20
31 32 2.574736 GTCTCGACGCGACTGCTC 60.575 66.667 15.93 0.00 39.65 4.26
32 33 3.800863 TCTCGACGCGACTGCTCC 61.801 66.667 15.93 0.00 39.65 4.70
33 34 4.838486 CTCGACGCGACTGCTCCC 62.838 72.222 15.93 0.00 39.65 4.30
36 37 4.194720 GACGCGACTGCTCCCGAT 62.195 66.667 15.93 0.00 39.65 4.18
37 38 4.194720 ACGCGACTGCTCCCGATC 62.195 66.667 15.93 0.00 39.65 3.69
38 39 4.933064 CGCGACTGCTCCCGATCC 62.933 72.222 0.00 0.00 39.65 3.36
39 40 4.933064 GCGACTGCTCCCGATCCG 62.933 72.222 0.00 0.00 38.39 4.18
40 41 3.518998 CGACTGCTCCCGATCCGT 61.519 66.667 0.00 0.00 0.00 4.69
41 42 2.413765 GACTGCTCCCGATCCGTC 59.586 66.667 0.00 0.00 0.00 4.79
42 43 3.140225 GACTGCTCCCGATCCGTCC 62.140 68.421 0.00 0.00 0.00 4.79
43 44 3.917760 CTGCTCCCGATCCGTCCC 61.918 72.222 0.00 0.00 0.00 4.46
46 47 2.762459 CTCCCGATCCGTCCCCAA 60.762 66.667 0.00 0.00 0.00 4.12
47 48 3.078836 TCCCGATCCGTCCCCAAC 61.079 66.667 0.00 0.00 0.00 3.77
48 49 3.081409 CCCGATCCGTCCCCAACT 61.081 66.667 0.00 0.00 0.00 3.16
49 50 2.666098 CCCGATCCGTCCCCAACTT 61.666 63.158 0.00 0.00 0.00 2.66
50 51 1.298667 CCGATCCGTCCCCAACTTT 59.701 57.895 0.00 0.00 0.00 2.66
51 52 1.024579 CCGATCCGTCCCCAACTTTG 61.025 60.000 0.00 0.00 0.00 2.77
52 53 0.321298 CGATCCGTCCCCAACTTTGT 60.321 55.000 0.00 0.00 0.00 2.83
53 54 1.450025 GATCCGTCCCCAACTTTGTC 58.550 55.000 0.00 0.00 0.00 3.18
54 55 0.037734 ATCCGTCCCCAACTTTGTCC 59.962 55.000 0.00 0.00 0.00 4.02
55 56 1.964373 CCGTCCCCAACTTTGTCCG 60.964 63.158 0.00 0.00 0.00 4.79
56 57 2.613506 CGTCCCCAACTTTGTCCGC 61.614 63.158 0.00 0.00 0.00 5.54
57 58 2.114411 TCCCCAACTTTGTCCGCC 59.886 61.111 0.00 0.00 0.00 6.13
58 59 2.115266 CCCCAACTTTGTCCGCCT 59.885 61.111 0.00 0.00 0.00 5.52
59 60 1.971695 CCCCAACTTTGTCCGCCTC 60.972 63.158 0.00 0.00 0.00 4.70
60 61 1.073199 CCCAACTTTGTCCGCCTCT 59.927 57.895 0.00 0.00 0.00 3.69
61 62 0.323629 CCCAACTTTGTCCGCCTCTA 59.676 55.000 0.00 0.00 0.00 2.43
62 63 1.439679 CCAACTTTGTCCGCCTCTAC 58.560 55.000 0.00 0.00 0.00 2.59
63 64 1.002087 CCAACTTTGTCCGCCTCTACT 59.998 52.381 0.00 0.00 0.00 2.57
64 65 2.550208 CCAACTTTGTCCGCCTCTACTT 60.550 50.000 0.00 0.00 0.00 2.24
65 66 2.737252 CAACTTTGTCCGCCTCTACTTC 59.263 50.000 0.00 0.00 0.00 3.01
66 67 1.275573 ACTTTGTCCGCCTCTACTTCC 59.724 52.381 0.00 0.00 0.00 3.46
67 68 1.275291 CTTTGTCCGCCTCTACTTCCA 59.725 52.381 0.00 0.00 0.00 3.53
68 69 0.606604 TTGTCCGCCTCTACTTCCAC 59.393 55.000 0.00 0.00 0.00 4.02
69 70 0.251653 TGTCCGCCTCTACTTCCACT 60.252 55.000 0.00 0.00 0.00 4.00
70 71 1.005097 TGTCCGCCTCTACTTCCACTA 59.995 52.381 0.00 0.00 0.00 2.74
71 72 1.404748 GTCCGCCTCTACTTCCACTAC 59.595 57.143 0.00 0.00 0.00 2.73
72 73 1.284198 TCCGCCTCTACTTCCACTACT 59.716 52.381 0.00 0.00 0.00 2.57
73 74 2.100989 CCGCCTCTACTTCCACTACTT 58.899 52.381 0.00 0.00 0.00 2.24
74 75 2.099427 CCGCCTCTACTTCCACTACTTC 59.901 54.545 0.00 0.00 0.00 3.01
75 76 2.099427 CGCCTCTACTTCCACTACTTCC 59.901 54.545 0.00 0.00 0.00 3.46
76 77 2.431419 GCCTCTACTTCCACTACTTCCC 59.569 54.545 0.00 0.00 0.00 3.97
77 78 3.032459 CCTCTACTTCCACTACTTCCCC 58.968 54.545 0.00 0.00 0.00 4.81
78 79 3.309994 CCTCTACTTCCACTACTTCCCCT 60.310 52.174 0.00 0.00 0.00 4.79
79 80 3.702045 CTCTACTTCCACTACTTCCCCTG 59.298 52.174 0.00 0.00 0.00 4.45
80 81 0.984995 ACTTCCACTACTTCCCCTGC 59.015 55.000 0.00 0.00 0.00 4.85
81 82 0.984230 CTTCCACTACTTCCCCTGCA 59.016 55.000 0.00 0.00 0.00 4.41
82 83 1.561542 CTTCCACTACTTCCCCTGCAT 59.438 52.381 0.00 0.00 0.00 3.96
83 84 1.204146 TCCACTACTTCCCCTGCATC 58.796 55.000 0.00 0.00 0.00 3.91
84 85 0.179073 CCACTACTTCCCCTGCATCG 60.179 60.000 0.00 0.00 0.00 3.84
85 86 0.824109 CACTACTTCCCCTGCATCGA 59.176 55.000 0.00 0.00 0.00 3.59
86 87 0.824759 ACTACTTCCCCTGCATCGAC 59.175 55.000 0.00 0.00 0.00 4.20
87 88 0.105039 CTACTTCCCCTGCATCGACC 59.895 60.000 0.00 0.00 0.00 4.79
88 89 1.335132 TACTTCCCCTGCATCGACCC 61.335 60.000 0.00 0.00 0.00 4.46
89 90 3.406595 CTTCCCCTGCATCGACCCC 62.407 68.421 0.00 0.00 0.00 4.95
90 91 4.731853 TCCCCTGCATCGACCCCA 62.732 66.667 0.00 0.00 0.00 4.96
91 92 3.492353 CCCCTGCATCGACCCCAT 61.492 66.667 0.00 0.00 0.00 4.00
92 93 2.203252 CCCTGCATCGACCCCATG 60.203 66.667 0.00 0.00 0.00 3.66
93 94 2.203252 CCTGCATCGACCCCATGG 60.203 66.667 4.14 4.14 37.80 3.66
94 95 2.903855 CTGCATCGACCCCATGGC 60.904 66.667 6.09 0.00 33.59 4.40
95 96 3.410628 TGCATCGACCCCATGGCT 61.411 61.111 6.09 0.00 33.59 4.75
96 97 2.903855 GCATCGACCCCATGGCTG 60.904 66.667 6.09 1.56 33.59 4.85
97 98 2.910360 CATCGACCCCATGGCTGA 59.090 61.111 6.09 0.75 33.59 4.26
98 99 1.524621 CATCGACCCCATGGCTGAC 60.525 63.158 6.09 0.00 33.59 3.51
99 100 3.094062 ATCGACCCCATGGCTGACG 62.094 63.158 6.09 11.76 33.59 4.35
100 101 3.770040 CGACCCCATGGCTGACGA 61.770 66.667 6.09 0.00 33.59 4.20
101 102 2.125106 GACCCCATGGCTGACGAC 60.125 66.667 6.09 0.00 33.59 4.34
102 103 4.082523 ACCCCATGGCTGACGACG 62.083 66.667 6.09 0.00 33.59 5.12
119 120 3.804193 GCCGCCGCCAAGAAGAAG 61.804 66.667 0.00 0.00 0.00 2.85
120 121 3.127533 CCGCCGCCAAGAAGAAGG 61.128 66.667 0.00 0.00 0.00 3.46
125 126 3.686760 GCCAAGAAGAAGGCCACC 58.313 61.111 5.01 0.00 45.18 4.61
126 127 2.335712 GCCAAGAAGAAGGCCACCG 61.336 63.158 5.01 0.00 45.18 4.94
127 128 1.374947 CCAAGAAGAAGGCCACCGA 59.625 57.895 5.01 0.00 0.00 4.69
128 129 0.955919 CCAAGAAGAAGGCCACCGAC 60.956 60.000 5.01 0.00 0.00 4.79
129 130 1.004918 AAGAAGAAGGCCACCGACG 60.005 57.895 5.01 0.00 0.00 5.12
130 131 1.469335 AAGAAGAAGGCCACCGACGA 61.469 55.000 5.01 0.00 0.00 4.20
131 132 1.737008 GAAGAAGGCCACCGACGAC 60.737 63.158 5.01 0.00 0.00 4.34
132 133 3.569049 AAGAAGGCCACCGACGACG 62.569 63.158 5.01 0.00 39.43 5.12
178 179 2.989253 GGTTTGGCCAACCGGAGG 60.989 66.667 20.35 11.39 45.98 4.30
194 195 3.919216 CGGAGGGTATGATCTGTTCATC 58.081 50.000 4.57 0.00 44.13 2.92
195 196 3.306364 CGGAGGGTATGATCTGTTCATCC 60.306 52.174 4.57 6.58 44.13 3.51
196 197 3.008485 GGAGGGTATGATCTGTTCATCCC 59.992 52.174 18.64 18.64 44.13 3.85
197 198 3.946824 AGGGTATGATCTGTTCATCCCT 58.053 45.455 21.00 21.00 46.65 4.20
198 199 4.278975 GGGTATGATCTGTTCATCCCTC 57.721 50.000 18.83 6.02 44.13 4.30
199 200 3.306364 GGGTATGATCTGTTCATCCCTCG 60.306 52.174 18.83 0.00 44.13 4.63
200 201 3.322254 GGTATGATCTGTTCATCCCTCGT 59.678 47.826 4.57 0.00 44.13 4.18
201 202 4.202264 GGTATGATCTGTTCATCCCTCGTT 60.202 45.833 4.57 0.00 44.13 3.85
202 203 3.981071 TGATCTGTTCATCCCTCGTTT 57.019 42.857 0.00 0.00 0.00 3.60
203 204 5.614324 ATGATCTGTTCATCCCTCGTTTA 57.386 39.130 0.00 0.00 41.36 2.01
204 205 4.755411 TGATCTGTTCATCCCTCGTTTAC 58.245 43.478 0.00 0.00 0.00 2.01
205 206 4.466370 TGATCTGTTCATCCCTCGTTTACT 59.534 41.667 0.00 0.00 0.00 2.24
206 207 4.451629 TCTGTTCATCCCTCGTTTACTC 57.548 45.455 0.00 0.00 0.00 2.59
207 208 3.119602 TCTGTTCATCCCTCGTTTACTCG 60.120 47.826 0.00 0.00 0.00 4.18
208 209 2.559668 TGTTCATCCCTCGTTTACTCGT 59.440 45.455 0.00 0.00 0.00 4.18
209 210 3.758023 TGTTCATCCCTCGTTTACTCGTA 59.242 43.478 0.00 0.00 0.00 3.43
210 211 4.101235 GTTCATCCCTCGTTTACTCGTAC 58.899 47.826 0.00 0.00 0.00 3.67
211 212 3.614092 TCATCCCTCGTTTACTCGTACT 58.386 45.455 0.00 0.00 0.00 2.73
212 213 4.012374 TCATCCCTCGTTTACTCGTACTT 58.988 43.478 0.00 0.00 0.00 2.24
213 214 3.837213 TCCCTCGTTTACTCGTACTTG 57.163 47.619 0.00 0.00 0.00 3.16
214 215 3.149196 TCCCTCGTTTACTCGTACTTGT 58.851 45.455 0.00 0.00 0.00 3.16
215 216 3.058016 TCCCTCGTTTACTCGTACTTGTG 60.058 47.826 0.00 0.00 0.00 3.33
216 217 2.660236 CCTCGTTTACTCGTACTTGTGC 59.340 50.000 0.00 0.00 0.00 4.57
217 218 3.562505 CTCGTTTACTCGTACTTGTGCT 58.437 45.455 0.00 0.00 0.00 4.40
218 219 4.378770 CCTCGTTTACTCGTACTTGTGCTA 60.379 45.833 0.00 0.00 0.00 3.49
219 220 4.715896 TCGTTTACTCGTACTTGTGCTAG 58.284 43.478 0.00 0.00 0.00 3.42
220 221 3.300066 CGTTTACTCGTACTTGTGCTAGC 59.700 47.826 8.10 8.10 0.00 3.42
221 222 3.498927 TTACTCGTACTTGTGCTAGCC 57.501 47.619 13.29 4.15 0.00 3.93
222 223 0.170561 ACTCGTACTTGTGCTAGCCG 59.829 55.000 13.29 6.61 0.00 5.52
223 224 0.170561 CTCGTACTTGTGCTAGCCGT 59.829 55.000 13.29 6.77 0.00 5.68
224 225 1.399440 CTCGTACTTGTGCTAGCCGTA 59.601 52.381 13.29 5.78 0.00 4.02
225 226 2.019249 TCGTACTTGTGCTAGCCGTAT 58.981 47.619 13.29 0.00 0.00 3.06
226 227 3.205338 TCGTACTTGTGCTAGCCGTATA 58.795 45.455 13.29 0.00 0.00 1.47
227 228 3.817084 TCGTACTTGTGCTAGCCGTATAT 59.183 43.478 13.29 0.00 0.00 0.86
228 229 3.912563 CGTACTTGTGCTAGCCGTATATG 59.087 47.826 13.29 0.47 0.00 1.78
229 230 4.556104 CGTACTTGTGCTAGCCGTATATGT 60.556 45.833 13.29 3.43 0.00 2.29
230 231 3.717707 ACTTGTGCTAGCCGTATATGTG 58.282 45.455 13.29 0.00 0.00 3.21
231 232 2.148916 TGTGCTAGCCGTATATGTGC 57.851 50.000 13.29 0.00 0.00 4.57
232 233 1.686587 TGTGCTAGCCGTATATGTGCT 59.313 47.619 13.29 11.23 39.10 4.40
233 234 2.061773 GTGCTAGCCGTATATGTGCTG 58.938 52.381 13.29 8.33 36.57 4.41
234 235 1.071605 GCTAGCCGTATATGTGCTGC 58.928 55.000 2.29 12.43 36.57 5.25
235 236 1.337260 GCTAGCCGTATATGTGCTGCT 60.337 52.381 2.29 2.08 36.57 4.24
236 237 2.332104 CTAGCCGTATATGTGCTGCTG 58.668 52.381 14.60 0.00 36.57 4.41
237 238 0.752658 AGCCGTATATGTGCTGCTGA 59.247 50.000 0.00 0.00 33.23 4.26
238 239 1.345741 AGCCGTATATGTGCTGCTGAT 59.654 47.619 0.00 0.00 33.23 2.90
239 240 2.562738 AGCCGTATATGTGCTGCTGATA 59.437 45.455 0.00 0.00 33.23 2.15
240 241 2.926200 GCCGTATATGTGCTGCTGATAG 59.074 50.000 0.00 0.00 0.00 2.08
241 242 3.367395 GCCGTATATGTGCTGCTGATAGA 60.367 47.826 0.00 0.00 0.00 1.98
242 243 4.679106 GCCGTATATGTGCTGCTGATAGAT 60.679 45.833 0.00 0.00 0.00 1.98
243 244 4.802563 CCGTATATGTGCTGCTGATAGATG 59.197 45.833 0.00 0.49 0.00 2.90
244 245 4.802563 CGTATATGTGCTGCTGATAGATGG 59.197 45.833 0.00 0.00 0.00 3.51
245 246 4.904895 ATATGTGCTGCTGATAGATGGT 57.095 40.909 0.00 0.00 0.00 3.55
246 247 3.572632 ATGTGCTGCTGATAGATGGTT 57.427 42.857 0.00 0.00 0.00 3.67
247 248 2.910199 TGTGCTGCTGATAGATGGTTC 58.090 47.619 0.00 0.00 0.00 3.62
248 249 1.863454 GTGCTGCTGATAGATGGTTCG 59.137 52.381 0.00 0.00 0.00 3.95
249 250 0.864455 GCTGCTGATAGATGGTTCGC 59.136 55.000 0.00 0.00 0.00 4.70
250 251 1.539929 GCTGCTGATAGATGGTTCGCT 60.540 52.381 0.00 0.00 0.00 4.93
251 252 2.831333 CTGCTGATAGATGGTTCGCTT 58.169 47.619 0.00 0.00 0.00 4.68
252 253 2.799412 CTGCTGATAGATGGTTCGCTTC 59.201 50.000 0.00 0.00 0.00 3.86
253 254 2.432146 TGCTGATAGATGGTTCGCTTCT 59.568 45.455 0.00 0.00 0.00 2.85
254 255 3.636764 TGCTGATAGATGGTTCGCTTCTA 59.363 43.478 0.00 0.00 0.00 2.10
255 256 4.281941 TGCTGATAGATGGTTCGCTTCTAT 59.718 41.667 0.00 0.00 35.83 1.98
256 257 4.624882 GCTGATAGATGGTTCGCTTCTATG 59.375 45.833 0.00 0.00 33.83 2.23
257 258 5.777802 CTGATAGATGGTTCGCTTCTATGT 58.222 41.667 0.00 0.00 33.83 2.29
258 259 6.161855 TGATAGATGGTTCGCTTCTATGTT 57.838 37.500 0.00 0.00 33.83 2.71
259 260 6.216569 TGATAGATGGTTCGCTTCTATGTTC 58.783 40.000 0.00 0.00 33.83 3.18
260 261 4.744795 AGATGGTTCGCTTCTATGTTCT 57.255 40.909 0.00 0.00 0.00 3.01
261 262 4.437239 AGATGGTTCGCTTCTATGTTCTG 58.563 43.478 0.00 0.00 0.00 3.02
262 263 3.678056 TGGTTCGCTTCTATGTTCTGT 57.322 42.857 0.00 0.00 0.00 3.41
263 264 4.794278 TGGTTCGCTTCTATGTTCTGTA 57.206 40.909 0.00 0.00 0.00 2.74
264 265 4.491676 TGGTTCGCTTCTATGTTCTGTAC 58.508 43.478 0.00 0.00 0.00 2.90
265 266 3.546670 GGTTCGCTTCTATGTTCTGTACG 59.453 47.826 0.00 0.00 0.00 3.67
266 267 4.164294 GTTCGCTTCTATGTTCTGTACGT 58.836 43.478 0.00 0.00 0.00 3.57
267 268 3.754955 TCGCTTCTATGTTCTGTACGTG 58.245 45.455 0.00 0.00 0.00 4.49
268 269 2.279136 CGCTTCTATGTTCTGTACGTGC 59.721 50.000 0.00 0.00 0.00 5.34
269 270 3.512680 GCTTCTATGTTCTGTACGTGCT 58.487 45.455 4.97 0.00 0.00 4.40
270 271 4.669318 GCTTCTATGTTCTGTACGTGCTA 58.331 43.478 4.97 0.00 0.00 3.49
271 272 4.735822 GCTTCTATGTTCTGTACGTGCTAG 59.264 45.833 4.97 1.14 0.00 3.42
272 273 5.676584 GCTTCTATGTTCTGTACGTGCTAGT 60.677 44.000 4.97 0.00 0.00 2.57
273 274 6.457934 GCTTCTATGTTCTGTACGTGCTAGTA 60.458 42.308 4.97 0.00 0.00 1.82
274 275 7.563888 TTCTATGTTCTGTACGTGCTAGTAT 57.436 36.000 4.97 0.00 0.00 2.12
275 276 6.956047 TCTATGTTCTGTACGTGCTAGTATG 58.044 40.000 4.97 0.00 0.00 2.39
276 277 3.766151 TGTTCTGTACGTGCTAGTATGC 58.234 45.455 4.97 0.00 0.00 3.14
277 278 3.442625 TGTTCTGTACGTGCTAGTATGCT 59.557 43.478 4.97 0.00 0.00 3.79
278 279 4.082408 TGTTCTGTACGTGCTAGTATGCTT 60.082 41.667 4.97 0.00 0.00 3.91
279 280 5.124297 TGTTCTGTACGTGCTAGTATGCTTA 59.876 40.000 4.97 0.00 0.00 3.09
280 281 5.419760 TCTGTACGTGCTAGTATGCTTAG 57.580 43.478 4.97 0.00 0.00 2.18
281 282 4.275196 TCTGTACGTGCTAGTATGCTTAGG 59.725 45.833 4.97 0.00 0.00 2.69
282 283 3.949754 TGTACGTGCTAGTATGCTTAGGT 59.050 43.478 4.97 0.00 0.00 3.08
283 284 5.125356 TGTACGTGCTAGTATGCTTAGGTA 58.875 41.667 4.97 0.00 0.00 3.08
284 285 5.766670 TGTACGTGCTAGTATGCTTAGGTAT 59.233 40.000 4.97 0.00 0.00 2.73
285 286 5.373981 ACGTGCTAGTATGCTTAGGTATC 57.626 43.478 0.00 0.00 0.00 2.24
286 287 4.083431 ACGTGCTAGTATGCTTAGGTATCG 60.083 45.833 0.00 0.00 0.00 2.92
287 288 4.167268 GTGCTAGTATGCTTAGGTATCGC 58.833 47.826 0.00 0.00 0.00 4.58
288 289 4.079970 TGCTAGTATGCTTAGGTATCGCT 58.920 43.478 0.00 0.00 0.00 4.93
289 290 5.123502 GTGCTAGTATGCTTAGGTATCGCTA 59.876 44.000 0.00 0.00 0.00 4.26
290 291 5.886474 TGCTAGTATGCTTAGGTATCGCTAT 59.114 40.000 0.00 0.00 0.00 2.97
291 292 6.183360 TGCTAGTATGCTTAGGTATCGCTATG 60.183 42.308 0.00 0.00 0.00 2.23
292 293 6.038382 GCTAGTATGCTTAGGTATCGCTATGA 59.962 42.308 0.00 0.00 0.00 2.15
293 294 6.443934 AGTATGCTTAGGTATCGCTATGAG 57.556 41.667 0.00 0.00 0.00 2.90
294 295 6.181190 AGTATGCTTAGGTATCGCTATGAGA 58.819 40.000 0.00 0.00 0.00 3.27
295 296 6.831353 AGTATGCTTAGGTATCGCTATGAGAT 59.169 38.462 0.00 0.00 0.00 2.75
296 297 5.316327 TGCTTAGGTATCGCTATGAGATG 57.684 43.478 0.00 0.00 0.00 2.90
297 298 4.109050 GCTTAGGTATCGCTATGAGATGC 58.891 47.826 0.00 0.00 0.00 3.91
298 299 4.380973 GCTTAGGTATCGCTATGAGATGCA 60.381 45.833 0.00 0.00 33.32 3.96
299 300 5.680922 GCTTAGGTATCGCTATGAGATGCAT 60.681 44.000 0.00 0.00 41.08 3.96
300 301 6.460261 GCTTAGGTATCGCTATGAGATGCATA 60.460 42.308 0.00 0.00 38.44 3.14
301 302 5.255710 AGGTATCGCTATGAGATGCATAC 57.744 43.478 0.00 0.00 38.44 2.39
302 303 4.098654 AGGTATCGCTATGAGATGCATACC 59.901 45.833 0.00 0.00 40.02 2.73
303 304 2.636768 TCGCTATGAGATGCATACCG 57.363 50.000 0.00 0.00 39.02 4.02
304 305 1.886542 TCGCTATGAGATGCATACCGT 59.113 47.619 0.00 0.00 38.84 4.83
305 306 2.296190 TCGCTATGAGATGCATACCGTT 59.704 45.455 0.00 0.00 38.84 4.44
306 307 3.059884 CGCTATGAGATGCATACCGTTT 58.940 45.455 0.00 0.00 38.44 3.60
307 308 4.022676 TCGCTATGAGATGCATACCGTTTA 60.023 41.667 0.00 0.00 38.84 2.01
308 309 4.864806 CGCTATGAGATGCATACCGTTTAT 59.135 41.667 0.00 0.00 38.44 1.40
309 310 5.220284 CGCTATGAGATGCATACCGTTTATG 60.220 44.000 0.00 0.00 38.44 1.90
315 316 2.050477 GCATACCGTTTATGCCATGC 57.950 50.000 12.99 0.00 43.18 4.06
316 317 1.608590 GCATACCGTTTATGCCATGCT 59.391 47.619 12.99 0.00 43.18 3.79
317 318 2.034558 GCATACCGTTTATGCCATGCTT 59.965 45.455 12.99 0.00 43.18 3.91
318 319 3.252215 GCATACCGTTTATGCCATGCTTA 59.748 43.478 12.99 0.00 43.18 3.09
319 320 4.783242 CATACCGTTTATGCCATGCTTAC 58.217 43.478 0.00 0.00 0.00 2.34
320 321 2.999331 ACCGTTTATGCCATGCTTACT 58.001 42.857 0.00 0.00 0.00 2.24
321 322 2.943033 ACCGTTTATGCCATGCTTACTC 59.057 45.455 0.00 0.00 0.00 2.59
322 323 3.206150 CCGTTTATGCCATGCTTACTCT 58.794 45.455 0.00 0.00 0.00 3.24
323 324 3.627577 CCGTTTATGCCATGCTTACTCTT 59.372 43.478 0.00 0.00 0.00 2.85
324 325 4.096382 CCGTTTATGCCATGCTTACTCTTT 59.904 41.667 0.00 0.00 0.00 2.52
325 326 5.295787 CCGTTTATGCCATGCTTACTCTTTA 59.704 40.000 0.00 0.00 0.00 1.85
326 327 6.192360 CGTTTATGCCATGCTTACTCTTTAC 58.808 40.000 0.00 0.00 0.00 2.01
327 328 6.037172 CGTTTATGCCATGCTTACTCTTTACT 59.963 38.462 0.00 0.00 0.00 2.24
328 329 7.410485 GTTTATGCCATGCTTACTCTTTACTC 58.590 38.462 0.00 0.00 0.00 2.59
329 330 3.521560 TGCCATGCTTACTCTTTACTCG 58.478 45.455 0.00 0.00 0.00 4.18
330 331 3.056107 TGCCATGCTTACTCTTTACTCGT 60.056 43.478 0.00 0.00 0.00 4.18
331 332 3.307242 GCCATGCTTACTCTTTACTCGTG 59.693 47.826 0.00 0.00 0.00 4.35
332 333 3.865745 CCATGCTTACTCTTTACTCGTGG 59.134 47.826 0.00 0.00 0.00 4.94
333 334 4.381612 CCATGCTTACTCTTTACTCGTGGA 60.382 45.833 0.00 0.00 32.44 4.02
334 335 5.352284 CATGCTTACTCTTTACTCGTGGAT 58.648 41.667 0.00 0.00 0.00 3.41
335 336 5.401531 TGCTTACTCTTTACTCGTGGATT 57.598 39.130 0.00 0.00 0.00 3.01
336 337 6.519679 TGCTTACTCTTTACTCGTGGATTA 57.480 37.500 0.00 0.00 0.00 1.75
337 338 6.561614 TGCTTACTCTTTACTCGTGGATTAG 58.438 40.000 0.00 0.00 0.00 1.73
338 339 6.376299 TGCTTACTCTTTACTCGTGGATTAGA 59.624 38.462 0.00 0.00 0.00 2.10
339 340 7.068348 TGCTTACTCTTTACTCGTGGATTAGAT 59.932 37.037 0.00 0.00 0.00 1.98
340 341 7.921745 GCTTACTCTTTACTCGTGGATTAGATT 59.078 37.037 0.00 0.00 0.00 2.40
344 345 9.968870 ACTCTTTACTCGTGGATTAGATTAATC 57.031 33.333 7.41 7.41 42.94 1.75
345 346 9.119329 CTCTTTACTCGTGGATTAGATTAATCG 57.881 37.037 9.78 0.00 44.24 3.34
346 347 8.080417 TCTTTACTCGTGGATTAGATTAATCGG 58.920 37.037 9.78 0.00 44.24 4.18
347 348 7.514784 TTACTCGTGGATTAGATTAATCGGA 57.485 36.000 9.78 3.32 44.24 4.55
348 349 6.401047 ACTCGTGGATTAGATTAATCGGAA 57.599 37.500 9.78 8.72 44.24 4.30
349 350 6.812998 ACTCGTGGATTAGATTAATCGGAAA 58.187 36.000 9.78 6.60 44.24 3.13
350 351 7.270047 ACTCGTGGATTAGATTAATCGGAAAA 58.730 34.615 9.78 4.34 44.24 2.29
351 352 7.767198 ACTCGTGGATTAGATTAATCGGAAAAA 59.233 33.333 9.78 2.12 44.24 1.94
352 353 8.671384 TCGTGGATTAGATTAATCGGAAAAAT 57.329 30.769 9.78 6.34 44.24 1.82
353 354 8.556194 TCGTGGATTAGATTAATCGGAAAAATG 58.444 33.333 9.78 2.78 44.24 2.32
354 355 7.323656 CGTGGATTAGATTAATCGGAAAAATGC 59.676 37.037 9.78 10.80 44.24 3.56
355 356 8.352942 GTGGATTAGATTAATCGGAAAAATGCT 58.647 33.333 9.78 0.00 44.24 3.79
356 357 9.567776 TGGATTAGATTAATCGGAAAAATGCTA 57.432 29.630 9.78 0.00 44.24 3.49
377 378 9.851686 ATGCTAATATTTCCAACATTCTCTACA 57.148 29.630 0.00 0.00 0.00 2.74
378 379 9.851686 TGCTAATATTTCCAACATTCTCTACAT 57.148 29.630 0.00 0.00 0.00 2.29
382 383 8.824159 ATATTTCCAACATTCTCTACATCGAG 57.176 34.615 0.00 0.00 0.00 4.04
383 384 5.661056 TTCCAACATTCTCTACATCGAGT 57.339 39.130 0.00 0.00 32.83 4.18
384 385 4.998788 TCCAACATTCTCTACATCGAGTG 58.001 43.478 0.00 0.00 32.83 3.51
385 386 4.705023 TCCAACATTCTCTACATCGAGTGA 59.295 41.667 0.00 0.00 32.83 3.41
421 422 0.031585 CCGAAGAGACGACCACACAA 59.968 55.000 0.00 0.00 35.09 3.33
447 448 7.924412 AGACCTATACAACCGTATACAACAATG 59.076 37.037 3.32 0.00 39.17 2.82
469 475 3.798202 CTGCAGTTACATTAGAGTCCCC 58.202 50.000 5.25 0.00 0.00 4.81
506 524 1.204941 AGTCATACGCTCCAACTGACC 59.795 52.381 0.00 0.00 37.52 4.02
509 527 1.956629 ATACGCTCCAACTGACCCCG 61.957 60.000 0.00 0.00 0.00 5.73
510 528 4.003788 CGCTCCAACTGACCCCGT 62.004 66.667 0.00 0.00 0.00 5.28
511 529 2.047179 GCTCCAACTGACCCCGTC 60.047 66.667 0.00 0.00 0.00 4.79
904 973 0.970937 AGAAGCCCTTCGATCGTCCA 60.971 55.000 15.94 0.00 43.97 4.02
920 989 4.270834 TCGTCCAGTCTAGCTATTTCTGT 58.729 43.478 14.45 0.00 0.00 3.41
966 1073 3.668491 CGGATTCGAGTAGCTAGCTTAGC 60.668 52.174 24.88 13.56 44.96 3.09
1298 1434 3.058160 GTGCGTGCAGGAATGGCT 61.058 61.111 11.29 0.00 0.00 4.75
1626 1763 1.891919 GGTGGCTCGAACTGTGCAA 60.892 57.895 0.00 0.00 38.83 4.08
1648 1785 6.484540 CAAAGAATCATCTTCAATCAGTCCG 58.515 40.000 0.00 0.00 45.19 4.79
1700 1838 4.444720 CGAACGATTAGATAAGGAGTTGGC 59.555 45.833 0.00 0.00 0.00 4.52
1891 2186 7.082602 AGCGACTCATTTTATAATCGATACGT 58.917 34.615 0.00 0.00 0.00 3.57
1892 2187 8.232513 AGCGACTCATTTTATAATCGATACGTA 58.767 33.333 0.00 0.00 0.00 3.57
1893 2188 8.302750 GCGACTCATTTTATAATCGATACGTAC 58.697 37.037 0.00 0.00 0.00 3.67
1894 2189 8.502842 CGACTCATTTTATAATCGATACGTACG 58.497 37.037 15.01 15.01 0.00 3.67
1935 2230 3.438087 GCACCTTCCGATCATATGGATTG 59.562 47.826 2.13 0.00 36.00 2.67
1952 2247 4.513692 TGGATTGAAATTCGTTCGTGACTT 59.486 37.500 0.00 0.00 39.30 3.01
1959 2254 5.763444 AATTCGTTCGTGACTTATCAGTG 57.237 39.130 0.00 0.00 34.75 3.66
2412 2899 4.194720 GCTCGATGCTCGACCCGT 62.195 66.667 4.47 0.00 44.82 5.28
2487 2995 1.945819 GCAAGCCGTTCTGAGAATCCA 60.946 52.381 0.00 0.00 0.00 3.41
2601 3124 4.633126 CGTTGGATGGCAGATATCAATAGG 59.367 45.833 5.32 0.00 0.00 2.57
2612 3135 2.355010 ATCAATAGGGCACAAGGAGC 57.645 50.000 0.00 0.00 0.00 4.70
2666 3190 2.126031 GTTCGAGGAGGGACGCAC 60.126 66.667 0.00 0.00 0.00 5.34
2691 3215 1.991121 ACTGTACTCGGTCTTGGTGA 58.009 50.000 0.00 0.00 0.00 4.02
2784 3308 6.658188 TTTATACCTTTGTCTTGTTTGGGG 57.342 37.500 0.00 0.00 0.00 4.96
2909 6065 8.783833 TCTTTTTATTGACAGGAGAAGATCAG 57.216 34.615 0.00 0.00 0.00 2.90
2934 6090 0.322816 ATGCAATCCAGGACGTTGCT 60.323 50.000 22.84 10.20 46.22 3.91
2935 6091 1.236616 TGCAATCCAGGACGTTGCTG 61.237 55.000 22.84 4.04 46.22 4.41
2967 6123 0.606401 ACCAATCAGTCTTGCCACGG 60.606 55.000 0.00 0.00 0.00 4.94
2976 6132 1.204941 GTCTTGCCACGGATAGTCTGT 59.795 52.381 0.00 0.00 36.16 3.41
2983 6139 3.510388 CACGGATAGTCTGTGTCACAT 57.490 47.619 6.03 0.00 46.05 3.21
3015 6182 3.572682 ACGACAACTCATAGGTGAAGACA 59.427 43.478 0.00 0.00 33.95 3.41
3028 6195 1.337071 TGAAGACACGGATCGGATAGC 59.663 52.381 7.35 0.00 0.00 2.97
3034 6201 2.665603 GGATCGGATAGCCTGGGC 59.334 66.667 3.00 3.00 42.33 5.36
3054 6277 3.197790 CGCGAGGGGCAGACAATG 61.198 66.667 0.00 0.00 43.84 2.82
3136 6359 2.364780 GGTGGGGAGGACCTTACGG 61.365 68.421 0.00 0.00 40.03 4.02
3270 6493 1.595357 GTGAAGGGGTAGTCCACGG 59.405 63.158 0.00 0.00 43.05 4.94
3285 6508 0.611200 CACGGGTAGGTGGTTCATCA 59.389 55.000 0.00 0.00 34.27 3.07
3367 6591 5.590530 AAGCAGTCAACCATAAAACAACA 57.409 34.783 0.00 0.00 0.00 3.33
3402 6626 5.419542 CCAACCAGATGAAGAACTTCGATA 58.580 41.667 9.51 0.00 42.28 2.92
3425 6653 2.627699 ACATCCCAAGTGCGACAATTTT 59.372 40.909 0.00 0.00 0.00 1.82
3466 6694 1.296392 GGCCCCAAAGAACAATGCC 59.704 57.895 0.00 0.00 0.00 4.40
3468 6696 0.247460 GCCCCAAAGAACAATGCCTC 59.753 55.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.574702 CGAGACGCTCCCCAAAAACC 61.575 60.000 2.00 0.00 0.00 3.27
1 2 0.601841 TCGAGACGCTCCCCAAAAAC 60.602 55.000 2.00 0.00 0.00 2.43
2 3 0.601841 GTCGAGACGCTCCCCAAAAA 60.602 55.000 0.00 0.00 0.00 1.94
3 4 1.005394 GTCGAGACGCTCCCCAAAA 60.005 57.895 0.00 0.00 0.00 2.44
4 5 2.654877 GTCGAGACGCTCCCCAAA 59.345 61.111 0.00 0.00 0.00 3.28
14 15 2.574736 GAGCAGTCGCGTCGAGAC 60.575 66.667 19.85 19.85 45.49 3.36
15 16 3.800863 GGAGCAGTCGCGTCGAGA 61.801 66.667 5.77 0.00 45.49 4.04
16 17 4.838486 GGGAGCAGTCGCGTCGAG 62.838 72.222 5.77 0.00 45.49 4.04
22 23 4.933064 CGGATCGGGAGCAGTCGC 62.933 72.222 0.00 0.00 38.99 5.19
23 24 3.471244 GACGGATCGGGAGCAGTCG 62.471 68.421 5.18 0.00 32.92 4.18
24 25 2.413765 GACGGATCGGGAGCAGTC 59.586 66.667 5.18 1.77 35.12 3.51
25 26 3.148279 GGACGGATCGGGAGCAGT 61.148 66.667 5.18 0.00 0.00 4.40
26 27 3.917760 GGGACGGATCGGGAGCAG 61.918 72.222 5.18 0.00 0.00 4.24
29 30 2.762459 TTGGGGACGGATCGGGAG 60.762 66.667 5.18 0.00 0.00 4.30
30 31 3.078836 GTTGGGGACGGATCGGGA 61.079 66.667 5.18 0.00 0.00 5.14
31 32 2.193087 AAAGTTGGGGACGGATCGGG 62.193 60.000 5.18 0.00 0.00 5.14
32 33 1.024579 CAAAGTTGGGGACGGATCGG 61.025 60.000 0.00 0.00 0.00 4.18
33 34 0.321298 ACAAAGTTGGGGACGGATCG 60.321 55.000 0.00 0.00 0.00 3.69
34 35 1.450025 GACAAAGTTGGGGACGGATC 58.550 55.000 0.00 0.00 0.00 3.36
35 36 0.037734 GGACAAAGTTGGGGACGGAT 59.962 55.000 0.00 0.00 0.00 4.18
36 37 1.452801 GGACAAAGTTGGGGACGGA 59.547 57.895 0.00 0.00 0.00 4.69
37 38 1.964373 CGGACAAAGTTGGGGACGG 60.964 63.158 0.00 0.00 0.00 4.79
38 39 2.613506 GCGGACAAAGTTGGGGACG 61.614 63.158 0.00 0.00 0.00 4.79
39 40 2.265904 GGCGGACAAAGTTGGGGAC 61.266 63.158 0.00 0.00 0.00 4.46
40 41 2.114411 GGCGGACAAAGTTGGGGA 59.886 61.111 0.00 0.00 0.00 4.81
41 42 1.971695 GAGGCGGACAAAGTTGGGG 60.972 63.158 0.00 0.00 0.00 4.96
42 43 0.323629 TAGAGGCGGACAAAGTTGGG 59.676 55.000 0.00 0.00 0.00 4.12
43 44 1.002087 AGTAGAGGCGGACAAAGTTGG 59.998 52.381 0.00 0.00 0.00 3.77
44 45 2.457366 AGTAGAGGCGGACAAAGTTG 57.543 50.000 0.00 0.00 0.00 3.16
45 46 2.289506 GGAAGTAGAGGCGGACAAAGTT 60.290 50.000 0.00 0.00 0.00 2.66
46 47 1.275573 GGAAGTAGAGGCGGACAAAGT 59.724 52.381 0.00 0.00 0.00 2.66
47 48 1.275291 TGGAAGTAGAGGCGGACAAAG 59.725 52.381 0.00 0.00 0.00 2.77
48 49 1.001633 GTGGAAGTAGAGGCGGACAAA 59.998 52.381 0.00 0.00 0.00 2.83
49 50 0.606604 GTGGAAGTAGAGGCGGACAA 59.393 55.000 0.00 0.00 0.00 3.18
50 51 0.251653 AGTGGAAGTAGAGGCGGACA 60.252 55.000 0.00 0.00 0.00 4.02
51 52 1.404748 GTAGTGGAAGTAGAGGCGGAC 59.595 57.143 0.00 0.00 0.00 4.79
52 53 1.284198 AGTAGTGGAAGTAGAGGCGGA 59.716 52.381 0.00 0.00 0.00 5.54
53 54 1.765230 AGTAGTGGAAGTAGAGGCGG 58.235 55.000 0.00 0.00 0.00 6.13
54 55 2.099427 GGAAGTAGTGGAAGTAGAGGCG 59.901 54.545 0.00 0.00 0.00 5.52
55 56 2.431419 GGGAAGTAGTGGAAGTAGAGGC 59.569 54.545 0.00 0.00 0.00 4.70
56 57 3.032459 GGGGAAGTAGTGGAAGTAGAGG 58.968 54.545 0.00 0.00 0.00 3.69
57 58 3.702045 CAGGGGAAGTAGTGGAAGTAGAG 59.298 52.174 0.00 0.00 0.00 2.43
58 59 3.709587 CAGGGGAAGTAGTGGAAGTAGA 58.290 50.000 0.00 0.00 0.00 2.59
59 60 2.168728 GCAGGGGAAGTAGTGGAAGTAG 59.831 54.545 0.00 0.00 0.00 2.57
60 61 2.185387 GCAGGGGAAGTAGTGGAAGTA 58.815 52.381 0.00 0.00 0.00 2.24
61 62 0.984995 GCAGGGGAAGTAGTGGAAGT 59.015 55.000 0.00 0.00 0.00 3.01
62 63 0.984230 TGCAGGGGAAGTAGTGGAAG 59.016 55.000 0.00 0.00 0.00 3.46
63 64 1.559682 GATGCAGGGGAAGTAGTGGAA 59.440 52.381 0.00 0.00 0.00 3.53
64 65 1.204146 GATGCAGGGGAAGTAGTGGA 58.796 55.000 0.00 0.00 0.00 4.02
65 66 0.179073 CGATGCAGGGGAAGTAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
66 67 0.824109 TCGATGCAGGGGAAGTAGTG 59.176 55.000 0.00 0.00 0.00 2.74
67 68 0.824759 GTCGATGCAGGGGAAGTAGT 59.175 55.000 0.00 0.00 0.00 2.73
68 69 0.105039 GGTCGATGCAGGGGAAGTAG 59.895 60.000 0.00 0.00 0.00 2.57
69 70 1.335132 GGGTCGATGCAGGGGAAGTA 61.335 60.000 0.00 0.00 0.00 2.24
70 71 2.670148 GGGTCGATGCAGGGGAAGT 61.670 63.158 0.00 0.00 0.00 3.01
71 72 2.190578 GGGTCGATGCAGGGGAAG 59.809 66.667 0.00 0.00 0.00 3.46
72 73 3.407967 GGGGTCGATGCAGGGGAA 61.408 66.667 0.00 0.00 0.00 3.97
73 74 4.731853 TGGGGTCGATGCAGGGGA 62.732 66.667 0.00 0.00 0.00 4.81
74 75 3.492353 ATGGGGTCGATGCAGGGG 61.492 66.667 0.00 0.00 0.00 4.79
75 76 2.203252 CATGGGGTCGATGCAGGG 60.203 66.667 0.00 0.00 0.00 4.45
76 77 2.203252 CCATGGGGTCGATGCAGG 60.203 66.667 2.85 0.00 0.00 4.85
77 78 2.903855 GCCATGGGGTCGATGCAG 60.904 66.667 15.13 0.00 36.17 4.41
78 79 3.410628 AGCCATGGGGTCGATGCA 61.411 61.111 15.13 0.00 36.17 3.96
79 80 2.903855 CAGCCATGGGGTCGATGC 60.904 66.667 15.13 0.00 36.17 3.91
80 81 1.524621 GTCAGCCATGGGGTCGATG 60.525 63.158 15.13 0.00 36.17 3.84
81 82 2.911143 GTCAGCCATGGGGTCGAT 59.089 61.111 15.13 0.00 36.17 3.59
82 83 3.770040 CGTCAGCCATGGGGTCGA 61.770 66.667 15.13 0.00 36.17 4.20
83 84 3.770040 TCGTCAGCCATGGGGTCG 61.770 66.667 15.13 6.97 36.17 4.79
84 85 2.125106 GTCGTCAGCCATGGGGTC 60.125 66.667 15.13 0.00 36.17 4.46
85 86 4.082523 CGTCGTCAGCCATGGGGT 62.083 66.667 15.13 0.00 36.17 4.95
102 103 3.804193 CTTCTTCTTGGCGGCGGC 61.804 66.667 27.76 27.76 38.90 6.53
103 104 3.127533 CCTTCTTCTTGGCGGCGG 61.128 66.667 9.78 0.00 0.00 6.13
104 105 3.804193 GCCTTCTTCTTGGCGGCG 61.804 66.667 0.51 0.51 39.71 6.46
109 110 0.955919 GTCGGTGGCCTTCTTCTTGG 60.956 60.000 3.32 0.00 0.00 3.61
110 111 1.291877 CGTCGGTGGCCTTCTTCTTG 61.292 60.000 3.32 0.00 0.00 3.02
111 112 1.004918 CGTCGGTGGCCTTCTTCTT 60.005 57.895 3.32 0.00 0.00 2.52
112 113 1.906824 TCGTCGGTGGCCTTCTTCT 60.907 57.895 3.32 0.00 0.00 2.85
113 114 1.737008 GTCGTCGGTGGCCTTCTTC 60.737 63.158 3.32 0.00 0.00 2.87
114 115 2.342648 GTCGTCGGTGGCCTTCTT 59.657 61.111 3.32 0.00 0.00 2.52
115 116 4.052229 CGTCGTCGGTGGCCTTCT 62.052 66.667 3.32 0.00 0.00 2.85
162 163 2.414658 TACCCTCCGGTTGGCCAAAC 62.415 60.000 24.37 24.37 40.58 2.93
163 164 1.502527 ATACCCTCCGGTTGGCCAAA 61.503 55.000 22.47 3.06 40.58 3.28
164 165 1.926489 ATACCCTCCGGTTGGCCAA 60.926 57.895 16.05 16.05 40.58 4.52
165 166 2.285818 ATACCCTCCGGTTGGCCA 60.286 61.111 0.00 0.00 40.58 5.36
166 167 1.705997 ATCATACCCTCCGGTTGGCC 61.706 60.000 0.00 0.00 40.58 5.36
167 168 0.250338 GATCATACCCTCCGGTTGGC 60.250 60.000 0.00 0.00 40.58 4.52
168 169 1.070758 CAGATCATACCCTCCGGTTGG 59.929 57.143 0.00 5.83 40.58 3.77
169 170 1.762957 ACAGATCATACCCTCCGGTTG 59.237 52.381 0.00 0.00 40.58 3.77
170 171 2.176247 ACAGATCATACCCTCCGGTT 57.824 50.000 0.00 0.00 40.58 4.44
171 172 2.625883 TGAACAGATCATACCCTCCGGT 60.626 50.000 0.00 0.00 38.58 5.28
172 173 2.039418 TGAACAGATCATACCCTCCGG 58.961 52.381 0.00 0.00 31.50 5.14
181 182 9.753591 CGAGTAAACGAGGGATGAACAGATCAT 62.754 44.444 0.00 0.00 42.58 2.45
182 183 3.981071 AAACGAGGGATGAACAGATCA 57.019 42.857 0.00 0.00 43.67 2.92
183 184 5.012328 AGTAAACGAGGGATGAACAGATC 57.988 43.478 0.00 0.00 0.00 2.75
184 185 4.440250 CGAGTAAACGAGGGATGAACAGAT 60.440 45.833 0.00 0.00 35.09 2.90
185 186 3.119602 CGAGTAAACGAGGGATGAACAGA 60.120 47.826 0.00 0.00 35.09 3.41
186 187 3.179830 CGAGTAAACGAGGGATGAACAG 58.820 50.000 0.00 0.00 35.09 3.16
187 188 2.559668 ACGAGTAAACGAGGGATGAACA 59.440 45.455 0.00 0.00 37.03 3.18
188 189 3.227810 ACGAGTAAACGAGGGATGAAC 57.772 47.619 0.00 0.00 37.03 3.18
189 190 4.012374 AGTACGAGTAAACGAGGGATGAA 58.988 43.478 0.00 0.00 37.03 2.57
190 191 3.614092 AGTACGAGTAAACGAGGGATGA 58.386 45.455 0.00 0.00 37.03 2.92
191 192 4.103357 CAAGTACGAGTAAACGAGGGATG 58.897 47.826 0.00 0.00 37.03 3.51
192 193 3.760684 ACAAGTACGAGTAAACGAGGGAT 59.239 43.478 0.00 0.00 37.03 3.85
193 194 3.058016 CACAAGTACGAGTAAACGAGGGA 60.058 47.826 0.00 0.00 37.03 4.20
194 195 3.240069 CACAAGTACGAGTAAACGAGGG 58.760 50.000 0.00 0.00 37.03 4.30
195 196 2.660236 GCACAAGTACGAGTAAACGAGG 59.340 50.000 0.00 0.00 37.03 4.63
196 197 3.562505 AGCACAAGTACGAGTAAACGAG 58.437 45.455 0.00 0.00 37.03 4.18
197 198 3.631145 AGCACAAGTACGAGTAAACGA 57.369 42.857 0.00 0.00 37.03 3.85
198 199 3.300066 GCTAGCACAAGTACGAGTAAACG 59.700 47.826 10.63 0.00 39.31 3.60
199 200 3.611549 GGCTAGCACAAGTACGAGTAAAC 59.388 47.826 18.24 0.00 0.00 2.01
200 201 3.671433 CGGCTAGCACAAGTACGAGTAAA 60.671 47.826 18.24 0.00 0.00 2.01
201 202 2.159476 CGGCTAGCACAAGTACGAGTAA 60.159 50.000 18.24 0.00 0.00 2.24
202 203 1.399440 CGGCTAGCACAAGTACGAGTA 59.601 52.381 18.24 0.00 0.00 2.59
203 204 0.170561 CGGCTAGCACAAGTACGAGT 59.829 55.000 18.24 0.00 0.00 4.18
204 205 0.170561 ACGGCTAGCACAAGTACGAG 59.829 55.000 18.24 0.00 0.00 4.18
205 206 1.452110 TACGGCTAGCACAAGTACGA 58.548 50.000 18.24 0.00 0.00 3.43
206 207 2.486951 ATACGGCTAGCACAAGTACG 57.513 50.000 18.24 11.28 0.00 3.67
207 208 4.680110 CACATATACGGCTAGCACAAGTAC 59.320 45.833 18.24 0.00 0.00 2.73
208 209 4.794981 GCACATATACGGCTAGCACAAGTA 60.795 45.833 18.24 14.37 0.00 2.24
209 210 3.717707 CACATATACGGCTAGCACAAGT 58.282 45.455 18.24 12.66 0.00 3.16
210 211 2.476619 GCACATATACGGCTAGCACAAG 59.523 50.000 18.24 7.11 0.00 3.16
211 212 2.102420 AGCACATATACGGCTAGCACAA 59.898 45.455 18.24 0.29 35.82 3.33
212 213 1.686587 AGCACATATACGGCTAGCACA 59.313 47.619 18.24 0.28 35.82 4.57
213 214 2.061773 CAGCACATATACGGCTAGCAC 58.938 52.381 18.24 5.06 35.82 4.40
214 215 1.605457 GCAGCACATATACGGCTAGCA 60.605 52.381 18.24 0.00 35.82 3.49
215 216 1.071605 GCAGCACATATACGGCTAGC 58.928 55.000 6.04 6.04 35.82 3.42
216 217 2.029918 TCAGCAGCACATATACGGCTAG 60.030 50.000 0.00 0.00 35.50 3.42
217 218 1.960689 TCAGCAGCACATATACGGCTA 59.039 47.619 0.00 0.00 35.50 3.93
218 219 0.752658 TCAGCAGCACATATACGGCT 59.247 50.000 0.00 0.00 37.85 5.52
219 220 1.800805 ATCAGCAGCACATATACGGC 58.199 50.000 0.00 0.00 0.00 5.68
220 221 4.440839 TCTATCAGCAGCACATATACGG 57.559 45.455 0.00 0.00 0.00 4.02
221 222 4.802563 CCATCTATCAGCAGCACATATACG 59.197 45.833 0.00 0.00 0.00 3.06
222 223 5.728471 ACCATCTATCAGCAGCACATATAC 58.272 41.667 0.00 0.00 0.00 1.47
223 224 6.364568 AACCATCTATCAGCAGCACATATA 57.635 37.500 0.00 0.00 0.00 0.86
224 225 4.904895 ACCATCTATCAGCAGCACATAT 57.095 40.909 0.00 0.00 0.00 1.78
225 226 4.635223 GAACCATCTATCAGCAGCACATA 58.365 43.478 0.00 0.00 0.00 2.29
226 227 3.474600 GAACCATCTATCAGCAGCACAT 58.525 45.455 0.00 0.00 0.00 3.21
227 228 2.739609 CGAACCATCTATCAGCAGCACA 60.740 50.000 0.00 0.00 0.00 4.57
228 229 1.863454 CGAACCATCTATCAGCAGCAC 59.137 52.381 0.00 0.00 0.00 4.40
229 230 1.807755 GCGAACCATCTATCAGCAGCA 60.808 52.381 0.00 0.00 0.00 4.41
230 231 0.864455 GCGAACCATCTATCAGCAGC 59.136 55.000 0.00 0.00 0.00 5.25
231 232 2.522836 AGCGAACCATCTATCAGCAG 57.477 50.000 0.00 0.00 0.00 4.24
232 233 2.432146 AGAAGCGAACCATCTATCAGCA 59.568 45.455 0.00 0.00 0.00 4.41
233 234 3.104843 AGAAGCGAACCATCTATCAGC 57.895 47.619 0.00 0.00 0.00 4.26
234 235 5.777802 ACATAGAAGCGAACCATCTATCAG 58.222 41.667 0.00 0.00 34.89 2.90
235 236 5.791336 ACATAGAAGCGAACCATCTATCA 57.209 39.130 0.00 0.00 34.89 2.15
236 237 6.364706 CAGAACATAGAAGCGAACCATCTATC 59.635 42.308 0.00 0.00 34.89 2.08
237 238 6.183360 ACAGAACATAGAAGCGAACCATCTAT 60.183 38.462 0.00 0.00 36.96 1.98
238 239 5.127194 ACAGAACATAGAAGCGAACCATCTA 59.873 40.000 0.00 0.00 0.00 1.98
239 240 4.081420 ACAGAACATAGAAGCGAACCATCT 60.081 41.667 0.00 0.00 0.00 2.90
240 241 4.184629 ACAGAACATAGAAGCGAACCATC 58.815 43.478 0.00 0.00 0.00 3.51
241 242 4.207891 ACAGAACATAGAAGCGAACCAT 57.792 40.909 0.00 0.00 0.00 3.55
242 243 3.678056 ACAGAACATAGAAGCGAACCA 57.322 42.857 0.00 0.00 0.00 3.67
243 244 3.546670 CGTACAGAACATAGAAGCGAACC 59.453 47.826 0.00 0.00 0.00 3.62
244 245 4.030306 CACGTACAGAACATAGAAGCGAAC 59.970 45.833 0.00 0.00 0.00 3.95
245 246 4.163552 CACGTACAGAACATAGAAGCGAA 58.836 43.478 0.00 0.00 0.00 4.70
246 247 3.754955 CACGTACAGAACATAGAAGCGA 58.245 45.455 0.00 0.00 0.00 4.93
247 248 2.279136 GCACGTACAGAACATAGAAGCG 59.721 50.000 0.00 0.00 0.00 4.68
248 249 3.512680 AGCACGTACAGAACATAGAAGC 58.487 45.455 0.00 0.00 0.00 3.86
249 250 5.881447 ACTAGCACGTACAGAACATAGAAG 58.119 41.667 0.00 0.00 0.00 2.85
250 251 5.892160 ACTAGCACGTACAGAACATAGAA 57.108 39.130 0.00 0.00 0.00 2.10
251 252 6.512903 GCATACTAGCACGTACAGAACATAGA 60.513 42.308 0.00 0.00 0.00 1.98
252 253 5.625721 GCATACTAGCACGTACAGAACATAG 59.374 44.000 0.00 0.00 0.00 2.23
253 254 5.298527 AGCATACTAGCACGTACAGAACATA 59.701 40.000 0.00 0.00 36.85 2.29
254 255 4.098044 AGCATACTAGCACGTACAGAACAT 59.902 41.667 0.00 0.00 36.85 2.71
255 256 3.442625 AGCATACTAGCACGTACAGAACA 59.557 43.478 0.00 0.00 36.85 3.18
256 257 4.030134 AGCATACTAGCACGTACAGAAC 57.970 45.455 0.00 0.00 36.85 3.01
257 258 4.713824 AAGCATACTAGCACGTACAGAA 57.286 40.909 0.00 0.00 36.85 3.02
258 259 4.275196 CCTAAGCATACTAGCACGTACAGA 59.725 45.833 0.00 0.00 36.85 3.41
259 260 4.036498 ACCTAAGCATACTAGCACGTACAG 59.964 45.833 0.00 0.00 36.85 2.74
260 261 3.949754 ACCTAAGCATACTAGCACGTACA 59.050 43.478 0.00 0.00 36.85 2.90
261 262 4.564940 ACCTAAGCATACTAGCACGTAC 57.435 45.455 0.00 0.00 36.85 3.67
262 263 5.121298 CGATACCTAAGCATACTAGCACGTA 59.879 44.000 0.00 0.00 36.85 3.57
263 264 4.083431 CGATACCTAAGCATACTAGCACGT 60.083 45.833 0.00 0.00 36.85 4.49
264 265 4.404324 CGATACCTAAGCATACTAGCACG 58.596 47.826 0.00 0.00 36.85 5.34
265 266 4.082679 AGCGATACCTAAGCATACTAGCAC 60.083 45.833 0.00 0.00 36.85 4.40
266 267 4.079970 AGCGATACCTAAGCATACTAGCA 58.920 43.478 0.00 0.00 36.85 3.49
267 268 4.705337 AGCGATACCTAAGCATACTAGC 57.295 45.455 0.00 0.00 0.00 3.42
268 269 7.496263 TCTCATAGCGATACCTAAGCATACTAG 59.504 40.741 0.00 0.00 0.00 2.57
269 270 7.336396 TCTCATAGCGATACCTAAGCATACTA 58.664 38.462 0.00 0.00 0.00 1.82
270 271 6.181190 TCTCATAGCGATACCTAAGCATACT 58.819 40.000 0.00 0.00 0.00 2.12
271 272 6.438259 TCTCATAGCGATACCTAAGCATAC 57.562 41.667 0.00 0.00 0.00 2.39
272 273 6.460261 GCATCTCATAGCGATACCTAAGCATA 60.460 42.308 0.00 0.00 0.00 3.14
273 274 5.680922 GCATCTCATAGCGATACCTAAGCAT 60.681 44.000 0.00 0.00 0.00 3.79
274 275 4.380973 GCATCTCATAGCGATACCTAAGCA 60.381 45.833 0.00 0.00 0.00 3.91
275 276 4.109050 GCATCTCATAGCGATACCTAAGC 58.891 47.826 0.00 0.00 0.00 3.09
276 277 5.316327 TGCATCTCATAGCGATACCTAAG 57.684 43.478 0.00 0.00 0.00 2.18
277 278 5.921962 ATGCATCTCATAGCGATACCTAA 57.078 39.130 0.00 0.00 32.59 2.69
278 279 5.299531 GGTATGCATCTCATAGCGATACCTA 59.700 44.000 0.19 0.00 43.58 3.08
279 280 4.098654 GGTATGCATCTCATAGCGATACCT 59.901 45.833 0.19 0.00 43.58 3.08
280 281 4.363999 GGTATGCATCTCATAGCGATACC 58.636 47.826 0.19 0.00 43.58 2.73
286 287 5.446473 GCATAAACGGTATGCATCTCATAGC 60.446 44.000 21.74 0.00 46.89 2.97
287 288 6.099579 GCATAAACGGTATGCATCTCATAG 57.900 41.667 21.74 0.00 46.89 2.23
296 297 1.608590 AGCATGGCATAAACGGTATGC 59.391 47.619 19.63 19.63 46.94 3.14
297 298 3.988379 AAGCATGGCATAAACGGTATG 57.012 42.857 0.00 4.46 0.00 2.39
298 299 4.714632 AGTAAGCATGGCATAAACGGTAT 58.285 39.130 0.00 0.00 0.00 2.73
299 300 4.124238 GAGTAAGCATGGCATAAACGGTA 58.876 43.478 0.00 0.00 0.00 4.02
300 301 2.943033 GAGTAAGCATGGCATAAACGGT 59.057 45.455 0.00 0.00 0.00 4.83
301 302 3.206150 AGAGTAAGCATGGCATAAACGG 58.794 45.455 0.00 0.00 0.00 4.44
302 303 4.882671 AAGAGTAAGCATGGCATAAACG 57.117 40.909 0.00 0.00 0.00 3.60
303 304 7.321745 AGTAAAGAGTAAGCATGGCATAAAC 57.678 36.000 0.00 0.00 0.00 2.01
304 305 6.257849 CGAGTAAAGAGTAAGCATGGCATAAA 59.742 38.462 0.00 0.00 0.00 1.40
305 306 5.753438 CGAGTAAAGAGTAAGCATGGCATAA 59.247 40.000 0.00 0.00 0.00 1.90
306 307 5.163447 ACGAGTAAAGAGTAAGCATGGCATA 60.163 40.000 0.00 0.00 0.00 3.14
307 308 4.122776 CGAGTAAAGAGTAAGCATGGCAT 58.877 43.478 0.00 0.00 0.00 4.40
308 309 3.056107 ACGAGTAAAGAGTAAGCATGGCA 60.056 43.478 0.00 0.00 0.00 4.92
309 310 3.307242 CACGAGTAAAGAGTAAGCATGGC 59.693 47.826 0.00 0.00 0.00 4.40
310 311 3.865745 CCACGAGTAAAGAGTAAGCATGG 59.134 47.826 0.00 0.00 0.00 3.66
311 312 4.744570 TCCACGAGTAAAGAGTAAGCATG 58.255 43.478 0.00 0.00 0.00 4.06
312 313 5.599999 ATCCACGAGTAAAGAGTAAGCAT 57.400 39.130 0.00 0.00 0.00 3.79
313 314 5.401531 AATCCACGAGTAAAGAGTAAGCA 57.598 39.130 0.00 0.00 0.00 3.91
314 315 6.793349 TCTAATCCACGAGTAAAGAGTAAGC 58.207 40.000 0.00 0.00 0.00 3.09
318 319 9.968870 GATTAATCTAATCCACGAGTAAAGAGT 57.031 33.333 8.27 0.00 38.85 3.24
319 320 9.119329 CGATTAATCTAATCCACGAGTAAAGAG 57.881 37.037 13.45 0.00 41.10 2.85
320 321 8.080417 CCGATTAATCTAATCCACGAGTAAAGA 58.920 37.037 13.45 0.00 41.10 2.52
321 322 8.080417 TCCGATTAATCTAATCCACGAGTAAAG 58.920 37.037 13.45 0.00 41.10 1.85
322 323 7.944061 TCCGATTAATCTAATCCACGAGTAAA 58.056 34.615 13.45 0.00 41.10 2.01
323 324 7.514784 TCCGATTAATCTAATCCACGAGTAA 57.485 36.000 13.45 0.00 41.10 2.24
324 325 7.514784 TTCCGATTAATCTAATCCACGAGTA 57.485 36.000 13.45 0.00 41.10 2.59
325 326 6.401047 TTCCGATTAATCTAATCCACGAGT 57.599 37.500 13.45 0.00 41.10 4.18
326 327 7.709269 TTTTCCGATTAATCTAATCCACGAG 57.291 36.000 13.45 0.00 41.10 4.18
327 328 8.556194 CATTTTTCCGATTAATCTAATCCACGA 58.444 33.333 13.45 0.00 41.10 4.35
328 329 7.323656 GCATTTTTCCGATTAATCTAATCCACG 59.676 37.037 13.45 0.00 41.10 4.94
329 330 8.352942 AGCATTTTTCCGATTAATCTAATCCAC 58.647 33.333 13.45 0.00 41.10 4.02
330 331 8.463930 AGCATTTTTCCGATTAATCTAATCCA 57.536 30.769 13.45 0.00 41.10 3.41
341 342 9.313118 GTTGGAAATATTAGCATTTTTCCGATT 57.687 29.630 10.28 0.00 46.19 3.34
342 343 8.474025 TGTTGGAAATATTAGCATTTTTCCGAT 58.526 29.630 10.28 0.00 46.19 4.18
343 344 7.831753 TGTTGGAAATATTAGCATTTTTCCGA 58.168 30.769 11.67 8.65 46.19 4.55
344 345 8.647143 ATGTTGGAAATATTAGCATTTTTCCG 57.353 30.769 11.67 0.00 46.19 4.30
351 352 9.851686 TGTAGAGAATGTTGGAAATATTAGCAT 57.148 29.630 0.00 0.00 37.79 3.79
352 353 9.851686 ATGTAGAGAATGTTGGAAATATTAGCA 57.148 29.630 0.00 0.00 37.79 3.49
356 357 9.265901 CTCGATGTAGAGAATGTTGGAAATATT 57.734 33.333 0.00 0.00 40.52 1.28
357 358 8.424918 ACTCGATGTAGAGAATGTTGGAAATAT 58.575 33.333 0.62 0.00 40.57 1.28
358 359 7.706607 CACTCGATGTAGAGAATGTTGGAAATA 59.293 37.037 0.62 0.00 40.57 1.40
359 360 6.536582 CACTCGATGTAGAGAATGTTGGAAAT 59.463 38.462 0.62 0.00 40.57 2.17
360 361 5.869344 CACTCGATGTAGAGAATGTTGGAAA 59.131 40.000 0.62 0.00 40.57 3.13
361 362 5.185056 TCACTCGATGTAGAGAATGTTGGAA 59.815 40.000 0.62 0.00 40.57 3.53
362 363 4.705023 TCACTCGATGTAGAGAATGTTGGA 59.295 41.667 0.62 0.00 40.57 3.53
363 364 4.800993 GTCACTCGATGTAGAGAATGTTGG 59.199 45.833 0.62 0.00 40.57 3.77
364 365 5.645624 AGTCACTCGATGTAGAGAATGTTG 58.354 41.667 0.62 0.00 40.57 3.33
365 366 5.416013 TGAGTCACTCGATGTAGAGAATGTT 59.584 40.000 0.00 0.00 40.57 2.71
366 367 4.944317 TGAGTCACTCGATGTAGAGAATGT 59.056 41.667 0.00 0.00 40.57 2.71
367 368 5.491635 TGAGTCACTCGATGTAGAGAATG 57.508 43.478 0.00 0.00 40.57 2.67
368 369 4.036262 GCTGAGTCACTCGATGTAGAGAAT 59.964 45.833 0.00 0.00 40.57 2.40
369 370 3.375610 GCTGAGTCACTCGATGTAGAGAA 59.624 47.826 0.00 0.00 40.57 2.87
370 371 2.939756 GCTGAGTCACTCGATGTAGAGA 59.060 50.000 0.00 0.00 40.57 3.10
371 372 2.032799 GGCTGAGTCACTCGATGTAGAG 59.967 54.545 0.00 0.00 43.56 2.43
372 373 2.017782 GGCTGAGTCACTCGATGTAGA 58.982 52.381 0.00 0.00 32.35 2.59
373 374 1.066303 GGGCTGAGTCACTCGATGTAG 59.934 57.143 0.00 0.00 32.35 2.74
374 375 1.103803 GGGCTGAGTCACTCGATGTA 58.896 55.000 0.00 0.00 32.35 2.29
375 376 0.613292 AGGGCTGAGTCACTCGATGT 60.613 55.000 0.00 0.00 32.35 3.06
376 377 0.534412 AAGGGCTGAGTCACTCGATG 59.466 55.000 0.00 0.00 32.35 3.84
377 378 0.534412 CAAGGGCTGAGTCACTCGAT 59.466 55.000 0.00 0.00 32.35 3.59
378 379 1.536073 CCAAGGGCTGAGTCACTCGA 61.536 60.000 0.00 0.00 32.35 4.04
379 380 1.079543 CCAAGGGCTGAGTCACTCG 60.080 63.158 0.00 0.00 32.35 4.18
380 381 1.298014 CCCAAGGGCTGAGTCACTC 59.702 63.158 0.00 0.00 0.00 3.51
381 382 2.227036 CCCCAAGGGCTGAGTCACT 61.227 63.158 0.00 0.00 35.35 3.41
382 383 2.352805 CCCCAAGGGCTGAGTCAC 59.647 66.667 0.00 0.00 35.35 3.67
421 422 7.408756 TTGTTGTATACGGTTGTATAGGTCT 57.591 36.000 0.00 0.00 42.66 3.85
447 448 3.198872 GGGACTCTAATGTAACTGCAGC 58.801 50.000 15.27 0.00 0.00 5.25
515 533 1.677820 CCAAAGCGGAAAGGTACGGAT 60.678 52.381 0.00 0.00 36.56 4.18
516 534 0.320946 CCAAAGCGGAAAGGTACGGA 60.321 55.000 0.00 0.00 36.56 4.69
517 535 1.918868 GCCAAAGCGGAAAGGTACGG 61.919 60.000 0.00 0.00 36.56 4.02
723 789 1.890876 TTTGTCACTGCTTACGCCAT 58.109 45.000 0.00 0.00 34.43 4.40
904 973 6.806751 TGCGATAAACAGAAATAGCTAGACT 58.193 36.000 0.00 0.00 0.00 3.24
920 989 1.468520 GCTCCAAACTGCTGCGATAAA 59.531 47.619 0.00 0.00 0.00 1.40
966 1073 5.390461 CCTTCTTCTCGCTCGATATGTAGAG 60.390 48.000 0.00 0.00 37.54 2.43
967 1074 4.452795 CCTTCTTCTCGCTCGATATGTAGA 59.547 45.833 0.00 0.00 0.00 2.59
968 1075 4.452795 TCCTTCTTCTCGCTCGATATGTAG 59.547 45.833 0.00 0.00 0.00 2.74
969 1076 4.386711 TCCTTCTTCTCGCTCGATATGTA 58.613 43.478 0.00 0.00 0.00 2.29
970 1077 3.215151 TCCTTCTTCTCGCTCGATATGT 58.785 45.455 0.00 0.00 0.00 2.29
1298 1434 0.322277 ACTCCTTCTCGCCGTACAGA 60.322 55.000 0.00 0.00 0.00 3.41
1626 1763 5.738909 ACGGACTGATTGAAGATGATTCTT 58.261 37.500 0.00 0.00 44.99 2.52
1648 1785 4.134563 TGCCAAAGAGGACAAAGTTAGAC 58.865 43.478 0.00 0.00 41.22 2.59
1700 1838 3.701843 ACGATCGATACGTGACGATAG 57.298 47.619 24.34 24.17 46.71 2.08
1891 2186 8.564574 GGTGCTATTTGATTGGATATTTTCGTA 58.435 33.333 0.00 0.00 0.00 3.43
1892 2187 7.285401 AGGTGCTATTTGATTGGATATTTTCGT 59.715 33.333 0.00 0.00 0.00 3.85
1893 2188 7.651808 AGGTGCTATTTGATTGGATATTTTCG 58.348 34.615 0.00 0.00 0.00 3.46
1894 2189 9.468532 GAAGGTGCTATTTGATTGGATATTTTC 57.531 33.333 0.00 0.00 0.00 2.29
1935 2230 6.128902 ACACTGATAAGTCACGAACGAATTTC 60.129 38.462 0.14 0.00 0.00 2.17
1952 2247 8.599792 ACATGAATCCATCATCATACACTGATA 58.400 33.333 0.00 0.00 45.91 2.15
1959 2254 7.514784 TTCCAACATGAATCCATCATCATAC 57.485 36.000 0.00 0.00 45.91 2.39
2487 2995 2.989824 ACGTACAGCCACGGAGCT 60.990 61.111 7.84 0.00 46.12 4.09
2588 3111 5.233083 TCCTTGTGCCCTATTGATATCTG 57.767 43.478 3.98 0.00 0.00 2.90
2601 3124 1.448013 GTCCGTAGCTCCTTGTGCC 60.448 63.158 0.00 0.00 0.00 5.01
2680 3204 2.596904 ATCCGTATTCACCAAGACCG 57.403 50.000 0.00 0.00 0.00 4.79
2691 3215 5.938125 ACACAGCTTAGTTCAAATCCGTATT 59.062 36.000 0.00 0.00 0.00 1.89
2784 3308 2.413837 GTACCGATACCATGCACATCC 58.586 52.381 0.00 0.00 0.00 3.51
2833 3357 2.822764 AGATCGCACGGGAAGAATAAC 58.177 47.619 0.00 0.00 0.00 1.89
2858 3382 5.143660 CACAAATCTTTTGTGTATTCGCGA 58.856 37.500 19.85 3.71 43.40 5.87
2896 6052 1.493861 TCCTGCCTGATCTTCTCCTG 58.506 55.000 0.00 0.00 0.00 3.86
2918 6074 1.503542 GCAGCAACGTCCTGGATTG 59.496 57.895 15.37 2.38 0.00 2.67
2920 6076 2.434884 CGCAGCAACGTCCTGGAT 60.435 61.111 15.37 0.00 0.00 3.41
2950 6106 1.742761 ATCCGTGGCAAGACTGATTG 58.257 50.000 0.76 0.00 0.00 2.67
2953 6109 1.476891 GACTATCCGTGGCAAGACTGA 59.523 52.381 0.76 0.00 0.00 3.41
2967 6123 3.181471 CCCCTCATGTGACACAGACTATC 60.181 52.174 14.66 0.00 0.00 2.08
2976 6132 1.182667 CGTCTACCCCTCATGTGACA 58.817 55.000 0.00 0.00 0.00 3.58
2983 6139 1.202964 TGAGTTGTCGTCTACCCCTCA 60.203 52.381 0.00 0.00 33.70 3.86
3015 6182 1.908793 CCCAGGCTATCCGATCCGT 60.909 63.158 0.00 0.00 37.47 4.69
3047 6214 5.059833 GTCTTCACCTTTGAGTCATTGTCT 58.940 41.667 0.00 0.00 31.71 3.41
3051 6218 4.780815 TGTGTCTTCACCTTTGAGTCATT 58.219 39.130 0.00 0.00 43.26 2.57
3054 6277 3.058639 GCATGTGTCTTCACCTTTGAGTC 60.059 47.826 0.00 0.00 43.26 3.36
3077 6300 0.873312 TGAATCTCGATGCTCGCAGC 60.873 55.000 0.00 0.00 40.21 5.25
3078 6301 0.851495 GTGAATCTCGATGCTCGCAG 59.149 55.000 0.00 1.49 40.21 5.18
3270 6493 3.535561 CTGTGATGATGAACCACCTACC 58.464 50.000 0.00 0.00 0.00 3.18
3285 6508 2.371841 TGTGCAACTAGAACCCTGTGAT 59.628 45.455 0.00 0.00 38.04 3.06
3327 6551 0.759959 TTACTTTGTCGTGGCCTCCA 59.240 50.000 3.32 0.00 0.00 3.86
3367 6591 3.788227 TCTGGTTGGCACTACAAGATT 57.212 42.857 0.00 0.00 0.00 2.40
3402 6626 0.396435 TTGTCGCACTTGGGATGTCT 59.604 50.000 0.00 0.00 39.23 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.